Psyllid ID: psy6284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYHLTRDQR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccEEEEccccccccccHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccHHHHEEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccEEEEEEccEEEEccccccccEEEEccccccccccccHHHHccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
MSAYERVKQWNTFARIWHIYdakwqnpiESAKVISKHlqgqhkpiyhplndcgdhvivmnsrhialpgyewkkrayfhhtgypggvsWTLAWqlheidptLDKACEEldkqdsdedeesdveeEDLDRIASAVYSKEqgnklvkegkwGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNrklniplspikvdflhnpyhltrdqr
Flexible Loop (DISEMBL)
MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDkqdsdedeesdveeedldriasavyskeqgnklvkegkwGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIplspikvdflhnpyhltrdqr
Low Complexity Region (SEG)
MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACeeldkqdsdedeesdveeedldRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYHLTRDQR
Disordered region (IsUnstruct)
*****RVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLD**************************************KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYH******
Disordered Region (DISOPRED)
****E***QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIAL***************************************************************************LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE*************************L*****
Disordered Region (DISEMBL)
MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEE******************LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYHLTRDQR
Disordered Region (DISPRO)
*SAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEE*****************DLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYHLTRDQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9VJ38	178	39S ribosomal protein L13	yes	N/A	0.374	0.567	0.722	1e-42
Q9BYD1	178	39S ribosomal protein L13	yes	N/A	0.370	0.561	0.534	1e-26
Q9D706	660	RNA polymerase II-associa	yes	N/A	0.570	0.233	0.438	1e-26
Q68FQ7	659	RNA polymerase II-associa	yes	N/A	0.570	0.233	0.432	2e-26
Q3SYS1	178	39S ribosomal protein L13	yes	N/A	0.370	0.561	0.514	4e-26
Q9D1P0	178	39S ribosomal protein L13	no	N/A	0.370	0.561	0.504	1e-25
Q5ZKQ3	665	RNA polymerase II-associa	no	N/A	0.544	0.221	0.431	3e-23
Q28IV3	657	RNA polymerase II-associa	no	N/A	0.574	0.235	0.375	7e-23
Q6NU95	660	RNA polymerase II-associa	N/A	N/A	0.540	0.221	0.410	9e-23
Q9H6T3	665	RNA polymerase II-associa	no	N/A	0.566	0.230	0.397	4e-22

>sp|Q9VJ38|RM13_DROME 39S ribosomal protein L13, mitochondrial OS=Drosophila melanogaster GN=mRpL13 PE=2 SV=2

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G  KPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Drosophila melanogaster (taxid: 7227)

>sp|Q9BYD1|RM13_HUMAN 39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
           MS++ R  +QW TFARIW++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct: 1   MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60

Query: 60  NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP 
Sbjct: 61  NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPV 101

Homo sapiens (taxid: 9606)

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 8/162 (4%)

Query: 91  AWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRI----ASAVYSKEQGNKLVKEG 146
           AW   ++D  LD    ELDK+DS  D  S   E D D I      A+  KE+GNK  K+G
Sbjct: 93  AWAKLDVDRILD----ELDKEDSTHDSLSQESESDEDGIRVDSQKALVLKEKGNKYFKQG 148

Query: 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206
           K+ EAIE Y   +   P++ V   NRA  + ++K +  AE+DC  ++ L  TY KAY RR
Sbjct: 149 KYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARR 208

Query: 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            AAR +L   EDARKD  KVL LEP+N +A  EL ++N+ L 
Sbjct: 209 GAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALT 250

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Mus musculus (taxid: 10090)

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 97/162 (59%), Gaps = 8/162 (4%)

Query: 91  AWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLD--RIAS--AVYSKEQGNKLVKEG 146
           AW   ++D  LD    ELDK+DS  D  S   E D D  R+ S  A+  KE+GNK  K+G
Sbjct: 92  AWAKLDVDSILD----ELDKEDSTHDSVSQESESDEDGVRVDSQKALVLKEKGNKYFKQG 147

Query: 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206
           K+ EAIE Y   +   P++ V   NRA  + ++K +  AE+DC  ++ L  +Y KAY RR
Sbjct: 148 KYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARR 207

Query: 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            AAR +L   EDARKD +KVL LEP+N +A  EL ++++ L 
Sbjct: 208 GAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALT 249

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q3SYS1|RM13_BOVIN 39S ribosomal protein L13, mitochondrial OS=Bos taurus GN=MRPL13 PE=1 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 1   MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
           M++  R  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct: 1   MASLSRAPQQWATFARVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIM 60

Query: 60  NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP 
Sbjct: 61  NTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPV 101

Bos taurus (taxid: 9913)

>sp|Q9D1P0|RM13_MOUSE 39S ribosomal protein L13, mitochondrial OS=Mus musculus GN=Mrpl13 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
           MS++ R  +QW TFAR+W++ D K Q P + A + S  LQG +KP+YH L+DCGDHV+++
Sbjct: 1   MSSFSRAPQQWATFARMWYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVII 60

Query: 60  NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP 
Sbjct: 61  NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHRKDPV 101

Mus musculus (taxid: 10090)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 6/153 (3%)

Query: 101 LDKACEELDKQDSDEDE---ESDVEEEDL--DRIASAVYSKEQGNKLVKEGKWGEAIEKY 155
           +DK  EELDK DS  D    ESD EE+ +  D+   A+  KE+GNK  K+G + EAI+ Y
Sbjct: 98  VDKILEELDKDDSTHDSVSPESDSEEDGIHIDK-EKALAEKEKGNKYFKQGNFDEAIKCY 156

Query: 156 NVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
              + + P + V   NRA  F +MK +  AE+DC  +L LD  Y KAY RR AAR +L +
Sbjct: 157 TRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDKNYTKAYARRGAARFALKN 216

Query: 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           F+ A++D  KVL L+ NN +A+ EL ++ + L+
Sbjct: 217 FQGAKEDYEKVLELDANNYEAKNELKKIEQALS 249

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%)

Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIAS--AVYSKEQGNKLVKEGKWGEAIEKYNVA 158
           +D+A E++DK +++   ES+  +ED   + +  A+  KE+GN   K G++ EAIE Y   
Sbjct: 99  VDRALEDIDKDNNESSSESECGDEDGITVDTEKALLEKEKGNNYFKSGQYDEAIECYTRG 158

Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
           +   P++AV   NRA  F ++K Y  AE+DC  ++ L++ Y KAY RR AAR +L   + 
Sbjct: 159 MDADPYNAVLPTNRASAFFRLKKYAVAESDCNLAIALNHNYAKAYARRGAARLALKDLQG 218

Query: 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255
           A++D  KVL L+ NN +A+ EL ++N++L    S ++
Sbjct: 219 AKEDYEKVLELDVNNFEAKNELRKINKELQSSTSDVQ 255

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score =  107 bits (267), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 93/151 (61%), Gaps = 5/151 (3%)

Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIA----SAVYSKEQGNKLVKEGKWGEAIEKYN 156
           +DKA E++DK +S+E   SD E  D D I      A+  KE+GN   K GK+ EAIE Y 
Sbjct: 98  VDKALEDIDKDNSNE-TSSDSECGDEDAITVDTEKALSEKEKGNNYFKSGKYDEAIECYT 156

Query: 157 VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216
             +   P++A+   NRA  F ++K +  AE+DC  ++ L+  Y KAY RR AAR +L + 
Sbjct: 157 RGMDADPYNAILPTNRASAFFRLKKFAVAESDCNLAIALNRDYAKAYARRGAARLALKNL 216

Query: 217 EDARKDILKVLALEPNNKQAEIELAELNRKL 247
           + A++D  KVL L+ NN +A+ EL ++N++L
Sbjct: 217 QGAKEDYEKVLELDANNFEAKNELRKINQEL 247

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 91  AWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRI----ASAVYSKEQGNKLVKEG 146
           AW   ++D  LD    ELDK DS  +  S   E + D I      A+  KE+GNK  K+G
Sbjct: 92  AWAKLDVDRILD----ELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQG 147

Query: 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206
           K+ EAI+ Y   +   P++ V   NRA  + ++K +  AE+DC  ++ L+ +Y KAY RR
Sbjct: 148 KYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRR 207

Query: 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
            AAR +L   E+A+KD  +VL LEPNN +A  EL ++++ L
Sbjct: 208 GAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQAL 248

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
194766467	178	GF20676 [Drosophila ananassae] gi|190617	0.374	0.567	0.732	1e-41
195433048	178	GK23896 [Drosophila willistoni] gi|19416	0.374	0.567	0.722	2e-41
170050843	178	39S ribosomal protein L13 [Culex quinque	0.374	0.567	0.742	3e-41
195386468	178	GJ24452 [Drosophila virilis] gi|19414838	0.374	0.567	0.722	4e-41
356577831	178	PREDICTED: 39S ribosomal protein L13, mi	0.374	0.567	0.732	4e-41
195344934	178	GM17054 [Drosophila sechellia] gi|195579	0.374	0.567	0.722	5e-41
194879946	178	GG21677 [Drosophila erecta] gi|195484273	0.374	0.567	0.722	5e-41
289743369	178	mitochondrial ribosomal protein L13 [Glo	0.374	0.567	0.722	5e-41
195114384	178	GI17018 [Drosophila mojavensis] gi|19391	0.374	0.567	0.712	6e-41
24585068	178	mitochondrial ribosomal protein L13 [Dro	0.374	0.567	0.722	9e-41

>gi|194766467|ref|XP_001965346.1| GF20676 [Drosophila ananassae] gi|190617956|gb|EDV33480.1| GF20676 [Drosophila ananassae]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 84/101 (83%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G HKPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLMGLHKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433048|ref|XP_002064527.1| GK23896 [Drosophila willistoni] gi|194160612|gb|EDW75513.1| GK23896 [Drosophila willistoni]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 84/101 (83%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESA+++  HL G HKPIYHP+NDCGDHV+++N
Sbjct: 1   MSVAKRVQQWATFARTWHIYDCTWQNPFESARLVKTHLMGLHKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           ++ IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPTL
Sbjct: 61  TKEIALPGDEWIKRVYFHHTGYPGGASWTLAWQLHEKDPTL 101

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050843|ref|XP_001861494.1| 39S ribosomal protein L13 [Culex quinquefasciatus] gi|167872296|gb|EDS35679.1| 39S ribosomal protein L13 [Culex quinquefasciatus]

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESA +I KHL G HKPIYHP+NDCGDHV+V+N
Sbjct: 1   MSVTKRVQQWATFARAWHIYDCAWQNPFESASLIRKHLMGLHKPIYHPMNDCGDHVVVIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +  IALPG EWKKRAYFHHTGY GG SWTLAW+LHE DPT+
Sbjct: 61  TAEIALPGDEWKKRAYFHHTGYAGGASWTLAWELHEKDPTM 101

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386468|ref|XP_002051926.1| GJ24452 [Drosophila virilis] gi|194148383|gb|EDW64081.1| GJ24452 [Drosophila virilis]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 84/101 (83%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESA++I  HL G HKPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAQLIKTHLMGLHKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           ++ IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TKEIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|356577831|ref|XP_003557025.1| PREDICTED: 39S ribosomal protein L13, mitochondrial-like [Glycine max]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 83/101 (82%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK+I  HL G HKPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLIKTHLMGLHKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAW+LH  DPTL
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWELHSKDPTL 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195344934|ref|XP_002039031.1| GM17054 [Drosophila sechellia] gi|195579998|ref|XP_002079843.1| GD21802 [Drosophila simulans] gi|194134161|gb|EDW55677.1| GM17054 [Drosophila sechellia] gi|194191852|gb|EDX05428.1| GD21802 [Drosophila simulans]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G  KPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKSHLMGLQKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194879946|ref|XP_001974334.1| GG21677 [Drosophila erecta] gi|195484273|ref|XP_002090624.1| GE12697 [Drosophila yakuba] gi|190657521|gb|EDV54734.1| GG21677 [Drosophila erecta] gi|194176725|gb|EDW90336.1| GE12697 [Drosophila yakuba]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G  KPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLMGLQKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743369|gb|ADD20432.1| mitochondrial ribosomal protein L13 [Glossina morsitans morsitans]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP +SAK+ISKHL G +KPIYHP+NDCGDHV+ +N
Sbjct: 1   MSICKRVQQWATFARTWHIYDCTWQNPFDSAKIISKHLMGMNKPIYHPMNDCGDHVVAIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           ++ IALPG EW KR YFHHTGYPGG SWTLAW+LHE DPT+
Sbjct: 61  TKEIALPGDEWIKRVYFHHTGYPGGASWTLAWELHEKDPTM 101

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114384|ref|XP_002001747.1| GI17018 [Drosophila mojavensis] gi|193912322|gb|EDW11189.1| GI17018 [Drosophila mojavensis]

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 84/101 (83%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESA+++  HL G HKPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAQLVKTHLMGLHKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           ++ IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TKEIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585068|ref|NP_523598.2| mitochondrial ribosomal protein L13 [Drosophila melanogaster] gi|31340372|sp|Q9VJ38.2|RM13_DROME RecName: Full=39S ribosomal protein L13, mitochondrial; Short=L13mt; Short=MRP-L13 gi|22946784|gb|AAF53719.2| mitochondrial ribosomal protein L13 [Drosophila melanogaster] gi|218505925|gb|ACK77619.1| GM19213p [Drosophila melanogaster]

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query: 1   MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
           MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G  KPIYHP+NDCGDHV+++N
Sbjct: 1   MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLIN 60

Query: 61  SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
           +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct: 61  TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
FB|FBgn0032720	178	mRpL13 "mitochondrial ribosoma	0.374	0.567	0.722	1.4e-41
UNIPROTKB|F1S286	178	MRPL13 "Uncharacterized protei	0.366	0.556	0.52	2.3e-29
UNIPROTKB|Q3SYS1	178	MRPL13 "39S ribosomal protein	0.366	0.556	0.52	5.9e-29
RGD|1359587	178	Mrpl13 "mitochondrial ribosoma	0.366	0.556	0.51	9.6e-29
MGI|MGI:2137218	178	Mrpl13 "mitochondrial ribosoma	0.366	0.556	0.51	2e-28
UNIPROTKB|E2RT81	179	MRPL13 "Uncharacterized protei	0.366	0.553	0.53	2.8e-27
UNIPROTKB|J9P023	178	MRPL13 "Uncharacterized protei	0.366	0.556	0.53	2.8e-27
UNIPROTKB|Q9BYD1	178	MRPL13 "39S ribosomal protein	0.366	0.556	0.54	7.3e-27
ZFIN|ZDB-GENE-050522-167	179	mrpl13 "mitochondrial ribosoma	0.370	0.558	0.504	7.6e-25
UNIPROTKB|K7GP19	154	MRPL13 "Uncharacterized protei	0.277	0.487	0.546	2.9e-22

FB|FBgn0032720 mRpL13 "mitochondrial ribosomal protein L13" [Drosophila melanogaster (taxid:7227)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query:     1 MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
             MS  +RV+QW TFAR WHIYD  WQNP ESAK++  HL G  KPIYHP+NDCGDHV+++N
Sbjct:     1 MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLIN 60

Query:    61 SRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
             +R IALPG EW KR YFHHTGYPGG SWTLAWQLHE DPT+
Sbjct:    61 TREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPTM 101

GO:0006412 "translation" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS

UNIPROTKB|F1S286 MRPL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 303 (111.7 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 52/100 (52%), Positives = 71/100 (71%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ +  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct:     1 MSSFSKAPQQWATFARVWYLLDGKMQPPGKLAAMASVKLQGLHKPVYHQLSDCGDHVVIM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH+ DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHQKDP 100

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q3SYS1 MRPL13 "39S ribosomal protein L13, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 52/100 (52%), Positives = 69/100 (69%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             M++  R  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct:     1 MASLSRAPQQWATFARVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDP 100

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1359587 Mrpl13 "mitochondrial ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 51/100 (51%), Positives = 70/100 (70%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ +  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV+++
Sbjct:     1 MSSFSKAPQQWATFARMWYLLDGKMQPPGKLAAIASNKLQGLHKPVYHQLSDCGDHVVII 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLKDP 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IEA;ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0006412 "translation" evidence=IEA

MGI|MGI:2137218 Mrpl13 "mitochondrial ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 51/100 (51%), Positives = 70/100 (70%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ R  +QW TFAR+W++ D K Q P + A + S  LQG +KP+YH L+DCGDHV+++
Sbjct:     1 MSSFSRAPQQWATFARMWYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVII 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHRKDP 100

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2RT81 MRPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 53/100 (53%), Positives = 71/100 (71%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ R  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct:     1 MSSFSRAPQQWATFARVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH+ DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHQKDP 100

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P023 MRPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 53/100 (53%), Positives = 71/100 (71%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ R  +QW TFAR+W++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct:     1 MSSFSRAPQQWATFARVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH+ DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHQKDP 100

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9BYD1 MRPL13 "39S ribosomal protein L13, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 54/100 (54%), Positives = 70/100 (70%)

Query:     1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ R  +QW TFARIW++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct:     1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDP 99
             N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP
Sbjct:    61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDP 100

GO:0006412 "translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

ZFIN|ZDB-GENE-050522-167 mrpl13 "mitochondrial ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 51/101 (50%), Positives = 69/101 (68%)

Query:     1 MSAYER-VKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
             MS++ R  +QW TFAR W + DA+ Q P + A + +  LQG+HKPIYHPL+D GDHV+VM
Sbjct:     1 MSSFSRSAQQWATFARSWFLIDARMQPPGKIASMCAVRLQGKHKPIYHPLSDIGDHVVVM 60

Query:    60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
             N++HIA  G +W+++ Y  HTG+PG      A QLH  D T
Sbjct:    61 NTKHIAFSGNKWEQKVYSSHTGHPGSFKQVTAAQLHRKDST 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|K7GP19 MRPL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query:    25 QNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPG 84
             Q P + A + S  LQG HKP+YH L+DCGDHV++MN+RHIA  G +W+++ Y  HTGYPG
Sbjct:     2 QPPGKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPG 61

Query:    85 GVSWTLAWQLHEIDP 99
             G     A QLH+ DP
Sbjct:    62 GFRQVTAAQLHQKDP 76

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VJ38	RM13_DROME	No assigned EC number	0.7227	0.3740	0.5674	yes	N/A
Q3SYS1	RM13_BOVIN	No assigned EC number	0.5148	0.3703	0.5617	yes	N/A
Q9BYD1	RM13_HUMAN	No assigned EC number	0.5346	0.3703	0.5617	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	270
cd00392	114	cd00392, Ribosomal_L13, Ribosomal protein L13	6e-31
pfam00572	128	pfam00572, Ribosomal_L13, Ribosomal protein L13	1e-29
TIGR01066	140	TIGR01066, rplM_bact, ribosomal protein L13, bacte	2e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-17
CHL00159	143	CHL00159, rpl13, ribosomal protein L13; Validated	2e-16
PRK09216	144	PRK09216, rplM, 50S ribosomal protein L13; Reviewe	4e-16
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-14
COG0102	148	COG0102, RplM, Ribosomal protein L13 [Translation,	5e-14
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-11
PLN00205	191	PLN00205, PLN00205, ribisomal protein L13 family p	2e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	5e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.001
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.002
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.003

>gnl|CDD|238230 cd00392, Ribosomal_L13, Ribosomal protein L13

 Score =  111 bits (279), Expect = 6e-31
 Identities = 37/84 (44%), Positives = 52/84 (61%)

Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
           WH+ DAK Q     A  ++K L G+HKP Y P  DCGD+V+V+N+  I + G +W+++ Y
Sbjct: 1   WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVY 60

Query: 77  FHHTGYPGGVSWTLAWQLHEIDPT 100
           + HTGYPGG+    A  LH   P 
Sbjct: 61  YRHTGYPGGLKNPTAGPLHPRAPE 84

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies. Length = 114

>gnl|CDD|201314 pfam00572, Ribosomal_L13, Ribosomal protein L13

 Score =  107 bits (271), Expect = 1e-29
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
           WH+ DAK Q     A  ++K L+G+HKP Y P  DCGD+V+V+N+  I L G +  ++ Y
Sbjct: 1   WHVIDAKGQILGRLASKVAKLLRGKHKPTYTPHVDCGDYVVVINAEKIVLTGKKRDQKKY 60

Query: 77  FHHTGYPGGVSWTLAWQLHEIDPT 100
           + HTGYPGG+    A    E  P 
Sbjct: 61  YRHTGYPGGLKNPTAKGPLERKPE 84

Length = 128

>gnl|CDD|162186 TIGR01066, rplM_bact, ribosomal protein L13, bacterial type

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query: 7  VKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIAL 66
           K  +   R W++ DA  +     A  +++ L+G+HKP Y P  DCGD+VIV+N+  + L
Sbjct: 3  AKASDDKKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRL 62

Query: 67 PGYEWKKRAYFHHTGYPGG 85
           G + +++ Y+ H+GYPGG
Sbjct: 63 TGKKLEQKVYYRHSGYPGG 81

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 140

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 32/97 (32%), Positives = 46/97 (47%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
              GN   K G + EA+E Y  A++  P +A  + N A  + K+  Y  A  D   +L+L
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
           D    KAY     A   L  +E+A +   K L L+PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|177072 CHL00159, rpl13, ribosomal protein L13; Validated

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 15  RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
           R W+I DAK Q     A  I+  L+G++KP YHP  D GD+VIV+N+  I + G +  ++
Sbjct: 14  RKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQK 73

Query: 75  AYFHHTGYPGGVSWTLAWQLHEIDP--TLDKA 104
            Y  H+G PGG+      +L    P   ++KA
Sbjct: 74  FYVRHSGRPGGLKIETFEELQNRLPNRIIEKA 105

Length = 143

>gnl|CDD|181703 PRK09216, rplM, 50S ribosomal protein L13; Reviewed

 Score = 72.8 bits (180), Expect = 4e-16
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query: 15 RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
          R W++ DA+ +     A  ++  L+G+HKP + P  D GD VIV+N+  + L G +   +
Sbjct: 13 RKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDK 72

Query: 75 AYFHHTGYPGGV 86
           Y+ H+GYPGG+
Sbjct: 73 IYYRHSGYPGGL 84

Length = 144

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 116 DEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC 175
           DE S     + +R   A   KE+GNK  +   + +AI+ Y+ AI+  P D V+++NRA C
Sbjct: 111 DESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAAC 169

Query: 176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235
              + ++     D TA+L+LD  Y KA  RRA A   L  + DA  D L    +    + 
Sbjct: 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD-LTASCIIDGFRN 228

Query: 236 AEIELAELNRKLN 248
            +   A + R L 
Sbjct: 229 EQSAQA-VERLLK 240

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
          +   R W++ DA+ +     A  ++K L+G+HKP Y P  D GD+VIV+N+  + + G  
Sbjct: 9  SEVERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITG-- 66

Query: 71 WKKRA---YFHHTGYPGGVS 87
           KK     Y+ H+GYPGG+ 
Sbjct: 67 -KKLTDKKYYRHSGYPGGLK 85

Length = 148

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-KNYVSAEADC 189
           +A   K  GN L K G + EAIE Y  A++  P +A  + N AL +LK+ K+Y  A  D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 190 TASLKLD 196
             +L+LD
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|177795 PLN00205, PLN00205, ribisomal protein L13 family protein; Provisional

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 33/95 (34%), Positives = 47/95 (49%)

Query: 7   VKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIAL 66
           +++ N     W ++DAK Q     A  IS  LQG+ KP Y P  D GD  IV+N++ I++
Sbjct: 7   LRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISV 66

Query: 67  PGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTL 101
            G +   + Y  HTGY G +           DPT 
Sbjct: 67  TGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTE 101

Length = 191

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-HFEDARKD 222
            +A    N      K+ +Y  A      +L+LD    +AY   A A   L   +E+A +D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 223 ILKVLALEP 231
           + K L L+P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210
           A++ Y  AI   P++A  +A+RA   +K+ N+  A AD   +++LD +  KAY R+  A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 211 RSLNHFEDARKDILKVLALEPN 232
             L  ++ A+  + K  +L P 
Sbjct: 81  MKLEEYQTAKAALEKGASLAPG 102

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
           N    + K+ +Y  A      +L+LD     AY   AAA   L  +E+A +D  K L L+
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 231 PNNKQAEIELAELNRKLN 248
           P+N +A   L     KL 
Sbjct: 65  PDNAKAYYNLGLAYYKLG 82

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 28/103 (27%), Positives = 44/103 (42%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
           GK  EA+   + +I+  P     +  RA   L++ +   AE D   +LKL++     Y  
Sbjct: 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           RA        F  A KD  K + L+P+   + I+L     K  
Sbjct: 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAY 203
            ++ EAI+ Y +A    P D   + + A C L +    SA      ++++  +N      
Sbjct: 65  KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124

Query: 204 QRRAAA 209
           + RA A
Sbjct: 125 KERAEA 130

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 26/106 (24%), Positives = 42/106 (39%)

Query: 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
           E +W +A+E Y   +Q  P++       AL          A       +    T    Y+
Sbjct: 99  EKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYE 158

Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250
             A   R+     DA +   + L LEP+N +A +EL  +  +L  P
Sbjct: 159 ALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAP 204

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 142 LVKEGKWGEAIEKYNVAI--QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199
           L ++GK+ +A++++  AI    YP  A    N  LC LK  ++  AE   T +L++D   
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168

Query: 200 VKAYQRRAAARRSLN--HFEDARKDILKVLALEPNNKQA 236
            ++      A        ++DAR  + +         ++
Sbjct: 169 PES--LLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG3203|consensus	165		99.98
CHL00159	143	rpl13 ribosomal protein L13; Validated	99.96
PRK09216	144	rplM 50S ribosomal protein L13; Reviewed	99.96
TIGR01066	140	rplM_bact ribosomal protein L13, bacterial type. T	99.96
COG0102	148	RplM Ribosomal protein L13 [Translation, ribosomal	99.95
PLN00205	191	ribisomal protein L13 family protein; Provisional	99.95
cd00392	114	Ribosomal_L13 Ribosomal protein L13. Protein L13,	99.95
PF00572	128	Ribosomal_L13: Ribosomal protein L13; InterPro: IP	99.93
KOG0543|consensus	397		99.92
KOG0553|consensus	304		99.91
PRK15359	144	type III secretion system chaperone protein SscB;	99.78
KOG0548|consensus	539		99.78
KOG4234|consensus	271		99.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.75
KOG4648|consensus	536		99.72
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.69
KOG4626|consensus	966		99.69
KOG0547|consensus	606		99.68
KOG0548|consensus	539		99.68
KOG4626|consensus	966		99.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.65
PRK11189	296	lipoprotein NlpI; Provisional	99.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.63
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.62
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.6
KOG0545|consensus	329		99.6
KOG0550|consensus	486		99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
KOG1126|consensus	638		99.58
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.56
KOG1155|consensus	559		99.55
TIGR01077	142	L13_A_E ribosomal protein L13, archaeal/eukaryotic	99.54
PRK12370	553	invasion protein regulator; Provisional	99.53
PTZ00068	202	60S ribosomal protein L13a; Provisional	99.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.5
PRK12370	553	invasion protein regulator; Provisional	99.5
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.5
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.48
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
KOG1126|consensus	638		99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.46
PRK11189	296	lipoprotein NlpI; Provisional	99.45
KOG0551|consensus	390		99.45
KOG0547|consensus	606		99.44
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.44
KOG4642|consensus	284		99.44
PRK15331	165	chaperone protein SicA; Provisional	99.44
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.43
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.43
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.43
KOG0624|consensus	504		99.43
KOG1155|consensus	559		99.42
PRK06394	146	rpl13p 50S ribosomal protein L13P; Reviewed	99.41
KOG0376|consensus	476		99.41
KOG1125|consensus	579		99.41
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.4
PLN02789	320	farnesyltranstransferase	99.4
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
PLN02789	320	farnesyltranstransferase	99.36
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.35
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.35
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.33
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.32
KOG2076|consensus	895		99.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.3
PRK10803	263	tol-pal system protein YbgF; Provisional	99.3
KOG4555|consensus	175		99.3
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.29
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.29
KOG1125|consensus	579		99.26
KOG0553|consensus	304		99.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.24
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.21
KOG1173|consensus	611		99.18
KOG1173|consensus	611		99.18
KOG0624|consensus	504		99.17
KOG2003|consensus	840		99.17
PF13512	142	TPR_18: Tetratricopeptide repeat	99.16
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.16
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.14
PF13371	73	TPR_9: Tetratricopeptide repeat	99.13
PRK14574	822	hmsH outer membrane protein; Provisional	99.13
KOG4162|consensus	799		99.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.11
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.11
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.11
KOG0550|consensus	486		99.11
KOG1128|consensus	777		99.1
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.07
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.06
PRK11906	458	transcriptional regulator; Provisional	99.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.05
PF13371	73	TPR_9: Tetratricopeptide repeat	99.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.04
KOG2002|consensus	1018		99.02
KOG1129|consensus	478		99.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
KOG1308|consensus	377		99.0
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.0
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.99
KOG4162|consensus	799		98.99
PRK14574	822	hmsH outer membrane protein; Provisional	98.97
KOG1156|consensus	700		98.97
KOG3060|consensus	289		98.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.96
KOG3060|consensus	289		98.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
PF12688	120	TPR_5: Tetratrico peptide repeat	98.93
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.92
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.86
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.79
KOG0543|consensus	397		98.78
KOG1128|consensus	777		98.77
KOG1840|consensus	508		98.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
PF12688	120	TPR_5: Tetratrico peptide repeat	98.74
PRK15331	165	chaperone protein SicA; Provisional	98.73
KOG2002|consensus	1018		98.73
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.71
PRK11906	458	transcriptional regulator; Provisional	98.7
PRK10803	263	tol-pal system protein YbgF; Provisional	98.69
KOG1174|consensus	564		98.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.64
KOG4648|consensus	536		98.64
KOG2003|consensus	840		98.64
KOG2076|consensus	895		98.64
KOG0495|consensus	913		98.61
KOG1127|consensus	1238		98.61
KOG1840|consensus	508		98.6
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.59
KOG1156|consensus	700		98.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.58
KOG1129|consensus	478		98.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.51
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.51
PF13428	44	TPR_14: Tetratricopeptide repeat	98.51
KOG1174|consensus	564		98.5
KOG1310|consensus	758		98.5
KOG0495|consensus	913		98.45
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.43
PF13431	34	TPR_17: Tetratricopeptide repeat	98.42
KOG1127|consensus	1238		98.42
KOG4555|consensus	175		98.39
PF13431	34	TPR_17: Tetratricopeptide repeat	98.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.35
PF13428	44	TPR_14: Tetratricopeptide repeat	98.33
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.29
KOG4642|consensus	284		98.29
KOG4234|consensus	271		98.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.27
KOG0546|consensus	372		98.24
KOG2376|consensus	652		98.24
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.23
KOG1130|consensus	639		98.21
KOG3785|consensus	557		98.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.2
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.19
KOG2376|consensus	652		98.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.12
PF13512	142	TPR_18: Tetratricopeptide repeat	98.1
KOG4340|consensus	459		98.1
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.06
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.03
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.0
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.95
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.88
KOG1130|consensus	639		97.87
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.83
KOG2796|consensus	366		97.81
KOG0551|consensus	390		97.8
PRK10941	269	hypothetical protein; Provisional	97.8
KOG4507|consensus	886		97.79
PLN03218	1060	maturation of RBCL 1; Provisional	97.75
KOG3824|consensus	472		97.74
KOG2053|consensus	932		97.7
KOG4340|consensus	459		97.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.69
KOG3785|consensus	557		97.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.68
PLN03218	1060	maturation of RBCL 1; Provisional	97.65
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.63
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.61
KOG3364|consensus	149		97.6
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.59
KOG2471|consensus	696		97.56
KOG2796|consensus	366		97.56
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.55
KOG0376|consensus	476		97.54
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.54
KOG3081|consensus	299		97.53
PLN03077	857	Protein ECB2; Provisional	97.52
KOG0545|consensus	329		97.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.47
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.46
KOG4151|consensus	748		97.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.45
KOG3204|consensus	197		97.41
PRK04841	903	transcriptional regulator MalT; Provisional	97.37
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.33
KOG2610|consensus	491		97.32
KOG3824|consensus	472		97.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.32
PRK04841	903	transcriptional regulator MalT; Provisional	97.31
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.29
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.28
KOG4814|consensus	872		97.26
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.23
PLN03077	857	Protein ECB2; Provisional	97.22
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.22
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.22
KOG1308|consensus	377		97.22
KOG3081|consensus	299		97.21
PRK10941	269	hypothetical protein; Provisional	97.21
KOG2396|consensus	568		97.19
KOG1915|consensus	677		97.13
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.09
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.08
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.06
KOG1941|consensus	518		97.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.98
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.91
KOG1915|consensus	677		96.89
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.87
KOG1941|consensus	518		96.85
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.81
KOG1586|consensus	288		96.8
KOG1585|consensus	308		96.79
KOG2471|consensus	696		96.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.67
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.52
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.49
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.48
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.4
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.3
KOG1070|consensus	1710		96.26
KOG2053|consensus	932		96.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.15
COG2912	269	Uncharacterized conserved protein [Function unknow	96.14
KOG1586|consensus	288		96.09
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.07
KOG0530|consensus	318		96.06
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.05
KOG2610|consensus	491		95.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.89
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.88
KOG1310|consensus	758		95.86
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.63
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.6
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.6
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.52
KOG4507|consensus	886		95.49
KOG0529|consensus	421		95.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.35
COG2912	269	Uncharacterized conserved protein [Function unknow	95.32
KOG0529|consensus	421		95.29
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.26
KOG3364|consensus	149		95.17
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.11
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.03
KOG1070|consensus	1710		95.01
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.95
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.81
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.8
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.63
KOG1550|consensus	552		94.55
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.47
KOG1585|consensus	308		94.44
KOG0530|consensus	318		94.33
KOG4814|consensus	872		94.33
KOG1550|consensus	552		94.18
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.14
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.83
KOG2047|consensus	835		93.73
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.67
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.64
KOG3617|consensus	1416		93.34
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.21
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.21
KOG2300|consensus	629		93.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.94
KOG2422|consensus	665		92.92
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.8
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.48
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.37
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.26
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.23
KOG2047|consensus	835		92.04
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.63
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.55
KOG3617|consensus	1416		91.46
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.45
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.36
COG3947	361	Response regulator containing CheY-like receiver a	91.27
COG4941	415	Predicted RNA polymerase sigma factor containing a	91.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.74
KOG2396|consensus	568		90.69
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.58
COG3947	361	Response regulator containing CheY-like receiver a	90.47
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.35
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.04
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.61
KOG0686|consensus	466		89.59
KOG2300|consensus	629		89.54
KOG1258|consensus	577		89.09
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	88.77
KOG0546|consensus	372		88.73
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.73
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.68
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	88.55
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.01
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.85
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.79
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.3
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.29
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.09
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.76
KOG0985|consensus	1666		86.4
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.39
KOG1914|consensus	656		86.21
KOG2581|consensus	493		86.17
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	86.14
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.83
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	85.73
KOG1839|consensus	1236		84.54
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.47
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	84.44
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	83.92
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	83.88
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.82
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	83.7
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.7
PHA02537	230	M terminase endonuclease subunit; Provisional	83.58
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	82.44
cd02656	75	MIT MIT: domain contained within Microtubule Inter	82.15
KOG2041|consensus	1189		82.09
PF12854	34	PPR_1: PPR repeat	81.85
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	81.51
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	81.39
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.82
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	80.6
KOG1839|consensus	1236		80.27

>KOG3203|consensus

Probab=99.98  E-value=2.9e-33  Score=201.37  Aligned_cols=102  Identities=48%  Similarity=0.825  Sum_probs=97.7

Q ss_pred             hhhccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCC
Q psy6284           6 RVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGG   85 (270)
Q Consensus         6 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g   85 (270)
                      +.+||+.|+|.|||+||+++++||||+.||.+|+|||||+|+|.+||||+|||.||.+|+++|.+|++++|+.|+||||+
T Consensus        12 ~g~~~~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~   91 (165)
T KOG3203|consen   12 RGNQWLAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGG   91 (165)
T ss_pred             cchHHHHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhhcCCCCCc
Confidence            33999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccCcchhhhhhh
Q psy6284          86 VSWTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        86 ~~~~~~~~l~~~~p~~~~~~~~  107 (270)
                      .+..+..++.+++|..++....
T Consensus        92 lk~~~~~q~~~rdp~~Iv~~AV  113 (165)
T KOG3203|consen   92 LKQTTADQLADRDPCRIVRLAV  113 (165)
T ss_pred             hhhhHHHHHhhhCHHHHHHHHH
Confidence            9988889999999999987665

>CHL00159 rpl13 ribosomal protein L13; Validated

Probab=99.96  E-value=4.8e-30  Score=188.27  Aligned_cols=100  Identities=33%  Similarity=0.430  Sum_probs=95.1

Q ss_pred             hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284           8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS   87 (270)
Q Consensus         8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~   87 (270)
                      ....++.+.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.+||.++.++.|++||+||||.+
T Consensus         7 ~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~htg~pGg~k   86 (143)
T CHL00159          7 PSKDYKNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVRHSGRPGGLK   86 (143)
T ss_pred             CCchhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEecCCCCCCcc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCcchhhhhhh
Q psy6284          88 WTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        88 ~~~~~~l~~~~p~~~~~~~~  107 (270)
                      ..++.+++.++|+.++....
T Consensus        87 ~~~~~~~~~r~P~~il~~aV  106 (143)
T CHL00159         87 IETFEELQNRLPNRIIEKAV  106 (143)
T ss_pred             cccHHHHhhcCHHHHHHHHH
Confidence            99999999999999887655

>PRK09216 rplM 50S ribosomal protein L13; Reviewed

Probab=99.96  E-value=7.8e-30  Score=187.93  Aligned_cols=100  Identities=29%  Similarity=0.471  Sum_probs=94.7

Q ss_pred             hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284           8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS   87 (270)
Q Consensus         8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~   87 (270)
                      ....++++.||||||+|++|||+|+.||+.|+|||||+|+|++||||+|+|+||+++.++|.+|..+.|++|++||||..
T Consensus         6 ~~~~~~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pGglk   85 (144)
T PRK09216          6 AKPAEVERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYRHSGYPGGLK   85 (144)
T ss_pred             CChhhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEEecccCCCCE
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCcchhhhhhh
Q psy6284          88 WTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        88 ~~~~~~l~~~~p~~~~~~~~  107 (270)
                      ..+..+++.+.|+.++....
T Consensus        86 ~~~~~~~~~r~P~~il~~aV  105 (144)
T PRK09216         86 EITFGELLAKKPERVIEKAV  105 (144)
T ss_pred             EecHHHHhhhCHHHHHHHHH
Confidence            99999999999999887665

>TIGR01066 rplM_bact ribosomal protein L13, bacterial type

Probab=99.96  E-value=1e-29  Score=186.64  Aligned_cols=100  Identities=31%  Similarity=0.545  Sum_probs=95.1

Q ss_pred             hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284           8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS   87 (270)
Q Consensus         8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~   87 (270)
                      +.+.++.+.||||||+|++|||+|+.||+.|+|||||+|||+.||||+|+|+||+++.+||.++..+.|++|++||+|..
T Consensus         4 ~~~~~~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k   83 (140)
T TIGR01066         4 KASDDKKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLK   83 (140)
T ss_pred             CChhhhcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEEEcccCCccc
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCcchhhhhhh
Q psy6284          88 WTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        88 ~~~~~~l~~~~p~~~~~~~~  107 (270)
                      ..+..+++.+.|+.++....
T Consensus        84 ~~~~~~~~~r~P~~ii~~aV  103 (140)
T TIGR01066        84 SRTFEEMIARKPERVLEHAV  103 (140)
T ss_pred             cccHHHhhhcCHHHHHHHHH
Confidence            99999999999998887655

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.

>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.3e-28  Score=179.10  Aligned_cols=99  Identities=29%  Similarity=0.477  Sum_probs=92.2

Q ss_pred             ccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch
Q psy6284           9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW   88 (270)
Q Consensus         9 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~   88 (270)
                      ...+..+.|+||||+|++|||||+.||..|+|+|||+|||++||||+|+|+|++++.+||.+...+.|++|++|++|...
T Consensus         7 k~~~~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~hs~~~gglk~   86 (148)
T COG0102           7 KPSEVERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYRHSGYPGGLKN   86 (148)
T ss_pred             CcccccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEEeeccCCcccc
Confidence            34458999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhc-cCcchhhhhhh
Q psy6284          89 TLAWQLHE-IDPTLDKACEE  107 (270)
Q Consensus        89 ~~~~~l~~-~~p~~~~~~~~  107 (270)
                      .+...+.. +.|+.++....
T Consensus        87 ~t~~~~~~~r~P~ri~~~AV  106 (148)
T COG0102          87 PTRGGPLAPRRPERILERAV  106 (148)
T ss_pred             cccccccccCCHHHHHHHHH
Confidence            88878877 88999887664

>PLN00205 ribisomal protein L13 family protein; Provisional

Probab=99.95  E-value=2.1e-28  Score=186.33  Aligned_cols=97  Identities=34%  Similarity=0.407  Sum_probs=91.9

Q ss_pred             ccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhh
Q psy6284          11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL   90 (270)
Q Consensus        11 ~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~   90 (270)
                      ...++.||||||+|++|||+|+.||+.|+|||||+|+|++||||+|||+||+++.+||.+|..+.|++||+|++|....+
T Consensus        11 ~~~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~   90 (191)
T PLN00205         11 NLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERS   90 (191)
T ss_pred             ccCCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCCccccc
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCcchhhhhhh
Q psy6284          91 AWQLHEIDPTLDKACEE  107 (270)
Q Consensus        91 ~~~l~~~~p~~~~~~~~  107 (270)
                      +.+++.+.|..++....
T Consensus        91 ~~~~~~r~P~~Il~kAV  107 (191)
T PLN00205         91 LKDQMAKDPTEVIRKAV  107 (191)
T ss_pred             HHHHhccCHHHHHHHHH
Confidence            99999999998887554

>cd00392 Ribosomal_L13 Ribosomal protein L13

Probab=99.95  E-value=1.8e-28  Score=174.74  Aligned_cols=91  Identities=41%  Similarity=0.717  Sum_probs=88.5

Q ss_pred             EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhc
Q psy6284          17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHE   96 (270)
Q Consensus        17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~   96 (270)
                      ||||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.++|.++..+.|++|++||++....+..+++.
T Consensus         1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~   80 (114)
T cd00392           1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHP   80 (114)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhh
Q psy6284          97 IDPTLDKACEE  107 (270)
Q Consensus        97 ~~p~~~~~~~~  107 (270)
                      +.|..++....
T Consensus        81 ~~P~~il~~aV   91 (114)
T cd00392          81 RAPERILKRAV   91 (114)
T ss_pred             hCHHHHHHHHH
Confidence            99999987665

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.

>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.93  E-value=7e-27  Score=170.21  Aligned_cols=91  Identities=45%  Similarity=0.761  Sum_probs=87.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhc
Q psy6284          17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHE   96 (270)
Q Consensus        17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~   96 (270)
                      |+||||+|++|||+|+.||+.|+|||||+|||++|+||+|+|+||+++.+||.+|..+.|++|++||++....+...+..
T Consensus         1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~   80 (128)
T PF00572_consen    1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHE   80 (128)
T ss_dssp             EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHC
T ss_pred             CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhh
Q psy6284          97 IDPTLDKACEE  107 (270)
Q Consensus        97 ~~p~~~~~~~~  107 (270)
                      ++|..++....
T Consensus        81 ~~P~~i~~~aV   91 (128)
T PF00572_consen   81 KDPSRILKRAV   91 (128)
T ss_dssp             SSHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            99999987665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....

>KOG0543|consensus

Probab=99.92  E-value=5.9e-25  Score=184.93  Aligned_cols=218  Identities=29%  Similarity=0.325  Sum_probs=179.3

Q ss_pred             HHHHHHHHcCCCCCcccCCCC------CCCeEEEecCceeeeeccc-cccccccCCCCCCCCcchhhhhhhhccCcchhh
Q psy6284          31 AKVISKHLQGQHKPIYHPLND------CGDHVIVMNSRHIALPGYE-WKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDK  103 (270)
Q Consensus        31 ~~~v~~~l~g~~k~~~~p~~d------~gd~v~v~n~~~~~~~g~~-~~~k~y~~~t~y~~g~~~~~~~~l~~~~p~~~~  103 (270)
                      ++.|.+++.|++....+...+      .|+...|+.+.++++..++ ++....+-.+.|.+|........++   |+..+
T Consensus       104 g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IP---PnA~l  180 (397)
T KOG0543|consen  104 GAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIP---PNATL  180 (397)
T ss_pred             CcEEEEEEEEEECCcceeccccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCC---CCceE
Confidence            455778888887765333322      2676778888899998887 5666666677898885555555555   77766


Q ss_pred             hhhhhccCCCCc-ccccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HH
Q psy6284         104 ACEELDKQDSDE-DEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AV  167 (270)
Q Consensus       104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~  167 (270)
                      .+..-  +..++ .....+.+...++++.|...++.|+.+|+.|+|..|...|.+|++.-++.               ..
T Consensus       181 ~yEVe--L~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~  258 (397)
T KOG0543|consen  181 LYEVE--LLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA  258 (397)
T ss_pred             EEEEE--EEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH
Confidence            65543  34444 56677777777899999999999999999999999999999999875432               24


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      +++|+|.|++++++|.+|+..|+++|.++|+|.+|+|++|.++..+|+|+.|+.+|+++++++|+|..+...|..|..+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCCc
Q psy6284         248 NIPLSP  253 (270)
Q Consensus       248 ~~~~~a  253 (270)
                      ..+.+.
T Consensus       339 ~~~~~k  344 (397)
T KOG0543|consen  339 REYEEK  344 (397)
T ss_pred             HHHHHH
Confidence            665544

>KOG0553|consensus

Probab=99.91  E-value=2.3e-23  Score=168.89  Aligned_cols=125  Identities=37%  Similarity=0.567  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      +....|+.++..|+.+++.++|.+|+..|++||.++|.++..|+|+|.+|.++|.++.|+.+|+.+|.+||.++++|.++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                      |.+|..+|++++|++.|+++|+++|+|...+..|..+..++++..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999998887

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.78  E-value=1e-17  Score=127.01  Aligned_cols=114  Identities=12%  Similarity=0.101  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      +...|..++..|++++|+.+|.+++..+|.+..++.++|.++..+|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      ++++|+..|+++++++|+++.++..++.+...++
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654

>KOG0548|consensus

Probab=99.78  E-value=4.1e-18  Score=147.56  Aligned_cols=120  Identities=32%  Similarity=0.532  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      +.+...+..|+.+|+.|+|..|+.+|+++|..+|+++.+|.|+|.||.+++.+..|+.+|+++++++|++.++|++.|.+
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a  435 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA  435 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            34778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +..+.+|++|++.|++++++||++.++...+..|...+..
T Consensus       436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~  475 (539)
T KOG0548|consen  436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG  475 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999886533

>KOG4234|consensus

Probab=99.76  E-value=1.7e-17  Score=127.26  Aligned_cols=127  Identities=33%  Similarity=0.566  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK  201 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  201 (270)
                      ..+..+..++..||.+|+.|+|.+|...|..||+++|..     ..+|.|+|.|+++++..+.|+.+|.++|.++|.+.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k  169 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK  169 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence            346778899999999999999999999999999999986     468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      |+.++|.+|..+..|++|+++|.+.++.+|...++...+..+-..+.+.-+.
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999999999998888776555544333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.75  E-value=6.2e-17  Score=140.46  Aligned_cols=116  Identities=24%  Similarity=0.404  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .++..|+.+|..|+|.+|+..|+++|+++|+++.+|+++|.|++.+|++++|+.++++++.++|.+..+|+++|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      |++++|+..|+++++++|++..+...++.|..++..
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887744

>KOG4648|consensus

Probab=99.72  E-value=2.8e-17  Score=135.64  Aligned_cols=117  Identities=48%  Similarity=0.743  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      +..+-+++++||.||++|.|++||.+|.+++..+|+++..+.|+|.+|++++.|..|..+|+.++.+|..+.+||.++|.
T Consensus        94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~  173 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ  173 (536)
T ss_pred             HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            34455689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      +...+|..++|.++++.+|+++|++.+....++.+..
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999888877776643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.69  E-value=2.4e-15  Score=112.81  Aligned_cols=114  Identities=9%  Similarity=0.006  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      .+.++..|..++..|++++|...|+-...++|.+...|+++|.|+..+|+|.+|+..|.+++.++|+++.++++.|.|++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHH
Q psy6284         212 SLNHFEDARKDILKVLALE---PNNKQAEIELAELNR  245 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~---p~~~~a~~~l~~~~~  245 (270)
                      .+|+.+.|++.|+.++..-   |++..........+.
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            9999999999999999987   444444444443333

>KOG4626|consensus

Probab=99.69  E-value=9e-17  Score=141.38  Aligned_cols=131  Identities=20%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      |..+-+.|..|+.+|+.+.||..|+++|++.|+++++|+|+|.++-..|+..+|..+|.+++.+.|+++.+.+++|.++.
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44444555666677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~  262 (270)
                      ++|.+++|...|.++++..|+...+..+|+.++...|+..+++.   ..++..|
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            77777777777777777777777777777777777777766665   4444444

>KOG0547|consensus

Probab=99.68  E-value=6.6e-16  Score=132.58  Aligned_cols=124  Identities=33%  Similarity=0.530  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284         124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      ...++...|..++.+||.+|+.|+|++||.+|++||+++|+.+..|.|++.||..+|++++.+++|.++++++|++.+++
T Consensus       107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl  186 (606)
T KOG0547|consen  107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL  186 (606)
T ss_pred             ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence            33456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLALE-PNNKQAEIELAELNRKL  247 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~  247 (270)
                      +|++.++..+|++.+|+.+..-..-++ =+|...--.+.+++.++
T Consensus       187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~  231 (606)
T KOG0547|consen  187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ  231 (606)
T ss_pred             HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence            999999999999999999987443322 23444444444444443

>KOG0548|consensus

Probab=99.68  E-value=4.2e-16  Score=135.17  Aligned_cols=113  Identities=31%  Similarity=0.455  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +...+++||..|..|+|+.|+.+|..+|.++|.+...|.|+..||..+++|++|+.+..+.+.++|+++++|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      .+|+|++|+..|.+.|+.+|+|...+..|..+.
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999987

>KOG4626|consensus

Probab=99.67  E-value=4.9e-16  Score=136.79  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+.+.|+.+...|.+++|...|.++++..|....++.|+|.+|..+|++++|+.+|+++|.++|....++.++|..|.
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k  433 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK  433 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence            56677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      .+|+...|+++|.+|+.++|...+|..+|+.++...|+-.+++.   ..+...|-+
T Consensus       434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            88888888888888888888888888888888888888877776   555555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.65  E-value=1.4e-14  Score=108.49  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ......|..++..|++++|+..|++++..+|.++.++.++|.++..++++++|+..+++++..+|.++..++.+|.++..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      .|++++|+..|+++++++|++.........+..
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999999999987766665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.64  E-value=8.8e-15  Score=124.22  Aligned_cols=124  Identities=23%  Similarity=0.206  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..++++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+++++|.++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...|++++|+++|+++++++|+++.....+ .+....+++.+++.
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~  186 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKE  186 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHH
Confidence            999999999999999999999998422222 22233444555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.63  E-value=1.1e-14  Score=135.65  Aligned_cols=122  Identities=25%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+...|..++..|++++|+..|+++++++|.+..+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++|+.+|+++++++|++..++..++.++..+|++.+++.
T Consensus       413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  454 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA  454 (615)
T ss_pred             CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            555555555555555555555555555555555555555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.62  E-value=8.6e-15  Score=116.77  Aligned_cols=111  Identities=17%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCF-LKMKN--YVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      ..+..|...|..+...|++++|+..|.+++.+.|+++.++.++|.++ ...|+  +++|...+++++..+|++..+++.+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L  150 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL  150 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence            34566788888888888888888888888888888888888888764 56666  4888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      |.+++..|++++|+..|+++++++|.+..-...+
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            8888888888888888888888887665444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.60  E-value=2.7e-14  Score=133.13  Aligned_cols=131  Identities=13%  Similarity=0.089  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..++..|++++|+..|+++++.+|+++.+++++|.+++.+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~  262 (270)
                      .+|++++|+..|+++++..|+++.++..++.++..+|++.+++.   ..+..+|
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999988877   4444444

>KOG0545|consensus

Probab=99.60  E-value=1.7e-14  Score=114.18  Aligned_cols=152  Identities=27%  Similarity=0.384  Sum_probs=128.8

Q ss_pred             ccCcchhhhhhhhccCCCCccc-ccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC-
Q psy6284          96 EIDPTLDKACEELDKQDSDEDE-ESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHD-  165 (270)
Q Consensus        96 ~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~-  165 (270)
                      .++|....-..++..+..++.+ .+.|.++..++......+.+.||.+|+.|+|.+|...|..|+..        .|.+ 
T Consensus       141 ~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~  220 (329)
T KOG0545|consen  141 QKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP  220 (329)
T ss_pred             hhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh
Confidence            3567766666667666666665 66789999999999999999999999999999999999999853        4554 


Q ss_pred             ---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-H
Q psy6284         166 ---------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-Q  235 (270)
Q Consensus       166 ---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~  235 (270)
                               ..++.|.+.|++..++|-++++.|..++..+|.|.+|||++|.+....-+.++|.++|.++|+++|.-. .
T Consensus       221 eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  221 EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence                     358999999999999999999999999999999999999999999999999999999999999999754 4


Q ss_pred             HHHHHHHHHHHh
Q psy6284         236 AEIELAELNRKL  247 (270)
Q Consensus       236 a~~~l~~~~~~~  247 (270)
                      +...|..+..+.
T Consensus       301 VsrElr~le~r~  312 (329)
T KOG0545|consen  301 VSRELRLLENRM  312 (329)
T ss_pred             HHHHHHHHHHHH
Confidence            445555554433

>KOG0550|consensus

Probab=99.60  E-value=5e-15  Score=124.94  Aligned_cols=119  Identities=32%  Similarity=0.488  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ  204 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  204 (270)
                      ....+.+++.|+..|+.|+|.+|.++|+.+|.++|++    ..+|.|+|.+..++|+..+|+.+|+.++.+||.+.+++.
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence            4456779999999999999999999999999999986    568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      ++|.|+..+++|++|+++|++|+++..+ ......+..+...|.
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            9999999999999999999999999876 555555555544443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=1.8e-14  Score=109.25  Aligned_cols=110  Identities=10%  Similarity=-0.007  Sum_probs=101.4

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         152 IEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       152 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      ...|+++++++|++   ++++|.++...|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35799999999886   668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         232 NNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       232 ~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +++.++..++.++..+|++.+++.   ..+..+|..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999887   555555543

>KOG1126|consensus

Probab=99.58  E-value=3.6e-15  Score=132.25  Aligned_cols=135  Identities=15%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      .+.|...||++--+++++.||++|++|+.++|.+.-+|..+|.=+..+.+|+.|..+|++|+..+|.+..|||.+|.+|.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccc
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLT  266 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~  266 (270)
                      ++++++.|.-.|++|+++||.|......++.++.++|...+|+.   ..+..+|-.+-
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999999999999999877   66666665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.57  E-value=1.5e-13  Score=108.16  Aligned_cols=135  Identities=14%  Similarity=0.058  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+....+.|..|+..|++..|...+++||+.+|++..+|..+|..|.++|+.+.|.+.|++|+.++|++..++.+.|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLAL--EPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      ++.+|++++|.+.|++|+..  -|.-...+.+++.|-.+.|++..+..   +.+-++|..
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            99999999999999998863  23456888899999888888887766   666555543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.56  E-value=1.9e-13  Score=109.02  Aligned_cols=125  Identities=18%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR-RSLNH--FEDAR  220 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~-~~~g~--~~~A~  220 (270)
                      ..++.++++..+.+++..+|++...|.++|.++..+|++++|+..|++++.++|++..+++.+|.++ ...|+  +++|+
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            3678899999999999999999999999999999999999999999999999999999999999985 67787  59999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccccc
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLTRD  268 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~  268 (270)
                      +.++++++++|++..++..++.++...|++.+|+.   ..+..+|+..+|.
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999988   6677888877764

>KOG1155|consensus

Probab=99.55  E-value=5e-14  Score=120.46  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE  217 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  217 (270)
                      .||-|.-+++.++|+.+|++|+.++|....+|..+|.=|+.+++...|++.|++|++++|.+..|||.+|++|..++-+.
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            58888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      =|+-+|++|+++-|+|+..|..||.|+.++++..+|++
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999988

>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic

Probab=99.54  E-value=4.9e-15  Score=109.60  Aligned_cols=78  Identities=15%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             EEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhcc
Q psy6284          18 HIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEI   97 (270)
Q Consensus        18 ~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~~   97 (270)
                      +||||+|++|||+|+.||+.|.            |||+|+|+||+++.+||.++..+.|+.|+...+.....+...++.+
T Consensus         1 ivIDA~~~vlGRLAs~IA~~L~------------~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r   68 (142)
T TIGR01077         1 TVIDGSGHILGRLASVVAKQLL------------NGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPR   68 (142)
T ss_pred             CEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhc
Confidence            4899999999999999999997            9999999999999999999999999999865555555466888889


Q ss_pred             Ccchhhhhhh
Q psy6284          98 DPTLDKACEE  107 (270)
Q Consensus        98 ~p~~~~~~~~  107 (270)
                      .|..++....
T Consensus        69 ~P~~il~~aV   78 (142)
T TIGR01077        69 APSRIFRRTV   78 (142)
T ss_pred             CHHHHHHHHH
Confidence            9998887665

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.

>PRK12370 invasion protein regulator; Provisional

Probab=99.53  E-value=3.1e-13  Score=124.27  Aligned_cols=123  Identities=12%  Similarity=-0.123  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.++.+++.
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~  418 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY  418 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            34455666666777777777777777777777777777777777777777777777777777777766666556666666


Q ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..++++++.+ |+++.++..++.++..+|+..+|..
T Consensus       419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~  462 (553)
T PRK12370        419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK  462 (553)
T ss_pred             ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence            677777777777776664 5666667777777767777666655

>PTZ00068 60S ribosomal protein L13a; Provisional

Probab=99.51  E-value=1.5e-14  Score=112.32  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhh
Q psy6284          16 IWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLH   95 (270)
Q Consensus        16 ~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~   95 (270)
                      .|+||||+|++|||+||.||+.|+            +||.|+|+||+++.+||.++.++.|++|..............++
T Consensus         4 ~w~vIDA~g~vLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~   71 (202)
T PTZ00068          4 KVIVIDCKGHLLGRLASVVAKELL------------LGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFH   71 (202)
T ss_pred             ceEEEECCCCcHHHHHHHHHHHHh------------CCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhc
Confidence            699999999999999999999999            99999999999999999999999999872222211111235666


Q ss_pred             ccCcchhhhhhh
Q psy6284          96 EIDPTLDKACEE  107 (270)
Q Consensus        96 ~~~p~~~~~~~~  107 (270)
                      .+.|+.++....
T Consensus        72 ~r~P~~Il~raV   83 (202)
T PTZ00068         72 HRAPSDIFWRTV   83 (202)
T ss_pred             ccCHHHHHHHHH
Confidence            677887776554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.50  E-value=1.2e-12  Score=95.49  Aligned_cols=108  Identities=16%  Similarity=0.209  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRR  206 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~  206 (270)
                      ..++..|..++..|++++|+..|.+++...|++   ..+++.+|.++...+++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            357888999999999999999999999999876   5789999999999999999999999999999875   6789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      |.++..+|++++|+..+.++++..|++..+....
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            9999999999999999999999999998776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=99.50  E-value=5.2e-13  Score=122.78  Aligned_cols=111  Identities=14%  Similarity=-0.015  Sum_probs=104.4

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      .+++++|+..++++++++|+++.++..+|.++..+|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         225 KVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       225 ~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++++++|.+..+...++.++...|++.+|+.
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence            9999999999887777777788898887776

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.50  E-value=7.3e-13  Score=127.54  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      +......|++++|+..|.++++.+|+ ..++.++|.++.++|++++|+..+++++.++|+++.+++.+|.++...|++++
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            33444559999999999999999996 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      |+..|+++++++|+++.++.+++.++..+|++.+++.   ..+..+|..
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999988876   555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.48  E-value=2.6e-12  Score=103.93  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD--NTYVKAYQRRAA  208 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~  208 (270)
                      ....+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++++|+..+++++...  +.....++.+|.
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  143 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL  143 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            355677889999999999999999999999999999999999999999999999999999999854  456778999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++...|++++|...|.+++..+|++..++..++.++...|++.++..
T Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999988876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.47  E-value=8.2e-13  Score=127.22  Aligned_cols=124  Identities=10%  Similarity=-0.033  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..+.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|++++.++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|+..|+++++++|++..+....+.+.....++..+..
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988877665544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=1.1e-12  Score=121.95  Aligned_cols=126  Identities=9%  Similarity=0.052  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+..+...|......|.+++|...+..++++.|++..+..+++.++.+++++++|+..+++++..+|++..+++.+|.+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +..+|++++|+..|++++..+|+++.++..++.++...|+..+|..
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~  209 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD  209 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999988765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=6.4e-13  Score=99.47  Aligned_cols=103  Identities=17%  Similarity=0.104  Sum_probs=99.5

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      ..|.+++..+|.+..+.+.+|.+++..+++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         233 NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       233 ~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...+..++.++...|++.+++.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999988866

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1126|consensus

Probab=99.46  E-value=6.8e-13  Score=118.01  Aligned_cols=133  Identities=16%  Similarity=0.116  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ....|+-.|.+|.++++++.|.-+|++|++++|.+.......|..+.++|+.++|+..+++|+.+||.++-.-|.+|.++
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence            35568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      +.++++++|+..++++-++-|++..++..++.++.++|+..-|+.   ..+..+|.
T Consensus       568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            999999999999999999999999999999999999999888877   34444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=3.3e-12  Score=103.31  Aligned_cols=124  Identities=20%  Similarity=0.235  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ...+...|..++..|++++|+..|.+++...  +.....+.++|.++...|++++|+..+.+++..+|.+..+++.+|.+
T Consensus        99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521        99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            3456778899999999999999999998753  45677889999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...|++++|+..+++++...|.++..+..++.+....|+..++..
T Consensus       179 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       179 YYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999989888888888888888888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.46  E-value=3.8e-13  Score=88.67  Aligned_cols=67  Identities=25%  Similarity=0.356  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-HFEDARKDILKVLALEP  231 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p  231 (270)
                      ++..|.++|.+++.++++++|+..|++++.++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555666666666666666666666666666666666666666666665 46666666666666655

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=1.5e-12  Score=110.54  Aligned_cols=119  Identities=14%  Similarity=0.093  Sum_probs=107.2

Q ss_pred             CCHHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYP---H-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK  221 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p---~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  221 (270)
                      +..+.++..+.++|...|   . .+..|+++|.++..+|++++|+.+|++++.++|+++.+|+.+|.++..+|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456888999999997444   3 367899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         222 DILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       222 ~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      .|+++++++|++..++..++.++...|++.+++.   ..+..+|..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999987   555556643

>KOG0551|consensus

Probab=99.45  E-value=8e-13  Score=108.96  Aligned_cols=111  Identities=35%  Similarity=0.438  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR  205 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  205 (270)
                      +.|+-+++.||.+|+.++|..|+..|.++|...-.+    ..+|.|||.|.+.+|+|..|+.+|.+++.++|.+.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            478889999999999999999999999999985444    5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      -|.|++.+.++++|...++..+.++-+...+....
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~  193 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR  193 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            99999999999999999988887765555444433

>KOG0547|consensus

Probab=99.44  E-value=5.5e-13  Score=114.86  Aligned_cols=124  Identities=23%  Similarity=0.229  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ++.+...|..+|-.|++-.|...|+++|.++|.+...|..+|.+|...++.++...+|+++..+||.++..||-+|++++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            55677789999999999999999999999999888888889999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      -++++++|+.+|++|+.++|++.-++..+.-++.+++...+++.
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888888887766655

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.44  E-value=7.1e-13  Score=111.75  Aligned_cols=125  Identities=20%  Similarity=0.191  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ....+...|..+.+.|++++|+..|+++++.+|++..+...++.++...|+++++...+.......|.++..+..+|.++
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            45568889999999999999999999999999999999999999999999999999999998888888889999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+|++++|+..|+++++.+|+|+.+...++.++...|+..+|..
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=5.1e-12  Score=101.37  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|...+..|+|..|+..+.++..+.|++..+|..+|.+|.++|++++|...|.+++++.|..+.+..++|+.+.-
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence            34555899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|+++.|...+..+...-+.+..+..+|+.+....|++.++..
T Consensus       181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            9999999999999999999999999999999999999877755

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.44  E-value=8.2e-12  Score=97.62  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR  205 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  205 (270)
                      ...+..++..|..+...|++++|+.+|+++++..|+.   ..++.++|.++..+|++++|+..+.+++..+|.+..++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3456678999999999999999999999999987653   5799999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy6284         206 RAAARRSLNH--------------FEDARKDILKVLALEPNN  233 (270)
Q Consensus       206 ~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~  233 (270)
                      +|.++..+|+              +++|++.+++++.++|++
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999988              688999999999999988

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.44  E-value=3.2e-12  Score=119.66  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS----AEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .|..+...|++++|+..|.+++...|+++.+++++|.++..+|++++    |+..|++++.++|++..++..+|.++...
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            35566677777777777777777777777777777777777777764    67777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++|+..++++++++|+++.++..++.++..+|++.+++.
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~  339 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD  339 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            777777777777777777777777777777777777766655

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.44  E-value=3e-12  Score=100.84  Aligned_cols=124  Identities=17%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~  209 (270)
                      ...+.-++..|.+.|+.+.|-+.|++|++++|++.++++|.|..++.+|++++|...|++|+..  .+.-+.++-++|.|
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C  148 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC  148 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence            4567778999999999999999999999999999999999999999999999999999999964  35678899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+.|+++.|..+|+++|+++|+++.+...+...+.+-|++..+-.
T Consensus       149 al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         149 ALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999999999999999999999999999999999887754

>KOG4642|consensus

Probab=99.44  E-value=4e-13  Score=105.99  Aligned_cols=114  Identities=32%  Similarity=0.428  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+++.|+.+|....|..|+.+|.++|.++|..+..|.|+|.||+++++++.+..+|.+++.++|+..+++|.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALEPN-----NKQAEIELAELN  244 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~  244 (270)
                      .....|++|+..++++..+-..     -..+...|..+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999654321     234555555553

>PRK15331 chaperone protein SicA; Provisional

Probab=99.44  E-value=6.2e-12  Score=94.92  Aligned_cols=116  Identities=9%  Similarity=-0.023  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      +..+..|..+|.+|++++|...|+-..-++|.++..+.++|.|+..+++|++|+..|..+..++++++...|..|.|+..
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +|+.+.|+.+|+.++. .|++..........+..+.+
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            9999999999999999 68888777766655554433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.43  E-value=3.8e-12  Score=87.65  Aligned_cols=99  Identities=32%  Similarity=0.425  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+...|..++..|++++|+..+.++++..|.+..+++.+|.++...+++++|+..+++++...|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q psy6284         214 NHFEDARKDILKVLALEPN  232 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~  232 (270)
                      |++++|...+.++++.+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.43  E-value=4.6e-13  Score=88.26  Aligned_cols=67  Identities=31%  Similarity=0.453  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p  197 (270)
                      .+..+...|..++..|+|++|+.+|+++++++|+++.+++++|.|+..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35678999999999999999999999999999999999999999999999 79999999999999998

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.43  E-value=4.1e-12  Score=118.92  Aligned_cols=132  Identities=13%  Similarity=0.035  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGE----AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~----A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      ...+...|..++..|++++    |+..|++++.++|++..++.++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La  325 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3456678999999999996    899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      .++...|++++|+..|++++..+|++..+...++.++..+|+..+++.   ..+..+|.
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999999888888999999999988877   34444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.43  E-value=4.3e-12  Score=104.14  Aligned_cols=124  Identities=19%  Similarity=0.239  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~  205 (270)
                      +..++..|..++..|+|++|+..|.+++...|.++   .+++.+|.++..++++++|+..+++++...|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            44678899999999999999999999999999876   68899999999999999999999999999998776   7999


Q ss_pred             HHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCCCCcch
Q psy6284         206 RAAARRSL--------NHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       206 ~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~~~a~~  255 (270)
                      +|.++...        |++++|++.|+++++.+|++..+.                 ..++.++...|++.+++.
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99999876        889999999999999999997654                 245666777888888877

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624|consensus

Probab=99.43  E-value=1.8e-12  Score=107.49  Aligned_cols=113  Identities=26%  Similarity=0.356  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .++..++.|+.++-.|++..|+..|..|++.+|++..+++.+|.+|+.+|+...|+.++.++|++.|+...|...+|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALEPNN---KQAEIELAEL  243 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~  243 (270)
                      .++|+++.|..+|.++|+-+|++   .++...++.+
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence            99999999999999999999954   4555555544

>KOG1155|consensus

Probab=99.42  E-value=2.7e-12  Score=110.02  Aligned_cols=123  Identities=20%  Similarity=0.159  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..|.-.|..+...++...|+..|++|++++|.+..+|+.+|.+|--++-..=|+-.|++|+.+.|+++..|..+|.||.+
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK  444 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++.++|+++|.+++...-.+..++..|+.++.+++...+|..
T Consensus       445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999877755

>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed

Probab=99.41  E-value=3.9e-13  Score=99.90  Aligned_cols=76  Identities=14%  Similarity=-0.008  Sum_probs=61.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchh----hhh
Q psy6284          17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWT----LAW   92 (270)
Q Consensus        17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~----~~~   92 (270)
                      -+||||+|++|||+|+.||+.|+            +||+|+|+||+++.+||.++..+.+  +++|+ +....    +..
T Consensus         4 ~~viDA~~~vlGRLAs~IA~~L~------------~Gd~VVViNa~kv~~tG~K~~~~~~--y~~~~-~~k~~~np~~~~   68 (146)
T PRK06394          4 MVVIDAEGQILGRLASYVAKRLL------------EGEEVVIVNAEKAVITGNRERVIEK--YKQRR-ERGSHYNPYRNG   68 (146)
T ss_pred             cEEEECCCCchHHHHHHHHHHHh------------CCCEEEEEechheEecCchhhheee--EeCCC-CCcccCCCCChH
Confidence            47999999999999999999999            5999999999999999999766444  44444 33333    457


Q ss_pred             hhhccCcchhhhhhh
Q psy6284          93 QLHEIDPTLDKACEE  107 (270)
Q Consensus        93 ~l~~~~p~~~~~~~~  107 (270)
                      .++.++|..++....
T Consensus        69 ~~~~r~P~~il~~AV   83 (146)
T PRK06394         69 PKYPRRPDRIFKRTI   83 (146)
T ss_pred             HhhhcCHHHHHHHHH
Confidence            777888988877654

>KOG0376|consensus

Probab=99.41  E-value=3.8e-13  Score=116.10  Aligned_cols=117  Identities=36%  Similarity=0.529  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..++++++.+++.+.|+.|+..|.+||+++|+.+..+.+++.++++.++|..|+.++.++++++|...++|+++|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .++++.+|+.+|++...+.|+++.+...+.+|.....
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999976543

>KOG1125|consensus

Probab=99.41  E-value=1.3e-12  Score=114.59  Aligned_cols=120  Identities=16%  Similarity=0.209  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ++...-.|..|+-.|+|++|+.+|+.||..+|++..+|..+|..+..-.+..+|+..|++|+.+.|.+..++|++|.++.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            34455689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhCCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPN----------NKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~----------~~~a~~~l~~~~~~~~~~~  251 (270)
                      .+|.|++|.++|-.||.+.+.          +..+|..|..++..++++.
T Consensus       510 NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  510 NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            999999999999999999876          2358888988888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.40  E-value=9.7e-12  Score=102.06  Aligned_cols=123  Identities=16%  Similarity=0.048  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHhcCCCCHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---FFANRALCFLKM--------KNYVSAEADCTASLKLDNTYVK  201 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~  201 (270)
                      ..+...|..++..|++++|+..|+++++..|+++.   +++.+|.++...        +++++|+..+++++..+|++..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            35778899999999999999999999999998876   799999999987        8899999999999999998865


Q ss_pred             HH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 AY-----------------QRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++                 +.+|.++...|++++|+..|++++...|++   +.++..++.++..+|++.++..
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            42                 467889999999999999999999997764   5899999999999999998877

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=1.7e-11  Score=104.62  Aligned_cols=118  Identities=14%  Similarity=0.038  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY--VSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      .....+..+|..+...| ++++|+..+++++..+|.+..+|++++.++.++++.  ++++..+++++.++|.|..+|..+
T Consensus        69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R  148 (320)
T PLN02789         69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR  148 (320)
T ss_pred             hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34557888899999888 689999999999999999999999999999999874  788999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      |.++..+|++++|++++.++|++||.|..||..++.+...+
T Consensus       149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        149 QWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.38  E-value=4.4e-11  Score=93.13  Aligned_cols=104  Identities=19%  Similarity=0.155  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      .+..+...|..++..|+|++|+..|.+++.+.|+.   +.+++++|.++..+|++++|+..|++++.++|.+..++..+|
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            56678899999999999999999999999987763   458999999999999999999999999999999999999999


Q ss_pred             HHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy6284         208 AARR-------SLNHFE-------DARKDILKVLALEPNNK  234 (270)
Q Consensus       208 ~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  234 (270)
                      .++.       .+|+++       +|+..|++++..+|++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999       777766       66666777888888664

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=5.6e-12  Score=94.76  Aligned_cols=97  Identities=13%  Similarity=0.061  Sum_probs=92.4

Q ss_pred             HhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284         159 IQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       159 l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  237 (270)
                      ..+. ++..+..|.+|..++..|++++|...|+-+..+||.+...|+++|.++..+|++++|+..|.+++.++|+|+.+.
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            4567 788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcch
Q psy6284         238 IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       238 ~~l~~~~~~~~~~~~a~~  255 (270)
                      .+++.|+..+|+...|..
T Consensus       107 ~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363        107 WAAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            999999999999877766

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=1.1e-11  Score=105.77  Aligned_cols=123  Identities=12%  Similarity=0.062  Sum_probs=111.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HH
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF--ED  218 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~--~~  218 (270)
                      +...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..+++++..+|.+..+|+.++.++..+|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            566789999999999999999999999999999999998 689999999999999999999999999999999874  78


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      ++..+.++++++|.|..+|..++.++..+|.+.+++.   ..+..+|.+
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N  175 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence            8999999999999999999999999999999888776   444445544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.35  E-value=2.9e-12  Score=87.88  Aligned_cols=82  Identities=24%  Similarity=0.357  Sum_probs=74.1

Q ss_pred             HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK  221 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  221 (270)
                      .+|+|+.|+..|+++++..|.  +...++++|.|++++|+|++|+..+++ +..+|.+...++.+|.++..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  467888899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHH
Q psy6284         222 DILKV  226 (270)
Q Consensus       222 ~~~~a  226 (270)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.35  E-value=3.5e-11  Score=114.77  Aligned_cols=123  Identities=11%  Similarity=0.101  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..+...|++++|+..|+++++.+|.++.++.++|.++...+++++|+..+++++..+|++.. ++.+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            3457788999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|+..|+++++++|++..++..++.++...+...+++.
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~  171 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG  171 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence            99999999999999999999999999999999988777776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=2e-11  Score=121.25  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=111.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--------------H
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK--------------A  202 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------a  202 (270)
                      ..|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++.++|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45889999999999999999999999999999999999999999999999999999999997643              1


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ...+|.++...|++++|+..|+++++++|++..++..++.++...|++.+++.   ..+..+|.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            23457888899999999999999999999999999999999999999988877   44444554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=3.4e-11  Score=119.66  Aligned_cols=121  Identities=20%  Similarity=0.151  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-----  209 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-----  209 (270)
                      ....|..+++.|++++|+..|++++..+|.+..+++++|.++..+|++++|+..|++++.++|++..++..++.+     
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            345688899999999999999999999999999999999999999999999999999999999988777655444     


Q ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCC
Q psy6284         210 -------------------------------------RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLS  252 (270)
Q Consensus       210 -------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~  252 (270)
                                                           +...|++++|++.|+++++++|+++.++..++.++..+|++.+
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                                 4467999999999999999999999999999999999999988


Q ss_pred             cch
Q psy6284         253 PIK  255 (270)
Q Consensus       253 a~~  255 (270)
                      ++.
T Consensus       514 A~~  516 (1157)
T PRK11447        514 ADA  516 (1157)
T ss_pred             HHH
Confidence            877

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.33  E-value=4e-11  Score=115.39  Aligned_cols=122  Identities=17%  Similarity=0.169  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.++..
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4456667777777888888888888888788877778888888877777 778888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..|+++++.+|.++.++..++.++.+.|++.+++.
T Consensus       850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  892 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK  892 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888888888888888888888888888777665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.32  E-value=6.3e-11  Score=113.99  Aligned_cols=125  Identities=22%  Similarity=0.121  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  203 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL  203 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...|++++|+..|++++..+|++..++..++.++...|++.++..
T Consensus       204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~  248 (899)
T TIGR02917       204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK  248 (899)
T ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999888766

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076|consensus

Probab=99.32  E-value=7.3e-11  Score=108.34  Aligned_cols=124  Identities=16%  Similarity=0.126  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...||.+|-+|++++|+..+.++|+.+|.++.+|+.+|.+|..+|+.+.|+...-.|-.++|.+..-|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++..|+-+|.+||+.+|.+.......+.++.++|....|+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~  262 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME  262 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence            99999999999999999999999999999999999999998887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.30  E-value=1.5e-11  Score=79.99  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~  234 (270)
                      .+|..++..|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4666667777777777777777777777777777777777777777777777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.30  E-value=2e-10  Score=95.29  Aligned_cols=111  Identities=12%  Similarity=0.018  Sum_probs=99.1

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHH
Q psy6284         133 VYSKEQGNKL-VKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQR  205 (270)
Q Consensus       133 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~  205 (270)
                      ...++.+..+ ++.|+|++|+..|++.+...|+.   +.+++.+|.+|+..|++++|+..|.+++...|+   .+.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3456677776 67899999999999999999998   579999999999999999999999999998886   5779999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      +|.++..+|++++|+..|+++++..|+...+......+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999998776655443

>KOG4555|consensus

Probab=99.30  E-value=2.3e-10  Score=82.41  Aligned_cols=103  Identities=22%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQ  204 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~  204 (270)
                      ++....+-.+|..+...|+.+.|++.|.++|.+.|..+.+|+|+|.++.-+|+.++|+.++++++++..+.    ..+|.
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v  119 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV  119 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34445566779999999999999999999999999999999999999999999999999999999987543    45789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         205 RRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       205 ~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      .+|.+|..+|+.+.|..+|+.+-++..
T Consensus       120 QRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  120 QRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            999999999999999999999887743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.29  E-value=1.2e-10  Score=102.60  Aligned_cols=121  Identities=14%  Similarity=0.095  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-VKAYQRRAAARRS  212 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~  212 (270)
                      .+...|..++..|++++|+..|.++++..|++..+++.+|.++...|++++|+..+++++..+|.+ ..++..++.++..
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            355678888888999999999999998888888888999999999999999999999999888876 4567788888999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..++++++.+|+...+ ..++.++.+.|++.+++.
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~  303 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQA  303 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHH
Confidence            999999999999999988877655 778888888888877766

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.29  E-value=8.2e-11  Score=103.61  Aligned_cols=121  Identities=16%  Similarity=0.104  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      +...+..+.+.|++++|+..|.+++...|.+.     ..+.++|.++...+++++|+..|++++..+|++..+++.+|.+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  223 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL  223 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence            33444444555555555555555554444331     1334455555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNN-KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...|++++|++.|++++..+|.+ ..++..++.++...|+..+++.
T Consensus       224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555555555555544 2344445555555555544444

>KOG1125|consensus

Probab=99.26  E-value=3e-11  Score=106.22  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ++...||.+|...++|+.|+.||+.||..+|++...|.++|-++..-.+.++|+..|++|+++.|+...++++|+....-
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN  510 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN  510 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence            36777888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcch
Q psy6284         247 LNIPLSPIK  255 (270)
Q Consensus       247 ~~~~~~a~~  255 (270)
                      +|-+.+|+.
T Consensus       511 lG~ykEA~~  519 (579)
T KOG1125|consen  511 LGAYKEAVK  519 (579)
T ss_pred             hhhHHHHHH
Confidence            999888877

>KOG0553|consensus

Probab=99.26  E-value=2.7e-11  Score=99.04  Aligned_cols=97  Identities=28%  Similarity=0.280  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      +-+-+-|.=+++.++|.+|+..|.+||.++|.++..|.++|.+|.++|+++.|+++++.||.+||....+|..|+.++.-
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcch---HhhhcCCC
Q psy6284         247 LNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       247 ~~~~~~a~~---~~~~~~~~  263 (270)
                      +|++.+++.   +.+-.+|-
T Consensus       162 ~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCC
Confidence            999998877   45555553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.24  E-value=4e-11  Score=77.92  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (270)
                      ..|..++..|+|++|+..|+++++..|+++.+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5699999999999999999999999999999999999999999999999999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.21  E-value=4.4e-10  Score=97.39  Aligned_cols=123  Identities=15%  Similarity=0.082  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ...+-.+..++..|+++.|+..++..+...|+|+-.+..++.+++..++..+|++.+++++.++|+.....+++|.+|..
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~  386 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++.+|+..++..+.-+|+|+..|..|+.++.++|+-.++..
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence            9999999999999999999999999999999999999876644

>KOG1173|consensus

Probab=99.18  E-value=2.4e-10  Score=100.36  Aligned_cols=76  Identities=20%  Similarity=0.151  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      +.|+|.++.+++.+++|+..++++|.+.|.++.+|-..|.+|..+|+++.|++.|.++|.++|+|..+...|+.+.
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555555555555555555555444443

>KOG1173|consensus

Probab=99.18  E-value=2.8e-10  Score=99.90  Aligned_cols=132  Identities=18%  Similarity=0.199  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----C---CCHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLD----N---TYVKAYQ  204 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p---~~~~a~~  204 (270)
                      ....=.|..+...+++..|..+|.+|+.+.|.+ .. +..+|.+.+..+.|.+|+.+|++++..-    +   .....+.
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv-~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV-LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh-hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            345667999999999999999999999999986 33 3347888889999999999999998321    1   2445689


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284         205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                      ++|.++.+++.+++|+..|+++|.+.|.+..++..++-++..+|++..|+.   ..+..+|-.+
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            999999999999999999999999999999999999999999999999988   6777777653

>KOG0624|consensus

Probab=99.17  E-value=1.8e-09  Score=89.97  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=111.3

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284         119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT  198 (270)
Q Consensus       119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  198 (270)
                      ....++.+..+..-..+.++...++-.|++..|+.+.+..|++.|.+..++-.+|.||...|+...||.+...+-++..+
T Consensus       142 ~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D  221 (504)
T KOG0624|consen  142 VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD  221 (504)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence            33445555666667778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      +..++|.++..++..|+.+.++...+.||++||++...+-....
T Consensus       222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK  265 (504)
T ss_pred             chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence            99999999999999999999999999999999999865544333

>KOG2003|consensus

Probab=99.17  E-value=1.2e-10  Score=99.99  Aligned_cols=124  Identities=17%  Similarity=0.074  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+.++|+..|-.|++++|...|+++|.-+..-..+++|.|+.+-.+|++++|+.+|-+.-.+--++..+++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44567889999999999999999999999888888999999999999999999999999988888889999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+.+..+|++.+.++..+-|+++.+...|+.++-+-|+..+++.
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence            99999999999999999999999999999999999999988877

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.16  E-value=1.5e-09  Score=80.35  Aligned_cols=107  Identities=20%  Similarity=0.225  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRR  206 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~  206 (270)
                      ..++..|...++.|+|.+|++.|+......|..   ..+.+.++.+|++.+++++|+..+++-++++|.++   -++|.+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            468888999999999999999999999888765   57999999999999999999999999999999875   489999


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         207 AAARRSLNH---------------FEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       207 g~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      |.+++.+..               ...|...|+++++.-|++.-+...
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            999999887               899999999999999998876543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.3e-09  Score=89.68  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      .+++.|...|..|+..|++..|...|.+|+++.|+++..+..+|.+++...+   ..++...+++++.+||.+..+.+.+
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            4577899999999999999999999999999999999999999999888654   6789999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      |..++..|+|.+|+..++..++..|.+..-...+.......
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA  274 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999998877666666555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.15  E-value=1.4e-10  Score=97.78  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ...+......+...++++++...+.++....  +.++..|..+|.++.+.|+.++|+.++++++.++|++..+...++.+
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3445566778899999999999999977655  67889999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +...|+++++.+.+....+..|+++..+..++.++..+|++.+|+.   ..+..+|.+
T Consensus       190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999987   444445543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=1.1e-09  Score=102.23  Aligned_cols=107  Identities=9%  Similarity=-0.058  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      +.+......+..+++.+.+++|+..+++++..+|++..+++.+|.++.++|++++|+..|++++..+|++..++..+|.+
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~  197 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS  197 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            44667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                      +...|+.++|...|+++++..-+-...
T Consensus       198 l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        198 LTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            999999999999999999987665554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.14  E-value=6.4e-10  Score=89.40  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      ......+...|+-+.+.....++....|.+..+....|......|+|.+|+..++++..++|+++++|.-+|.+|.+.|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            44577788889989999999998889999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++|...|.+++++.|+++.+..+++..+..-|++..+..
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999877655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.13  E-value=4.2e-10  Score=74.80  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=50.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       173 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      ..+|+..+++++|+.++++++.++|+++.+++.+|.++..+|++.+|+++|+++++.+|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3456677777777777777777777777777777777777777777777777777777777766665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.13  E-value=1.3e-09  Score=103.46  Aligned_cols=123  Identities=9%  Similarity=-0.085  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ...+..+...+++|+|..|+..|.++++.+|.++.+...++.++...|++++|+..|++++.-+|....+...+|.++..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999964444888888899999999999999994344455555555889999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +|++++|++.|+++++.+|+++.++..++.++...++..+++.
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            9999999999999999999999999999888888888888777

>KOG4162|consensus

Probab=99.12  E-value=7.9e-10  Score=100.21  Aligned_cols=122  Identities=21%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .|...+..+.+.++-++|..+..++-.++|..+..|+.+|.++...|.+.+|.+.|..++.+||+++.....+|.++...
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            35555666666666666666666666666666666666667766667777777777777777777666666667766666


Q ss_pred             CCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARK--DILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~--~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |+..-|..  .+..++++||.++++|+.++.+..++|+..+|..
T Consensus       732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence            66665555  6666667777777777777777666666665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.11  E-value=2.8e-09  Score=96.59  Aligned_cols=134  Identities=15%  Similarity=0.090  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhc--CC
Q psy6284         131 SAVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--------NYVSAEADCTASLKL--DN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~p  197 (270)
                      .|..++.+|..++..++   +..|+.+|++|++++|++..++..++.++....        +...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            46677888888887665   889999999999999999999999999886642        244566666676664  77


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                      ..+.+|..+|..+...|++++|...|++++.++| +..++..++.++...|++.+|+.   +.+..+|..-
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            7889999999999999999999999999999999 58899999999999999999887   7777777643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.11  E-value=6.9e-10  Score=96.54  Aligned_cols=95  Identities=21%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      +...|...+..++|++|+..|++++.++|++..+++.+|.++..+|++++|+.++++++.++|++..++..++.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcch---HhhhcCCC
Q psy6284         249 IPLSPIK---VDFLHNPY  263 (270)
Q Consensus       249 ~~~~a~~---~~~~~~~~  263 (270)
                      ++.+|+.   ..+..+|.
T Consensus        85 ~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         85 EYQTAKAALEKGASLAPG  102 (356)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9988877   44555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=6e-10  Score=87.24  Aligned_cols=114  Identities=21%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      .-++|..++++|+.|=..|-+.-|...|.+++.+.|.-+.+++.+|.-+...|+|+.|.+.|+.++++||.+--++.++|
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      .+++--|++.-|.++|.+-.+-||+|+---..|=
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY  174 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY  174 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence            9999999999999999999999999985444333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.11  E-value=2.7e-09  Score=101.89  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=116.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  216 (270)
                      ..-.++.-.|++++|+..|.+++..+|....++.++|.++...+++++|+..|++++.++|.++.+++.+|.++...|++
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            34566778899999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ++|+..++++++.+|++.. +..++.++...|++.+++.   ..+..+|.
T Consensus       100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049        100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999 9999999999999988877   44445554

>KOG0550|consensus

Probab=99.11  E-value=1.6e-10  Score=98.07  Aligned_cols=125  Identities=21%  Similarity=0.182  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------------VFFANRALCFLKMKNYVSAEADCTASLKLDNT  198 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  198 (270)
                      .++.++-+|.+++-..+.+.|+.+|+++|.++|+..            ..+-..|.-.++.|.+..|.++|..+|.++|+
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~  281 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS  281 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence            467788899999999999999999999999999863            46888999999999999999999999999996


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         199 Y----VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 ~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +    .+.|.++|.+..++|+.++|+.+++.++++||....++...+.|+..+++..+++.
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5    56799999999999999999999999999999999999999999999988877765

>KOG1128|consensus

Probab=99.10  E-value=3.1e-10  Score=102.33  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .....|...+.+++|++|.++++..++++|-....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+|..+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence            34445666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++..+|...++++++.+-++...|.+...+..+.|+...++.
T Consensus       567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            999999999999999999999999999999999999988877

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.08  E-value=8e-10  Score=86.00  Aligned_cols=115  Identities=11%  Similarity=0.030  Sum_probs=98.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSL  213 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~  213 (270)
                      .+.+|-.+.|..+...+...+...+.+  ..+++++|.++..++++++|+..|++++.+.|+   .+.+++++|.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            455666777888888887766666655  668899999999999999999999999998775   345899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HhCCCCCc
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNR-------KLNIPLSP  253 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-------~~~~~~~a  253 (270)
                      |++++|+..|++++.++|.+..++..++.++.       .+|++..+
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A  132 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIA  132 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHH
Confidence            99999999999999999999999999999998       56665433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.08  E-value=5.2e-10  Score=73.23  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      ..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3444555555555555555555555555555555555555555555555555555444444443

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.08  E-value=5.1e-10  Score=73.29  Aligned_cols=67  Identities=33%  Similarity=0.328  Sum_probs=62.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      +++.|+|++|+..|++++..+|++..+++.+|.|+++.|++++|...+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999999999999999999998888777665

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.07  E-value=1.3e-09  Score=74.66  Aligned_cols=88  Identities=28%  Similarity=0.311  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      +++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcch
Q psy6284         248 NIPLSPIK  255 (270)
Q Consensus       248 ~~~~~a~~  255 (270)
                      |+...+..
T Consensus        82 ~~~~~a~~   89 (100)
T cd00189          82 GKYEEALE   89 (100)
T ss_pred             HhHHHHHH
Confidence            98777655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.06  E-value=8.8e-10  Score=95.80  Aligned_cols=68  Identities=18%  Similarity=0.261  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---FANRALCFLKMKNYVSAEADCTASLKL  195 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~  195 (270)
                      ....+..+.+.|..++..|+|++|+..|+++|+++|++..+   |+|+|.||..+|++++|+.++++++.+
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34556788888999999999999999999999999998854   999999999999999999999999987

>PRK11906 transcriptional regulator; Provisional

Probab=99.05  E-value=4.8e-09  Score=91.37  Aligned_cols=129  Identities=7%  Similarity=-0.119  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCC
Q psy6284         135 SKEQGNKLVKEG---KWGEAIEKYNVAI---QTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       135 ~~~~g~~~~~~g---~~~~A~~~y~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~  199 (270)
                      ++.+|...+.++   ..+.|+.+|.+|+   +++|....+|..+|.|+...         .+-.+|.+..+++++++|.+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            455666665554   4678999999999   99999999999999999875         23567899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      +.+++.+|.++...++++.|...|++|+.++|+...+++..+.+....|+..++..   +.+..+|.
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            99999999999999999999999999999999999999999999999999888877   55666664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.05  E-value=3e-09  Score=77.28  Aligned_cols=90  Identities=22%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIE  239 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~  239 (270)
                      +..++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   6799999999999999999999999999999986   678999


Q ss_pred             HHHHHHHhCCCCCcch
Q psy6284         240 LAELNRKLNIPLSPIK  255 (270)
Q Consensus       240 l~~~~~~~~~~~~a~~  255 (270)
                      ++.++..+|+..++..
T Consensus        82 ~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        82 LGMSLQELGDKEKAKA   97 (119)
T ss_pred             HHHHHHHhCChHHHHH
Confidence            9999999999988877

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.04  E-value=2.4e-09  Score=71.11  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=65.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...+++.++|++|+..+++++.++|+++.++..+|.|+..+|++.+|+.+++++++..|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999888776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.04  E-value=1.5e-08  Score=82.57  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRR  206 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~  206 (270)
                      ...++.+..+++.|+|..|...|...+...|+.   +.++|=||.+++.+|+|++|...|..++.-.|++   +.+++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            348899999999999999999999999999986   6799999999999999999999999999988865   5689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      |.+...+|+.++|...|+++++.-|+.+.+......+
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999887765544

>KOG2002|consensus

Probab=99.02  E-value=6.1e-09  Score=96.70  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ..++.++..|..+..+|+|++|-.+|.+++..+|++ ...++.+|..+++.|+++.|+.+|++++...|++.....-+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            456779999999999999999999999999999998 7889999999999999999999999999999999999999999


Q ss_pred             HHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         209 ARRSLN----HFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       209 ~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      .|...+    .-+.|...+.++++..|.|.++|..++.++..
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            998886    67889999999999999999999999998754

>KOG1129|consensus

Probab=99.02  E-value=8.4e-10  Score=91.35  Aligned_cols=115  Identities=15%  Similarity=0.129  Sum_probs=101.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN---TYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~g~  215 (270)
                      |.-||-.++.+.|+.+|++.|.+--.++.+++|+|+|.+.-++++-++..|.+++....   .-...||++|.+....|+
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence            33456667788888888888888778889999999999999999999999999997643   457799999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +.-|..+|+-||.-||++.+++++|+.+..+.|+-.++
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            99999999999999999999999999999998887665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.01  E-value=5.6e-09  Score=79.78  Aligned_cols=96  Identities=24%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q psy6284         148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN----------YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH--  215 (270)
Q Consensus       148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--  215 (270)
                      |+.|.+.+......+|.+++.+++=|.+++.+.+          +++|+.-|++||.++|+...|++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999999888754          4678999999999999999999999999988765  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         216 ---------FEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       216 ---------~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                               |++|..+|++|...+|+|...+..|..+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     8899999999999999999998888766

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=3.2e-08  Score=75.02  Aligned_cols=127  Identities=16%  Similarity=0.045  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VK  201 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~  201 (270)
                      ....+...+......+..+++..+...+.+.+...|..   ..+.+.+|.+++..|++++|+..|+.++...|+.   ..
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            34445566777777778888888888888888888887   5678888888888888888888888888876554   45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.+++|.++...|++++|+..++. +.-.+-.+.+...++.++...|+..++..
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            788888888888888888888865 33445566788888888888888777654

>KOG1308|consensus

Probab=99.00  E-value=3e-10  Score=94.43  Aligned_cols=120  Identities=28%  Similarity=0.426  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      ....+..+.+...+-.+..++..|.+++|+..|..+|.++|....+|..+|.++++++....|+.+|..++.++|+..+.
T Consensus       105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~  184 (377)
T KOG1308|consen  105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG  184 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc
Confidence            34456678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      |-.+|.+...+|++++|..+|..+++++-+ ..+-..+..+
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV  224 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEV  224 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHh
Confidence            999999999999999999999999998743 3333334444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.00  E-value=2.4e-08  Score=82.21  Aligned_cols=112  Identities=19%  Similarity=0.224  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---FANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~  205 (270)
                      +..++..|..++..|+|++|+..|++++...|..+.+   .+.+|.++++++++++|+..+++.+...|++   +.++|.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            3457788999999999999999999999999988654   5999999999999999999999999999976   468999


Q ss_pred             HHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q psy6284         206 RAAARRSLN---------------H---FEDARKDILKVLALEPNNK---QAEIELAEL  243 (270)
Q Consensus       206 ~g~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~---~a~~~l~~~  243 (270)
                      +|.++..++               |   ..+|+..|+..++.-|+..   .|...+..+
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence            999875554               1   3578899999999999875   444444444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=8.7e-09  Score=84.87  Aligned_cols=110  Identities=18%  Similarity=0.081  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN---HFEDARKD  222 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~  222 (270)
                      .+.+.-+...+.-|..+|+|+.-|..+|.+|+.++++..|...|.+++++.|+++..+..+|.++....   .-.++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            346677778888899999999999999999999999999999999999999999999999999987543   46789999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         223 ILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++++||+|..+...|+......|++.+++.
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence            999999999999999999999999999999987

>KOG4162|consensus

Probab=98.99  E-value=1.2e-08  Score=92.82  Aligned_cols=106  Identities=24%  Similarity=0.173  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhcCCCCHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA--DCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~a~~~~g  207 (270)
                      ..+..++..|..+..+|++.+|...|..|+.++|+++.+...+|.|++..|+..-|..  ....++++||.++++||.+|
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG  761 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG  761 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999998887777  99999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQ  235 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  235 (270)
                      .++..+|+.++|.++|+.|+++++.+|-
T Consensus       762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  762 EVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999999998864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.97  E-value=1.5e-08  Score=96.40  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..+...|+|++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++..
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~  181 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA  181 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence            3455568899999999999999999999999999999999999999999999999999999999986554 555666666


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .++..+|++.|+++++++|++..++..+..++..+|....+..
T Consensus       182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~  224 (822)
T PRK14574        182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR  224 (822)
T ss_pred             cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence            8888789999999999999999999999999999988766655

>KOG1156|consensus

Probab=98.97  E-value=5.7e-09  Score=93.16  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .++.+....|..++|...+...+..|+..|.+++.....|+.+..+|+-++|...++.++..|+.+...|..+|.++..-
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            46777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++|+++|+.|+.++|+|.+++.-++.+..+++++.--..
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            999999999999999999999999999999888888755443

>KOG3060|consensus

Probab=98.97  E-value=3.4e-08  Score=79.20  Aligned_cols=113  Identities=23%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      ++.+-.....+|+-.+||+....-++..+.|.++|..++.+|+..++|+.|.-|+++++-+.|.++-.+.++|.+++.+|
T Consensus       123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            44555566777888899999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         215 ---HFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       215 ---~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                         +++-|.++|.++++++|.+..++..+-.+-..+
T Consensus       203 g~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  203 GAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             hHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence               677899999999999998888888776664444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.97  E-value=1.6e-08  Score=79.00  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      ....+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|.+++.++|++..++..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456789999999999999999999999999887753   57999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q psy6284         241 AELNRKLNIP  250 (270)
Q Consensus       241 ~~~~~~~~~~  250 (270)
                      +.++..+|+.
T Consensus       113 g~~~~~~g~~  122 (172)
T PRK02603        113 AVIYHKRGEK  122 (172)
T ss_pred             HHHHHHcCCh
Confidence            9999988874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.96  E-value=3.8e-08  Score=78.96  Aligned_cols=113  Identities=21%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~  205 (270)
                      +..++..|..++..|+|.+|+..|++.+...|..   ..+.+.+|.++++.+++.+|+..+++.+...|+++   .++|.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4578899999999999999999999999998875   57999999999999999999999999999999764   58999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH
Q psy6284         206 RAAARRSLN-----------HFEDARKDILKVLALEPNNKQ---AEIELAELN  244 (270)
Q Consensus       206 ~g~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~---a~~~l~~~~  244 (270)
                      +|.+++.+.           ...+|+..|+..++.-|+++-   |...+..+.
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~  137 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR  137 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence            999977653           345899999999999999864   444444443

>KOG3060|consensus

Probab=98.96  E-value=3.4e-08  Score=79.22  Aligned_cols=117  Identities=21%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      .+-.|-.+-..|.|++|+++|+..|+-+|.+..++-..-.+...+|...+||....+-++.-+.+..||..++.+|...|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            34457777888999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                      +|++|.-+++.++-++|.++.....++.++.-+|...
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999888743

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=1.6e-08  Score=76.67  Aligned_cols=95  Identities=17%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ....+..|..++..|+|++|+..|++++...|+.   ..+.+++|.+++.+|++++|+..++. +.-.+..+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            3456778999999999999999999999987665   46899999999999999999999966 3445556778899999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al  227 (270)
                      ++...|++++|+..|+++|
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=1.7e-08  Score=87.84  Aligned_cols=121  Identities=13%  Similarity=0.058  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------------------------------------HHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-------------------------------------VFFANRALCFL  177 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-------------------------------------~~~~~~a~~~~  177 (270)
                      ..-+|..++..|++++|+..+.++++.+|.+.                                     .++..+|.++.
T Consensus        46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence            34456666777777777777777776666554                                     24456677778


Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCCCCc
Q psy6284         178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK----QAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~~~~~~~~a  253 (270)
                      .+|++++|+..+++++.++|++..++..+|.++...|++++|+..+++++...|.++    ..+..++.++...|++.++
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            888888888888888888888888888888888888888888888888888877543    2455788888888888887


Q ss_pred             ch
Q psy6284         254 IK  255 (270)
Q Consensus       254 ~~  255 (270)
                      +.
T Consensus       206 ~~  207 (355)
T cd05804         206 LA  207 (355)
T ss_pred             HH
Confidence            77

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.93  E-value=4.9e-08  Score=71.01  Aligned_cols=95  Identities=20%  Similarity=0.013  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRA  207 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g  207 (270)
                      ..++.|..+-..|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|+   +......++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            56888999999999999999999999975444   568999999999999999999999999999887   888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q psy6284         208 AARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~  228 (270)
                      .++..+|++++|+..+-.++.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999988775

>TIGR00540 hemY_coli hemY protein

Probab=98.92  E-value=5.5e-08  Score=86.44  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQRR  206 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~~  206 (270)
                      +...+......|...+..|+|+.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~  159 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence            3445667788999999999999999999999999998888889999999999999999999999999999875 466667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.++...|+++.|++.++..++.+|+++.+...++.++...|+..++..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~  208 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD  208 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999999999999999999999999876655

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=6.9e-08  Score=84.01  Aligned_cols=116  Identities=23%  Similarity=0.145  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+--.|..++..++..+|++.+++++.++|+.+.+..++|.++++.|++.+|+..+++.+..+|+++..|..+|.+|.
T Consensus       340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~  419 (484)
T COG4783         340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA  419 (484)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      .+|+..+|...+...+.+.-.-..|...+..+..+.
T Consensus       420 ~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         420 ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988888888888877665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.87  E-value=3.1e-08  Score=86.26  Aligned_cols=70  Identities=17%  Similarity=0.077  Sum_probs=67.3

Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA---YQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      ..+|+++.+++|+|.+|+.+|+|++|+.+|+++++++|++..+   ||++|.+|..+|++++|+++|++++++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999855   999999999999999999999999998

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=7.8e-08  Score=79.68  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ...-+.|-...+|++||+.-.+...+.++.     ...|+.+|..++...+++.|...+.+++..+|.+..|-..+|.+.
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~  224 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE  224 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence            344566667777888887777777776664     457889999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNN-KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...|+|+.|++.++.+++.||+. +.+...|..|+..+|++.+...
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999987 6899999999999999887655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.85  E-value=3.3e-08  Score=93.56  Aligned_cols=120  Identities=11%  Similarity=-0.022  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------------
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV------------  200 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------  200 (270)
                      ..+......+...+++++|+.....+++..|+...+|+.+|.+++..+++..+...  .++.+-+.+.            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            35666788888999999999999999999999999999999999998888776555  5555544444            


Q ss_pred             -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         201 -------KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       201 -------~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                             .|++.+|.||..+|+.++|.+.|+++++++|+|+.+.++++..+... +..+|..
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence                   89999999999999999999999999999999999999999999988 7766655

>TIGR00540 hemY_coli hemY protein

Probab=98.84  E-value=6.2e-08  Score=86.14  Aligned_cols=124  Identities=9%  Similarity=-0.060  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF--ANRALCFLKMKNYVSAEADCTASLKLDNTYV--KAYQRR  206 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~~  206 (270)
                      ........|..+...|++++|+..+.++++..|++....  ..+....+..++...++..++++++.+|+++  .....+
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL  341 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL  341 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            345566788999999999999999999999999987532  3344444556889999999999999999999  888899


Q ss_pred             HHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 AAARRSLNHFEDARKDIL--KVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |.+++..|++++|.++|+  .+++.+|++..+. .++.++.++|+..++..
T Consensus       342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAA  391 (409)
T ss_pred             HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHH
Confidence            999999999999999999  6888999887744 99999999999888765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.80  E-value=4.2e-09  Score=72.05  Aligned_cols=76  Identities=28%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         179 MKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++++.|+..+++++..+|.  +...++.+|.+++..|++++|+..+++ ++.+|.+......++.|+.++|++.+|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            68999999999999999995  567788899999999999999999999 99999999999999999999999988876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.80  E-value=2.4e-07  Score=82.04  Aligned_cols=127  Identities=13%  Similarity=0.030  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHHH-HH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANR-ALCFLKMKNYVSAEADCTASLKLDNTYVKAY-QR  205 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~-~~  205 (270)
                      +...+...+..|...+-.|+|++|.+...++-+.. +++..++.+ +.+...+|+++.|...+.++.+.+|++..+. ..
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~  158 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT  158 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            34456677788888888899999887777655433 335555555 4454888999999999999998888875443 44


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+..+...|++++|++.+++.++.+|+++.+...+..++...|+..++..
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            58888889999999999999999999999999999999888888777663

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.79  E-value=1.2e-07  Score=82.57  Aligned_cols=98  Identities=14%  Similarity=-0.017  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV----KAYQRRAAA  209 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~  209 (270)
                      .....|..+...|++++|+..+++++++.|+++.++..+|.++...|++++|+..+++++...|..+    ..++.+|.+
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            4556788999999999999999999999999999999999999999999999999999999887432    356689999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCC
Q psy6284         210 RRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      +..+|++++|+..|++++...|
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhcccc
Confidence            9999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0543|consensus

Probab=98.78  E-value=1.6e-07  Score=80.22  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+.+.+.++.+.++|..|+...+++|.++|.|+.++|.+|.+++.+++|+.|+.+|+++++++|.|..+...+..+...
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             cCCHHHH-HHHHHHHHhhCC
Q psy6284         213 LNHFEDA-RKDILKVLALEP  231 (270)
Q Consensus       213 ~g~~~~A-~~~~~~al~~~p  231 (270)
                      ..++.+. .+.|...+..-+
T Consensus       338 ~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            6666654 677777766543

>KOG1128|consensus

Probab=98.77  E-value=8.8e-08  Score=86.83  Aligned_cols=126  Identities=18%  Similarity=0.158  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------------------------HHHHHHHHHHcc
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF----------------------------FANRALCFLKMK  180 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~----------------------------~~~~a~~~~~~~  180 (270)
                      .++...|-....+|...|+-.+|.....+-++ .|.++..                            ...+|...+..+
T Consensus       421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~  499 (777)
T KOG1128|consen  421 FERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK  499 (777)
T ss_pred             HHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence            34444555666677777777777766666666 4444333                            333344445568


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +|+++..+++..++++|-....||.+|.+...++++..|.++|..++.++|++..+|+++..++.++++..++..
T Consensus       500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877755

>KOG1840|consensus

Probab=98.76  E-value=8.7e-08  Score=85.92  Aligned_cols=124  Identities=25%  Similarity=0.283  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-------  196 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------  196 (270)
                      +..+...|..|...++|.+|+..|++|+.+        +|.-..++.|+|.+|...|+|.+|..+|++|+.+.       
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~  320 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS  320 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence            445567899999999999999999999986        34446799999999999999999999999999763       


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHhCCCCCcch
Q psy6284         197 -NTYVKAYQRRAAARRSLNHFEDARKDILKVLALE-----PNN---KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       197 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                       |.-...+...+.++..++++++|...+++++++-     +++   ...+.+|+.++..+|++.+|..
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence             2345678889999999999999999999998863     233   5788999999999999998866

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=1e-08  Score=69.02  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLD----N---TYVKAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      ..++.++|.+|..+|++++|+..|++++.+.    +   ....+++++|.++..+|++++|++.|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556666666666666666666666666441    1   12456667777777777777777777777654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.74  E-value=1.6e-07  Score=68.38  Aligned_cols=89  Identities=17%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIEL  240 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l  240 (270)
                      .+.+++|.++-.+|+.++|+..|++++.....   -..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            57899999999999999999999999997543   3679999999999999999999999999999898   88999999


Q ss_pred             HHHHHHhCCCCCcch
Q psy6284         241 AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~  255 (270)
                      +.++..+|+..+++.
T Consensus        82 Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   82 ALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999999999887

>PRK15331 chaperone protein SicA; Provisional

Probab=98.73  E-value=5e-08  Score=73.90  Aligned_cols=98  Identities=11%  Similarity=-0.099  Sum_probs=91.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284         158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       158 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  237 (270)
                      ...+.++.....+..|.-++..|++++|...|+-+..++|.++..++.+|.++..+++|++|+..|..|..++++|+...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34556667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcch
Q psy6284         238 IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       238 ~~l~~~~~~~~~~~~a~~  255 (270)
                      ...+.|+..+|+..+|..
T Consensus       109 f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             chHHHHHHHhCCHHHHHH
Confidence            999999999999988876

>KOG2002|consensus

Probab=98.73  E-value=1.9e-07  Score=87.09  Aligned_cols=117  Identities=19%  Similarity=0.096  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-VKAYQRRA  207 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~~g  207 (270)
                      ...+...++-+|-.|+|..+...+..++...-..   ...+|.+|-+|..+|+|++|..+|.+++..+|++ .-+++.+|
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg  349 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG  349 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence            4456678999999999999999999998865443   4569999999999999999999999999999988 88999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      +.+...|+++.|..+|+++++.+|++......||.++...+
T Consensus       350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            99999999999999999999999999999999999998775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.71  E-value=3.3e-07  Score=80.07  Aligned_cols=110  Identities=21%  Similarity=0.104  Sum_probs=93.7

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                      -..++++.|+..+++..+.+|+   +...+|.+++..++..+|+..+.+++...|.+...+..-|..+...++++.|+..
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3456788999999888777764   5566788888888888999999999998898888888888889999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         223 ILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .++++.+.|++...|..|+.++..+|++.+|+.
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999999999888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.70  E-value=3e-07  Score=80.35  Aligned_cols=98  Identities=19%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      ..+-.+|++.-.+|++++|.|+.++..+|.++...++++.|+..|++++.++|+++.+|+..|.+....|+.++|++.++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHH
Q psy6284         225 KVLALEPNNKQAEIELAE  242 (270)
Q Consensus       225 ~al~~~p~~~~a~~~l~~  242 (270)
                      +|++++|.-..+-.....
T Consensus       397 ~alrLsP~~~~~~~~~~~  414 (458)
T PRK11906        397 KSLQLEPRRRKAVVIKEC  414 (458)
T ss_pred             HHhccCchhhHHHHHHHH
Confidence            999999987665544333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.69  E-value=2.6e-07  Score=76.79  Aligned_cols=90  Identities=12%  Similarity=-0.044  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy6284         166 AVFFANRALCF-LKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEI  238 (270)
Q Consensus       166 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~  238 (270)
                      ....|..|..+ +..++|++|+..|++.+...|++   +.++|.+|.+|+..|++++|+..|+++++..|++   +.++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46788888886 66799999999999999999987   5899999999999999999999999999998874   78888


Q ss_pred             HHHHHHHHhCCCCCcch
Q psy6284         239 ELAELNRKLNIPLSPIK  255 (270)
Q Consensus       239 ~l~~~~~~~~~~~~a~~  255 (270)
                      .++.++..+|+..++..
T Consensus       222 klg~~~~~~g~~~~A~~  238 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKA  238 (263)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            89999999999888877

>KOG1174|consensus

Probab=98.69  E-value=1.4e-07  Score=80.57  Aligned_cols=124  Identities=11%  Similarity=0.023  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----------------------------------HHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV----------------------------------FFANRALCFL  177 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~----------------------------------~~~~~a~~~~  177 (270)
                      ...+.+.|.++|..|++.+|+..|.++..++|++..                                  -|+--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            345667899999999999999999999999998643                                  2334444455


Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++..|+..-+++|..+|.+..++...|.++..+|+.++|+-.|+.|..+.|.....+..|-.++...|...+++.
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence            678889999999999999999999999999999999999999999999999999999999999999988888887765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.67  E-value=3.6e-06  Score=64.81  Aligned_cols=121  Identities=18%  Similarity=0.230  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~  208 (270)
                      ..-....|+.+...|++.+|...|.+++. +..+++..+..++.+.+..+++..|...++++.+.+|.  .+...+.+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            34566789999999999999999999987 56788999999999999999999999999999999985  5678888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      ++..+|.+++|...|+.++..-|+ +++....+..+.++|...++
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence            999999999999999999999876 45556667777788866554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.65  E-value=7.9e-07  Score=78.78  Aligned_cols=120  Identities=12%  Similarity=0.034  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      .......+..+...|+.++|.....++++ .|.++.+....+.+  ..+++++++..+++.++..|+++..++.+|.++.
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~  339 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM  339 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            33455678999999999999999999999 45566554444444  4599999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++++|.+.|+++++.+|++.. +..++.++.++|+..++..
T Consensus       340 ~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        340 KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999766 4579999999999888766

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.65  E-value=1e-07  Score=64.07  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---P----HDAVFFANRALCFLKMKNYVSAEADCTASLKL  195 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~---p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  195 (270)
                      .+..+...|..++..|+|++|+.+|++++++.   +    ....++.++|.|+..+|++++|+..+++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45578899999999999999999999999762   2    22568999999999999999999999999975

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=5.5e-07  Score=74.77  Aligned_cols=136  Identities=14%  Similarity=0.108  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-----VKAYQR  205 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~  205 (270)
                      ....+.+.|..|+..|-++.|...|....+...--..+.-.+..+|....++++|++..++..++.+..     ...|..
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence            345678899999999999999999988876554556788889999999999999999999999998854     346777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccc
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLT  266 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~  266 (270)
                      +|+.+....+++.|+..+.++++.||....|-..++.+....|++..++.   +..-+||..++
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            89999999999999999999999999999999999999999999999888   77777776543

>KOG4648|consensus

Probab=98.64  E-value=3.5e-08  Score=82.43  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .-..|.-|+++|.|++||.||.+++.++|.|+..+-++|.+|+++..|..|..+++.|+.+|.....||...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcch---HhhhcCCC
Q psy6284         249 IPLSPIK---VDFLHNPY  263 (270)
Q Consensus       249 ~~~~a~~---~~~~~~~~  263 (270)
                      +..++-.   ..+..+|.
T Consensus       180 ~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPK  197 (536)
T ss_pred             hHHHHHHhHHHHHhhCcc
Confidence            9887755   56666664

>KOG2003|consensus

Probab=98.64  E-value=6.9e-07  Score=77.33  Aligned_cols=125  Identities=16%  Similarity=0.026  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .++.+.+.++.|-...+..+||+.|.++.++-|+++.++.-+|.+|-+-|+-.+|.+++-.....-|.+....-.+|.-|
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            45666777777777777788888888888888888888888888888888888888888777778888888777788777


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ....-+++|+.+|+++--+.|+.......++.|.++.|++..++.
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d  681 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD  681 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence            777778999999999999999999999999999999999998876

>KOG2076|consensus

Probab=98.64  E-value=6.8e-07  Score=82.83  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...++..|..|-++|+.++|+.....|--++|.+...|..++....++|.+.+|.-+|.+||..+|.+.+..++++..|.
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCC
Q psy6284         212 SLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p  231 (270)
                      ++|+...|+..|.+.+.++|
T Consensus       253 ~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  253 KTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999

>KOG0495|consensus

Probab=98.61  E-value=8.6e-07  Score=79.80  Aligned_cols=130  Identities=18%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------------------------HHHHHHHHHHHccC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---------------------------------FFANRALCFLKMKN  181 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---------------------------------~~~~~a~~~~~~~~  181 (270)
                      |..-+...+..|+...|...+..+++.+|++.+                                 +|+--+.....++.
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            455566777888888888888888888887633                                 45556666667899


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---Hhh
Q psy6284         182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDF  258 (270)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~  258 (270)
                      .++|+..|+++++..|++.+.|..+|+++..+++.+.|.+.|...++.-|+....|..|+.+..+.|+...|=.   +..
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988766533   667


Q ss_pred             hcCCCc
Q psy6284         259 LHNPYH  264 (270)
Q Consensus       259 ~~~~~~  264 (270)
                      +.||-+
T Consensus       747 lkNPk~  752 (913)
T KOG0495|consen  747 LKNPKN  752 (913)
T ss_pred             hcCCCc
Confidence            777743

>KOG1127|consensus

Probab=98.61  E-value=1e-07  Score=88.99  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------------------------
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK------------------------  201 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------  201 (270)
                      ++...|+..|-+++.+++....+|..+|..|....+...|..+|++|+++|+....                        
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            34555666666666666666666666666655555555555555555555553321                        


Q ss_pred             ------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 ------------AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 ------------a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                  .|..+|..|...+++-+|+..|+.+++.+|.|-..|..++.++-..|.+..+++
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK  617 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK  617 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence                        244466666666666666666666666666666666666666666666666555

>KOG1840|consensus

Probab=98.60  E-value=8.7e-07  Score=79.62  Aligned_cols=126  Identities=21%  Similarity=0.174  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP--------HDAVFFANRALCFLKMKNYVSAEADCTASLKLD-----  196 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----  196 (270)
                      ..+..+.+.|..|.+.|+|++|..++++|+++..        .-...+.+++.++..++++++|+..+++++++-     
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            3467788999999999999999999999998732        235689999999999999999999999999763     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         197 ---NTYVKAYQRRAAARRSLNHFEDARKDILKVLALE--------PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       197 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                         +.-.+.+.++|.+|+.+|++.+|.+.|++|+.+.        +........++..+.+++++.++..
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence               2336789999999999999999999999999875        3345677888888888888877655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.59  E-value=1e-06  Score=76.98  Aligned_cols=103  Identities=19%  Similarity=0.143  Sum_probs=91.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      .-.+..+...++-.+|+..+.+++...|.+..++...|..++..++++.|+..+++++.+.|+...+|+.+|.+|..+|+
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            34577777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHH
Q psy6284         216 FEDARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       216 ~~~A~~~~~~al~~~p~~~~a~~  238 (270)
                      ++.|+..++.+-..-+.+.....
T Consensus       284 ~e~ALlaLNs~Pm~~~~~k~~~~  306 (395)
T PF09295_consen  284 FENALLALNSCPMLTYKDKYKLK  306 (395)
T ss_pred             HHHHHHHHhcCcCCCCccchhhh
Confidence            99999999877655445444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156|consensus

Probab=98.59  E-value=3.8e-07  Score=81.76  Aligned_cols=123  Identities=17%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      +.+-.+|..+...|+-++|..+-..++..++....+|.-+|+++..-++|++|+.+|+.|+.++|+|...+.-++.....
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34555688888889999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++++.....-.+.+++.|.+..-|...+.....+|++..+..
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888888887766

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.58  E-value=1.1e-06  Score=79.83  Aligned_cols=88  Identities=9%  Similarity=-0.019  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       147 ~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      +...+.....+++.+  +|.++.+|.-+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|+
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345666667776664  777888999999999999999999999999999999 57899999999999999999999999


Q ss_pred             HHHhhCCCCHH
Q psy6284         225 KVLALEPNNKQ  235 (270)
Q Consensus       225 ~al~~~p~~~~  235 (270)
                      +|+.++|.++.
T Consensus       478 ~A~~L~P~~pt  488 (517)
T PRK10153        478 TAFNLRPGENT  488 (517)
T ss_pred             HHHhcCCCCch
Confidence            99999999985

>KOG1129|consensus

Probab=98.57  E-value=4.1e-07  Score=75.69  Aligned_cols=108  Identities=15%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  216 (270)
                      -...+|-+..+...|+..|.+.++..|.++..+...|.++..++++++|++.|..+++++|.|.++.-..|.-|+--++.
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P  340 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP  340 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh
Confidence            34444444445555555555555555666666666666666666666666666666666666665555555555555555


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      +.|+.+|.+.|++.-.+++.+.+++.|-
T Consensus       341 E~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  341 EMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             HHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            5555555555555555555555555553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.51  E-value=1.9e-06  Score=72.82  Aligned_cols=119  Identities=17%  Similarity=0.071  Sum_probs=96.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      -.-..+.+.++++.|.+.++..-+.+.+........|.+.+..|  .+.+|...|++.....+.++..+..+|.++..+|
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            34667889999999999999988887776665555666666666  5999999999988887889999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +|++|.+.+++++..+|+++.+..++..+...+|+..+...
T Consensus       216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence            99999999999999999999999999999999999855444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.51  E-value=3.8e-06  Score=76.14  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCF  176 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~  176 (270)
                      ...+-.+|..+++.|++++|...|...|+.+|++...|..+..|.
T Consensus        38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            345566799999999999999999999999998876666666555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.51  E-value=3e-07  Score=54.51  Aligned_cols=42  Identities=31%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467777777777777777777777777777777777777664

>KOG1174|consensus

Probab=98.50  E-value=1.3e-06  Score=74.88  Aligned_cols=111  Identities=13%  Similarity=0.081  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..|+-.|..+|..++|+.|+.+-.++|..+|.+..++...|.+++.+++.++|+-.|+.|..+.|.....|-.+-.+|
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      ...|.+.+|...-+.+++.-|.+..+...++
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            8888877777666666666666666666554

>KOG1310|consensus

Probab=98.50  E-value=5e-07  Score=79.40  Aligned_cols=112  Identities=25%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---KNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       126 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      .+-.+.++.++..|+..|-.+.+..|+..|.+++...|+...++.|+|.++++.   ++.-.|+.+|..++.++|...+|
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            344567788999999999999999999999999999999999999999999885   57778999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  237 (270)
                      ||+++.++..++++.+|+++...+....|.+....
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~  482 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ  482 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence            99999999999999999999988888888665443

>KOG0495|consensus

Probab=98.45  E-value=3.3e-06  Score=76.18  Aligned_cols=124  Identities=12%  Similarity=-0.004  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...|...++...-.++.++|+..++++|+..|+...+|..+|.++-.+++.+.|...|..-++..|+.+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            34455566677778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|+.-.|...+.++..-||.+...|.....+..+.|+..++..
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999866643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.44  E-value=4.7e-06  Score=79.31  Aligned_cols=115  Identities=10%  Similarity=0.113  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------------
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL---------------  195 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------  195 (270)
                      +-..++.+|.+|-+.|++++|...|+++|+++|+++.+..|+|..|... ++++|+..+.+|+..               
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~  193 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS  193 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999 999999888888754               


Q ss_pred             -----CCCCHHHHH--------HHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         196 -----DNTYVKAYQ--------RRA------------AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       196 -----~p~~~~a~~--------~~g------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                           +|++...++        .++            ..|...++|++++..++.+|+++|.|..+...+..|+..
T Consensus       194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence                 444333211        234            677888999999999999999999999999999999873

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.44  E-value=1.9e-05  Score=63.28  Aligned_cols=119  Identities=20%  Similarity=0.128  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCC
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKN-----------YVSAEADCTASLKLDNT  198 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~  198 (270)
                      ...+..|..+++.|+|.+|+..|++.++..|.++   .+++.+|.+++.+..           ..+|+..|+..+...|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            3567789999999999999999999999999874   589999999877642           45899999999999997


Q ss_pred             CHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCC
Q psy6284         199 YVKA-----------------YQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAELNRKLNIPL  251 (270)
Q Consensus       199 ~~~a-----------------~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~~~  251 (270)
                      +..+                 -+..|..|.+.|.+..|+..|+.+++--|+.+   .+...+..++.++|...
T Consensus       123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            7432                 34478889999999999999999999999876   56777777888888765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.44  E-value=1.7e-05  Score=65.41  Aligned_cols=122  Identities=13%  Similarity=0.033  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKN------------------YVSAEADCTAS  192 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~------------------~~~A~~~~~~a  192 (270)
                      ..+..|..+++.++|++|+..|++.++..|++   +.+++.+|.++..++.                  ..+|+..|++.
T Consensus        71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l  150 (243)
T PRK10866         71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL  150 (243)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999987   4589999999766541                  35788999999


Q ss_pred             HhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCC
Q psy6284         193 LKLDNTYVK---A--------------YQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAELNRKLNIPLS  252 (270)
Q Consensus       193 l~~~p~~~~---a--------------~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~  252 (270)
                      +...|++.-   |              -+..|.-|.+.|.+..|+.-|+.+++--|+.   .++...+..++..+|...+
T Consensus       151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~  230 (243)
T PRK10866        151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ  230 (243)
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence            999997642   1              2346777999999999999999999998875   5788888888999998877


Q ss_pred             cch
Q psy6284         253 PIK  255 (270)
Q Consensus       253 a~~  255 (270)
                      +-.
T Consensus       231 a~~  233 (243)
T PRK10866        231 ADK  233 (243)
T ss_pred             HHH
Confidence            654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=4.4e-07  Score=50.49  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      .+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.42  E-value=2.7e-07  Score=51.32  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=18.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284         189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDAR  220 (270)
Q Consensus       189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  220 (270)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555555555555555555555555555554

>KOG1127|consensus

Probab=98.42  E-value=8.9e-07  Score=82.93  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..|..+|..+.+.+++..|+..|+.++..+|.+..+|..+|.+|...|++..|+..|+++..++|.+.-+.|..+...+.
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            34556788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      +|+|.+|+..+...+..-.....+...++.++.+
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            8888888888888887766666666666666544

>KOG4555|consensus

Probab=98.39  E-value=4.9e-06  Score=60.34  Aligned_cols=83  Identities=25%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN----KQAEIELAELNRK  246 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~  246 (270)
                      ..|.+...-|+.+.|++.|.+++.+.|..+.+|.++++++.-+|+.++|+.++++++++.-+.    -.++...+.++..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            457777889999999999999999999999999999999999999999999999999996543    2677788889999


Q ss_pred             hCCCCCc
Q psy6284         247 LNIPLSP  253 (270)
Q Consensus       247 ~~~~~~a  253 (270)
                      +|+...+
T Consensus       128 ~g~dd~A  134 (175)
T KOG4555|consen  128 LGNDDAA  134 (175)
T ss_pred             hCchHHH
Confidence            9886544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.37  E-value=4.2e-07  Score=50.54  Aligned_cols=34  Identities=32%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q psy6284         154 KYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA  187 (270)
Q Consensus       154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~  187 (270)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999863

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.37  E-value=3.6e-05  Score=62.49  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~  205 (270)
                      +..+++.|...++.|+|++|++.|+......|..   ..+.+.++.++++.+++++|+...++-+.+.|.++.   ++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3456666777777777777777777766665544   356666777777777777777777777766665432   3444


Q ss_pred             HHHHH
Q psy6284         206 RAAAR  210 (270)
Q Consensus       206 ~g~~~  210 (270)
                      +|.++
T Consensus       114 kgLs~  118 (254)
T COG4105         114 KGLSY  118 (254)
T ss_pred             HHHHH
Confidence            44443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=1.4e-06  Score=48.31  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      +.+++.+|.++..+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567778888888888888888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.33  E-value=1.6e-06  Score=51.40  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467777888888888888888888888888888888777764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=8.1e-06  Score=69.00  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=85.8

Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         138 QGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       138 ~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      .+...+..|  .+.+|...|++..+..+.++..++.+|.|++.+|+|++|...+.+++..+|.++.++.+++.+...+|+
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            344444444  699999999998888888999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         216 F-EDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       216 ~-~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      . +.+.+.+.+.-..+|+++-.....
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             ChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            8 667788888888999998766544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642|consensus

Probab=98.29  E-value=1.3e-06  Score=69.71  Aligned_cols=85  Identities=22%  Similarity=0.212  Sum_probs=80.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      .-|.+++.-..|..|+.+|.++|.++|..+..|.+++.+++++.+++.+..+..++++++|+...+.+.++.+......+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcch
Q psy6284         251 LSPIK  255 (270)
Q Consensus       251 ~~a~~  255 (270)
                      .+++.
T Consensus        95 ~eaI~   99 (284)
T KOG4642|consen   95 DEAIK   99 (284)
T ss_pred             cHHHH
Confidence            99887

>KOG4234|consensus

Probab=98.28  E-value=7.7e-06  Score=63.74  Aligned_cols=73  Identities=27%  Similarity=0.348  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      +...+.++|.++.+.+.++.||....++|+++|.+..++..+|.+|-++..|++|+.+|.+++.++|....+.
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear  205 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR  205 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence            3456778999999999999999999999999999999999999999999999999999999999999876543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=1.6e-06  Score=48.21  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT  198 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  198 (270)
                      .+|+++|.++..++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0546|consensus

Probab=98.24  E-value=1.4e-06  Score=73.16  Aligned_cols=124  Identities=27%  Similarity=0.293  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-----------H--------DAVFFANRALCFLKMKNYVSAEADC  189 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~  189 (270)
                      ...+...++.|+..|+.++|..|...|.+++....           +        -...+.|++.|-++++.+..|+..+
T Consensus       219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~  298 (372)
T KOG0546|consen  219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT  298 (372)
T ss_pred             hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence            34455677889999999999999999999987522           1        1246888999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCC
Q psy6284         190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLS  252 (270)
Q Consensus       190 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~  252 (270)
                      ..++..++...+++|++++++..+.++++|++++..+...+|++..+...+..+..+...+..
T Consensus       299 ~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  299 NEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             ccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888776655443

>KOG2376|consensus

Probab=98.24  E-value=1.1e-05  Score=71.89  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .++..-+.+-+.|+|++|+....+.+...|++..+....-.|+.+++.|++|+...++-....-.+. ..|..|.|.+++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence            4555667778888999999999999998888888888888888888888888854443332222222 226788888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch--Hhh
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK--VDF  258 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~--~~~  258 (270)
                      +..++|+.+++   -+++.+..+....+.+..+++++.+++.  +++
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L  136 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL  136 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888888887   5667777778888888888888888776  555

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.23  E-value=1.3e-05  Score=65.59  Aligned_cols=87  Identities=22%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAE  242 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~  242 (270)
                      .|+.|.-+++.|+|..|...|..-+...|++   +.|+|.+|.+++.+|++++|...|..+++-.|.+   +++...|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            8999999999999999999999999999975   6799999999999999999999999999998876   578999999


Q ss_pred             HHHHhCCCCCcch
Q psy6284         243 LNRKLNIPLSPIK  255 (270)
Q Consensus       243 ~~~~~~~~~~a~~  255 (270)
                      ++..+|+..+|..
T Consensus       224 ~~~~l~~~d~A~a  236 (262)
T COG1729         224 SLGRLGNTDEACA  236 (262)
T ss_pred             HHHHhcCHHHHHH
Confidence            9999999988876

>KOG1130|consensus

Probab=98.21  E-value=9.8e-07  Score=75.57  Aligned_cols=129  Identities=17%  Similarity=0.137  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLD----  196 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----  196 (270)
                      ++......+-+.||.||-.|+|++||..-+.-|.+....      -.++.|+|.||.-+|+++.|++.|.+.+.+.    
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg  269 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG  269 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence            344556667789999999999999999988877765443      3589999999999999999999999877543    


Q ss_pred             C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         197 N--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       197 p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .  --....|.+|.+|.-+.++++|+.++++-|.+..+      ...+...|+.++..+|+..+++.
T Consensus       270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            2  24567899999999999999999999998877543      45677778888888888777765

>KOG3785|consensus

Probab=98.20  E-value=3.6e-05  Score=65.05  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------------cCC-------
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--------------LDN-------  197 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p-------  197 (270)
                      |.++|..|+|++|+..|+-+...+.-+..++.|+|.|++-+|.|.+|.....++-+              ++.       
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f  143 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF  143 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence            88999999999999999999887666778888899888888888777655444321              111       


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         198 -----TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       198 -----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                           +...-.+.+|.+.+..-.|.+|++.|.++|.-+|+.....-.++.|+.++.=+.
T Consensus       144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd  202 (557)
T KOG3785|consen  144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD  202 (557)
T ss_pred             HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence                 111223345555555556677777777777767666666666666666665443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.20  E-value=0.00012  Score=55.32  Aligned_cols=95  Identities=20%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------------AVFFANRALCFLKMKNYVSAEADCTA  191 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~  191 (270)
                      .+...|......++...++..+.+++.+...+                      ..+...++..+...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34555777788899999999999999875322                      23677778888899999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       192 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      ++..+|.+..+|..+-.++...|+..+|++.|+++.+
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.20  E-value=3.6e-05  Score=69.94  Aligned_cols=123  Identities=15%  Similarity=0.036  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..++-.+..+-..|++++|+.+.++||+..|..++.|+..|.++-+.|++.+|..+++.+-.+|+.+.-.-...+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            34566788888899999999999999999999999999999999999999999999999999999888888888888999


Q ss_pred             cCCHHHHHHHHHHHHhhC--CCC-----HHHHHH--HHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALE--PNN-----KQAEIE--LAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~--p~~-----~~a~~~--l~~~~~~~~~~~~a~~  255 (270)
                      .|+.++|.+.+..-.+-+  |..     .+.|+.  .+.++.+.|++-.|++
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999988776654  211     234544  4556677777766665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=3.8e-06  Score=66.27  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      ...++.+|..|-.+|-..-|.-+|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+....
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HhCCCCCcch---HhhhcCCCc
Q psy6284         246 KLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       246 ~~~~~~~a~~---~~~~~~~~~  264 (270)
                      --|.+.-|-.   ..+-.+|..
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCC
Confidence            7777765544   444555543

>KOG2376|consensus

Probab=98.13  E-value=8.6e-05  Score=66.48  Aligned_cols=125  Identities=15%  Similarity=0.076  Sum_probs=96.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------------------
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN------------------  197 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------------  197 (270)
                      ++++.++|+.+..++|+..++   ..++.+..+...+|..++++++|++|+..|+..++.+.                  
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            688999999999999999998   45667777888899999999999999999998865422                  


Q ss_pred             -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC-------HHHHHHHHHHHHHhCC
Q psy6284         198 -------------TYVKAYQRRAAARRSLNHFEDARKDILKVLALE--------PNN-------KQAEIELAELNRKLNI  249 (270)
Q Consensus       198 -------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~a~~~l~~~~~~~~~  249 (270)
                                   +....+|+.|+++...|+|.+|++.+++++++.        -++       ..+...++-++..+|+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                         244578999999999999999999999994332        111       2355667777888899


Q ss_pred             CCCcch---HhhhcCCC
Q psy6284         250 PLSPIK---VDFLHNPY  263 (270)
Q Consensus       250 ~~~a~~---~~~~~~~~  263 (270)
                      ..++..   ..+..+|.
T Consensus       240 t~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRNPA  256 (652)
T ss_pred             hHHHHHHHHHHHHhcCC
Confidence            888866   34444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.12  E-value=0.00025  Score=50.59  Aligned_cols=100  Identities=20%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh---
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------------DAVFFANRALCFLKMKNYVSAEADCTASLK---  194 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---  194 (270)
                      ..+......|...+..|-|++|...|.++++....            +..++..++-++..+|+|++++...+++|.   
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            34445567788889999999999999999986322            245788899999999999999998888884   


Q ss_pred             ----cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         195 ----LDNT----YVKAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       195 ----~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                          ++.+    +..+.+++|.++..+|+.++|+..|+.+-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                4444    3567899999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.12  E-value=2.2e-05  Score=66.35  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----
Q psy6284         131 SAVYSKEQGNKLVKE-GKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT-----  198 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----  198 (270)
                      .+..+.+.|..+... |++++|+.+|.+|+++...+      ..++...|.++..+++|++|+..|+++....-.     
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence            356677888888888 99999999999999974322      357889999999999999999999999875321     


Q ss_pred             -CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         199 -YV-KAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       199 -~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                       +. ..++..+.|++..||+-.|...|++....+|..
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence             22 346778889999999999999999999999954

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.10  E-value=7.4e-05  Score=55.54  Aligned_cols=85  Identities=16%  Similarity=-0.026  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEI  238 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~  238 (270)
                      .+..++..|...+..|+|++|+..++.+....|.   ...+.+.+|.+|+..+++++|+..+++-++++|+++   -+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3567899999999999999999999999998874   467999999999999999999999999999999886   5777


Q ss_pred             HHHHHHHHhCC
Q psy6284         239 ELAELNRKLNI  249 (270)
Q Consensus       239 ~l~~~~~~~~~  249 (270)
                      ..+.+...+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            77877776543

>KOG4340|consensus

Probab=98.10  E-value=2.9e-05  Score=64.22  Aligned_cols=122  Identities=15%  Similarity=-0.004  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----------Hh---------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS----------LK---------  194 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~---------  194 (270)
                      .+.-.|.+|+...+|..|..+|.+.-...|......+.-|..+++.+.+..|+......          ++         
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse  125 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE  125 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence            45567888888889999999998888888888777777777777777776665433221          11         


Q ss_pred             -----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         195 -----------LDN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       195 -----------~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                 .-|  +......+.|+++++.|+++.|++-|+.+++..--++-..++++.++..-|++.++++
T Consensus       126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk  199 (459)
T KOG4340|consen  126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK  199 (459)
T ss_pred             ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence                       123  3456777889999999999999999999999999999999999999999999988877

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.00026  Score=58.59  Aligned_cols=119  Identities=21%  Similarity=0.188  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT-----------------------  190 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~-----------------------  190 (270)
                      .-...+......|++.+|...|..++...|.+..+...++.||+..|+.+.|...+.                       
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            345668888999999999999999999999999999999999999999977643332                       


Q ss_pred             -----------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCCCC
Q psy6284         191 -----------ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNKQAEIELAELNRKLNIPLS  252 (270)
Q Consensus       191 -----------~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~~~~~  252 (270)
                                 +.+..+|++..+-+.+|..+...|+.++|.+.+-..++.|-  ++..++..+-.+....|....
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence                       23344788888999999999999999999998888888765  456788888888877775443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=9.8e-06  Score=44.81  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  199 (270)
                      .+++.+|.+++.+|++++|+.+|++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345556666666666666666666666666543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.06  E-value=3.3e-05  Score=65.21  Aligned_cols=125  Identities=20%  Similarity=0.128  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCC--C--
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--D----AVFFANRALCFLKM-KNYVSAEADCTASLKLDN--T--  198 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~--  198 (270)
                      ..+..+.+.+.. ++..++.+|+.+|++|+++.-.  +    ..++.++|.+|... +++++|+..|.+|+.+..  +  
T Consensus        73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            344445555555 5556999999999999987322  2    45899999999998 999999999999997632  1  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHH---HHHHHHHHHHhCCCCCcch
Q psy6284         199 --YVKAYQRRAAARRSLNHFEDARKDILKVLALEPN----NKQA---EIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 --~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a---~~~l~~~~~~~~~~~~a~~  255 (270)
                        ....+...|.++..+|+|++|++.|+++....-+    ...+   +.....|+...|+...+-.
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~  217 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK  217 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence              2456778899999999999999999999875322    2223   2334455555666655443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.03  E-value=3.9e-05  Score=47.01  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      ..+|.+|.+++++|+|++|+..++.+|+++|+|.++......+..++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999998888776543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.00  E-value=0.00061  Score=58.44  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN-TYVKAYQR  205 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~  205 (270)
                      .+...+......|-.-+..|+|.+|.+...++-+-.+.-..+|..-+.+--.+|+++.|-.+..++-+..+ +...+...
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt  158 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT  158 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence            45566777888899999999999999999998877777777888888888999999999999999999944 45668888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++..+...|+++.|.....++++..|.++.+......++..+|+..+-..
T Consensus       159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999998755443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.99  E-value=0.0003  Score=55.43  Aligned_cols=120  Identities=26%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRAL-CFLKMKNYVSAEADCTASLKLDN---TYVKAYQRRAAA  209 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~  209 (270)
                      .+...|......+++..|+..+.+++...+.+.......+. ++...++++.|+..+.+++..+|   .....++..+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL  176 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence            34445555555556666666666666655555444444444 56666666666666666655554   344445555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPN-NKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +...++++.|+..+.+++...|. ...+...++.++...+...++
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            55566666666666666666666 455555555555555543333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.95  E-value=1.8e-05  Score=43.74  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      .+|+.+|.++..+|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467778888888888888888888888887743

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.88  E-value=6.5e-05  Score=57.79  Aligned_cols=69  Identities=19%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH----------FEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      |+.|.+.++.....+|.+..++++.|.++..+.+          +++|+.-|+.||.++|+...|+..++.++..++..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999999988754          57789999999999999999999999999887653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1130|consensus

Probab=97.87  E-value=3.5e-05  Score=66.31  Aligned_cols=118  Identities=16%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK  201 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~  201 (270)
                      +..+-..|..+++.|++...+..|+.|+..--.+    ..+|.-+|.+|+.+++|++|+++-..-|.+      .-.-.+
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK   96 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK   96 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence            4556677999999999999999999999987665    458999999999999999999876554433      235577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNI  249 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~  249 (270)
                      +.-++|..+.-+|.|++|+.++.+-|.+..+      ...|+++|+.++..-|+
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk  150 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK  150 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence            8889999999999999999999988876542      45788889998876665

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.83  E-value=0.00068  Score=53.37  Aligned_cols=113  Identities=25%  Similarity=0.225  Sum_probs=96.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYP---HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-YVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~  216 (270)
                      .++..|+++.|+..|.+++...|   .....+..++..+...++++.|+..+.+++...+. ...++..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            78999999999999999988777   45667777777788899999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +.|+..+..++...|........++..+...+...++
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA  255 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence            9999999999999999777777777776644433333

>KOG2796|consensus

Probab=97.81  E-value=0.00036  Score=56.89  Aligned_cols=121  Identities=17%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCC--CCHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLK----LDN--TYVKAYQRRA  207 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p--~~~~a~~~~g  207 (270)
                      .+...+.+.-.|+|.-.+..|.+.++.+ |.++.+...+|.+.++.||.+.|...|+++-+    ++.  .+.-.+-+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3445677777889999999999999987 66788888888888888988888888885443    222  3445677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .++...+++.+|...|.+++..||.++.+-++.+.|+.-+|+...|++
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence            788888888888888888888888888888888888888888877777

>KOG0551|consensus

Probab=97.80  E-value=9.7e-05  Score=61.89  Aligned_cols=88  Identities=25%  Similarity=0.248  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      .-|-.-|+-|++-++|..|+..|.+.|+....    +...|.++|-|.+.+|+|..|+.++.++++++|.+..++..=+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            45666789999999999999999999987543    46689999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcc
Q psy6284         243 LNRKLNIPLSPI  254 (270)
Q Consensus       243 ~~~~~~~~~~a~  254 (270)
                      |+..+..+..+.
T Consensus       162 c~~eLe~~~~a~  173 (390)
T KOG0551|consen  162 CLLELERFAEAV  173 (390)
T ss_pred             HHHHHHHHHHHH
Confidence            999888755543

>PRK10941 hypothetical protein; Provisional

Probab=97.80  E-value=0.00035  Score=58.20  Aligned_cols=78  Identities=15%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      ...|+=.+|...++++.|+.+.+.++.++|+++.-+.-+|.+|.++|++..|+.+++..++..|+++.+......+..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            566777888889999999999999999999999888889999999999999999999999999999888776666543

>KOG4507|consensus

Probab=97.79  E-value=0.00018  Score=64.61  Aligned_cols=109  Identities=17%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  216 (270)
                      .|....-.|+...|+.++..|+...|... ....++|.+.++-+-...|-..+.+++.+....+-.++..|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            34444567999999999999999988754 46889999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      +.|++.|.+|++++|+++.....|..+.++
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~  722 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKLIRCM  722 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            999999999999999999999999888774

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.75  E-value=0.0012  Score=65.28  Aligned_cols=114  Identities=7%  Similarity=-0.089  Sum_probs=51.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~  215 (270)
                      ...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|.+....  .| +...|..+..++...|+
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC
Confidence            344555555555555555554443 223344444444555555555555555444433  22 23344444444444444


Q ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         216 FEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       216 ~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +++|.+.|....+.. +-+...+..+..++.+.|+..++
T Consensus       665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA  703 (1060)
T PLN03218        665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA  703 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            444444444444332 12333444444444444444433

>KOG3824|consensus

Probab=97.74  E-value=0.00018  Score=59.88  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...|......+....+.|+.++|...|..|+.+.|.++.++...|......++.-+|-++|-+|+.++|.+.+|+.+++.
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            33444555667788999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HH
Q psy6284         209 AR  210 (270)
Q Consensus       209 ~~  210 (270)
                      ..
T Consensus       193 T~  194 (472)
T KOG3824|consen  193 TT  194 (472)
T ss_pred             cc
Confidence            53

>KOG2053|consensus

Probab=97.70  E-value=0.00057  Score=64.04  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=95.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      -......++|.+|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++...+-.+-.+|..++++++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            44556778899999999999999999999999999999999999999977777777778888888889999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      |...|++++..+|. .+....+=.++.+.+.+
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            99999999999999 77777777777666554

>KOG4340|consensus

Probab=97.70  E-value=9.7e-05  Score=61.18  Aligned_cols=94  Identities=24%  Similarity=0.323  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCC--------
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL----DNT--------  198 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--------  198 (270)
                      .|....+.|...|+.|+|+.|+..|+.|++....++.+-+|+|+|+++.+++..|+....+.+..    .|.        
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te  222 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE  222 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence            46678889999999999999999999999999999999999999999999999999988887743    231        


Q ss_pred             --------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         199 --------Y---------VKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       199 --------~---------~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                              |         ..|+...+-++++.++++.|.+.+.
T Consensus       223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                    1         2477778889999999999988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.69  E-value=0.00047  Score=65.73  Aligned_cols=114  Identities=14%  Similarity=0.042  Sum_probs=78.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284         140 NKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE  217 (270)
Q Consensus       140 ~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  217 (270)
                      ..+.+.|++++|...|+...+..+-  +...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus       434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~  511 (697)
T PLN03081        434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLE  511 (697)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcH
Confidence            3344455555555555544432221  2235666666777777777777766543 2233 4556888888888889999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|...+++.+.++|++...+..+..++.+.|+..++..
T Consensus       512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            99999999999999998899999999999999887766

>KOG3785|consensus

Probab=97.69  E-value=0.00049  Score=58.41  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=81.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDA  219 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A  219 (270)
                      .+....||.-|+..++-.+..+.... ..-.-+|.|++++|+|++|+..|.-+..-+..+.+.+.++|.+++-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            45677899999999888776654433 45556899999999999999999999887778889999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         220 RKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ...-.+|    |.++--...+-.+-.++++
T Consensus       111 ~~~~~ka----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen  111 KSIAEKA----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence            9877665    5555444444444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.68  E-value=0.002  Score=49.98  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDNTYVKAYQRRAAARRSLNHFEDA  219 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~~~~A  219 (270)
                      ...+.=|.+.+++...+.++.-|.. .-.+.+|.....+|++.+|...|++++. +..++...++.++.+.+..+++.+|
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence            3344456677777777777777665 4577899999999999999999999985 6778999999999999999999999


Q ss_pred             HHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         220 RKDILKVLALEPN--NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       220 ~~~~~~al~~~p~--~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...+++..+.+|.  .+.....++.++..+|.+..+..
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes  181 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES  181 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence            9999999999996  46777888899999999886654

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.65  E-value=0.0022  Score=63.43  Aligned_cols=120  Identities=8%  Similarity=-0.068  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLK----LDNTYVKAYQRRAAA  209 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~~g~~  209 (270)
                      +......|.+.|++++|+..|.+..+.. .-+...|..+..++.+.|++++|.+.+.+...    +.| +...|..+-.+
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~a  588 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKA  588 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHH
Confidence            3344455666666666666666654431 12345566666666666666666666666654    233 34556666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |.+.|++++|.+.|+...+.+ +.+...+..+...+.+.|+..+++.
T Consensus       589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence            667777777777777666665 3455666666666666666665554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0027  Score=49.56  Aligned_cols=101  Identities=14%  Similarity=0.018  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      .....+.+..++..|++++|+..++.++....+.   ..+-.++|.+.+.++.+++|+..++..-.-. ..+..--.+|.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGD  167 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhh
Confidence            3456778899999999999999999999654333   4578889999999999999998765433211 12233566899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      ++...|+-++|+..|++++..+++.
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCCh
Confidence            9999999999999999999998433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.61  E-value=0.00012  Score=40.41  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT  198 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  198 (270)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35566666666666666666666666666653

...

>KOG3364|consensus

Probab=97.60  E-value=0.0024  Score=46.75  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKN---YVSAEADCTASLK-LDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~-~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      ....+++|.++.+..+   ..+.+.+++..++ -.| ......|.+|..++++++|+.|+.++..+|+.+|+|.+|....
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4567888888877654   5678899999996 444 3567889999999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q psy6284         241 AELNRKL  247 (270)
Q Consensus       241 ~~~~~~~  247 (270)
                      ..+..++
T Consensus       112 ~~ied~i  118 (149)
T KOG3364|consen  112 ETIEDKI  118 (149)
T ss_pred             HHHHHHH
Confidence            8877665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.59  E-value=0.0014  Score=62.43  Aligned_cols=116  Identities=11%  Similarity=-0.028  Sum_probs=78.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~  215 (270)
                      .....|.+.|++++|...|++.   .+.+...|..+...|.+.|++++|+..|++..... ..+...+..+..++...|+
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            3456677788888888877653   34566777777788888888888888887776532 2244566666777777777


Q ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         216 FEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       216 ~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++|.+.+...++.. +.+..++..|...+.+.|+..+|..
T Consensus       341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~  381 (697)
T PLN03081        341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN  381 (697)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence            777777777776665 4556666666666666666655544

>KOG2471|consensus

Probab=97.56  E-value=0.00025  Score=62.43  Aligned_cols=113  Identities=12%  Similarity=0.016  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVA-IQTYPH--------DAVFFANRALCFLKMKNYVSAEADCTASLKL-------  195 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------  195 (270)
                      +..+.-+.+.+|-.|+|.+|.+.+... +...|.        .+..++|+|.++++++.|..+...|.+|+..       
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            445666788899999999999887553 122222        3457899999999999999999999999951       


Q ss_pred             --CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         196 --DN---------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       196 --~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                        .|         ......|+.|..|...|+.-.|.++|.++...-..|+..|..+++|-
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC  379 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC  379 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence              12         34568999999999999999999999999999999999999999984

>KOG2796|consensus

Probab=97.56  E-value=0.00059  Score=55.68  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT----Y--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      .....|...++.||.+.|-.+|+..-+.    +  .....+..|.+.+|+-.++|.+|...+.+++..||.++.+-.+.|
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA  293 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA  293 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence            3456788999999999999999855432    1  234568889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      .|+.-+|+..+|++.++.++.+.|..
T Consensus       294 LcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  294 LCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            99999999999999999999999974

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.55  E-value=0.0018  Score=54.63  Aligned_cols=113  Identities=14%  Similarity=0.018  Sum_probs=74.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK-MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      ...+...+.+..+.|...|.+|++..+....+|...|..-+. .++.+.|...|+.+++..|.+...|......+..+++
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence            334444455557777788888875555566777777777555 4555558888888888888888888777777778888


Q ss_pred             HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCC
Q psy6284         216 FEDARKDILKVLALEPNNK---QAEIELAELNRKLNI  249 (270)
Q Consensus       216 ~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~  249 (270)
                      .+.|...|++++..-|...   .+|........+.|+
T Consensus        86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd  122 (280)
T PF05843_consen   86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD  122 (280)
T ss_dssp             HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence            8888888888877766554   455555555555554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376|consensus

Probab=97.54  E-value=3.9e-05  Score=67.21  Aligned_cols=87  Identities=23%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      +-+-|.-.+.-++|+.|+..|.++|+++|+++..+-.++.++...+++-.|+.++.++++++|....++...+.+...++
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34556677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcch
Q psy6284         249 IPLSPIK  255 (270)
Q Consensus       249 ~~~~a~~  255 (270)
                      .+.++..
T Consensus        87 ~~~~A~~   93 (476)
T KOG0376|consen   87 EFKKALL   93 (476)
T ss_pred             HHHHHHH
Confidence            9888766

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.54  E-value=0.0015  Score=46.22  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCCCHHHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKN-----------YVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      ++..++.+|++-+|++..+..+...+.+.   .++..-|.++..+..           +-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46788999999999999999999988775   566777777766533           3458999999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      |.+|.-+-....|++++.-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888777777788888888887765

>KOG3081|consensus

Probab=97.53  E-value=0.0053  Score=50.28  Aligned_cols=87  Identities=13%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         169 FANRALCFLKM----KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       169 ~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      ..-+|.++.++    ..+..|.-.|++.-.-.|..+......+.|+..+|+|++|...++.+|.-++++++...++..+-
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            33355555543    35778888888888767778888888999999999999999999999999999999999999998


Q ss_pred             HHhCCCCCcch
Q psy6284         245 RKLNIPLSPIK  255 (270)
Q Consensus       245 ~~~~~~~~a~~  255 (270)
                      ..+|...+...
T Consensus       252 ~~~Gkd~~~~~  262 (299)
T KOG3081|consen  252 LHLGKDAEVTE  262 (299)
T ss_pred             HHhCCChHHHH
Confidence            88998855544

>PLN03077 Protein ECB2; Provisional

Probab=97.52  E-value=0.0016  Score=63.66  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDA  219 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A  219 (270)
                      +.+.|++++|..+|+...+..+-  +...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-.++...|+.+.+
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHH
Confidence            33444444444444444322111  2234555555555666666666555543 23332 34455554455556666666


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         220 RKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ....+++++++|++...+..+..++...|+..++..
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            666677788899999999999999888888877765

>KOG0545|consensus

Probab=97.50  E-value=0.00052  Score=55.37  Aligned_cols=90  Identities=9%  Similarity=0.055  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKL--------DNTY----------VKAYQRRAAARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al  227 (270)
                      ..++-..|+-++++|+|.+|...|+.|+..        .|..          ...+.++++|+...|+|-++++.....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            357888999999999999999999998732        3443          3478899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         228 ALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       228 ~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+|+|..|++..+.++...=|..+|-.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA  285 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence            9999999999999999988777766654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.48  E-value=0.0041  Score=53.51  Aligned_cols=118  Identities=15%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .....+..+...|++++|.+....+++..-+.- +...  .-.+..++...=+...++.++..|+++..++.+|..+++.
T Consensus       265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~  341 (400)
T COG3071         265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN  341 (400)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence            344557777889999999999999998754433 2222  2234678889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.|.+|...|+.+++..|+ ...+..++.++.++|++..+..
T Consensus       342 ~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         342 KLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence            9999999999999999765 4567789999999999887755

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.47  E-value=0.0014  Score=59.29  Aligned_cols=100  Identities=22%  Similarity=0.156  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQ  204 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~  204 (270)
                      ..+.-++..|..+...|+.++|+..|++++.....    ...+++.+|.|+..+.+|++|..++.+..+.+..+. -..|
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y  344 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY  344 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence            34666788999999999999999999998853322    245899999999999999999999999998776532 2344


Q ss_pred             HHHHHHHHcCCH-------HHHHHHHHHHHhh
Q psy6284         205 RRAAARRSLNHF-------EDARKDILKVLAL  229 (270)
Q Consensus       205 ~~g~~~~~~g~~-------~~A~~~~~~al~~  229 (270)
                      ..|.|+..+|+.       ++|.+.|.++-.+
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            458888899999       8888888777554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.46  E-value=0.00027  Score=38.51  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      +++.+|.++..+|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666777777777777777777777776665

>KOG4151|consensus

Probab=97.45  E-value=0.00081  Score=62.38  Aligned_cols=117  Identities=30%  Similarity=0.488  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKM--KNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      +-.+...++.|+.+|+.++|..|.-.|..++.+.|.+    .....+.+.|++.+  ++|..++..|+-++...|...++
T Consensus        50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            4456678899999999999999999999999998843    56788888888764  68999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      ++.++.+|..++.++-|++++.-....+|.+..+.....++..
T Consensus       130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999777664444433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.45  E-value=0.00076  Score=41.34  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      +.++.+|..++++|+|++|...++.+++++|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4578889999999999999999999999999998876655443

>KOG3204|consensus

Probab=97.41  E-value=0.00013  Score=56.14  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=45.9

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCC
Q psy6284          16 IWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHH   79 (270)
Q Consensus        16 ~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~   79 (270)
                      .-.++|+.|+.+||+|+.||+.+.            .|..|+|+.|+++.++|.-+..+.|..+
T Consensus         6 ~~~vidg~~hllGrlAa~vaK~ll------------~g~kvvvvr~E~i~isg~f~r~k~~lrk   57 (197)
T KOG3204|consen    6 KLVVIDGRGHLLGRLAAIVAKQLL------------LGRKVVVVRCEEINISGNFYRNKLFLRK   57 (197)
T ss_pred             EEeeccchhhhhhhHHHHHHHHHh------------cCCeEEEEEEeEEEEecceecchHHHhh
Confidence            447999999999999999999999            8999999999999999998776645443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.37  E-value=0.0051  Score=60.38  Aligned_cols=121  Identities=11%  Similarity=-0.029  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVKAY  203 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~  203 (270)
                      ....|..++..|++++|...+.+++...+..     ..+...+|.++...|++++|...+++++.....      ...++
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            3446788899999999999999999865543     246788999999999999999999999975332      13467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLALEPN--------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+|.++...|++++|...+.+++.+-..        ...+...++.++...|+..++..
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  594 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ  594 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            78899999999999999999999886321        22345567778888888877755

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.33  E-value=0.0023  Score=56.76  Aligned_cols=59  Identities=17%  Similarity=0.060  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHFEDARKDILKV  226 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~a  226 (270)
                      +...+|.|..++|+.++|+..++..++..|.  +...++++-.++..++.|.++...+.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3444555555555555555555555554442  3345555555555555555555555443

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.33  E-value=0.00048  Score=38.63  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      ++.++|.+|..+|++++|++.|+++|.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456667777777777777777776443

>KOG2610|consensus

Probab=97.32  E-value=0.0056  Score=51.80  Aligned_cols=122  Identities=13%  Similarity=0.053  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHH---HHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVK---AYQRRAAA  209 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~---a~~~~g~~  209 (270)
                      ..-..+...+-+|++-+|.....+.|+-.|.+..++...-.+++.+|+.......+++++.. +|+-+-   .+-.++..
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34455677788999999999999999999999988888888888999999999999999976 766544   34445666


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...|-|++|.+.-.+++++||.|.-+...++.++..-+...++..
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence            7789999999999999999999999999999999888777766544

>KOG3824|consensus

Probab=97.32  E-value=0.001  Score=55.45  Aligned_cols=73  Identities=21%  Similarity=0.109  Sum_probs=65.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      +.|.-..+.|+.+.|...|+.|+.++|+++.++..+|......++.-+|-++|.+||.++|.|.+|..+....
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3344446789999999999999999999999999999999999999999999999999999999998877654

>smart00028 TPR Tetratricopeptide repeats

Probab=97.32  E-value=0.0004  Score=36.84  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      +++.+|.++..++++++|+..|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.31  E-value=0.0048  Score=60.57  Aligned_cols=122  Identities=12%  Similarity=-0.001  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------C
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT--------Y  199 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~  199 (270)
                      .....|..+...|++++|...+.+++......      ..++.++|.+++..|++++|...+++++.+...        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            34567888899999999999999999764321      346778899999999999999999999875221        2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPN-----NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...+..+|.++...|++++|...+.+++.+...     ...++..++.+....|++..+..
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            334567889999999999999999999876332     24555667778888888766654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.29  E-value=0.0021  Score=55.69  Aligned_cols=92  Identities=17%  Similarity=0.338  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--------D----------AVFFANRALCFLKMKNYVSAEADCTASLKLD  196 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  196 (270)
                      ....|..+|++++|..|+-.|..+|++...        .          ..+-.-+..||+++++.+.|+...-+.|-++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            456688889999999999999999987432        1          1245668999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284         197 NTYVKAYQRRAAARRSLNHFEDARKDILKV  226 (270)
Q Consensus       197 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  226 (270)
                      |.++.-|++.|.+...+.+|.+|-..+--+
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997766544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.28  E-value=0.0024  Score=43.97  Aligned_cols=66  Identities=18%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCC
Q psy6284         185 AEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIP  250 (270)
Q Consensus       185 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~  250 (270)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|++  ..+...+-.+...+|..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            3455667777777777777777777777777777777777777777654  66777777776666653

>KOG4814|consensus

Probab=97.26  E-value=0.0039  Score=56.77  Aligned_cols=96  Identities=17%  Similarity=0.144  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      .+.+.+...|+..+|..+++.|...+..-|.+      .....+++.||+.+.+.+.|.+.+++|-+.+|.++-..+..-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            46678889999999999999999999987765      467889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh
Q psy6284         208 AARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      ++...-|.-++|+....+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999998876554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.23  E-value=0.00069  Score=54.10  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      ..+.++.+.|.+.|.+++.+-|.+...|+++|....+.|+++.|.+.|++.++++|++.......
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k   69 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK   69 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence            34556777777777888888887777888888777778888888888888888887776544433

>PLN03077 Protein ECB2; Provisional

Probab=97.22  E-value=0.0039  Score=60.94  Aligned_cols=111  Identities=9%  Similarity=-0.012  Sum_probs=61.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHH
Q psy6284         140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFE  217 (270)
Q Consensus       140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~  217 (270)
                      ..|.+.|++++|...|+..    +.+...|..+...|.+.|+.++|+..|++....  .|+ ...+..+-.++.+.|.++
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~  606 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVT  606 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHH
Confidence            4555666666666666553    345556666666666666666666666665542  232 233444444555666666


Q ss_pred             HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         218 DARKDILKVLALEP--NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       218 ~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +|.+.|+...+..+  -+...+..+..++.+.|...+|..
T Consensus       607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~  646 (857)
T PLN03077        607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN  646 (857)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence            66666665553221  123455556666666666555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.22  E-value=0.00068  Score=36.84  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  199 (270)
                      +++++|.|+..+|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56677777777777777777777777776653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.22  E-value=0.0036  Score=51.07  Aligned_cols=79  Identities=20%  Similarity=-0.005  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA---EI  238 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~  238 (270)
                      .+.-+++-|...+..|++++|+..|+.+....|.   ..++...++.++++.+++++|+..+.+-+++.|+++.+   .+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3568999999999999999999999999988874   46899999999999999999999999999999988743   44


Q ss_pred             HHHHH
Q psy6284         239 ELAEL  243 (270)
Q Consensus       239 ~l~~~  243 (270)
                      ..+.+
T Consensus       113 lkgLs  117 (254)
T COG4105         113 LKGLS  117 (254)
T ss_pred             HHHHH
Confidence            44444

>KOG1308|consensus

Probab=97.22  E-value=5.9e-05  Score=63.42  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=74.0

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         177 LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +..|.++.|++.|..+|.++|.....|-.+|.++..++....|+.+|..++.+||+...-+...+.++..+|+..++-.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            3467799999999999999999999999999999999999999999999999999999999999999999999877655

>KOG3081|consensus

Probab=97.21  E-value=0.017  Score=47.34  Aligned_cols=94  Identities=14%  Similarity=0.203  Sum_probs=81.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR-KDI  223 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~  223 (270)
                      .+.+.+|.-.|+..-+..|..+......|.|++.+++|++|....+.++.-++.++.++-++-.+-..+|...++. +.+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            3468999999999888788999999999999999999999999999999999999999999999999999887765 455


Q ss_pred             HHHHhhCCCCHHHHH
Q psy6284         224 LKVLALEPNNKQAEI  238 (270)
Q Consensus       224 ~~al~~~p~~~~a~~  238 (270)
                      .+....+|+++-+..
T Consensus       266 ~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  266 SQLKLSHPEHPFVKH  280 (299)
T ss_pred             HHHHhcCCcchHHHH
Confidence            666677888775543

>PRK10941 hypothetical protein; Provisional

Probab=97.21  E-value=0.007  Score=50.49  Aligned_cols=77  Identities=16%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+.+.=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+.+.+-.-+.++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            45566778899999999999999999999999999999999999999999999999999999999998877666554

>KOG2396|consensus

Probab=97.19  E-value=0.0057  Score=54.24  Aligned_cols=95  Identities=18%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy6284         149 GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH-FEDARKDILKVL  227 (270)
Q Consensus       149 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al  227 (270)
                      ..-+..|+.|+...+.++.+|.+-.....+.+.+.+.-..|.+++...|+++..|...|.-.+..+. .+.|...|.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3445679999999999999999887666666669999999999999999999999999998888776 999999999999


Q ss_pred             hhCCCCHHHHHHHHHH
Q psy6284         228 ALEPNNKQAEIELAEL  243 (270)
Q Consensus       228 ~~~p~~~~a~~~l~~~  243 (270)
                      +.+|+++..|...-.+
T Consensus       168 R~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hcCCCChHHHHHHHHH
Confidence            9999999988765443

>KOG1915|consensus

Probab=97.13  E-value=0.011  Score=52.33  Aligned_cols=103  Identities=11%  Similarity=0.043  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..|..-|..--.++++..|.+.|.+||+.+..+..+|...+.+-++.+....|...+++|+.+-|.-.+.||..-..--.
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            34566677777899999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHH
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQ  235 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~  235 (270)
                      +|+...|.+.|++=+...|+...
T Consensus       154 LgNi~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCcHHH
Confidence            99999999999999999997543

>smart00028 TPR Tetratricopeptide repeats

Probab=97.09  E-value=0.0011  Score=34.96  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT  198 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  198 (270)
                      .++.++|.++..+++++.|+.++++++.++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45777888888888888888888888877764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.09  E-value=0.0079  Score=54.51  Aligned_cols=107  Identities=17%  Similarity=0.092  Sum_probs=90.1

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQRRAAARRSLNHFEDA  219 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A  219 (270)
                      ...+...|...........|+.+...+..|.++...|+.++|++.+++++......    .-.++.+|.++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            35678889999999999999999999999999999999999999999999644432    34788999999999999999


Q ss_pred             HHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCC
Q psy6284         220 RKDILKVLALEPNNK-QAEIELAELNRKLNIP  250 (270)
Q Consensus       220 ~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~  250 (270)
                      ..+|.+..+.+.=.+ -..+..+.|+..+++.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999999765543 4455566677777776

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.08  E-value=0.0063  Score=45.80  Aligned_cols=61  Identities=13%  Similarity=0.049  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      ..+...+..+...|++++|+..+.+++..+|.+..+|..+-.+|..+|+..+|+..|+++.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3466677888999999999999999999999999999999999999999999999998775

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.06  E-value=0.013  Score=52.06  Aligned_cols=107  Identities=14%  Similarity=0.173  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVKAYQRRAAARRS  212 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~  212 (270)
                      ...|.++.+.|+.++|+++|+..++..|.  +..+++|+-.|++.++.|.++...+.+-=.+ -|.+....|..|....+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            35677888999999999999999988775  4669999999999999999999888775333 25666666666665433


Q ss_pred             -cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         213 -LNH---------------FEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       213 -~g~---------------~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                       .++               -..|++.+.+|++.||.-+.....+..
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~  388 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS  388 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence             222               235789999999999998876655443

The molecular function of this protein is uncertain.

>KOG1941|consensus

Probab=97.05  E-value=0.0025  Score=54.33  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC---
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDN------TY---  199 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~---  199 (270)
                      ....|+.+...+.|+++++.|++|+.+.-.+      ..++..+|..|..++|+++|+-...++.++-.      .+   
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky  204 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY  204 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence            3446777777788888888888888764332      24677788888888888888777777776532      11   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHhCCCCCc
Q psy6284         200 -VKAYQRRAAARRSLNHFEDARKDILKVLALE--PNNKQA----EIELAELNRKLNIPLSP  253 (270)
Q Consensus       200 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a----~~~l~~~~~~~~~~~~a  253 (270)
                       .-++|.++.++..+|+.-+|.++++.+.++.  -.|...    ..-++.++...|+.+.+
T Consensus       205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence             2366777888888888888888888776542  333322    23455556666655443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.98  E-value=0.0015  Score=36.50  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      +.++|.+|..+|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.94  E-value=0.031  Score=47.15  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q psy6284         134 YSKEQGNKLVK-EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAA  209 (270)
Q Consensus       134 ~~~~~g~~~~~-~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~  209 (270)
                      .|...|..-+. .++.+.|...|+.+++..|.+...|......+..+++.+.|...|++++..-|...   ..|-.+...
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f  116 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF  116 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            35555666566 67777799999999999999999999999999999999999999999998766544   577777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      =...|+.+...+..+++.++-|++.......
T Consensus       117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  117 ESKYGDLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            7889999999999999999999866555533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.91  E-value=0.12  Score=39.41  Aligned_cols=112  Identities=12%  Similarity=-0.096  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+.+........++.+++...+...--+.|..+.+-..-|..++..|++.+|+..++.+..-.|..+-+--.++.|++.+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            45666778888899999999998888899999999999999999999999999999999999999888888889999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      |+.+-=.. -+.+++ .+.++.+......++..-
T Consensus        92 ~D~~Wr~~-A~evle-~~~d~~a~~Lv~~Ll~~~  123 (160)
T PF09613_consen   92 GDPSWRRY-ADEVLE-SGADPDARALVRALLARA  123 (160)
T ss_pred             CChHHHHH-HHHHHh-cCCChHHHHHHHHHHHhc
Confidence            99864332 223444 445777777777666544

>KOG1915|consensus

Probab=96.89  E-value=0.017  Score=51.20  Aligned_cols=110  Identities=19%  Similarity=0.168  Sum_probs=90.6

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         143 VKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      ....|.+.+...|+.+|++-|+.    +.+|...|....++.+...|...+-.||...|.+ +.+-..-..-..+++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence            45678899999999999999874    6788888888889999999999999999998854 222222334457889999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +...|++-|+..|+|-.+|...+.+...+|+...+
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999887554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.87  E-value=0.022  Score=45.95  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHHccCH-------HHHHHHHHHHHhcCC------CCH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQT----YPHD---AVFFANRALCFLKMKNY-------VSAEADCTASLKLDN------TYV  200 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~----~p~~---~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p------~~~  200 (270)
                      .+-....+++|+..|.-|+-.    ....   +.++..+|.+|..+++.       ..|+..|.+++....      +..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            445566888999988888753    1122   56888999999999984       457777777776543      235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      ...|.+|....++|++++|++.|.+++..--.+
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            788999999999999999999999999764433

>KOG1941|consensus

Probab=96.85  E-value=0.0066  Score=51.89  Aligned_cols=97  Identities=14%  Similarity=0.076  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------C
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----------DAVFFANRALCFLKMKNYVSAEADCTASLKLD------N  197 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p  197 (270)
                      .+...|..+-..+||++|+-+..+|.++-..          ...+.+.++..+..+|+.-.|.++|+++.++.      +
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            4566788888999999999999999987332          14578899999999999999999999998763      3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALE  230 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~  230 (270)
                      .+......+|.+|...|+.+.|..-|+.|...-
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            456677889999999999999999999987654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.81  E-value=0.037  Score=42.14  Aligned_cols=84  Identities=17%  Similarity=-0.013  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ..+.....+-+..++.+++...+..+--+.|..+..-..-|..+...|++.+|+..|+.+..-.|..+-+...++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            35566666777888999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCC
Q psy6284         247 LNIP  250 (270)
Q Consensus       247 ~~~~  250 (270)
                      +|++
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            8886

>KOG1586|consensus

Probab=96.80  E-value=0.034  Score=44.83  Aligned_cols=106  Identities=17%  Similarity=0.103  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCC------C
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLK-MKNYVSAEADCTASLKLDN------T  198 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p------~  198 (270)
                      +..+.+.++ .|+..+..+|+.++++++++.-+-.      ..+..+|..|-. +.+++.|+.+|+.+-+...      .
T Consensus        74 at~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   74 ATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            334444444 4677799999999999999865543      345567777755 4889999999999886543      2


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  238 (270)
                      .-+.+...|..-..+++|.+|+..|+++....-+|+-..+
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            2356777777778899999999999999887777664443

>KOG1585|consensus

Probab=96.79  E-value=0.046  Score=44.44  Aligned_cols=123  Identities=13%  Similarity=0.029  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLD-----NTYV  200 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~  200 (270)
                      +..+...++.+...++|++|-.++.+|.+-..++      ..+|-..|.+...+..+.++...++++..+.     |+-.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            3445566777778899999999999999765444      3567777888888999999999999999774     4444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH---HHHHHhCCCCCcc
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIELA---ELNRKLNIPLSPI  254 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~---~~~~~~~~~~~a~  254 (270)
                      ..-..+|--....-++++|++.|++++.+-.+   ...+...++   .++.++..+.++.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence            44444554556778999999999999876433   344444444   4455556665553

>KOG2471|consensus

Probab=96.73  E-value=0.0021  Score=56.73  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-T--------YP---------HDAVFFANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~--------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      ...+.+.|..+|+.|.|.-++.+|.+||. .        .|         ....+.||.|..|+..|+...|.++|.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            34467889999999999999999999995 1        12         235799999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHH
Q psy6284         194 KLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       194 ~~~p~~~~a~~~~g~~~~~  212 (270)
                      ...-.++..|+++|.|...
T Consensus       363 ~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHH
Confidence            9999999999999998764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.67  E-value=0.032  Score=38.39  Aligned_cols=49  Identities=20%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284         151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       151 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  199 (270)
                      .+..+.+.++.+|++..+.+.+|.++...|++++|++.+-.++..++++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3567888999999999999999999999999999999999999999876

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.64  E-value=0.1  Score=45.05  Aligned_cols=118  Identities=21%  Similarity=0.092  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C-C-----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DAVFFANRALCFLKMKNYVSAEADCTASLKL--D-N-----  197 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p-----  197 (270)
                      +.+..+...+..+.+.|.++.|...+.++....+.    .+.+.+..+..+...|+..+|+..++..+..  . +     
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            44566888899999999999999999998876532    5678888899999999999999998888871  1 0     


Q ss_pred             --------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         198 --------------------------TYVKAYQRRAAARRSL------NHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       198 --------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                                                ...++++.+|......      ++.++++..|..+++++|+...++...+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence                                      1135778888888777      89999999999999999999999999998876


Q ss_pred             Hh
Q psy6284         246 KL  247 (270)
Q Consensus       246 ~~  247 (270)
                      .+
T Consensus       304 ~~  305 (352)
T PF02259_consen  304 KL  305 (352)
T ss_pred             HH
Confidence            65

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.52  E-value=0.0049  Score=49.40  Aligned_cols=60  Identities=25%  Similarity=0.178  Sum_probs=56.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (270)
                      ...+.++.+.|.+.|.+++++-|+...-|+.+|....+.|+++.|...|+++++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999999999999999999999999999999999999999653

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.49  E-value=0.0054  Score=51.33  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         154 KYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR-RAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      .|.++....|+++..|...+.--.+.+-|.+.-..|.+++...|.+...|.. .+.-+...++++.|...|.++|++||+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            4556666788999999998888888899999999999999999999999887 455678899999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy6284         233 NKQAEIELAE  242 (270)
Q Consensus       233 ~~~a~~~l~~  242 (270)
                      ++..|...-.
T Consensus       175 ~p~iw~eyfr  184 (435)
T COG5191         175 SPRIWIEYFR  184 (435)
T ss_pred             CchHHHHHHH
Confidence            9998876543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.48  E-value=0.18  Score=44.07  Aligned_cols=110  Identities=13%  Similarity=0.093  Sum_probs=80.3

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCCH-
Q psy6284         135 SKEQGNKLVK---EGKWGEAIEKYNVAI-QTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTYV-  200 (270)
Q Consensus       135 ~~~~g~~~~~---~g~~~~A~~~y~~al-~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~-  200 (270)
                      ....|..+.+   .|+.++|+..+..++ ...+.+++.+...|.+|-.+         ..+++|+.+|.+++.++|+.. 
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~  261 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS  261 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence            4456777777   899999999998854 44567788888888887442         347889999999998876432 


Q ss_pred             --------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         201 --------------------------------------------KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       201 --------------------------------------------~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                                                                  +.+-.++.+..-.|++++|++.+++++++.|.....
T Consensus       262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l  341 (374)
T PF13281_consen  262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL  341 (374)
T ss_pred             hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence                                                        122235666677888999999999999998877665


Q ss_pred             HHHHHHHH
Q psy6284         237 EIELAELN  244 (270)
Q Consensus       237 ~~~l~~~~  244 (270)
                      ...+..+.
T Consensus       342 ~St~~ni~  349 (374)
T PF13281_consen  342 ESTLENIK  349 (374)
T ss_pred             HHHHHHHH
Confidence            55555443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.40  E-value=0.076  Score=47.31  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=78.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      -......|+...|-.....+|...|.++.....++.++..+|+|+.+.++...+-..-..-.++...+-..+..+|++++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            34456789999999999999999999999999999999999999999998877666555555666666667778888888


Q ss_pred             HHHHHHHHHhhCCCCHHHHH
Q psy6284         219 ARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~  238 (270)
                      |...-.-.|.-+-+++++..
T Consensus       376 a~s~a~~~l~~eie~~ei~~  395 (831)
T PRK15180        376 ALSTAEMMLSNEIEDEEVLT  395 (831)
T ss_pred             HHHHHHHHhccccCChhhee
Confidence            88777666655555555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.30  E-value=0.11  Score=45.36  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------CC------------CC---HHHHHHHHH
Q psy6284         158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--------------DN------------TY---VKAYQRRAA  208 (270)
Q Consensus       158 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~~g~  208 (270)
                      .|..+|.+.+.+..++.++..+|+...|.+.+++|+-.              ++            .|   ..+.++...
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            35778999999999999999999999888888887621              11            11   247777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPN-NKQAEIELAELN  244 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~  244 (270)
                      .+.+.|.+..|++.++-.+.+||. |+-.-......+
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~  148 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY  148 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            888999999999999999999998 775554444443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1070|consensus

Probab=96.26  E-value=0.09  Score=52.32  Aligned_cols=111  Identities=15%  Similarity=0.031  Sum_probs=89.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~  216 (270)
                      ...|-+.+++++|.+.|+.-++...+....|...|..++++++-++|-..+.+|+..-|.  +....-..|+.-+..|+.
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            444556678888888888888877777888888888888888888888888888888876  777777788888888888


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +.++..|+-.+.-.|.-.+.|.-......+.|.
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            888888888888888888888877776666554

>KOG2053|consensus

Probab=96.25  E-value=0.11  Score=49.46  Aligned_cols=107  Identities=11%  Similarity=-0.008  Sum_probs=89.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF  216 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  216 (270)
                      -+|..+++.|.+++|..+++..-...+++-..+--+-.||..++.+++|..+|++++..+|. ..-.+.+-++|.+-+.|
T Consensus        48 LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            34888999999999997776666667778888888999999999999999999999999999 88888888999999998


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         217 EDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      .+-.+.--+..+.-|.++-.......+.
T Consensus       127 k~qQkaa~~LyK~~pk~~yyfWsV~Sli  154 (932)
T KOG2053|consen  127 KKQQKAALQLYKNFPKRAYYFWSVISLI  154 (932)
T ss_pred             HHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence            8877776677778888875555444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.15  E-value=0.16  Score=39.72  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHH----H
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDN--TYVK----A  202 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~----a  202 (270)
                      ...+...|..|.+.|+++.|++.|.++.+.....   .+.++++-.+.+..+++..+.....++-.+-.  .+..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4467889999999999999999999988865433   45777788888889999999999988876533  2222    2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al  227 (270)
                      ....|..+...++|.+|-+.|-.++
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            3345777888999999999887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.057  Score=44.65  Aligned_cols=77  Identities=18%  Similarity=0.146  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      ...|+=..+...++++.|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+++++..++.-|+++.+-.....+.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34445556667778888888888888888888888888888888888888888888888888888876665555443

>KOG1586|consensus

Probab=96.09  E-value=0.12  Score=41.76  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-H-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284         135 SKEQGNKLVKE-GKWGEAIEKYNVAIQTYPHD-A-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK  201 (270)
Q Consensus       135 ~~~~g~~~~~~-g~~~~A~~~y~~al~~~p~~-~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~  201 (270)
                      ..+.|..|-.. .++++||.+|+++-+....+ .     .++.-.|..-..+++|.+|+..|+++....-++      .+
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            33455555444 78999999999998875443 2     234444555556899999999999988665443      23


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHh
Q psy6284         202 -AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA--EIELAELNRKL  247 (270)
Q Consensus       202 -a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~l~~~~~~~  247 (270)
                       .++..|.|++-..+.-.+...+++...++|.....  ...|..+...+
T Consensus       196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai  244 (288)
T KOG1586|consen  196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI  244 (288)
T ss_pred             HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence             35556888888899999999999999999976533  33444444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.19  Score=45.79  Aligned_cols=107  Identities=13%  Similarity=-0.008  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHhcCCCCHHHHHHH------HHHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC-TASLKLDNTYVKAYQRR------AAAR  210 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~al~~~p~~~~a~~~~------g~~~  210 (270)
                      ....+...++...+.-....++..+|.++.++.++|.+....+....++..+ ..+.+..|.+.....-+      |...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            4556667788888888999999999999999999999998877766655555 55899999988766665      8888


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      ..+|+..++...++++..+.|.++.+...+....
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r  186 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTAR  186 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence            9999999999999999999999987777666653

>KOG0530|consensus

Probab=96.06  E-value=0.13  Score=42.26  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=95.7

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q psy6284         143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE-DAR  220 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~-~A~  220 (270)
                      ++...-..|+..-..+|.++|-+..+|..+=.|+..++ +..+=++++++++.-+|.|-..|.-+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            45556678999999999999999999988888887765 6777888889999999999999999988888899888 888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.....+..|..|-.||....-+....+.+...+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~  168 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA  168 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            88999999999999999999999887777655444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.05  E-value=0.099  Score=34.63  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF---ANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      .+....+.|..+|.+.+.++|+..++++|+..++.+..+   -.+..+|...|+|.+++...-.-+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999888776544   445566677788888777654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2610|consensus

Probab=95.95  E-value=0.098  Score=44.55  Aligned_cols=91  Identities=12%  Similarity=0.038  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQT-YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ++-.-..+|..|+...-...+.+.+-. +|+-   .-+.-..+.++...|-|++|....++++++++.+..+...++.++
T Consensus       140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            444455667777777777777777766 4444   334455777788888888888888888888888888888888877


Q ss_pred             HHcCCHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILK  225 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~  225 (270)
                      ...|++.++.+...+
T Consensus       220 em~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  220 EMNGRHKEGKEFMYK  234 (491)
T ss_pred             HhcchhhhHHHHHHh
Confidence            777777777766553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.89  E-value=0.51  Score=41.16  Aligned_cols=88  Identities=14%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      -.+....-.|+|+.|.+.|+.-+. +|..-. -+-.+-+--..+|+.+.|+.+.+++...-|.-++++...=...+..|+
T Consensus       125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         125 LEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD  203 (531)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence            345555666777777777765542 333211 111111222345666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHH
Q psy6284         216 FEDARKDILK  225 (270)
Q Consensus       216 ~~~A~~~~~~  225 (270)
                      ++.|++..+.
T Consensus       204 Wd~AlkLvd~  213 (531)
T COG3898         204 WDGALKLVDA  213 (531)
T ss_pred             hHHHHHHHHH
Confidence            6666665553

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.88  E-value=0.23  Score=42.72  Aligned_cols=88  Identities=13%  Similarity=0.010  Sum_probs=52.4

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284         154 KYNVAIQTYPHDAVFFANRALCFLKMKN------------YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK  221 (270)
Q Consensus       154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  221 (270)
                      .|++.+..+|.+..+|..+....-.+-.            .+..+..+++|++.+|++...+..+=.+.....+.++..+
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4556666666666666666554443322            2345566666666666666666665555566666666666


Q ss_pred             HHHHHHhhCCCCHHHHHHHH
Q psy6284         222 DILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       222 ~~~~al~~~p~~~~a~~~l~  241 (270)
                      -+++++..+|++...|...-
T Consensus        87 ~we~~l~~~~~~~~LW~~yL  106 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYL  106 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHH
Confidence            66666666666666655443

>KOG1310|consensus

Probab=95.86  E-value=0.023  Score=50.99  Aligned_cols=85  Identities=18%  Similarity=0.079  Sum_probs=73.5

Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284         178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS---LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI  254 (270)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  254 (270)
                      .......|+.+|.+++...|.....+.+++.++.+   .|+.-.|+.++..++++||....|+..|+.++..++.+++++
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            34556789999999999999999999999988876   568888999999999999999999999999999999999998


Q ss_pred             h--HhhhcCC
Q psy6284         255 K--VDFLHNP  262 (270)
Q Consensus       255 ~--~~~~~~~  262 (270)
                      .  -++.+.+
T Consensus       466 ~~~~alq~~~  475 (758)
T KOG1310|consen  466 SCHWALQMSF  475 (758)
T ss_pred             hhHHHHhhcC
Confidence            8  3444433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.1  Score=43.67  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----------------------
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL----------------------  224 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~----------------------  224 (270)
                      ..-+.-+.-....+++.+|...+..++...|.+..+...++.+|...|+.+.|...+.                      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3455556667789999999999999999999999999999999999999977766554                      


Q ss_pred             ------------HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         225 ------------KVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       225 ------------~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                  +.+..||+|.++...++..+...|+...++.
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale  257 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE  257 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                        4455678888888888888888888777765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.71  E-value=0.027  Score=32.05  Aligned_cols=27  Identities=19%  Similarity=0.101  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      ++.++|.+|..+|++++|+..+++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            445555555555555555555555554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.67  E-value=0.25  Score=37.14  Aligned_cols=108  Identities=13%  Similarity=-0.100  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+.+.........+..++...+...--+.|+.+.+-.--|..+...|++.+|+..++.+..-.+..+-+--.++.|++.+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34555666666899999988888777789999999999999999999999999999999998888887777889999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      ||.+-=.-. ..++.. -.++++......+
T Consensus        92 ~Dp~Wr~~A-~~~le~-~~~~~a~~Lv~al  119 (153)
T TIGR02561        92 GDAEWHVHA-DEVLAR-DADADAVALVRAL  119 (153)
T ss_pred             CChHHHHHH-HHHHHh-CCCHhHHHHHHHH
Confidence            998643322 233333 3445554444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.63  E-value=0.061  Score=37.25  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYPHD---------AVFFANRALCFLKMKNYVSAEADCTASLKL  195 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  195 (270)
                      ..+.|+|.+|++.+.+.++.....         ..+..++|.++...|++++|+..+++++.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456788888888877777653221         234555555555666666666666655544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.60  E-value=0.036  Score=31.48  Aligned_cols=29  Identities=24%  Similarity=0.302  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            57889999999999999999999999875

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.60  E-value=0.11  Score=50.87  Aligned_cols=111  Identities=13%  Similarity=0.128  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMK-------NYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      ...+++...+.|++|+..|++.-.-.|..   -++.+..|.+.+..-       .+.+|+.-|++.- -.|.-+--|+..
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            34667788899999999999998888875   468888888887642       4677777776543 346677788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      |.+|.++|++++-+++|.-|++.-|+++.+......+-.++.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH  600 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999887766666554443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.52  E-value=0.087  Score=36.48  Aligned_cols=57  Identities=18%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         175 CFLKMKNYVSAEADCTASLKLDNT---------YVKAYQRRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      -.++.++|.+|++.+.+.+.....         ...+..++|.++...|++++|+..++.++++-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345789999999888888865321         246788899999999999999999999998754

>KOG4507|consensus

Probab=95.49  E-value=0.082  Score=48.15  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      .+.+.++.+.+.|-.-+|-..+.++|.++...+..++.+|.+++.+.+.+.|++.++.|+.++|+++..-..+-.+.+
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            466889999999999999999999999998899999999999999999999999999999999999877666555444

>KOG0529|consensus

Probab=95.38  E-value=0.28  Score=42.88  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN--YVSAEADCTASLKLDNTYVKAYQRRAAARRSL----NHFEDAR  220 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~----g~~~~A~  220 (270)
                      -+++-+.+-..+|..+|+...+|+.+..++.+...  +..=++.|+++++.||.|..+|..+-.+....    ....+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            56777888899999999999999999999988764  67889999999999999888876665554432    2367788


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      +...+++.-|+.|-.||.....++..+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            999999999999999999999988754

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.35  E-value=0.42  Score=41.29  Aligned_cols=101  Identities=24%  Similarity=0.189  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCC-C-------------------------C-------HHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-TYP-H-------------------------D-------AVFFANRALCFL  177 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~p-~-------------------------~-------~~~~~~~a~~~~  177 (270)
                      .....+.+..+...|+-.+|+..+...+. ... .                         .       ..++..+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            34566778888999999999999988887 111 0                         1       235666666555


Q ss_pred             Hc------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy6284         178 KM------KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF-----------------EDARKDILKVLALEPN  232 (270)
Q Consensus       178 ~~------~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~al~~~p~  232 (270)
                      .+      +..++++..|.+++.++|.+.++|+.+|..+..+-+.                 ..|+..|-+|+.+.+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            66      7888999999999999999999999999988754322                 3478888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.17  Score=41.82  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=65.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ..=..+...++++.|..+-.+.+.++|.++.-+.-+|.+|.++|.+..|+.+++..+...|+.+.+-.-++...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            44456778899999999999999999999999999999999999999999999999999999887766655443

>KOG0529|consensus

Probab=95.29  E-value=1.2  Score=38.97  Aligned_cols=117  Identities=13%  Similarity=0.016  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhcCCCCH
Q psy6284         134 YSKEQGNKLVKEGKWG-EAIEKYNVAIQTYPHDAVFFANRALCFLKMK------------NYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~-~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~  200 (270)
                      .....-....+.|.|+ +++..=.+.++.+|+...+|+.+=.++....            -+++-+.....++..+|+..
T Consensus        30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY  109 (421)
T KOG0529|consen   30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY  109 (421)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence            3444444455566665 5666666677789999888877766654432            34555677788999999999


Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         201 KAYQRRAAARRSLN--HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       201 ~a~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      .+|+-+..++.+.+  ++..-++.+++++++||.|-.+|.....+.......
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            99999999998766  468889999999999999999999998887766544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.26  E-value=0.036  Score=31.34  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      .+|..+|.+-...++|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35777888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3364|consensus

Probab=95.17  E-value=0.35  Score=35.72  Aligned_cols=77  Identities=14%  Similarity=0.098  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEG---KWGEAIEKYNVAIQ-TYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       133 ~~~~~~g~~~~~~g---~~~~A~~~y~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      +..++.+..+.+..   +..+.|..+...++ -.|. .-+..|.+|..++++++|+.++.+++.+++.+|+|..+.-..-
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            34566666666544   56788889998886 4443 3467888999999999999999999999999999998765544


Q ss_pred             HH
Q psy6284         208 AA  209 (270)
Q Consensus       208 ~~  209 (270)
                      .+
T Consensus       113 ~i  114 (149)
T KOG3364|consen  113 TI  114 (149)
T ss_pred             HH
Confidence            33

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.17  E-value=1.4  Score=37.10  Aligned_cols=112  Identities=14%  Similarity=-0.047  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCC
Q psy6284         132 AVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMK-------NYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       132 a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~  199 (270)
                      +......|..++.    ..|+.+|...|.++.+..-.. ..+.+++|.+|..-.       +...|+..+.++....  +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence            3356667888776    459999999999998874333 345888888886641       3347888898888776  8


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         200 VKAYQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       200 ~~a~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      +.+.+.+|.+|..    ..++++|...|.++.+...  ..+...++ ++..-|
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            8899999988854    3389999999999999876  88888888 655555

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.11  E-value=0.5  Score=35.52  Aligned_cols=74  Identities=12%  Similarity=-0.032  Sum_probs=42.2

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         177 LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       177 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +...+++++...+...--+.|.....-..-|..+...|++.+|+..|+....-.+..+-+...++.|+..+|++
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33555555555555555555655555555566666666666666666655555555555555555555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.03  E-value=1.2  Score=39.59  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHH--------------------------------------
Q psy6284         128 RIASAVYSKEQGNKLVKEGK-WGEAIEKYNVAIQTYPHDAVF--------------------------------------  168 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~p~~~~~--------------------------------------  168 (270)
                      +...+--+..-+..+.+.|. =++|+..++.++...|.+..+                                      
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            33344456666777777777 678888888888877776421                                      


Q ss_pred             ----------HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284         169 ----------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK  225 (270)
Q Consensus       169 ----------~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  225 (270)
                                ...=|.-++..|+|.++.-...=+.+++| ++.++..+|.++....+|++|..++..
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence                      12222333445666666666666666666 666666666666666666666666653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1070|consensus

Probab=95.01  E-value=0.47  Score=47.59  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ....|...|..++++.+-+.|...+.+||.-.|.  +.....--|.+-++.|+-+.+...|+-.+..+|.-...|..+..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            4556888899999999999999999999999998  77888889999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                      .-.+.|+.+-++..|++++.+.-.-..+
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence            9999999999999999999886544433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.95  E-value=0.12  Score=28.87  Aligned_cols=33  Identities=15%  Similarity=0.023  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDIL--KVLALEPNN  233 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~~  233 (270)
                      +.++.+|..+...|++++|+..|+  -+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456667777777777777777733  666666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.81  E-value=0.15  Score=42.53  Aligned_cols=62  Identities=16%  Similarity=0.066  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       151 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      |+.+|.+|+.+.|.+...|+.+|.++...++.-.|+-+|-+++.....++.|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997776678888888877766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.80  E-value=0.29  Score=43.35  Aligned_cols=58  Identities=14%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA  191 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  191 (270)
                      ......|.-+|.+|+|.++..+-.-..++.| .+.+|-.+|.|.+..++|++|..++..
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3466778889999999999999888899999 899999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.48  Score=43.29  Aligned_cols=107  Identities=17%  Similarity=0.008  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q psy6284         149 GEAIEKYNVAIQTYPHDAVFFAN--RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK-  225 (270)
Q Consensus       149 ~~A~~~y~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~-  225 (270)
                      ..|+..+...+.++|.++.++..  +++.+..+++...+......++..+|.+..++.++|.++...|....+...+.. 
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33777777777888888876444  478888889998999999999999999999999999999888887777766666 


Q ss_pred             HHhhCCCCHHHHHHH------HHHHHHhCCCCCcch
Q psy6284         226 VLALEPNNKQAEIEL------AELNRKLNIPLSPIK  255 (270)
Q Consensus       226 al~~~p~~~~a~~~l------~~~~~~~~~~~~a~~  255 (270)
                      +....|.|.+....+      +.....+|+..++..
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  163 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL  163 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH
Confidence            899999999998888      666666666655543

>KOG1550|consensus

Probab=94.55  E-value=1.1  Score=41.73  Aligned_cols=110  Identities=14%  Similarity=-0.049  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCC
Q psy6284         133 VYSKEQGNKLVK-----EGKWGEAIEKYNVAIQT-----YPHDAVFFANRALCFLKMK-----NYVSAEADCTASLKLDN  197 (270)
Q Consensus       133 ~~~~~~g~~~~~-----~g~~~~A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p  197 (270)
                      ......|..++.     .+|.+.|+.+|..+.+.     .-.++.+.+.+|.||.+-.     +++.|+..+.++-.+. 
T Consensus       245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-  323 (552)
T KOG1550|consen  245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-  323 (552)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence            334444555543     35777788777777661     1114556777777776632     5666777777666654 


Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         198 TYVKAYQRRAAARRSLN---HFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                       ++.+.+.+|.++..-.   ++..|.++|..|.+  -.+..+...++.|+..
T Consensus       324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYEL  372 (552)
T ss_pred             -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHh
Confidence             4556777777776544   56677777776664  3667777777777543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.47  E-value=0.18  Score=42.09  Aligned_cols=62  Identities=21%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         185 AEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       185 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      |..+|.+|+.+.|++..+|+.+|.+....|+.-.|+-+|-+++...--.+.|..+|..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999998877779999999999888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1585|consensus

Probab=94.44  E-value=1.2  Score=36.41  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH----hcC--CCCHHHHHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASL----KLD--NTYVKAYQR  205 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~--p~~~~a~~~  205 (270)
                      ++-.....-+.++|+..|++++.+-..+      .+.+.-.+.++.++..|.+|-..+.+-.    ..+  ++-.+++..
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va  195 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA  195 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence            3333344455566666666665543222      2344445555666666666655554422    112  223334444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         206 RAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      .-.++....+|..|..+|+.+.++
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhcC
Confidence            444455555666776666666554

>KOG0530|consensus

Probab=94.33  E-value=0.39  Score=39.60  Aligned_cols=112  Identities=16%  Similarity=0.080  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q psy6284         135 SKEQGNKLVKEGKWG-EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS-  212 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~-~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-  212 (270)
                      |-.+-...-..|++. .-+......|..+..+..+|..+-.|....+.++.=+..+.+.|+.|--|-.||..+-.+... 
T Consensus       115 WHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~  194 (318)
T KOG0530|consen  115 WHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT  194 (318)
T ss_pred             HHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec
Confidence            333444444455555 556666666666666667777777777777777777777777777666555565554333322 


Q ss_pred             cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         213 LN-----HFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       213 ~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      .|     ..+.-+....+.|.+.|+|..+|+.|.-++..
T Consensus       195 ~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  195 KGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             cCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            12     23455666777888889999999999988876

>KOG4814|consensus

Probab=94.33  E-value=0.26  Score=45.49  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      .++.|-|.-+++..+|..++++|...+..-|.      ..+....++.||..+.+.+.|.+.++.|=+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            36778888899999999999999999987663      467888899999999999999999999999999998777776


Q ss_pred             HHHHHHhCCCCCcch
Q psy6284         241 AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~  255 (270)
                      ..+-..-++..+|+-
T Consensus       435 ~~~~~~E~~Se~AL~  449 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALT  449 (872)
T ss_pred             HHHHHHhcchHHHHH
Confidence            666655566555543

>KOG1550|consensus

Probab=94.18  E-value=1.8  Score=40.32  Aligned_cols=106  Identities=15%  Similarity=0.016  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         135 SKEQGNKLVKEG-----KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK---NYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       135 ~~~~g~~~~~~g-----~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      ....|..|.+..     ++..|+.+|.++-+.  .++.+.+.+|.|+..-.   ++..|..+|..|...  .+..|.+++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l  366 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL  366 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence            445778877743     789999999998776  56677888999987765   578899999877754  578899999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         207 AAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       207 g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      |.+|..    .-+.+.|..+|.++.+.+  ++.|...++..+.-
T Consensus       367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~  408 (552)
T KOG1550|consen  367 ALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY  408 (552)
T ss_pred             HHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence            999864    248899999999999887  66666666666543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.17  E-value=0.35  Score=39.02  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284         130 ASAVYSKEQGNKLVKEGK-------WGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLKLD  196 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~-------~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  196 (270)
                      ..|..+...+..+-..|+       +..|+..|.++++....      ...+.+.+|.+..++|++++|+.+|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            345556666777666666       55666666666654322      25689999999999999999999999999765


Q ss_pred             CCCH-HHHHHHH
Q psy6284         197 NTYV-KAYQRRA  207 (270)
Q Consensus       197 p~~~-~a~~~~g  207 (270)
                      ..+. .....+|
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            4333 3444444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.14  E-value=1.3  Score=37.09  Aligned_cols=65  Identities=12%  Similarity=-0.047  Sum_probs=58.6

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      ....++..++..+...++++.++..+++.+..+|.+..+|.++=.+|...|+...|+..|.+.-+
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999988766

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.03  E-value=0.11  Score=29.26  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLD  196 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  196 (270)
                      .+|..+|.+-+...+|++|+.+|.+++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467778888888888888888888888753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.83  E-value=2.4  Score=35.68  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----CCC----------HHHHHHHHHHHHHccCHHHHHH---HHHHHH
Q psy6284         132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTY----PHD----------AVFFANRALCFLKMKNYVSAEA---DCTASL  193 (270)
Q Consensus       132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~----p~~----------~~~~~~~a~~~~~~~~~~~A~~---~~~~al  193 (270)
                      +..+++-|...++.+ +++.|+..+++++++.    +..          ..++..++.+|+..+.++....   ..+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            455666666666666 7777776666666652    110          2355556666666655443222   222222


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284         194 KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE  230 (270)
Q Consensus       194 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~  230 (270)
                      ...|+.+..++..=.+....++.+++.+.+.+.+.--
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            3335555555333333434566666666666666543

It is also involved in sporulation [].

>KOG2047|consensus

Probab=93.73  E-value=2.6  Score=39.28  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-----YVKAYQR  205 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~  205 (270)
                      +...|..-+...-.-|-++..-..|++.|++.--.|..-.|.|..+....-|+++...|++.+.+-+.     -...|+.
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt  555 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT  555 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence            34445555666667788888899999999999889999999999999999999999999999998752     2335666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .....+.--..+.|...|++||+..|..  ..++...+.+..+.|-...++.
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ams  607 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMS  607 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6666677778999999999999998833  2444555555555555444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.67  E-value=2.9  Score=33.08  Aligned_cols=87  Identities=14%  Similarity=-0.034  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT-Y--VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-KQAEIELAE  242 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~  242 (270)
                      .+-+.+|-.+...+++++|+..++.++....+ +  .-+-.|+|.+...+|.+++|+..+...-  +++. +......+.
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhh
Confidence            35566788888999999999999999865443 2  3467889999999999999998876432  1221 233566788


Q ss_pred             HHHHhCCCCCcch
Q psy6284         243 LNRKLNIPLSPIK  255 (270)
Q Consensus       243 ~~~~~~~~~~a~~  255 (270)
                      ++...|+..++..
T Consensus       168 ill~kg~k~~Ar~  180 (207)
T COG2976         168 ILLAKGDKQEARA  180 (207)
T ss_pred             HHHHcCchHHHHH
Confidence            8888888877755

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.67  E-value=0.1  Score=26.61  Aligned_cols=23  Identities=17%  Similarity=0.003  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         202 AYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      +.+.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.64  E-value=2.1  Score=37.52  Aligned_cols=83  Identities=14%  Similarity=0.029  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKL----DNTYVKAYQRRAAARRS---LNHFEDARKDILK-VLALEPNNKQA  236 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a  236 (270)
                      +++...++-++|...++|+.-+...+..-.+    -+......+.+|.++-+   .|+.++|+..+.. ....++.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3567778889999999999999988887776    45667778888999988   9999999999999 56667789999


Q ss_pred             HHHHHHHHHHh
Q psy6284         237 EIELAELNRKL  247 (270)
Q Consensus       237 ~~~l~~~~~~~  247 (270)
                      +..+|.++..+
T Consensus       220 ~gL~GRIyKD~  230 (374)
T PF13281_consen  220 LGLLGRIYKDL  230 (374)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>KOG3617|consensus

Probab=93.34  E-value=1.4  Score=42.20  Aligned_cols=90  Identities=17%  Similarity=0.057  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTAS----------LKLDN----------TYVKAYQRRAAARRSLNHFEDARKDILK  225 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~  225 (270)
                      -..|++.|.-+...++.+.|+++|+++          +.-+|          .+...|-..|+-+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            357899999888999999999999874          23344          2345666678888899999999998875


Q ss_pred             H---------------------HhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         226 V---------------------LALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       226 a---------------------l~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |                     |.....|..|-++|+..+...|+..+|+.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence            4                     33446788999999999988888877766

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.21  E-value=0.29  Score=36.63  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .-......++...+..|++..|.+....++..+|+|..++..++.++..+|...++..
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~  125 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENAN  125 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHH
Confidence            3445666677778888888888888888888888888888888888888776655433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.21  E-value=0.55  Score=27.43  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=19.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      +.+|.+|..+|+.+.|++.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2300|consensus

Probab=93.10  E-value=4.8  Score=36.34  Aligned_cols=121  Identities=12%  Similarity=0.024  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCC-------
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLK-LDNTY-------  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~-------  199 (270)
                      .+....-.|.....-+.|+.|...|..|++.....   ..+-.|+|..|+..++-+.    +.++++ +.|.|       
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHH
Confidence            34455556777778899999999999999875432   4567789999999887554    333332 34432       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 ---VKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                         ..++|..|...+..+++.+|...+.+.++....      .......|+.+-.-+|+..++..
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n  506 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN  506 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence               347888899999999999999999999987521      12344455666666787776655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.94  E-value=1.8  Score=37.88  Aligned_cols=100  Identities=17%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----CCHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-DAV-FFANRALCFLKMKNYVSAEADCTASLKLDN-----TYVKAYQRR  206 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~~  206 (270)
                      .++.....+.++|-+..|++..+-.+.++|. |+. +.+.+=...++.++|+=-+..++.......     .-+..-|..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4566677888999999999999999999999 654 344444455667888877777776555211     133567888


Q ss_pred             HHHHHHcCCH---------------HHHHHHHHHHHhhCCCC
Q psy6284         207 AAARRSLNHF---------------EDARKDILKVLALEPNN  233 (270)
Q Consensus       207 g~~~~~~g~~---------------~~A~~~~~~al~~~p~~  233 (270)
                      +.+++.+++-               ++|...+.+|+..-|.-
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            9999999998               89999999999887643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2422|consensus

Probab=92.92  E-value=1.9  Score=39.55  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             cCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------
Q psy6284         145 EGKWGEAIEKYNVAIQT------------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----------------  195 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------  195 (270)
                      ...|++|...|.-+...            .|.+...++.+|.+...+|+.+-|....+++|-.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45688888888887764            3566788999999999999999888888777732                 


Q ss_pred             ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy6284         196 ----DNTYV---KAYQRRAAARRSLNHFEDARKDILKVLALEPN-NKQAEIELAELN  244 (270)
Q Consensus       196 ----~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~  244 (270)
                          .|.|.   .+.|+.=..+.+.|++..|.+.++-.+.++|. |+-+...+..++
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~  387 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY  387 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence                12222   35555566677899999999999999999998 876655555554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.80  E-value=2.7  Score=36.21  Aligned_cols=83  Identities=11%  Similarity=-0.027  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHH
Q psy6284         148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR---SLNHFEDARKDIL  224 (270)
Q Consensus       148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~---~~g~~~~A~~~~~  224 (270)
                      .+..+..|++||+.+|++..++..+-.+..+.-+.++...-+++++..+|++...|..+-....   ..-.+.+.+..|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            4677889999999999999988888888888899999999999999999999887765443332   2346778888888


Q ss_pred             HHHhhC
Q psy6284         225 KVLALE  230 (270)
Q Consensus       225 ~al~~~  230 (270)
                      +||+.-
T Consensus       127 ~~l~~L  132 (321)
T PF08424_consen  127 KCLRAL  132 (321)
T ss_pred             HHHHHH
Confidence            887653

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.48  E-value=0.52  Score=26.21  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=9.1

Q ss_pred             HHHHHHHHHcCCHHHHHHH
Q psy6284         136 KEQGNKLVKEGKWGEAIEK  154 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~  154 (270)
                      ...|..++.+|+|++|+..
T Consensus         5 y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHH
Confidence            3444555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.41  E-value=0.51  Score=35.31  Aligned_cols=53  Identities=13%  Similarity=0.044  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV  183 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~  183 (270)
                      -+......+...+..|+|..|....+.++..+|++..+...++.++..++.-.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            35567888999999999999999999999999999999999998887776543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.37  E-value=0.22  Score=25.31  Aligned_cols=24  Identities=17%  Similarity=-0.148  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCT  190 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~  190 (270)
                      .+.+++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356677777777777777777654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.26  E-value=4.4  Score=31.53  Aligned_cols=111  Identities=9%  Similarity=0.054  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASL-KLDNTYVKAYQRRAA  208 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~~g~  208 (270)
                      .....|......|+...|+..|..+-.-.|.-    -.+.+.-|.++...|.|+....-.+..- .-+|-...+.-.+|.
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl  175 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL  175 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence            45667899999999999999999976544321    2466777788888899988665444322 233445567778899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      +-++.|++.+|.+.|.+... |-.-+..-.+.+.+..
T Consensus       176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            99999999999999998876 5555555555555443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.23  E-value=1.3  Score=29.23  Aligned_cols=31  Identities=32%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .|..+..++..+=+.|++.+|+.+|+++++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4556777888889999999999999888764

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2047|consensus

Probab=92.04  E-value=4.2  Score=37.98  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=8.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAI  159 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al  159 (270)
                      |..|-..|+.+.|...|++++
T Consensus       394 aklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhh
Confidence            333333444444444444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.63  E-value=7.3  Score=32.71  Aligned_cols=100  Identities=11%  Similarity=-0.090  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284         135 SKEQGNKLVKE-----G--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       135 ~~~~g~~~~~~-----g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      ....|..+..-     -  +...|+..|.++-...  ++.+.+++|.+|..    ..++.+|+.+|.++.....  ..+.
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~  226 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC  226 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence            44555554443     1  3347888898887765  88899999988865    4589999999999999887  8899


Q ss_pred             HHHHHHHHHcC---------------CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         204 QRRAAARRSLN---------------HFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       204 ~~~g~~~~~~g---------------~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      +.++ +++..|               +...|...+.++....+........
T Consensus       227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (292)
T COG0790         227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR  276 (292)
T ss_pred             HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            9999 666555               8888899998888776655444333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.55  E-value=1.6  Score=36.66  Aligned_cols=64  Identities=16%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL  195 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  195 (270)
                      ...+...+..+...|+++.++..+++.+..+|.+-.+|..+-..|+..|+...|+..|++.-..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3456778888999999999999999999999999999999999999999999999999887664

>KOG3617|consensus

Probab=91.46  E-value=2  Score=41.21  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH----------hhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAI----------QTYPH----------DAVFFANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al----------~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      .+++.+..+-.++|.+.|+++|+++-          ..+|.          ++.+|.--|..+-..|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            45566677777889999999998752          22332          34455556777777888888888887764


Q ss_pred             hc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         194 KL---------------------DNTYVKAYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       194 ~~---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      ..                     ...+..|.|-+|..|...|++.+|+..|.+|-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            32                     346778999999999999999999998887643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.45  E-value=8.1  Score=34.07  Aligned_cols=126  Identities=16%  Similarity=0.002  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQR  205 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~  205 (270)
                      .++...-...|....-.||=..|.++-.++-.+-..+  +.++..-+.+-+--|+++.|..-|+-.+. +|... -.+..
T Consensus        81 RdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRg  159 (531)
T COG3898          81 RDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRG  159 (531)
T ss_pred             hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHH
Confidence            3455566677888888899999999988887654444  55677778888889999999999986663 44322 23333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +-..-..+|..+.|+.+-+.+...-|.-+-++...-...+.-|+-..+++
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence            33344579999999999999999999999999988888888898877776

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.36  E-value=1.2  Score=39.41  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYP---------HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR  205 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  205 (270)
                      +.-....+.-.|||..|++...- |+++.         -....+|..|.||+.+++|.+|+..|..++-.-......+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            33455666788999999988654 33332         235689999999999999999999999988432211111111


Q ss_pred             HH-HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q psy6284         206 RA-AARRSLNHFEDARKDILKVLALEPN--NKQAEIELAE  242 (270)
Q Consensus       206 ~g-~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~  242 (270)
                      .. +--.-....|+....+--|+.+.|.  +..+...+.+
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke  243 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE  243 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            11 1112234566677777778888885  4444444433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.27  E-value=0.63  Score=39.00  Aligned_cols=55  Identities=24%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.+...+..|...|.+.+|++..++++++||=+.+.+..+..++..+|+..++++
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k  334 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK  334 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence            3455567788899999999999999999999999999999999999999877766

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=91.03  E-value=2.1  Score=36.66  Aligned_cols=97  Identities=22%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      +|..-...|.-...+. .++.+-.|++.+.-+..-...++...+....-  =..+.-.|-.+|..+.++|+.++|...|.
T Consensus       311 DW~~I~aLYdaL~~~a-pSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAA-PSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhC-CCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            4554444554444333 34567788998888777788888777655543  23566678889999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHH
Q psy6284         225 KVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       225 ~al~~~p~~~~a~~~l~~~~  244 (270)
                      +++.+.++..+....+..+-
T Consensus       390 rAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         390 RAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             HHHHhcCChHHHHHHHHHHH
Confidence            99999999888877766553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.80  E-value=8.9  Score=32.20  Aligned_cols=17  Identities=6%  Similarity=-0.193  Sum_probs=8.6

Q ss_pred             ccCHHHHHHHHHHHHhc
Q psy6284         179 MKNYVSAEADCTASLKL  195 (270)
Q Consensus       179 ~~~~~~A~~~~~~al~~  195 (270)
                      .++.+++.+.+.+.+..
T Consensus       134 ~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  134 SFDEEEYEEILMRMIRS  150 (278)
T ss_pred             cCChhHHHHHHHHHHHh
Confidence            45555555555555543

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.74  E-value=2.2  Score=30.41  Aligned_cols=73  Identities=12%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy6284         172 RALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAARRSLNH-----------FEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       172 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~  237 (270)
                      +|.-++..|++-+|++..+..+...+++.   -.+..-|.++..+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999998887655   445555777755442           4568999999999999997777


Q ss_pred             HHHHHHH
Q psy6284         238 IELAELN  244 (270)
Q Consensus       238 ~~l~~~~  244 (270)
                      ..++.-+
T Consensus        82 ~~la~~l   88 (111)
T PF04781_consen   82 FELASQL   88 (111)
T ss_pred             HHHHHHh
Confidence            7776553

>KOG2396|consensus

Probab=90.69  E-value=2.8  Score=37.90  Aligned_cols=71  Identities=14%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQR  205 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~  205 (270)
                      |.+-....-+.+.+.+--..|.+++...|+++++|..-|.-.+..+. .+.|...+.++|..+|++++.|..
T Consensus       108 W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  108 WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            44444444455668888899999999999999999999987777776 899999999999999999876543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.58  E-value=8.5  Score=34.02  Aligned_cols=62  Identities=11%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH--ccCHHHHHHHHHHHHh
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA--VFFANRALCFLK--MKNYVSAEADCTASLK  194 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~--~~~~~~a~~~~~--~~~~~~A~~~~~~al~  194 (270)
                      ......+..+|+.++|..|...+...+..-|...  ..+..++.+|..  .-++.+|...+++.+.
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4566778899999999999999999988644443  356666655544  5678888888887664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.47  E-value=1.3  Score=37.14  Aligned_cols=59  Identities=17%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV  226 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  226 (270)
                      .+.-.|..|+..|.+.+|++.+++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34445677888999999999999999999999999999999999999988888888764

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.35  E-value=1.1  Score=28.94  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..|..+...|..+=+.|+|++|+.+|.++++.
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45667788899999999999999999999874

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.32  E-value=2.4  Score=35.04  Aligned_cols=53  Identities=11%  Similarity=0.208  Sum_probs=24.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADC  189 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~  189 (270)
                      +.|..++..|+|++|+.+|+.+......+      ..+...+..|...+|+.+..+..+
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~  241 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS  241 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            45555555555555555555554332111      234444445555555555444444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.04  E-value=3.4  Score=27.45  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR---RAAARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~---~g~~~~~~g~~~~A~~~~~~al  227 (270)
                      ....|+-++..++.++|+..+++++.-.++....+..   +..+|...|+|+++++.-.+=+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666778889999999999999888776655444   4566788999998887654443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.61  E-value=0.65  Score=41.05  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASL--------KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      +...+..++.-+|||..|+...+..=        ..-+.+...+|..|.+|..+++|.+|++.|..+|-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677788999999998765421        11235677899999999999999999999998864

>KOG0686|consensus

Probab=89.59  E-value=3.5  Score=36.28  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLD--------NTYVKA  202 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a  202 (270)
                      .+.+.|.-|...|+++.|++.|.++-+++-..   ...+.|.-.+-..+++|........++...-        .-.++.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            45677999999999999999999977765443   4567777778888999988888777777651        123456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHH
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLA--------LEPNNKQAEIELAE  242 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~l~~  242 (270)
                      ....|.+.+.+++|..|.++|-.+.-        +.|.|..++..|-.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA  279 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA  279 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence            77788999999999999998865532        23556666655543

>KOG2300|consensus

Probab=89.54  E-value=12  Score=34.03  Aligned_cols=91  Identities=15%  Similarity=-0.003  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCC---
Q psy6284         132 AVYSKEQGNKLV-KEGKWGEAIEKYNVAIQTY---PHD----AVFFANRALCFLKMK-NYVSAEADCTASLKLDNTY---  199 (270)
Q Consensus       132 a~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~---p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~---  199 (270)
                      |....+.|..++ -..+++.|..++++|..+.   |.+    ..++..++.||.... .+..|...+++++++....   
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w  125 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW  125 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence            344444554443 3556666666666666542   222    235556666666655 5666666666666665433   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         200 -VKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       200 -~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                       -+..+.++..+.-..++..|++.
T Consensus       126 sckllfQLaql~~idkD~~sA~el  149 (629)
T KOG2300|consen  126 SCKLLFQLAQLHIIDKDFPSALEL  149 (629)
T ss_pred             hHHHHHHHHHHHhhhccchhHHHH
Confidence             24455566666666666666665

>KOG1258|consensus

Probab=89.09  E-value=19  Score=33.39  Aligned_cols=119  Identities=10%  Similarity=0.013  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~  213 (270)
                      |..-...-...|++......|++++--+......|.+.+.-....|+.+-|-..+.++.++ .|..+..+..-+..--..
T Consensus       300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN  379 (577)
T ss_pred             HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence            4444455567899999999999999888888889999988888888888888777777765 466777777778778888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      |++..|...++++..--|+...+-..-.....+.|+..-+
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~  419 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA  419 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence            9999999999999887788887777777777777765444

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.77  E-value=11  Score=33.58  Aligned_cols=126  Identities=21%  Similarity=0.200  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HH--------HHHHHHHH-HHccC-----HHHH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA--------VF--------FANRALCF-LKMKN-----YVSA  185 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~--------~~--------~~~~a~~~-~~~~~-----~~~A  185 (270)
                      .+.......+.|..++..|+|.+|+..|+.+|-.-|-..        .+        -|-+|+-. +..+.     .++.
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            344444566789999999999999999999987633211        11        22233221 11111     2222


Q ss_pred             HHHHHH-----HHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         186 EADCTA-----SLKLDNTYVKAYQRRAAAR-RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       186 ~~~~~~-----al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      ...++-     ...+.|.+...-++.|+.. ++.++|..|-...++.|+++|....+......+..--.+...+
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa  353 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDA  353 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BS
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            222222     2245566655566666664 5799999999999999999999876655444444333343333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG0546|consensus

Probab=88.73  E-value=0.39  Score=41.15  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      ..+.+..-++.+.+..|+..-..+++.++....+++.++..+..+.++++|+++...+....|++....-.+..+-....
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            34466777888999999988888888888899999999999999999999999999999999998876666555544443


Q ss_pred             C
Q psy6284         215 H  215 (270)
Q Consensus       215 ~  215 (270)
                      +
T Consensus       358 ~  358 (372)
T KOG0546|consen  358 Q  358 (372)
T ss_pred             H
Confidence            3

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.73  E-value=1.4  Score=22.89  Aligned_cols=30  Identities=27%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      |+++.|...|++++...|.+...|......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456667777777777777777776665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.68  E-value=3.3  Score=33.42  Aligned_cols=60  Identities=15%  Similarity=0.049  Sum_probs=37.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284         140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  199 (270)
                      ..+.+.+...+||.....-++.+|.+......+=.++.-.|++++|..-|+-+-.+.|++
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            355666666666666666666666665555555555555666666666666666666654

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=88.55  E-value=13  Score=31.30  Aligned_cols=112  Identities=16%  Similarity=0.084  Sum_probs=72.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH---HHccCH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCF---LKMKNY----VSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ...++..++|++=-..|.+......+  ..+..|..+...   +.+...    ..-.+.++.=+...|++.-+++.+|..
T Consensus         7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~   86 (277)
T PF13226_consen    7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY   86 (277)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45667778888877777776643222  111112222221   112111    134555566667888888888887777


Q ss_pred             HHHcC----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         210 RRSLN----------------------HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       210 ~~~~g----------------------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +....                      ..+.|..++.+++.++|....+...+..+-..+|.+
T Consensus        87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP  149 (277)
T PF13226_consen   87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP  149 (277)
T ss_pred             HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence            65432                      267799999999999999999999999888777765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.01  E-value=3.5  Score=32.15  Aligned_cols=89  Identities=10%  Similarity=-0.017  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH-
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALE--PNNKQAEIEL-  240 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l-  240 (270)
                      .++..+|..|.+.|++++|+.+|.++......   -...++++-.+....+++......+.++-.+-  +++......+ 
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            57889999999999999999999998876532   34577888888899999999999999886653  3344333322 


Q ss_pred             ---HHHHHHhCCCCCcch
Q psy6284         241 ---AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ---~~~~~~~~~~~~a~~  255 (270)
                         +......+++..+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~  134 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAE  134 (177)
T ss_pred             HHHHHHHHHhchHHHHHH
Confidence               222334466666555

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.85  E-value=1.7  Score=28.78  Aligned_cols=31  Identities=29%  Similarity=0.288  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .|..+..++..+=+.|+|++|+.+|..+++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3556777888999999999999999999975

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.79  E-value=1.8  Score=38.22  Aligned_cols=77  Identities=12%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             ccCHHHHHHHHHHHHhcCC-CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         179 MKNYVSAEADCTASLKLDN-TY----------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       179 ~~~~~~A~~~~~~al~~~p-~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      .|+|..|++.|.+...+.. ..          +..--.+..||..+++.+-|+..-.++|-+||....-....+.|.+.+
T Consensus       196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L  275 (569)
T PF15015_consen  196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL  275 (569)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence            4455555555555544332 11          112345788999999999999999999999999999999999999999


Q ss_pred             CCCCCcch
Q psy6284         248 NIPLSPIK  255 (270)
Q Consensus       248 ~~~~~a~~  255 (270)
                      ..+.+|.+
T Consensus       276 eRy~eAar  283 (569)
T PF15015_consen  276 ERYSEAAR  283 (569)
T ss_pred             HHHHHHHH
Confidence            99888876

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.30  E-value=1.4  Score=37.47  Aligned_cols=72  Identities=13%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFAN-RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR  205 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~  205 (270)
                      .|.+-++-.-+.|-|.+--..|.+++...|.++++|.. -+.=+...++++.+...+.+++.++|.++..|+.
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            34444555556677888888999999999999999887 3455667899999999999999999999876653

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.29  E-value=1.7  Score=28.86  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .+..+..+|..+=+.|+|++|+.+|.++|+.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456777888889999999999999988874

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.09  E-value=2.1  Score=22.21  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRA  173 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a  173 (270)
                      |+++.|...|++++...|.++.+|...+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            4566667777777777776666666554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.76  E-value=29  Score=32.85  Aligned_cols=114  Identities=11%  Similarity=-0.026  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----
Q psy6284         130 ASAVYSKEQGNKLV-KEGKWGEAIEKYNVAIQTYPHD--A----VFFANRALCFLKMKNYVSAEADCTASLKLDNT----  198 (270)
Q Consensus       130 ~~a~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~p~~--~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----  198 (270)
                      ..+...++.|..++ ...+++.|..++.+++.+...+  .    .+-+.++.++.+.+... |...+++++.....    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            34566778888888 6789999999999999886432  2    24455677777766666 99999999976544    


Q ss_pred             CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Q psy6284         199 YVKAYQRRAAA--RRSLNHFEDARKDILKVLALE--PNNKQAEIELAELN  244 (270)
Q Consensus       199 ~~~a~~~~g~~--~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~  244 (270)
                      ...-.|++-.+  +...+++..|++.++....+.  +.++.+........
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~  185 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE  185 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence            33334444322  223379999999999998876  57776665544443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0985|consensus

Probab=86.40  E-value=7.1  Score=38.63  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------------
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----------------  198 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------  198 (270)
                      ....|..+|..|.|+.|--+|...        .-|..+|..+..+|+|+.|....++|-...-.                
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence            446799999999999998888543        45888999999999999999988876543210                


Q ss_pred             ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         199 ---------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       199 ---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                               +..-+-.+-.-|...|-|++-+..++.+|-++..+--....|+.++.+-
T Consensus      1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence                     0111223445577889999999999999999999999999999998764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.39  E-value=4.7  Score=32.04  Aligned_cols=55  Identities=18%  Similarity=0.063  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhCCCCCc
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN----NKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      +.+...+.+|..|. ..+.++|+..+.++|++.+.    |+++...|+.++..+|++..|
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            45566666665443 55677777777777776544    367777777777777776554

>KOG1914|consensus

Probab=86.21  E-value=5.6  Score=36.39  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL  193 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  193 (270)
                      .+++....|++.+...|..+.+|..-...-+..++|+.....|.+||
T Consensus        34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            66666666666666666666666655555556666666666666655

>KOG2581|consensus

Probab=86.17  E-value=14  Score=32.62  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLK--LDN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~  234 (270)
                      .+.+.+-.+|+..+.|+.|.....++.-  ...  ......|.+|.+..-+++|..|.++|-+|+...|++.
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            4555566788888999999887777652  122  3455678899999999999999999999999999843

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=86.14  E-value=6.5  Score=27.86  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN  181 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~  181 (270)
                      +...+......|...+-.|||..|.+...++-+..+.....|..-|.+-..+||
T Consensus        55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            445677788889999999999999999999976655555555555555444443

These are membrane protein involved in a late step of protoheme IX synthesis [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.83  E-value=21  Score=33.76  Aligned_cols=92  Identities=12%  Similarity=0.051  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------------------HHHHHHHHHHHHHccCHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-------PHD-------------------AVFFANRALCFLKMKNYVSAE  186 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-------p~~-------------------~~~~~~~a~~~~~~~~~~~A~  186 (270)
                      ..+.--|......+..+.|.+++.++++.-       +..                   ..+.+..+.+.+-++++..|.
T Consensus       302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~  381 (608)
T PF10345_consen  302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT  381 (608)
T ss_pred             HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            345556888888888878888888888641       111                   135677888888899999999


Q ss_pred             HHHHHHHhcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         187 ADCTASLKLD---N------TYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       187 ~~~~~al~~~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      .....+....   |      ..+..+|..|..+...|+.+.|...|.
T Consensus       382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            8888777553   2      247789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.73  E-value=2.7  Score=27.64  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..+..+..+|...=..|+|++|+.+|..+++.
T Consensus         4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678           4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45667788888889999999999999998874

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1839|consensus

Probab=84.54  E-value=3.1  Score=41.71  Aligned_cols=126  Identities=21%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIE------KYNVAI-QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD------  196 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~------~y~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------  196 (270)
                      ..+....+.|......+.+.+|.+      .+.... .+.|..+..|..++..+.+++++++|+..+.++..+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            346667788888888899998887      444222 2467778899999999999999999999998887653      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         197 --NTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       197 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                        |+....+-+++...+..++...|+..+.+++.+        .|.-.....+++.++.-++.+.-+++
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence              345667888888888899999999999988775        34444555666666555555544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.47  E-value=2.2  Score=24.91  Aligned_cols=26  Identities=12%  Similarity=0.123  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      .+++|.+|..+|+++.|...+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            46899999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.44  E-value=2.6  Score=27.79  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .+..+..+|...=..|+|++|+..|..+++.
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            4556777788888889999999999999985

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=83.92  E-value=3.6  Score=26.99  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..|..+..+|..+=..|++++|+.+|..+++.
T Consensus         6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745        6 SKAKELISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556777788888889999999999888874

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=83.88  E-value=25  Score=31.01  Aligned_cols=56  Identities=5%  Similarity=-0.085  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----DAVFFANRALCFLK--MKNYVSAEADCT  190 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~~~~~~~~a~~~~~--~~~~~~A~~~~~  190 (270)
                      ....+..+|+.++|..|...|..++...+.     ....+..++.+|..  .=++++|...++
T Consensus       133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~  195 (380)
T TIGR02710       133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN  195 (380)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            344677899999999999999999987542     24566777777655  557788888887

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.82  E-value=14  Score=26.87  Aligned_cols=96  Identities=18%  Similarity=0.058  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C----------HHHHHHHHHHHHHccCHHHHHHHHH----HHHhc
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----D----------AVFFANRALCFLKMKNYVSAEADCT----ASLKL  195 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~----------~~~~~~~a~~~~~~~~~~~A~~~~~----~al~~  195 (270)
                      ....|+..++.+++-.++-+|++|+.+..+     .          +...-|+|..+..+|+.+=.+.+++    +++.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            445689999999999999999999986321     1          3467889999999999887777664    55667


Q ss_pred             CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         196 DNTYVKAYQRRAAA-RRSLNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       196 ~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                      -|..+....   .+ --.+|.-..|+-+|   ++..|+-.-|
T Consensus        84 iPQCp~~~C---~afi~sLGCCk~ALl~F---~KRHPNP~iA  119 (140)
T PF10952_consen   84 IPQCPNTEC---EAFIDSLGCCKKALLDF---MKRHPNPEIA  119 (140)
T ss_pred             ccCCCCcch---HHHHHhhhccHHHHHHH---HHhCCCHHHH
Confidence            675433211   11 12456666676665   5677764433

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.70  E-value=2.7  Score=27.69  Aligned_cols=32  Identities=25%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..|..+..+|...=..|+|++|+.+|..+|+.
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~   35 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY   35 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566777888888999999999999998874

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.70  E-value=4.5  Score=32.14  Aligned_cols=70  Identities=17%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy6284         149 GEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRRAAARRSLNHFEDAR  220 (270)
Q Consensus       149 ~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~  220 (270)
                      ++|...|-++- -.|  +++...+.+|..|. ..+.++|+..+.+++++.+.    ++..+..++.++..+|+++.|.
T Consensus       123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            67777775542 233  46788888887664 77889999999999987543    5889999999999999999885

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=83.58  E-value=3.1  Score=33.87  Aligned_cols=107  Identities=17%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC---CCC---------HHHHHHHHHHHHHccCH-HHH-HHHHHHHHh--cCCCCHHH--
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTY---PHD---------AVFFANRALCFLKMKNY-VSA-EADCTASLK--LDNTYVKA--  202 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~---p~~---------~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~--~~p~~~~a--  202 (270)
                      .+|..|+|+.|+....-||+.+   |+.         .+-...-+......|.. +-. ...+..+..  --|+-..|  
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            3478899999999999999874   332         12233333444445542 111 112222221  11343333  


Q ss_pred             HHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         203 YQRRAAARR---------SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       203 ~~~~g~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      |-..|.++.         ..++...|+..+++|+.+||. .-+...+..+...+.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr  225 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence            444566563         456888999999999999965 344444555555544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=82.44  E-value=8.5  Score=27.97  Aligned_cols=60  Identities=12%  Similarity=0.136  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQT-------YPHDA----VFFANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~-------~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      +--.+..+...|+|++++..-.++|.+       +.+..    .+-+++|.++-.+|+.++|+..|+.+-+
T Consensus        58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            334566777889999888777777754       44443    4667899999999999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.15  E-value=4.7  Score=26.35  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .+..+...|...=..|+|++|+.+|..+++.
T Consensus         5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~   35 (75)
T cd02656           5 QAKELIKQAVKEDEDGNYEEALELYKEALDY   35 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455667788888889999999999988874

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG2041|consensus

Probab=82.09  E-value=7.8  Score=36.72  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+.+.|..++....|++|.++|.++-.        .-+...|++++..|++    ++.+...-|++.+.+-.+|.++...
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~sv  865 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSV  865 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhh
Confidence            344555556666666666666654422        2234455555555544    2333344567777777777777777


Q ss_pred             CCHHHHHHHHHH
Q psy6284         214 NHFEDARKDILK  225 (270)
Q Consensus       214 g~~~~A~~~~~~  225 (270)
                      |--++|.+.|-+
T Consensus       866 GMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  866 GMCDQAVEAYLR  877 (1189)
T ss_pred             chHHHHHHHHHh
Confidence            777777776643

>PF12854 PPR_1: PPR repeat

Probab=81.85  E-value=4.9  Score=21.73  Aligned_cols=26  Identities=12%  Similarity=-0.000  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      +...|..+-..+++.|+.++|.+.|+
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34455666666667777777766665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=81.51  E-value=15  Score=36.50  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-----HFEDAR  220 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-----~~~~A~  220 (270)
                      ..+.+|+..|.+.- -.|.-|.-|...|++|..+++|++=+.++.-|++..|.++..-...-.+-+++.     +-..|+
T Consensus       533 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (932)
T PRK13184        533 RDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL  611 (932)
T ss_pred             HHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777877777643 356677889999999999999999999999999999988765443333332222     334566


Q ss_pred             HHHHHHHhhCCCCHHHHH
Q psy6284         221 KDILKVLALEPNNKQAEI  238 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~  238 (270)
                      ...--++..-|.......
T Consensus       612 ~~~~~~~~~~~~~~~~~~  629 (932)
T PRK13184        612 VFMLLALWIAPEKISSRE  629 (932)
T ss_pred             HHHHHHHHhCcccccchH
Confidence            777778888887665544

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.39  E-value=4.2  Score=26.79  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..|..+..+|...=..|+|++|+.+|..+|+.
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~   35 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34556777788888889999999999998874

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.82  E-value=4.6  Score=36.49  Aligned_cols=98  Identities=12%  Similarity=0.115  Sum_probs=71.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE  217 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  217 (270)
                      .+...-..|+|+.|......+-..-.....+.-.+-.-..+++++++|.....-.+...-..++...-.|.....+|-++
T Consensus       329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence            34555667888888777655544433333334344455568999999999888888777677777777777778889999


Q ss_pred             HHHHHHHHHHhhCCCCHH
Q psy6284         218 DARKDILKVLALEPNNKQ  235 (270)
Q Consensus       218 ~A~~~~~~al~~~p~~~~  235 (270)
                      +|.-.+++++.++|....
T Consensus       409 ~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        409 KSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHHHHhccCChhcc
Confidence            999999999999986443

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=80.60  E-value=6.5  Score=20.63  Aligned_cols=28  Identities=25%  Similarity=0.058  Sum_probs=17.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         220 RKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      ++....++..+|.|-.+|..+..+...+
T Consensus         3 l~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    3 LEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            4455666666777777776666665543

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>KOG1839|consensus

Probab=80.27  E-value=7.6  Score=39.16  Aligned_cols=101  Identities=19%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL------  195 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------  195 (270)
                      +.+..+...+..+.+.|++++|+..-.++.-+.        |+....|.+++...+..+....|+..+.++..+      
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence            456677888999999999999999887776542        445678999999999999999999999888865      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284         196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE  230 (270)
Q Consensus       196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~  230 (270)
                        .|.-.....+++.++..+++++.|+...+.|++.+
T Consensus      1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence              34445566788888999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
2ftc_H	148	Structural Model For The Large Subunit Of The Mamma		1e-27
1wao_1	477	Pp5 Structure Length = 477		3e-14
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		7e-14
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		1e-13
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-12
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-12
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-11
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-11
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-11
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		2e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-10
1p85_H	142	Real Space Refined Coordinates Of The 50s Subunit F		3e-10
2j28_J	140	Model Of E. Coli Srp Bound To 70s Rncs Length = 140		4e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-10
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-09
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		1e-09
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		5e-08
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-07
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-07
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		8e-07
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		2e-06
1pnu_H	143	Crystal Structure Of A Streptomycin Dependent Ribos		2e-06
1nkw_H	174	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-06
1vsa_H	163	Crystal Structure Of A 70s Ribosome-Trna Complex Re		4e-06
2j01_N	140	Structure Of The Thermus Thermophilus 70s Ribosome		4e-06
1vsp_H	140	Interactions And Dynamics Of The Shine-Dalgarno Hel		4e-06
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		4e-06
3fin_N	139	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-06
3mrz_J	139	Recognition Of The Amber Stop Codon By Release Fact		4e-06
3tve_M	138	Crystal Structure Analysis Of Ribosomal Decoding. T		5e-06
3pyo_J	137	Crystal Structure Of A Complex Containing Domain 3		5e-06
3bbo_L	250	Homology Model For The Spinach Chloroplast 50s Subu		2e-05
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-04

>pdb|2FTC|H Chain H, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 148

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1   MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
           MS++ R  +QW TFARIW++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct: 1   MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60
Query: 60  NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP 
Sbjct: 61  NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPV 101

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K Q N   K   +  AI+ Y+ AI+  P +A+++ NR+L +L+ + Y  A  D T +++L
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
           D  Y+K Y RRAA+  +L  F  A +D   V+ ++P++K A+++  E N+
Sbjct: 70  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K Q N   K   +  AI+ Y+ AI+  P +A+++ NR+L +L+ + Y  A  D T +++L
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
           D  Y+K Y RRAA+  +L  F  A +D   V+ ++P++K A+++  E N+
Sbjct: 77  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 60/101 (59%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GN+  K+G +  A+  YN A++  P +A+ ++NRA C  K+  +  A  DC   ++L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           D+ ++K Y R+AA   ++  +  A++     L ++P+N++A
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 61/105 (58%)
Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
           A+  K +GN+  ++G + +A++ Y  AI+  P DA  ++NRA C+ K+  +  A  DC  
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            ++L+ T++K Y R+AAA  ++  +  A     K L L+ + K+A
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GN+ +K   +  A+  Y  AI+  P +AV+F NRA  + K+ NY  A  DC  ++ +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK--QAEIELAEL 243
           D  Y KAY R   A  SLN   +A     K L L+P+N+  ++ +++AEL
Sbjct: 76  DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 136 KEQGNKLVKEGKWGEAIEKYN--VAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTAS 192
           +++GN+L K G +G A+  Y   + +   P D AV   NRA C LK+++Y  AE + + +
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 193 LKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
           ++ D   VKA  RR+ A   L   + A  D+ + ++LEP NK
Sbjct: 92  IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF---------------ANR 172
           ++  +   KE+G    KEGK+ +A+ +Y   +    +++ F                 N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
           A+C LK++ + +A   C  +L+LD+   K   RR  A  ++N FE AR D  KVL L PN
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 233 NKQAEIELAELNRKLNIPLS 252
           NK A+ +LA   +++   L+
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA 282

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANR 172
           ++  +   KE+G    KEGK+ +A+ +Y   +    +++ F                 N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
           A+C LK++ + +A   C  +L+LD+   K   RR  A  ++N FE AR D  KVL L PN
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 233 NKQAEIELAELNRKLNIPLS 252
           NK A+ +LA   +++   L+
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA 282

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 57/100 (57%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           KE+GNK +  G   +A++ Y+ AI+  PH+ V ++NR+  + K  +Y  A  D   ++ L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235
              + K Y R+AAA   LN FE+A++   + L  E NN Q
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
           SA   KEQGN+L    K+ EA   Y  AI   P  AV++ NRALC+LKM+    A ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229
            +L+LD   VKA+      +  +  +++A  ++ +  +L
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAI-----------------EKYNVAIQTYPHDAVFFA 170
           ++  A   KE+G    K GK+ +A+                 EK + A +++   A  F 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA--FL 321
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
           N A+C+LK++ Y  A   C  +L LD+   K   RR  A+  +N FE A+ D  KVL + 
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 231 PNNKQAEIELAELNRK 246
           P NK A ++++   +K
Sbjct: 382 PQNKAARLQISMCQKK 397

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 44/73 (60%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
           SA   KEQGN+L    K+ EA   Y  AI   P  AV++ NRALC+LKM+    A ADC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 191 ASLKLDNTYVKAY 203
            +L+LD   VKA+
Sbjct: 68  RALELDGQSVKAH 80

>pdb|1P85|H Chain H, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 142

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEW 71
          T  R W++ DA  +     A  +++ L+G+HK  Y P  D GD++IV+N+  +A+ G + 
Sbjct: 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKR 69
Query: 72 KKRAYFHHTGYPGGV 86
            + Y+HHTG+ GG+
Sbjct: 70 TDKVYYHHTGHIGGI 84

>pdb|2J28|J Chain J, Model Of E. Coli Srp Bound To 70s Rncs Length = 140

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEW 71
          T  R W++ DA  +     A  +++ L+G+HK  Y P  D GD++IV+N+  +A+ G + 
Sbjct: 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKR 69
Query: 72 KKRAYFHHTGYPGGV 86
            + Y+HHTG+ GG+
Sbjct: 70 TDKVYYHHTGHIGGI 84

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAI-----------------EKYNVAIQTYPHDAVFFA 170
           ++  A   KE+G    K GK+ +A+                 EK + A +++   A  F 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA--FL 321
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
           N A+C+LK++ Y  A   C  +L LD+   K   RR  A+  +N FE A+ D  KVL + 
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 231 PNNKQAEIEL 240
           P NK A +++
Sbjct: 382 PQNKAARLQI 391

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
           R A AV  K +GN       + EAI+ Y  AI+  P++ VF++N + C++   +      
Sbjct: 21  RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
             T +L++   + KA  RRA+A  SL +F DA  D L VL+L  +   A IE   L R L
Sbjct: 81  FTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLSLNGDFDGASIE-PMLERNL 138
Query: 248 N 248
           N
Sbjct: 139 N 139

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
           R A AV  K +GN       + EAI+ Y  AI+  P++ VF++N + C++   +      
Sbjct: 17  RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 76
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
             T +L++   + KA  RRA+A  SL +F DA  D L VL+L  +   A IE   L R L
Sbjct: 77  FTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLSLNGDFDGASIE-PMLERNL 134
Query: 248 N 248
           N
Sbjct: 135 N 135

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
           A+  K++GN+  +  K+ +AI+ YN A++    D VF++N + C++ + +        T 
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +L+L   Y K   RRA+A   L  F DA  D L VL+L  +   A IE   L R LN
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFD-LSVLSLNGDFNDASIE-PMLERNLN 119

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF-----------------FA 170
           RI +A   K  GN L KE K  EA+++Y +AI     D +F                   
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
           N A C +K+K Y  A   C   L  +    KA  RR  A+  L   + AR D  K     
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 231 PNNKQAEIELAEL 243
           P++K    EL  L
Sbjct: 295 PDDKAIRRELRAL 307

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + +AIE Y  A++  P++A  + N    + K  +Y  A      +L+LD  
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
             KA+ RR  A      ++ A +D  K L L+PNN +A+  L    +K
Sbjct: 76  NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQK 123

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           +G +   +  W  A++ Y   I+  P DA  ++NRA    K+ ++  A ADC  +++ D 
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69
Query: 198 TYVKAYQRRAAARRSLNHFEDARK--DILKVLALEPNNKQAEIELAEL 243
            +V+AY R+A A+ ++  +  A +  D  +    E NN  +  E+ +L
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           +G +   +  W  A++ Y   I+  P DA  ++NRA    K+ ++  A ADC  +++ D 
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Query: 198 TYVKAYQRRAAARRSLNHFEDARK--DILKVLALEPNNKQAEIELAEL 243
            +V+AY R+A A+ ++  +  A +  D  +    E NN  +  E+ +L
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----DAVFF-----------AN 171
           ++ SA   KE+GN+  K+ +  EAI KY  A+  + H     D +              N
Sbjct: 34  KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93
Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
            A C+ K K+Y  A    +  LK+D   VKA  +   A       E+A++++ K  +L P
Sbjct: 94  LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153
Query: 232 NN 233
           NN
Sbjct: 154 NN 155

>pdb|1PNU|H Chain H, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 143

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA        A +I+  ++G+H+P + P    GD V+V+N+  +AL G +   + Y
Sbjct: 13 WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVY 72
Query: 77 FHHTGYPGGVSWTLA 91
            +TGY GG+    A
Sbjct: 73 TRYTGYQGGLKTETA 87

>pdb|1NKW|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 174

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
           W + DA        A +I+  ++G+H+P + P    GD V+V+N+  +AL G +   + Y
Sbjct: 41  WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVY 100
Query: 77  FHHTGYPGGVSWTLAWQ 93
             +TGY GG+    A +
Sbjct: 101 TRYTGYQGGLKTETARE 117

>pdb|1VSA|H Chain H, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 163

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
           W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 36  WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 95
Query: 77  FHHTGYPGGV 86
             ++GYPGG+
Sbjct: 96  TRYSGYPGGL 105

>pdb|2J01|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 140

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 73 TRYSGYPGGL 82

>pdb|1VSP|H Chain H, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh Length = 140

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 73 TRYSGYPGGL 82

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           KEQGN L K+G + EA+  Y+  I   P + V ++N+A+  +K+  Y  A   C   L+ 
Sbjct: 8   KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Query: 196 DNT 198
            +T
Sbjct: 68  TST 70

>pdb|3FIN|N Chain N, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 139

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 73 TRYSGYPGGL 82

>pdb|3MRZ|J Chain J, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 139

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 12 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 71
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 72 TRYSGYPGGL 81

>pdb|3TVE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 138

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 73 TRYSGYPGGL 82

>pdb|3PYO|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
          W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++ Y
Sbjct: 12 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 71
Query: 77 FHHTGYPGGV 86
            ++GYPGG+
Sbjct: 72 TRYSGYPGGL 81

>pdb|3BBO|L Chain L, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 250

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
           W++ DA        A  I+ H++G++   Y P  D G  VIV+N+  +A+ G +  ++ Y
Sbjct: 114 WYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLY 173
Query: 77  FHHTGYPGGV 86
             H+G PGG+
Sbjct: 174 RRHSGRPGGL 183

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAI----------------QTYPHDAVFFANRALCFLKM 179
           K  GN   K   W  AI+KY   +                +  P       N   C LKM
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 180 KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239
            ++  A   C  +L++D +  KA  RRA   + L  ++ A  D+ K   + P +K  + E
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 240 LAELNRKL 247
           L ++ +K+
Sbjct: 347 LLKVKQKI 354

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P++A  + N    + K  +Y  A      +L+LD  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
             +A+     A      +++A +   K L L+PNN +A+  L    +K
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++ YP++A  + N    + K  +Y  A      +L+L   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
             +A+     A      +++A +   K L L PNN +A+  L    +K
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQK 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-43
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	4e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-40
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-40
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-40
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-40
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-35
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-34
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-30
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-30
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-25
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	1e-20
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	1e-20
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	3e-20
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	3e-20
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	1e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	1e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	2e-06
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	3e-06
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	5e-06
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	6e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-06
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  149 bits (377), Expect = 2e-45
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 109 DKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH---D 165
               +     +          +S    +++GN+L K G +G A+  Y  A+         
Sbjct: 5   SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ 64

Query: 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225
           AV   NRA C LK+++Y  AE + + +++ D   VKA  RR+ A   L   + A  D+ +
Sbjct: 65  AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124

Query: 226 VLALEPNNKQAEIELAELNRKLN 248
            ++LEP NK  +  L  ++   +
Sbjct: 125 CVSLEPKNKVFQEALRNISGPSS 147

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  146 bits (370), Expect = 4e-44
 Identities = 40/127 (31%), Positives = 70/127 (55%)

Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
           E      +  A   K Q N   K   +  AI+ Y+ AI+  P +A+++ NR+L +L+ + 
Sbjct: 3   EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62

Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
           Y  A  D T +++LD  Y+K Y RRAA+  +L  F  A +D   V+ ++P++K A+++  
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

Query: 242 ELNRKLN 248
           E N+ + 
Sbjct: 123 ECNKIVK 129

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  144 bits (365), Expect = 5e-44
 Identities = 37/111 (33%), Positives = 61/111 (54%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           KE+GNK +  G   +A++ Y+ AI+  PH+ V ++NR+  + K  +Y  A  D   ++ L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
              + K Y R+AAA   LN FE+A++   + L  E NN Q +  L  +  +
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  142 bits (360), Expect = 3e-43
 Identities = 32/110 (29%), Positives = 62/110 (56%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GN+  K+G +  A+  YN A++  P +A+ ++NRA C  K+  +  A  DC   ++L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
           D+ ++K Y R+AA   ++  +  A++     L ++P+N++A   +    R
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148

 Score =  142 bits (361), Expect = 4e-43
 Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
           MS++ R  +QW TFARIW++ D K Q P + A + S  LQG HKP+YH L+DCGDHV++M
Sbjct: 1   MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60

Query: 60  NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           N+RHIA  G +W+++ Y  HTGYPGG     A QLH  DP 
Sbjct: 61  NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPV 101

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  138 bits (350), Expect = 1e-41
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 110 KQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF 169
                     + +         A+  K +GN+  ++G + +A++ Y  AI+  P DA  +
Sbjct: 2   GHHHHHHSHMNPDL--------ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY 53

Query: 170 ANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229
           +NRA C+ K+  +  A  DC   ++L+ T++K Y R+AAA  ++  +  A     K L L
Sbjct: 54  SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

Query: 230 EPNNKQAEIELAELNRK 246
           + + K+A          
Sbjct: 114 DSSCKEAADGYQRCMMA 130

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  136 bits (344), Expect = 1e-40
 Identities = 37/120 (30%), Positives = 60/120 (50%)

Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
           +  SA   KEQGN+L    K+ EA   Y  AI   P  AV++ NRALC+LKM+    A A
Sbjct: 5   KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 64

Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           DC  +L+LD   VKA+      +  +  +++A  ++ +  +L    +    +      ++
Sbjct: 65  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  135 bits (342), Expect = 2e-40
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           + +G +   +  W  A++ Y   I+  P DA  ++NRA    K+ ++  A ADC  +++ 
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRKL 247
           D  +V+AY R+A A+ ++  +  A + +      +          E+ +L  K 
Sbjct: 68  DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  135 bits (342), Expect = 2e-40
 Identities = 40/113 (35%), Positives = 58/113 (51%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GN+ +K   +  A+  Y  AI+  P +AV+F NRA  + K+ NY  A  DC  ++ +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           D  Y KAY R   A  SLN   +A     K L L+P+N+  +  L     KL 
Sbjct: 76  DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  135 bits (342), Expect = 4e-40
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GN  +   ++ +AI+ Y  A+   P + ++ +NRA  +     +  A  D   +  +
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRKLN 248
           D  Y KA+ R   AR  +  ++ A++   K +  E N     +   L    RK+ 
Sbjct: 75  DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  125 bits (316), Expect = 1e-35
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 112 DSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF--- 168
                ++S  +  D +++ SA   KE+GN+  K+ +  EAI KY  A+  + H   +   
Sbjct: 18  YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77

Query: 169 -------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
                          N A C+ K K+Y  A    +  LK+D   VKA  +   A      
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            E+A++++ K  +L PNN            KL 
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  125 bits (315), Expect = 9e-35
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
            SA   KEQGN+L    K+ EA   Y  AI   P  AV++ NRALC+LKM+    A ADC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
             +L+LD   VKA+      +  +  +++A  ++ +  +L    +    +      ++
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  121 bits (305), Expect = 1e-34
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------------- 165
           S+ E++   ++ S    +++GN+L  +  + EAI+ Y  A+                   
Sbjct: 1   SNAEDD---KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE 57

Query: 166 -----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
                   +AN + C+L + +   AE   +  LK + T  KA  RRA AR +    ++A 
Sbjct: 58  LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE 117

Query: 221 KDILKVLALEPNNKQAEIELAELNRKL 247
           +D+  +L   P          ++  + 
Sbjct: 118 EDLKLLLRNHPAAASVVAREMKIVTER 144

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  125 bits (316), Expect = 2e-34
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 19/158 (12%)

Query: 106 EELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD 165
                + + E  E + EE    ++  +   KE+G    KEGK+ +A+ +Y   +    ++
Sbjct: 125 HLKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE 180

Query: 166 AVF---------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210
           + F                 N A+C LK++ + +A   C  +L+LD+   K   RR  A 
Sbjct: 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240

Query: 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            ++N FE AR D  KVL L PNNK A+ +LA   +++ 
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  126 bits (319), Expect = 7e-34
 Identities = 39/119 (32%), Positives = 69/119 (57%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
           +  A   K Q N   K   +  AI+ Y+ AI+  P +A+++ NR+L +L+ + Y  A  D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
            T +++LD  Y+K Y RRAA+  +L  F  A +D   V+ ++P++K A+++  E N+ +
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  109 bits (275), Expect = 1e-30
 Identities = 25/109 (22%), Positives = 46/109 (42%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
           ++     KEQGN L K+G + EA+  Y+  I   P + V ++N+A+  +K+  Y  A   
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237
           C   L+  +T      R     R            + V+ ++   +  +
Sbjct: 61  CQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  108 bits (273), Expect = 5e-30
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           KE GN   K+  +  A++ Y+ A +  P +  +  N+A  + +  +Y      C  ++++
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67

Query: 196 D-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAE 242
                       KAY R   +      ++DA     K LA           +QAE  L E
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127

Query: 243 LNR 245
             R
Sbjct: 128 QER 130

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  104 bits (261), Expect = 2e-28
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K+ GN   K+  + +A   Y+ AI+  P +  F+ N+A  + + K +      C  ++++
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71

Query: 196 D-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
                       KA  R   A +  N    A +   + L+   + +
Sbjct: 72  GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  109 bits (273), Expect = 3e-28
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 17/159 (10%)

Query: 107 ELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166
           E+   D  ++ ++  +    +RI +A   K  GN L KE K  EA+++Y +AI     D 
Sbjct: 154 EVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213

Query: 167 VF-----------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
           +F                   N A C +K+K Y  A   C   L  +    KA  RR  A
Sbjct: 214 MFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273

Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  L   + AR D  K     P++K    EL  L  +  
Sbjct: 274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  102 bits (254), Expect = 5e-25
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANRALCFLKMK 180
           KE+G    K GK+ +A+ +Y   +     +                  F N A+C+LK++
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331

Query: 181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
            Y  A   C  +L LD+   K   RR  A+  +N FE A+ D  KVL + P NK A +++
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391

Query: 241 AELNRKL 247
           +   +K 
Sbjct: 392 SMCQKKA 398

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 96.7 bits (241), Expect = 2e-23
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 92  WQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEA 151
            +  +      K        D  ED + D+++ D   +  +   K  GN   K   W  A
Sbjct: 184 LKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVD-KILLISEDLKNIGNTFFKSQNWEMA 242

Query: 152 IEKYNVAI---QTYPHDA-------------VFFANRALCFLKMKNYVSAEADCTASLKL 195
           I+KY   +   +     A                 N   C LKM ++  A   C  +L++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           D +  KA  RRA   + L  ++ A  D+ K   + P +K  + EL ++ +K+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 27/117 (23%), Positives = 52/117 (44%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
           +A      E G KL+  G+  +A+ +++ A+   P + + +  RA  FL M    +A  D
Sbjct: 23  MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD 82

Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
            T  ++L   +  A  +R          ++A  D  KVL   P+  + +   ++L +
Sbjct: 83  LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKNYVSAEADCTA 191
            E   +L+++G++ +A  KY   ++T P  A +          CF K +  V A   C+ 
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320

Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            L+++   V A + RA A      +++A +D         N++Q    L +  R L 
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 6e-19
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
           LD+A ++  K  + +  + E    +  L +       + Q       G +  AI   +  
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
           ++    DA     RA CF+K      A +D  A+ KL N   +A+ + +     L   E 
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229

Query: 219 ARKDILKVLALEPNNKQA 236
           +  ++ + L L+ ++K+ 
Sbjct: 230 SLSEVRECLKLDQDHKRC 247

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            +   K+ K  EAI   +  +Q  P +     +RA  +L  + Y  A  D   + + +  
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
             +  +    A+R L   +  ++D  K+L ++ N K+ EI  A
Sbjct: 362 DQQIREGLEKAQRLLKQSQ--KRDYYKILGVKRNAKKQEIIKA 402

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L  E  + +++      +                 L       A +   A++  D  
Sbjct: 10  GVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
              AY RRA    ++   + A  D+ KV+ L+ +   A ++   L  K 
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANRALCFLKMKNYV 183
           G+ L+K+GK  EA + +   +++ P +                    ++AL      +Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
           +A A     L++     +  + RA           A  D+     L+ +N +A  +++ L
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220

Query: 244 NRKLN 248
             +L 
Sbjct: 221 YYQLG 225

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
               +KEG+  +AI     A +    +   F   +  + ++ ++  + ++    LKLD  
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 199 YVKAYQRRAAARR------------SLNHFEDARKDILKVLALEPNNKQAEIEL 240
           + + +      ++                + DA      V+  EP+  +  +  
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 15/125 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
               +  GK   A+      IQ           R    LK      AE D    LK + +
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 199 YVKAYQ---------------RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
             +  +                +A        +  A   + K+L +   + +     AE 
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 244 NRKLN 248
             K  
Sbjct: 187 FIKEG 191

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.0 bits (237), Expect = 8e-23
 Identities = 26/110 (23%), Positives = 50/110 (45%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
            E G KL+  G+  +A+ +++ A+   P + + +  RA  FL M    +A  D T  + L
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
              +  A  +R          ++A  D  KVL   P+ ++ +   ++L +
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 92.0 bits (229), Expect = 9e-22
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKN 181
             ++       E   +L+++G++ +A  KY   ++T P  A +          CF K + 
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287

Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
            V A   C+  L+++   V A + RA A      +++A +D         N++Q    L 
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 242 ELNRKL 247
           +  R L
Sbjct: 348 KAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
           LD+A ++  K  + +  ++E    E  L +       + Q         +  AI   +  
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
           ++    DA     RA CF+K      A +D  A+ KL +   +A+ + +     L   E 
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206

Query: 219 ARKDILKVLALEPNNKQA 236
           +  ++ + L L+ ++K+ 
Sbjct: 207 SLSEVRECLKLDQDHKRC 224

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           +    +KEG+  +AI     A +    +   F   +  + ++ ++  + ++    LKLD 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 198 TYVKAYQRRAAARR------------SLNHFEDARKDILKVLALEPNNKQAEIEL 240
            + + +      ++                + DA      V+  EP+  +  +  
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 15/125 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
               +  GK   A+      I            R    LK      AE D    LK + +
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 199 YVKAYQ---------------RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
             +  +                +A        +  A   + K+L +   + +     AE 
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 244 NRKLN 248
             K  
Sbjct: 164 FIKEG 168

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANR------------ALCFLKMKNYVSAE 186
                + G    ++ +    ++        FA+             A   ++   Y  A 
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254

Query: 187 ADCTASLKLD----NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242
           +   + +K +       V++ +R            +A +   +VL +EP+N  A  + AE
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314

Query: 243 LNRKLN 248
                 
Sbjct: 315 AYLIEE 320

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 19/84 (22%), Positives = 31/84 (36%)

Query: 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224
           D           L       A +   A++  D     AY RRA    ++   + A  D+ 
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 225 KVLALEPNNKQAEIELAELNRKLN 248
           KV+AL+ +   A ++   L  K  
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQG 85

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 92.6 bits (231), Expect = 1e-22
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           + +G +   +  W  A++ Y   I+  P DA  ++NRA    K+ ++  A ADC  +++ 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRK 246
           D  +V+AY R+A A+ ++  +  A + +      +          E+ +L  K
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K +GNK  K  ++ EAIE YN A + +  D  +  NRA    +   Y +A +    +++ 
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                  Y+  + +   + +      D+ K +     +   
Sbjct: 68  GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 21/98 (21%), Positives = 35/98 (35%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            + L K     + ++K        P  A         +    ++ +A    T  +K    
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             + Y  RAAA   L  F +A  D  K +  +PN  +A
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 1/110 (0%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                ++G++  AI   N A++        +   +  F ++ N      D   +++    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            +  + R A     L + E   K       + P   +      +     +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                + G     +      I+ Y          A    K++N         A   ++  
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +  +       + + + +A K   +++   P + + 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 1/74 (1%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
              A         F K + +  A      + +L          RAAA      +E A   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 223 ILKVLALEPNNKQA 236
           +   +      +  
Sbjct: 61  LNDAVEQGREMRAD 74

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K++GN+  +  K+ +AI+ YN A++    D VF++N + C++ + +        T +L+L
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKV-LALEPNNKQAEIELAELNRKLNI 249
              Y K   RRA+A   L  F DA  D+  + L  + N+   E  L     K  +
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 82.5 bits (204), Expect = 5e-18
 Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 7/210 (3%)

Query: 39  QGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEID 98
           + + K    P          +    +    Y+    A          +         + D
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209

Query: 99  PTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
            +  KA    ++Q    +E+  ++E+       A+  +  G     +     A E    A
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLKEKL------AISLEHTGIFKFLKNDPLGAHEDIKKA 263

Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
           I+ +P    +    AL      +          +LKLD+     Y  R      L +++ 
Sbjct: 264 IELFPRVNSYI-YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322

Query: 219 ARKDILKVLALEPNNKQAEIELAELNRKLN 248
           A KD  K   L+P N    I+LA L  + N
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYREN 352

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.9 bits (179), Expect = 9e-15
 Identities = 18/110 (16%), Positives = 38/110 (34%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
              +       E    ++ A++   +++  + +R      ++NY  A  D   + +LD  
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            +  Y + A      N F+D      +     P   +     AE+    N
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN 386

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK---------MKNYVSAEADC 189
              L  +  + +A+++Y++AI+        +   A    K         ++N++ A    
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             + KLD    +A    A  +      ++A     +   L    ++ 
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 16/115 (13%), Positives = 35/115 (30%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G        + +A + ++ A +  P +   +   A    +   +   E   + + +    
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253
             +     A      N F+ A K     + LE       + +A L  K  +    
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                +E K+ +    ++ A + +P         A       ++  A      +++L+N 
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404

Query: 199 YVKAYQRRAAA---------RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
               Y   A             ++ +F +A   + K   L+P ++QA+I LA++  +  
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 14/79 (17%), Positives = 21/79 (26%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
           IA  V       +      + EA      A +  P         A   L+ ++   A   
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471

Query: 189 CTASLKLDNTYVKAYQRRA 207
              S  L  T  +  Q   
Sbjct: 472 FEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
              A+   ++   F + K Y  A      +L+L    V  Y   +A   S+   +   + 
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEM 61

Query: 223 ILKVLALEPNNKQAEIELAELNRKLN 248
             K L L+P+  +  +  A  N  L 
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLG 87

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Length = 142

 Score = 84.5 bits (210), Expect = 1e-20
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 11  NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
            T  R W++ DA  +     A  +++ L+G+HK  Y P  D GD++IV+N+  +A+ G +
Sbjct: 9   ETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNK 68

Query: 71  WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
              + Y+HHTG+ GG+      ++    P 
Sbjct: 69  RTDKVYYHHTGHIGGIKQATFEEMIARRPE 98

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Length = 140

 Score = 84.1 bits (209), Expect = 1e-20
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 15  RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
             W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++
Sbjct: 11  PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 70

Query: 75  AYFHHTGYPGGVSWTLAWQLHEIDPT 100
            Y  ++GYPGG+      ++    P 
Sbjct: 71  IYTRYSGYPGGLKKIPLEKMLATHPE 96

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 15  RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
             W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++
Sbjct: 34  PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 93

Query: 75  AYFHHTGYPGGVSWTLAWQLHEIDPT 100
            Y  ++GYPGG+      ++    P 
Sbjct: 94  IYTRYSGYPGGLKKIPLEKMLATHPE 119

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Length = 174

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 25/90 (27%), Positives = 43/90 (47%)

Query: 11  NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
               + W + DA        A +I+  ++G+H+P + P    GD V+V+N+  +AL G +
Sbjct: 35  KNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKK 94

Query: 71  WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
              + Y  +TGY GG+    A +     P 
Sbjct: 95  LDDKVYTRYTGYQGGLKTETAREALSKHPE 124

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 26/90 (28%), Positives = 44/90 (48%)

Query: 11  NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
               + W++ DA        A  I+ H++G++   Y P  D G  VIV+N+  +A+ G +
Sbjct: 108 VPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKK 167

Query: 71  WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
             ++ Y  H+G PGG+      QL +  P 
Sbjct: 168 RTQKLYRRHSGRPGGLKEETFDQLQKRIPE 197

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 109 DKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168
              + + D           R A AV  K +GN       + EAI+ Y  AI+  P++ VF
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228
           ++N + C++   +        T +L++   + KA  RRA+A  SL +F DA  D L VL+
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLS 120

Query: 229 LEPNNKQAEIELAELNRKLN 248
           L  +   A IE   L R LN
Sbjct: 121 LNGDFDGASIE-PMLERNLN 139

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160
           L K+ +      S    +  + E      A A+     G     +    +A      +I 
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENA----ALALCYT--GIFHFLKNNLLDAQVLLQESIN 271

Query: 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
            +P    +    AL     +N          ++ L+  Y   Y  R      L  +++A+
Sbjct: 272 LHPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330

Query: 221 KDILKVLALEPNNKQAEIELAELNRKLN 248
           +D  K  +L P N    I+LA L  K  
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQG 358

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 16/110 (14%), Positives = 36/110 (32%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
              L  +    E  + +  A+   P     + +R   +  +++Y +A+ D   +  L+  
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            V  Y + A        F ++     +     P   +     AE+     
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 19/111 (17%), Positives = 32/111 (28%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G        +  A E +  A    P +   +   A    K   +  +EA    +     T
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249
             +     A        F+ A K       LE   ++  + +  L  K  I
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 16/126 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
              L K+GK+ E+   +N     +P         A       ++ +A      + +L+  
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 199 YVKAYQRRAAA----------------RRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242
             K +                      +     F  A K + K   L+P ++QA+I LA+
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470

Query: 243 LNRKLN 248
           L  ++ 
Sbjct: 471 LKLQME 476

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----------------MKNY 182
              L   G +  AI++Y++A +                 K                 + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 183 VSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            +A    T + +LD    +A    A  +  +   ++A +       L     + 
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKNYVSAEADCTASLKLDNTYVK 201
           G                P     +A    NR   F   KN+  A      +++LD     
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            Y   +A   S    E   +   K L ++P++ +A +  A  N  L 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 1/125 (0%)

Query: 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV 183
           + L       Y             +   +    V      + A+      +      N +
Sbjct: 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260

Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
            A+     S+ L  T   +Y   A       + ++  K   K + L P          ++
Sbjct: 261 DAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319

Query: 244 NRKLN 248
              L 
Sbjct: 320 YFILQ 324

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           + + +     +  A    + A+Q      D  +     L       Y S  +  T    L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
                 A           N+  DA+  + + + L P  
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 4/124 (3%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
               +  G   + IE    A++  P  +     RA     + N+  A  D +        
Sbjct: 66  SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125

Query: 197 -NTYVKAYQRRAAARRSLNHF-EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI 254
               ++    R   ++++    E+  KD  +   + P+N          +  L +     
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185

Query: 255 KVDF 258
             ++
Sbjct: 186 SSNY 189

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 15/79 (18%), Positives = 24/79 (30%)

Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSA 185
           + +         Q    + E K+  AI+    A +  P         A   L+M+    A
Sbjct: 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

Query: 186 EADCTASLKLDNTYVKAYQ 204
                 S  L  T  +  Q
Sbjct: 482 IELFEDSAILARTMDEKLQ 500

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 23/110 (20%), Positives = 41/110 (37%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   + G+  EAIE Y  A++  P     + N A   +   +   A     ++L+ +  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
                       ++L   E+A+   LK +  +PN   A   L  +     
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 15/112 (13%), Positives = 35/112 (31%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E  ++  + G +  A        +  P +       +    + +    +    T ++K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
               +AY       +     ++A +     L L+P+     I LA       
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.5 bits (171), Expect = 9e-14
 Identities = 19/111 (17%), Positives = 39/111 (35%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
             +   +  +   +     +AI+  P  A  ++N    + +      A      +L+L  
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            ++  Y   AAA  +    E A +  +  L   P+      +L  L + L 
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 20/109 (18%), Positives = 42/109 (38%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            N L ++G   EA + YN A++  P  A    N A    +  N   A      +L++   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           +  A+   A+  +     ++A     + + + P    A   +    +++
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 24/110 (21%), Positives = 41/110 (37%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN L +   +  A+  Y  A+   P+ AV   N A  + +      A      +++L   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  AY   A A +      +A       L L P +  +   LA + R+  
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 25/110 (22%), Positives = 44/110 (40%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                ++G    AI+ Y  AI+  PH    + N A    +  +   AE     +L+L  T
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  +    A  +R   + E+A +   K L + P    A   LA + ++  
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 27/98 (27%), Positives = 41/98 (41%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN L   G+  EA   Y  AI+T P+ AV ++N    F        A      ++ LD  
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           ++ AY       +    F+ A    L+ L+L PN+   
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 19/110 (17%), Positives = 37/110 (33%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
              LV  G    A++ Y  A+Q  P      ++       +     A+A    +++    
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  A+        +      A     K + L+PN   A I L  + ++  
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 16/98 (16%), Positives = 33/98 (33%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G     +G+   AI  +  A+   P+    + N      + + +  A A    +L L   
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           +   +   A         + A     + + L+P+   A
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 23/110 (20%), Positives = 39/110 (35%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L+K+G+   AI++Y  A+         +      F    N+  A       ++   T
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
             K +     A      +  A    +KVL L+PN     +  A  N   +
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 3/114 (2%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA---SLK 194
             + L K   + EAIE +N       +    +  RA+C+ ++  Y  A+ D       + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 195 LDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
                   ++              A +     +  +        ++        
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 3/101 (2%)

Query: 139 GNKLVKEGKWGEAI---EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
                +  K+  A    E Y   +      +  F       +K      A     A++  
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           D T +  Y +  +   +  +F  A + + K +     + + 
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G+    +G +  AI+     I+    D   F      +   K YV A++     L+L   
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 199 YVKAYQRRAAARRSLNH---FEDARKDILKVLALEPNNKQA 236
               Y  RA A  + +       A+    K++ +       
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKL 195
           G       ++ +A   +   ++  P+  + +  RA              A+      +++
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 196 D--------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                    +  ++A +  A           A      +LAL+P NK+A
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 3/69 (4%)

Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDI---LKVL 227
             A    K  NY  A                 Y RRA     L  ++ A+KDI      +
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 228 ALEPNNKQA 236
                    
Sbjct: 68  NATKAKSAD 76

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVF--------FANRALCFLKMKNYVSAEADCTAS 192
               + K G A   Y   I+                    A  +   ++ V A+A     
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247

Query: 193 LKLDNTYVKAYQRRAAARRSLNH 215
           L LD T  KA           +H
Sbjct: 248 LALDPTNKKAIDGLKMKLEHHHH 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 24/110 (21%), Positives = 42/110 (38%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G      G    A   ++ A+   P     F    +   +  N+ +A     + L+LD T
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           Y  A+  R  A       + A+ D+L     +PN+    + L    +KL+
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 159

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY----PHDAVFFANRALCFLKMKNYVSA 185
            S   S+     L    +    + +    + +        A     R + +  +     A
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 186 EADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             D + +L +     + +           +F+ A +    VL L+P    A
Sbjct: 63  RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L + G +  A E ++  ++  P       NR +          A+ D  A  + D  
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143

Query: 199 YVKAYQRRAAARRSLNHFE---DARKDILKVLALEPNNKQAEIELAELNRK 246
                     A + L+  +     ++   K    +      E  L  ++ +
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 1/116 (0%)

Query: 107 ELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166
           +LD++ + E  +   E+ D ++    +     GN + ++                  H +
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLS 215

Query: 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
                    +L + +  SA A    ++  +      ++        L   +D   +
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 7/109 (6%)

Query: 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYV 200
           ++    +A E      +    +   +         +         +AD T +  L     
Sbjct: 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215

Query: 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA----EIELAELNR 245
           +          SL   + A       +A   +N        +EL+ L +
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
             G    + GKW +A + +        +DA +F     C   +  Y  A    +    +D
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-------KQAEIELAELNRK 246
               +     A     L   + A        AL            +A   L  +  +
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 14/94 (14%), Positives = 29/94 (30%)

Query: 155 YNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214
             +                    +   +  A+    A   LD+   + +    A R+SL 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            +E A +       ++ N  +     AE + +L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 21/99 (21%), Positives = 38/99 (38%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           Q  +  + G + +A E +  AI+    DA+ + N A     +     A A    +L+LD+
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           +   AY            +++A+    K L     N   
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 17/98 (17%), Positives = 35/98 (35%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  LVK  +   A+     A++   +D        +C         A +   A  + D  
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           +  A+           + E A + + K + ++P++  A
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 15/98 (15%), Positives = 36/98 (36%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN  V +  + EA + +  A++    +   F       +K++    A      +++L+  
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +A  +      +    ++A      V   +P +  A
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 14/98 (14%), Positives = 33/98 (33%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            N L    +   A+  Y+ A++     A  +      ++  + Y  A+     +L+    
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +         L   + A   + + + L  N+ +A
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 28/77 (36%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L  EG   EA+ ++    +  P  A  F N  + +   +N   A      ++ +   
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225

Query: 199 YVKAYQRRAAARRSLNH 215
           ++ A   +       +H
Sbjct: 226 HMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 149 GEAIEKYNVAIQTYPHDAVFFANRALC----FLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
           G +   ++ +    P  +   +           +  +Y  A    T +++ +      Y 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             A    S+N  E A     K L L+ +   A
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATA 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 13/110 (11%), Positives = 26/110 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A    P   V  A+       ++           +  L   
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            V A       +++L   +     + +   L P    A    +   + L 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 11/100 (11%), Positives = 22/100 (22%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
                          +     A    P   V  A+       ++           +  L 
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
              V A       +++L   +     + +   L P    A
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 2/107 (1%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
             A+ S                +     A    P   V  A+       ++         
Sbjct: 344 VVAIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +  L    V A       +++L   +     + +   L P    A
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 12/98 (12%), Positives = 23/98 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A    P   V  A+       ++           +  L   
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P    A
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 11/99 (11%), Positives = 22/99 (22%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
                         +     A    P   V  A+       ++           +  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             V A       +++L   +     + +   L P    A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 13/96 (13%), Positives = 20/96 (20%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A    P   V  A+       ++           +  L   
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
            V A       R +L             LA   N+ 
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 12/98 (12%), Positives = 24/98 (24%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A    P   V  A+ +     ++           +  L   
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P    A
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 12/100 (12%), Positives = 24/100 (24%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
             G            +     A    P   V  A+       ++           +  L 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
              V A    +  +++L   +     + +   L P    A
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 12/111 (10%), Positives = 24/111 (21%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
                          +     A    P   V  A+       ++           +  L 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
              V A       +++L   +     + +   L P    A        + L
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 2/119 (1%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
             A+ S                +     A    P   V  A+       ++   +     
Sbjct: 106 VVAIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
             +  L    V A       +++L   +     + +   L P    A        + L 
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 13/111 (11%), Positives = 26/111 (23%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           +G     E             +   P   V  A+       ++           +  L  
Sbjct: 44  RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
             V A       +++L   +     + +   L P    A        + L 
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 26/101 (25%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
            +       E     A E     +Q      +  A R         +    A   A L L
Sbjct: 8   HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               V A       +++L   +     + +   L P    A
Sbjct: 68  TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.0 bits (160), Expect = 2e-12
 Identities = 19/110 (17%), Positives = 42/110 (38%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            N   ++G   EA+  Y  A++ +P  A   +N A    +      A      ++++  T
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  AY       + +   + A +   + + + P    A   LA +++   
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 23/109 (21%), Positives = 48/109 (44%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            + L ++GK  EA+  Y  AI+  P  A  ++N      +M++   A    T +++++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           +  A+   A+  +   +  +A       L L+P+   A   LA   + +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN L +      A++ Y  AIQ  P  A   +N A       N   A A    +LKL   
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           +  AY   A   + +  + D  + + K++++  +  + 
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 12/86 (13%), Positives = 29/86 (33%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
           P  A    N A    +  N   A      +L++   +  A+   A+  +     ++A   
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 223 ILKVLALEPNNKQAEIELAELNRKLN 248
             + + + P    A   +    +++ 
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQ 91

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           +G     +  W  A++ ++         +    N    +  +KN   AE   T S+  D 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
               AY +R         ++ A KD+ + L     N+  + ++  L  KL 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDN 197
           G          EA + +  +I    H AV +  R + + + + Y  A  D   +L  L  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 198 TYVKAYQR---------------RAAARRSLNHFEDARKDILKVLALEPNNKQAEIE--L 240
             +  Y+                 A        ++ A + +    +++   + ++I+  +
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163

Query: 241 AELNRKLNIPLSPIKVDFLHNP 262
             + ++       I V  L  P
Sbjct: 164 ECVWKQKLYEPVVIPVGRLFRP 185

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224
           +A+   N  +     K++  A    +    + + + +           L +  +A K   
Sbjct: 5   EAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFT 61

Query: 225 KVLALEPNNKQA 236
           + +  + +   A
Sbjct: 62  RSINRDKHLAVA 73

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----------------VFFANRALCFLKMK 180
           ++ +  ++ G+ G+A+  +   I                             AL + K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
           NY  A       L+     V   +  A  +      +DA +   K+L LE +N  A I L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 241 AEL 243
              
Sbjct: 129 GNY 131

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 19/152 (12%), Positives = 39/152 (25%), Gaps = 4/152 (2%)

Query: 101 LDKACEELDK---QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNV 157
             +A     +    + D  E       D +   S+  + E      K   + +A   Y  
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRSLNHF 216
            +Q  P++       A   +       A       L+L+   + A          +    
Sbjct: 80  LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139

Query: 217 EDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +   +   K L+     + A            
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRA-LCFLKMKNYVSAEADCTASLKLDN 197
               V  G+  +A+  Y   +Q    +           +L  +            L    
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE------IELAELNR 245
               A  R   ++     +E AR  + KV+   P+ +  +          E+NR
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 12/109 (11%), Positives = 23/109 (21%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            +  +  G            +  +P      A         + +  A      +      
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           +         A       E A     +   L P       +L    R+L
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 16/103 (15%), Positives = 31/103 (30%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
                 + +   A++  P D V +   A   L M +  + E      L L   + +A  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
               R +     +A   + +     P +    + L        
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 23/98 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G     + +  EA      A    P                    +A A  T + +L   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                 +    RR L  +        +V A       A
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           G  L ++ ++ EA ++   A Q   YP  +  F N  L  L+MK    A+     SL+L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
                     A        +  AR+           N ++ +    L +   
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G   ++  K  +A E +  +++   +        A    K + YV A        +    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             ++        +     + A    L++  L P + + 
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 108 LDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV 167
           L  + S   +++ ++ +     A   Y  + G   ++ G   +A      A++  P  A 
Sbjct: 14  LVPRGSHMGDQNPLKTDKGRDEARDAYI-QLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72

Query: 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227
             A  A+ F        A+ +   +L  D+   +              +E+A + +L+  
Sbjct: 73  AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

Query: 228 ALEPNNKQAE 237
                 +++ 
Sbjct: 133 QDTLYPERSR 142

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
              E+    +     + +        + + + + +A     A+L  D TY  A++     
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 210 RRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKL 247
            +       AR+     LA   +   +Q   EL    R+L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-- 195
           +G      G + E+I+ +  AIQ  P ++ ++  +      ++ Y  A       + +  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
           D      +  +A A R +   E   +       LE ++
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 10/75 (13%), Positives = 26/75 (34%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
             +   +    +      NY  +      +++LD    K +  +  A  +L  +E+A   
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 223 ILKVLALEPNNKQAE 237
              V+ +  +    +
Sbjct: 63  YNYVINVIEDEYNKD 77

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 17/125 (13%), Positives = 40/125 (32%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E+G  ++K     EA   +    Q  P     + +  L   + +    A      +  LD
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKV 256
              +  +   A +  + ++   A   +   L  +P  +Q      + +  ++      + 
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

Query: 257 DFLHN 261
            F   
Sbjct: 146 FFFAA 150

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
            + A   L        + E+        D     +  + +        ++ E     + A
Sbjct: 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164

Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
           ++  P+DA   A+  + +    NY SA A+   +++L     + + +  A   + N  ++
Sbjct: 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224

Query: 219 ARKDILKVLALEPNNKQA 236
           A     + L + P   + 
Sbjct: 225 ALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 14/103 (13%), Positives = 35/103 (33%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G        +  A      A++  P DA  +               A      +L ++  
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
           YV+     A +  +++ ++ A K +++ + ++        E +
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 12/91 (13%), Positives = 22/91 (24%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
           G   +    Y                  L  LK+ N   A     A  +      +A++ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +        A   +     L+P +   
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L    +  EA++ YN A+   P       N A+ +  M  Y  A      ++ +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVL 227
                   +          D  + +L V+
Sbjct: 273 GTTPTGEASREAT--RSMWDFFRMLLNVM 299

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 139 GNKLVKE-GKWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           G  L     +  E++  ++ A+    YP   +   N+ +C  K   +  AEA    SL  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA-ELNRKLN 248
              +  A++  A  +       DA     K  +     +  ++ L  ++ + L 
Sbjct: 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
             + ++   + +A      A+++ P + + +  RA  +  +K    A+     +L +   
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 197 -----------------------------------NTYVKAYQRRAAARRSLNHFEDARK 221
                                               T   A   +         F  A  
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134

Query: 222 DILKVLALEPNNKQAEIELAELNRKLN 248
            + + LA +P    A  ELA       
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAG 161

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
                   +G+  EA   +        ++  +    A  +   + +  A      +  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAEL 243
                        +  L     A++    V+    + K   +A+  L  +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 21/99 (21%)

Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
            +                   + A  F        AE         D   V      AA 
Sbjct: 20  NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79

Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            +    F+ A        AL  N+        +   +L 
Sbjct: 80  YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 17/113 (15%), Positives = 36/113 (31%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E+G + ++EG    A+  +  A+Q  P     +        + +  + A +     L+L 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249
                A    A +  + +    A + +   L   P          E      +
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 16/109 (14%), Positives = 43/109 (39%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G      G++ +A++ +  A+   P+D + +               A A    +L+L   
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           Y+++      +  +L    +A +  L+ L ++  ++    E   ++  +
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 6/141 (4%)

Query: 101 LDKACEELDK---QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNV 157
             +ACE L                 EE           +  G+ L+ +  + E  E +  
Sbjct: 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLA 206

Query: 158 AIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
           A++  P   D        + F     Y  A    TA+L +       + +  A   + N 
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266

Query: 216 FEDARKDILKVLALEPNNKQA 236
            E+A     + L L+P   ++
Sbjct: 267 SEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 15/115 (13%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G    +  +   AI      ++  P +       A+ F        A       L+    
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164

Query: 199 YVKAYQRRAAARRSLNH---------------FEDARKDILKVLALEPNNKQAEI 238
           Y                               F + ++  L  + L+P +   ++
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 15/98 (15%), Positives = 28/98 (28%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G    K G++ +A+            D     +  + ++K             SL     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            VK           +  ++ A   ++KV    P N   
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.7 bits (138), Expect = 4e-10
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G   V+  K+  A+       +  P +        +    +  +  A      +L L   
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             K ++  A +   +   E+A     K   L+      
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 18/98 (18%), Positives = 32/98 (32%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G   VK G      E    ++   P +        L +++++ Y  A        + +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                 R   A  +L  F++A       L L PN  + 
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 11/74 (14%), Positives = 22/74 (29%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
               V++ ++ +   K   Y  A          D   V        A       +   + 
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 223 ILKVLALEPNNKQA 236
           + + LA  P+N + 
Sbjct: 65  LERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L   G++ EAI+ + +A+   P++       A  + +M  +  A      + +LD  
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176

Query: 199 YVKAY 203
                
Sbjct: 177 ASVEL 181

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 91  AWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGE 150
            W+       + +  E  ++      E+      +           E+G K +KEG    
Sbjct: 25  EWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPV 83

Query: 151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210
            I     AI   P DA  +    +   + +N  +A       L+L    +KA    A + 
Sbjct: 84  TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143

Query: 211 RSLNHFEDARKDILKVLALEPNNKQA 236
            + +H +DA + +   +   P  K  
Sbjct: 144 TNTSHQQDACEALKNWIKQNPKYKYL 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 38/98 (38%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G      G++  AI+ +N A+   P D   +               A    T +L++   
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           ++++      +  +L  + +A  + L  L+L+  ++  
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 10/98 (10%), Positives = 28/98 (28%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G    +      AI      ++  P++       A+ +    +   A       +K +  
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           Y    + +  +         +  D   +  ++    +A
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
               V         E Y  A        D        + F     +  A     A+L + 
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                 + R  A   + +  E+A +   + L ++P   ++
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 12/110 (10%), Positives = 24/110 (21%), Gaps = 12/110 (10%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                      +A E     I+  P       N+       +    +  D +    +   
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 199 YVKAYQR------------RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           Y++A  +                      F  A       L + P +   
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G  L    +  EA+E Y  A++  P       N  +  + +  Y  A ++   +L L   
Sbjct: 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVL-ALEPNNKQAEIELAELNRKLNI 249
                Q    A     +   A +  L ++   E        +L  L R  N+
Sbjct: 314 SRNQQQVPHPAIS--GNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNL 363

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 26/95 (27%), Positives = 43/95 (45%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P  A  + N    + K  +Y  A      +L+LD  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
             +A+     A      +++A +   K L L+P +
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 27/98 (27%), Positives = 45/98 (45%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P  A  + N    + K  +Y  A      +L+LD  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +A+     A      +++A +   K L L+P + +A
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 11/98 (11%), Positives = 23/98 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                        +     A    P   V  A+       ++           +  L   
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P+   A
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 2/107 (1%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
             A+ S                +     A    P   V  A+       ++         
Sbjct: 226 VVAIASH--DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +  L    V A       +++L   +     + +   L P+   A
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 2/107 (1%)

Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
             A+ S                +     A    P   V  A+       ++         
Sbjct: 599 VVAIASN--IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +  L    V A       +++L   +     + +   L      A
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 4e-09
 Identities = 12/100 (12%), Positives = 24/100 (24%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
             G            +     A    P   V  A+       ++           +  L 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
              V A       +++L   +     + +   L P+   A
Sbjct: 359 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 11/109 (10%), Positives = 24/109 (22%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                        +          P   V  A+       ++           +  L   
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
            V A       +++L   +     + +   L P+   A        + L
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 11/100 (11%), Positives = 23/100 (23%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
                          +     A    P   V  A+       ++           +  L 
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
              V A       +++L   +     + +   L P+   A
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 6e-08
 Identities = 11/98 (11%), Positives = 23/98 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A        V  A+       ++           +  L   
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P+   A
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 11/91 (12%), Positives = 23/91 (25%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
                 +     A    P   V  A+       ++           +  L    V A   
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +++L   +     + +   L P+   A
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 13/109 (11%), Positives = 25/109 (22%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A    P   V  A+       ++           +  L   
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
            V A       +++L   +     + +   L P    A        + L
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 11/98 (11%), Positives = 22/98 (22%), Gaps = 1/98 (1%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                        +     A    P   V  A+       ++           +  L   
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A        ++L   +     + +   L P+   A
Sbjct: 395 QVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 11/91 (12%), Positives = 23/91 (25%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
                 +     A    P   V  A+       ++           +  L    V A   
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +++L   +     + +   L P+   A
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVA 499

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 11/98 (11%), Positives = 22/98 (22%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G            +     A        V  A+       ++           +  L   
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P    A
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 11/98 (11%), Positives = 23/98 (23%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                      + +     A    P   V  A+       +            +  L   
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
            V A       +++L   +     + +   L P+   A
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 150 EAIEKYNVAIQTY-----PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
           EA+     A+        P   V  A+       ++           +  L    V A  
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230

Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                +++L   +     + +   L P+   A
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVA 262

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 10/91 (10%), Positives = 21/91 (23%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
                 +     A    P   V  A+       ++           +  L    V A   
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +++L   +     + +   L      A
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 23/145 (15%)

Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP------------HDAVFFANRA 173
           L  +  A  +     + +  G++ EA      A++                DA   A  A
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 174 LCFLKMKNYVSAEADCTASLKLDN-----------TYVKAYQRRAAARRSLNHFEDARKD 222
                ++++  A      +L   N            ++ A   RA A   L    +A  +
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 223 ILKVLALEPNNKQAEIELAELNRKL 247
             KV+ +    K        +    
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVA 149

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 13/134 (9%)

Query: 120 DVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM 179
           ++  + L+     +Y         + G + +A   +        +D+ FF     C   M
Sbjct: 15  EISSDTLE----QLY--SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM 68

Query: 180 KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------ 233
             Y  A    +    +D    +     A          +A   +     L  N       
Sbjct: 69  GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128

Query: 234 -KQAEIELAELNRK 246
             +    L  +  K
Sbjct: 129 STRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 13/103 (12%), Positives = 29/103 (28%)

Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
           G  G       +  +          + A    +   Y  A     A   LD+   + +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
             A R+++  ++ A         ++    +     AE   +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 15/96 (15%), Positives = 32/96 (33%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E+G  ++K     EA   +    Q  P     + +  L   + +    A      +  LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
              +  +   A +  + ++   A   +   L  +P 
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
              L  LK+ N   A     A  + +    +A++     +        A   +     L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 231 PNNKQAEIELA 241
           P +      LA
Sbjct: 82  PKDIAVHAALA 92

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 13/96 (13%), Positives = 29/96 (30%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
             +    EG+  +AI  Y  A + +    + +    +  +++ N + A     +S  L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
                         + +  + A       L L    
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 8/99 (8%), Positives = 27/99 (27%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           + + L    ++ + +      ++  P++   +        +              +    
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                +         +N   +AR+   K   ++P    A
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 17/110 (15%), Positives = 32/110 (29%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G   +   K  EA   ++ +    P     +   A  F     +  A +  T + +L   
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
               Y         L +   A + +    AL   +     EL  +    +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
              L + G+  +     N  +  +P  AV +    + +L +     A    + S  +D  
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           +  A+   A +       + A         L       
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTY-------PHDAVFFANRALCFLKMKNYVSAEADC 189
           E G     +     AI  +  A+             A  +AN    + K+K Y +A    
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
              L L       +   A           A   + + LA+ PN   A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 24/71 (33%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G+   K   +  AI+  N  +    +DA      AL +L  K    A      SL +   
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582

Query: 199 YVKAYQRRAAA 209
            + A      A
Sbjct: 583 EIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 16/159 (10%), Positives = 51/159 (32%), Gaps = 4/159 (2%)

Query: 93  QLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAI 152
           +L++    L+   E    +  +++    + ++   ++ +++    +G        +  A 
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAK 220

Query: 153 EKYNVAIQTYPHDAVFFANRALCFLKMKNY---VSAEADCTASLKLDNTYVKAYQRRAAA 209
           E Y  A+         F       L   +    +  + + +   K D  ++++       
Sbjct: 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280

Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           + S        +D L  +     +    +  A+     +
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 29/98 (29%), Positives = 48/98 (48%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P++A  + N    + K  +Y  A      +L+LD  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             +A+     A      +++A +   K L L+PNN +A
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P++A  + N    + K  +Y  A      +L+LD  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

Query: 199 YVKAYQRRAAARRSL 213
             +A Q    A++  
Sbjct: 110 NAEAKQNLGNAKQKQ 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 14/81 (17%), Positives = 28/81 (34%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G+   K  K+ EA++ +  A+   P +A  ++        M N+ +A      +L L   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 199 YVKAYQRRAAARRSLNHFEDA 219
              +               +A
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 15/99 (15%), Positives = 26/99 (26%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
            G+    E +  +A+  Y  A Q      +      L +    N   AE   + +L +  
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                             ++ A K  L  L         
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 9/109 (8%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQ---------TYPHDAVFFANRALCFLKMKNYVSAEA 187
           E G    + G+W  A + +  A++         T         N      K+K Y  A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
               +L L       Y         + +FE+A       L L  ++  +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)

Query: 139 GNKLVKEGKWGE-AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           G   +  G   E A    + A          +      F     +  A A    + +L  
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
                           N+ + A +   + L++ P +     E+  +  +  
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 1/100 (1%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
              +      +    +  +V ++  P  A          +++             + L  
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87

Query: 198 TYVKAYQRRAAARRSL-NHFEDARKDILKVLALEPNNKQA 236
           +   ++         + +  E AR+ + K   LE     A
Sbjct: 88  SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 8/87 (9%), Positives = 24/87 (27%)

Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
            +      ++     +     + A       ++       +  ++ D  +          
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 210 RRSLNHFEDARKDILKVLALEPNNKQA 236
              LN   +      K++ L P+N  +
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVS 92

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
           G +L   G++  A+  +  A++  P D       A   LK+     A  +    +     
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 197 ---------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                      YV  Y++     R   + E A   +     + P     
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           ++  ++   +G   +A+     A +  P  A     R L +  +     AEA    +L L
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
           ++   +     A    S+   ++A     K L   P +   
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G      G+  +A      A+       +     A  +L M     A A    +L+    
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
            +    R A+A       E+A     +  ALE ++ 
Sbjct: 184 DLDLRVRYASALLLKGKAEEA----ARAAALEHHHH 215

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 3/119 (2%)

Query: 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQ---TYPHDAVFFANRALCFLKMKNYVSAEADC 189
            Y     N         +A+  Y  A +       +     NRA      ++Y  A    
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281

Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           + +  LD  + +  QR       L+      +   K    +  +    +  A L    +
Sbjct: 282 SQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGD 340

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 11/131 (8%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFL--------KMK 180
           ++  +   +  +         +++ +  +A+Q    D   +      +L          K
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

Query: 181 NYVSAEADCTASLKLD---NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237
               A +    + K+D   ++    +  RA   +    + +A +   +  AL+P   + +
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 238 IELAELNRKLN 248
               +L   L+
Sbjct: 296 QREQQLLEFLS 306

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 8/95 (8%)

Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR---- 205
           EA    + A++  P     +      + K  +  SA    + +L      V         
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180

Query: 206 ----RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
                 +      H  D+ +     + ++  + ++
Sbjct: 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 12/69 (17%)

Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
            I DA+       A  +++                G+ V V+N+    + G E +    
Sbjct: 9  DVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVEK 56

Query: 77 FHHTGYPGG 85
          +      G 
Sbjct: 57 YEKRVDIGN 65

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 4/110 (3%)

Query: 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN----YVSAEADCTASLKLD 196
           +L        AI+    AI+  P +       AL   KM+         E     +L+  
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
                  +  A   R  +  + A + + K L   PNN     ++    R 
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 90  LAWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGK-- 147
            AW  + +   L      +DK      +    +     RI S     E+G   +K G   
Sbjct: 100 YAWVYYHMG-RLSDVQIYVDKV-----KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ 153

Query: 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAE---ADCTASLKLDNTYVKAYQ 204
              A   +  A++  P +  F +  A+   ++ N+  ++        +++L+        
Sbjct: 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213

Query: 205 RRAAA----RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
             A      R       +  K + + L   P         A+  R+ +
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 19/129 (14%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
                +  + GE  +    A++  P       + A  + +      A      +L+    
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 199 YVKAY-------------------QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239
               +                         R+ L     A   + K      N  +    
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339

Query: 240 LAELNRKLN 248
           LA L+   +
Sbjct: 340 LASLHALAD 348

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 2/108 (1%)

Query: 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM--KNYVSAEADCTASLKLDNTY 199
           L+K  +   A ++            +     A   L    +    A           +  
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199

Query: 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           +     +AA   +   +E A   + + L  +  + +  I L  L++ L
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 12/102 (11%), Positives = 26/102 (25%)

Query: 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
             K  +A   +           +    +A C +    + +AE     +L  D+ + +   
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
                 + L    +     L  L     +     E       
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 12/70 (17%)

Query: 31  AKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90
           A V++K L              G  ++V+ +  + + G  ++ +  +H            
Sbjct: 14  ASVVAKQLLN------------GQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKT 61

Query: 91  AWQLHEIDPT 100
               H   P+
Sbjct: 62  RGPFHFRAPS 71

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 12/70 (17%)

Query: 31  AKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90
           A  ++K L              G+ V+++N+    + G      + +        ++   
Sbjct: 15  ASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62

Query: 91  AWQLHEIDPT 100
               +     
Sbjct: 63  RGPFYPKRSD 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
           P D       A   LK  N   A A     ++ D  YV  Y         L+  +DA   
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 223 ILKVLALEPN--NKQAEIELAELNRKL 247
             + + +      ++   EL +   K 
Sbjct: 64  YAQGIEVAREEGTQKDLSELQDAKLKA 90

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 12/84 (14%)

Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
             + DAK       A  ++K L              G  ++V+ +  I + G  ++ R  
Sbjct: 5   LVVIDAKGHLLGRLASYVAKELLS------------GQRIVVVRTEAINISGSLFRNRVK 52

Query: 77  FHHTGYPGGVSWTLAWQLHEIDPT 100
           F                 H   P+
Sbjct: 53  FSEFLNKWMNHNPRRGVQHFRAPS 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKL 195
           +   +L+ +G    A++     +QT P      +      + K+ ++  A  +  ++++L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 196 DNTYVKAYQRR 206
           +        R+
Sbjct: 65  NPDSPALQARK 75

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.8 bits (97), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           GN   K+G + EAIE Y  A++  P++A  + N    + K  +Y  A      +L+LD  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 199 YVKAY 203
             +A 
Sbjct: 76  NAEAK 80

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 146 GKWGEAIEKYNVAIQ---TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA 202
           G   +A+  Y  AI         A  +      F  +  Y  AEA     +K    +   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
               A    +L  +E   + +LK++A   +++
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--D 196
           G+     G++ +A       ++ +P+        A+    +  Y          +    D
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 197 NTYVKAYQR 205
           +  +++Y++
Sbjct: 94  DETIQSYKQ 102

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 11/87 (12%), Positives = 30/87 (34%)

Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
           E +      I+  P +   + +R +    +++           L  D     A+Q R   
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209

Query: 210 RRSLNHFEDARKDILKVLALEPNNKQA 236
            +    +++  + + ++L  +  N   
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSV 236

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           ++  ++   +      ++     I+  P ++  +A     +L   +Y ++      +L+L
Sbjct: 14  RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL 73

Query: 196 DNTYVKAYQRRAAARRSLN---HFEDARKDILKVLALEPNNKQA 236
                + Y   A               R  I K LAL+ N   A
Sbjct: 74  RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 3/106 (2%)

Query: 133 VYSKEQGNKLVKEGKWGEAIEKYN--VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
           V         + E +      + +  V +    + ++ +  +A+  L       +     
Sbjct: 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301

Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
             + L+ +++  Y              +A    L    L P     
Sbjct: 302 TGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	100.0
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	99.97
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	99.97
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	99.96
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	99.96
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	99.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.86
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.81
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.78
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.77
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.77
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	99.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.76
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	99.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.71
4b6a_O	199	60S ribosomal protein L16-A; large ribosomal subun	99.7
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.69
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.68
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	99.64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.62
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.62
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.6
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	99.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.57
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.57
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	99.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.55
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.54
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.49
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.49
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.48
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	99.48
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.48
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.47
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.45
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.43
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.43
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.42
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.41
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.39
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.38
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.38
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.37
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.34
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.34
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.32
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.31
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.29
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.29
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.28
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.27
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.27
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.26
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.26
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.25
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.23
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.21
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.19
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.18
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.18
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.15
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.1
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.01
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.01
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.0
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.98
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.97
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.96
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.93
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.92
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.92
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.73
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.56
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.55
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.39
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.37
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.3
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.11
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.11
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.82
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.75
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.75
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.62
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.61
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.29
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.18
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.13
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.63
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.52
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.33
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.28
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.2
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.96
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.64
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.61
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.22
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.38
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.96
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.03
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	89.88
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.62
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.4
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.96
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.64
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	85.15
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	85.14
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.8
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.63
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.17
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	84.08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	83.66
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	83.42
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.77
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	82.34
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	81.74
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	81.73
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	81.03
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	80.95
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	80.42

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=9e-34  Score=208.37  Aligned_cols=107  Identities=50%  Similarity=0.887  Sum_probs=101.6

Q ss_pred             Cchhhh-hhccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCC
Q psy6284           1 MSAYER-VKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHH   79 (270)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~   79 (270)
                      |++|.. .++|++|++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++.+|.|++|
T Consensus         1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h   80 (148)
T 2ftc_H            1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH   80 (148)
T ss_pred             CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence            777765 5999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchhhhhhhhccCcchhhhhhh
Q psy6284          80 TGYPGGVSWTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        80 t~y~~g~~~~~~~~l~~~~p~~~~~~~~  107 (270)
                      ++||+|.+..+..+++.+.|+.++....
T Consensus        81 tg~pGg~k~~~~~~~~~r~P~~ii~~aV  108 (148)
T 2ftc_H           81 TGYPGGFRQVTAAQLHLRDPVAIVKLAI  108 (148)
T ss_pred             eCCcCCceeccHHHHhhcCHHHHHHHHH
Confidence            9999999998899999999999887665

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...

Probab=99.97  E-value=2.6e-31  Score=193.18  Aligned_cols=96  Identities=25%  Similarity=0.407  Sum_probs=92.6

Q ss_pred             cccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhh
Q psy6284          12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLA   91 (270)
Q Consensus        12 ~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~   91 (270)
                      ++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.+||++++++.|++||+||+|.+..++
T Consensus         8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~   87 (140)
T 3v2d_N            8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL   87 (140)
T ss_dssp             CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEH
T ss_pred             cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCcchhhhhhh
Q psy6284          92 WQLHEIDPTLDKACEE  107 (270)
Q Consensus        92 ~~l~~~~p~~~~~~~~  107 (270)
                      .+++.+.|+.++....
T Consensus        88 ~~~~~r~P~~ii~~aV  103 (140)
T 3v2d_N           88 EKMLATHPERVLEHAV  103 (140)
T ss_dssp             HHHHHHCTHHHHHHHH
T ss_pred             HHhhhhCHHHHHHHHH
Confidence            9999999999987655

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...

Probab=99.97  E-value=5.9e-31  Score=191.77  Aligned_cols=99  Identities=28%  Similarity=0.440  Sum_probs=94.0

Q ss_pred             ccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch
Q psy6284           9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW   88 (270)
Q Consensus         9 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~   88 (270)
                      ...++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++++|.|++|++||+|.+.
T Consensus         7 ~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~   86 (142)
T 3r8s_J            7 KPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQ   86 (142)
T ss_dssp             CTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEEC
T ss_pred             ChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCcchhhhhhh
Q psy6284          89 TLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        89 ~~~~~l~~~~p~~~~~~~~  107 (270)
                      .++.+++.+.|+.++....
T Consensus        87 ~~~~~~~~r~P~~ii~~aV  105 (142)
T 3r8s_J           87 ATFEEMIARRPERVIEIAV  105 (142)
T ss_dssp             CBHHHHHHHCSHHHHHHHH
T ss_pred             cCHHHHHhhCHHHHHHHHH
Confidence            9999999999999887654

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N

Probab=99.96  E-value=7.4e-31  Score=194.09  Aligned_cols=96  Identities=25%  Similarity=0.407  Sum_probs=92.7

Q ss_pred             cccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhh
Q psy6284          12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLA   91 (270)
Q Consensus        12 ~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~   91 (270)
                      ++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||+++++|.|++||+||+|.+..+.
T Consensus        31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~  110 (163)
T 3f1f_N           31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL  110 (163)
T ss_dssp             CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEH
T ss_pred             cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeeh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCcchhhhhhh
Q psy6284          92 WQLHEIDPTLDKACEE  107 (270)
Q Consensus        92 ~~l~~~~p~~~~~~~~  107 (270)
                      .+++.+.|+.++....
T Consensus       111 ~~~~~r~P~~Ii~~AV  126 (163)
T 3f1f_N          111 EKMLATHPERVLEHAV  126 (163)
T ss_dssp             HHHHHSSCHHHHHHHH
T ss_pred             HHhhhcCHHHHHHHHH
Confidence            9999999999987665

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K

Probab=99.96  E-value=2.4e-30  Score=193.70  Aligned_cols=95  Identities=26%  Similarity=0.388  Sum_probs=91.5

Q ss_pred             ccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhh
Q psy6284          13 FARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAW   92 (270)
Q Consensus        13 ~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~   92 (270)
                      +++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++++|.|++|++||||.+..++.
T Consensus        37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~  116 (174)
T 2zjr_G           37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAR  116 (174)
T ss_dssp             SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEES
T ss_pred             ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCcchhhhhhh
Q psy6284          93 QLHEIDPTLDKACEE  107 (270)
Q Consensus        93 ~l~~~~p~~~~~~~~  107 (270)
                      +++.+.|+.++....
T Consensus       117 ~~~~r~P~~Ii~~AV  131 (174)
T 2zjr_G          117 EALSKHPERVIEHAV  131 (174)
T ss_dssp             TTTTSCHHHHHHHHH
T ss_pred             HHhhcChHHHHHHHH
Confidence            999999999887665

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.95  E-value=2e-29  Score=196.71  Aligned_cols=100  Identities=26%  Similarity=0.336  Sum_probs=90.1

Q ss_pred             hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284           8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS   87 (270)
Q Consensus         8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~   87 (270)
                      .+|.++.+.||||||+|++|||+|+.||+.|+|||||+|||++|+||+|||+||+++.++|.++.+|.|++|++||||.+
T Consensus       105 ~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK  184 (250)
T 3bbo_L          105 ADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLK  184 (250)
T ss_dssp             -------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCC
T ss_pred             hhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEEecCcCCCcc
Confidence            45556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCcchhhhhhh
Q psy6284          88 WTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        88 ~~~~~~l~~~~p~~~~~~~~  107 (270)
                      ..++.+++.+.|+.++....
T Consensus       185 ~~t~~~l~~r~PerIi~kAV  204 (250)
T 3bbo_L          185 EETFDQLQKRIPERIIEHAV  204 (250)
T ss_dssp             BCCHHHHTTSCTTHHHHHHH
T ss_pred             cccHHHhhhcChHHHHHHHH
Confidence            99999999999999887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.92  E-value=8.5e-24  Score=155.99  Aligned_cols=115  Identities=28%  Similarity=0.558  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      +.++.++++|+.+++.|+|++|+..|+++++++|.++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+++|.+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      +..+|++++|+++|+++++++|++..++..++.|+
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999998874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.87  E-value=4.7e-22  Score=150.58  Aligned_cols=121  Identities=16%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-------DAV-----FFANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      .....+..+++.|+.+++.|+|++|+..|+++|+++|+       +..     +|+|+|.|+..+|+|++|+.+|+++|.
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999       444     999999999999999999999999999


Q ss_pred             c-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         195 L-------DNTYVKAY----QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       195 ~-------~p~~~~a~----~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      +       +|++.++|    +++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus        86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            9       99999999    99999999999999999999999999999998888888776554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.86  E-value=2.2e-21  Score=148.69  Aligned_cols=129  Identities=24%  Similarity=0.352  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT------------------YPHDAVFFANRALCFLKMKNYVSAEAD  188 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~  188 (270)
                      +++..+..+++.|+.+++.|+|++|+..|.+++.+                  +|.+..+++++|.|++.+|++++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            45567788999999999999999999999999999                  677779999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCCCCcch
Q psy6284         189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++ .+...+..+...++...+..+
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k  153 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR  153 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 788899999887766544433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.5e-20  Score=135.20  Aligned_cols=117  Identities=21%  Similarity=0.406  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..++..|..+++.|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q psy6284         211 RSLNHFEDARKDILKVLALE------PNNKQAEIELAELNRKL  247 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~~~~  247 (270)
                      ..+|++++|+..|+++++++      |++..++..+..+..++
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999      99999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=4.6e-20  Score=139.94  Aligned_cols=119  Identities=12%  Similarity=-0.053  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ....++..|..+++.|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  109 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL  109 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         211 RSLNHFEDARKD-ILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       211 ~~~g~~~~A~~~-~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus       110 ~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          110 CKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999887776 599999999999999999999887775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.84  E-value=1.1e-19  Score=133.85  Aligned_cols=114  Identities=21%  Similarity=0.304  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-------VK  201 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  201 (270)
                      .+.+..+++.|+.+++.|+|++|+.+|+++|+++|+++.+|+++|.||..+|++++|+.+|++++.++|.+       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999998865       46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL  243 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~  243 (270)
                      +++++|.++..+|++++|++.|++++..+|+ +.....+..+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            8999999999999999999999999999885 5555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=3.9e-19  Score=134.98  Aligned_cols=104  Identities=10%  Similarity=0.002  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..++..|..+++.|+|++|+..|++++.++|.++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+++|.++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~  234 (270)
                      ..+|++++|+..|+++++++|+.+
T Consensus       115 ~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.83  E-value=3.5e-19  Score=140.84  Aligned_cols=141  Identities=28%  Similarity=0.347  Sum_probs=127.6

Q ss_pred             CcccccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHH
Q psy6284         114 DEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----------------VFFANRALCFL  177 (270)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----------------~~~~~~a~~~~  177 (270)
                      .+.....+.+...+....+..+...|..++..|+|++|+..|.+++.+.|.++                .+++++|.|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   99 (198)
T 2fbn_A           20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN   99 (198)
T ss_dssp             --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566667778888999999999999999999999999999999987                89999999999


Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284         178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI  254 (270)
Q Consensus       178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  254 (270)
                      .+|++++|+.+|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus       100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888766655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=5.6e-20  Score=157.72  Aligned_cols=132  Identities=32%  Similarity=0.487  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHHHHHHH
Q psy6284         124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYVSAEAD  188 (270)
Q Consensus       124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~  188 (270)
                      ........+..++..|+.+++.|+|++|+..|++++.++|.+               ..+++++|.|++.+|++++|+.+
T Consensus       139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  218 (336)
T 1p5q_A          139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES  218 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334456778889999999999999999999999999999999               69999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+|+..++..
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998876633

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=3.6e-19  Score=166.55  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+.+.|..+.+.|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|++.|+++++++|++..++.+++.++..+|+..+++.
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            77777777777777777777777777777777777777666655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.81  E-value=3.8e-20  Score=140.37  Aligned_cols=127  Identities=14%  Similarity=0.034  Sum_probs=116.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE  217 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  217 (270)
                      .|..+..+|++++|+..|.+++..+|.++.+++++|.+|+.+|++++|+..|++++.++|+++.+|+.+|.++..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            47788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch----HhhhcCCCc
Q psy6284         218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK----VDFLHNPYH  264 (270)
Q Consensus       218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~----~~~~~~~~~  264 (270)
                      +|+..|+++++++|+++.++..++.++..+|+..+++.    +.+..+|.+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999999999988764    456666654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.81  E-value=4.6e-20  Score=164.64  Aligned_cols=134  Identities=29%  Similarity=0.467  Sum_probs=120.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q psy6284         122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYVSAE  186 (270)
Q Consensus       122 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~  186 (270)
                      .+........+..++..|+.+++.|+|++|+..|+++++++|.+               ..+|+|+|.|+++++++++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34444566788899999999999999999999999999999998               689999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         187 ADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       187 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++.++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.+
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988766544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.81  E-value=1.2e-18  Score=133.65  Aligned_cols=118  Identities=23%  Similarity=0.367  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..++..|..++..|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|++..+|+.+|.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHhC
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIE--LAELNRKLN  248 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~--l~~~~~~~~  248 (270)
                      ..+|++++|+.+|+++++++|++..++..  +..+..+++
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  129 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE  129 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999885544  444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.80  E-value=2.4e-18  Score=130.17  Aligned_cols=117  Identities=13%  Similarity=0.056  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ....+...|..++..|+|++|+..|++++..+|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      ..+|++++|+..|+++++++|+++........+...+
T Consensus       100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  136 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML  136 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence            9999999999999999999999876655555554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=2.2e-18  Score=129.16  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..++..|+|++|+..|++++..+|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            44677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      .+|++++|+..|+++++++|+++........+...+
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999887777666665544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.79  E-value=2.3e-18  Score=150.13  Aligned_cols=122  Identities=11%  Similarity=0.034  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      .+...|..+...|++++|+..|+++|.++|.+..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.+|.++..
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            445555555666666666666666666666666666666666666664 6666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +|++++|+.+|+++|+++|++..+|..++.++..+|++.+++.
T Consensus       179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence            6666666666666666666666666666666666666555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=2.4e-18  Score=137.41  Aligned_cols=118  Identities=19%  Similarity=0.143  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhc
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFAN----------------RALCFLKMKNYVSAEADCTASLKL  195 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~  195 (270)
                      +..+..+|..++..|+|++|+..|+++++.+|+++.+++.                +|.++..+|++++|+..|++++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4467888999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       196 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999998865543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=1.8e-18  Score=138.99  Aligned_cols=131  Identities=15%  Similarity=0.093  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcCCCCH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-----------KNYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~  200 (270)
                      +..+...|..+...|++++|+..|+++++++|+++.+++++|.++..+           |++++|+..+++++.++|++.
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            556778888888888888888888888888888888888888888888           888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      .+++.+|.++..+|++++|+..|+++++++ +++.++..++.++..+|++.+++.   ..+..+|.
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            888888888888888888888888888888 888888888888888888887766   44445554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=5.1e-18  Score=132.09  Aligned_cols=129  Identities=14%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH------------------------------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV------------------------------  183 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~------------------------------  183 (270)
                      .+.+.|..++..|+|++|+..|+++++++|+++.++.++|.++..+|+++                              
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI   86 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence            45566666666666666666666666666666666666666665555555                              


Q ss_pred             ----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---H
Q psy6284         184 ----SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---V  256 (270)
Q Consensus       184 ----~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~  256 (270)
                          .|+..+.+++.++|.+..+++.+|.++..+|++++|++.|+++++++|++..++..++.++..+|++.+|+.   +
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                455555555556666677777788888888888888888888888888888888888888888888777766   4


Q ss_pred             hhhcCC
Q psy6284         257 DFLHNP  262 (270)
Q Consensus       257 ~~~~~~  262 (270)
                      .+-.+|
T Consensus       167 al~~~p  172 (184)
T 3vtx_A          167 ALEKEE  172 (184)
T ss_dssp             HHHTTH
T ss_pred             HHhCCc
Confidence            444444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.78  E-value=2.9e-17  Score=119.43  Aligned_cols=121  Identities=35%  Similarity=0.479  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+..+...|..++..|++++|+..|.+++...|.++.++.++|.++..+|++++|+..+++++..+|.+..+++.+|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +..+|++++|+..|+++++++|++..++..++.++..+|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=6.5e-18  Score=158.11  Aligned_cols=135  Identities=16%  Similarity=0.224  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+..+.+.|+.+.+.|++++|+..|+++|+++|++..+++++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +..+|++++|++.|+++++++|++..++.+++.++..+|++.+|+.   +.+..+|..
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999987   566666643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=7.2e-18  Score=135.48  Aligned_cols=123  Identities=16%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284         132 AVYSKEQGNKLVKE-----------GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       132 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  200 (270)
                      +..+...|..+...           |++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.++ +++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~  151 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP  151 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence            55688899999999           999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus       152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.78  E-value=9.5e-18  Score=122.77  Aligned_cols=118  Identities=29%  Similarity=0.501  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...++..|..++..|+|++|+..|+++++.+|.+..+++++|.++..++++++|+..+++++.++|.+..+++.+|.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      .+|++++|+..|+++++++|++..++..++.++..+|+
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.78  E-value=9.9e-18  Score=135.01  Aligned_cols=131  Identities=17%  Similarity=0.165  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ..++..|..++..|+|++|+..|+++++++| .+..+++++|.|+..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            4688899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNK-------QAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      .+|++++|+..|+++++++|+++       .++..++.++..+|++.+|+.   ..+..+|.
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999       779999999999999998887   44444553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.77  E-value=1.5e-19  Score=155.22  Aligned_cols=132  Identities=30%  Similarity=0.402  Sum_probs=103.0

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHccC
Q psy6284         119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----------------VFFANRALCFLKMKN  181 (270)
Q Consensus       119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~  181 (270)
                      ..+.+...+++..+..++..|+.+++.|+|++|+..|.+++.+.|.+.                 .+++++|.|++.+++
T Consensus       166 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~  245 (338)
T 2if4_A          166 ARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR  245 (338)
T ss_dssp             TTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344555567788889999999999999999999999999999999887                 499999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +++|+.+|++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+.......
T Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.77  E-value=4e-17  Score=116.61  Aligned_cols=115  Identities=32%  Similarity=0.467  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|.+++...|.++.+++++|.++..+|++++|+..+++++..+|.+..+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      ..+|++++|+..|+++++++|++..++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999988754

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...

Probab=99.76  E-value=5.3e-20  Score=134.98  Aligned_cols=81  Identities=15%  Similarity=-0.054  Sum_probs=73.8

Q ss_pred             ccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhh
Q psy6284          11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL   90 (270)
Q Consensus        11 ~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~   90 (270)
                      +.+.+.|+||||+|++|||+|+.||+.|+            +||+|+|+||+++.+||+++.+|.|++|++||++    +
T Consensus         3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~   66 (145)
T 1vq8_J            3 VAEFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----D   66 (145)
T ss_dssp             -CCCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----S
T ss_pred             ccccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----C
Confidence            34678899999999999999999999999            9999999999999999999999999999999997    5


Q ss_pred             hhhhhccCcchhhhhhh
Q psy6284          91 AWQLHEIDPTLDKACEE  107 (270)
Q Consensus        91 ~~~l~~~~p~~~~~~~~  107 (270)
                      ..+++.+.|+.++....
T Consensus        67 ~~~~~~r~P~~i~~~aV   83 (145)
T 1vq8_J           67 NGYFYPKRPDGIFKRTI   83 (145)
T ss_dssp             SCCCCCCSHHHHHHHHH
T ss_pred             HHHHhhcChHHHHHHHH
Confidence            67888899988887554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.76  E-value=7.1e-18  Score=146.49  Aligned_cols=131  Identities=26%  Similarity=0.393  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy6284         125 DLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ----------------TYPHDAVFFANRALCFLKMKNYVSAEAD  188 (270)
Q Consensus       125 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~  188 (270)
                      ..+....+..++..|+.+++.|+|++|+..|+++++                .+|.+..+++++|.|+++++++++|+.+
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            345667788899999999999999999999999999                7778889999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++.++|++.++++++|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.+
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998877655443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.76  E-value=2.5e-17  Score=121.67  Aligned_cols=117  Identities=32%  Similarity=0.436  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|+|++|+..|.+++..+|.++.+++++|.|+..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhC
Q psy6284         212 SLNHFEDARKDILKVLALEPN-----NKQAEIELAELNRKLN  248 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~~~~~  248 (270)
                      .+|++++|+..|+++++++|+     +..+...+..+..+..
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999     8888888888876543

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1

Probab=99.76  E-value=1.2e-19  Score=133.24  Aligned_cols=78  Identities=12%  Similarity=-0.027  Sum_probs=63.0

Q ss_pred             EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch-hhhhhhh
Q psy6284          17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW-TLAWQLH   95 (270)
Q Consensus        17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~-~~~~~l~   95 (270)
                      |+||||+|++|||+|+.||+.|+            +||+|||+||+++.+||+++.+|.|++|++||+|... .+ .+++
T Consensus         1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~   67 (142)
T 1j3a_A            1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY   67 (142)
T ss_dssp             CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred             CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence            99999999999999999999999            9999999999999999999999999999999999665 55 7888


Q ss_pred             ccCcchhhhhhh
Q psy6284          96 EIDPTLDKACEE  107 (270)
Q Consensus        96 ~~~p~~~~~~~~  107 (270)
                      .+.|+.++....
T Consensus        68 ~r~P~~ii~~aV   79 (142)
T 1j3a_A           68 PKRSDEIVRRTI   79 (142)
T ss_dssp             CCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHH
Confidence            999998887554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.76  E-value=3.1e-17  Score=124.76  Aligned_cols=129  Identities=31%  Similarity=0.478  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      +....+..+...|..++..|+|++|+..|.+++...|.+..+++++|.++..+|++++|+..+++++.++|.+..+++.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCCCCcch
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL--NRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~~~~a~~  255 (270)
                      |.++..+|++++|+..|+++++++|++..++..++.+  +...|++.+++.
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999666666  666677777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.76  E-value=1e-17  Score=122.26  Aligned_cols=101  Identities=16%  Similarity=0.103  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      ++..|..++..|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            56679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHH
Q psy6284         215 HFEDARKDILKVLALEPNNKQ  235 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~  235 (270)
                      ++++|+..|+++++++|++..
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=1.4e-17  Score=145.20  Aligned_cols=134  Identities=10%  Similarity=0.011  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGK-WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      .+..+..+|..+...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|.+..+|+.+|.+
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~  209 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV  209 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence            36678999999999997 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC-CCcc-----h---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP-LSPI-----K---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~-~~a~-----~---~~~~~~~~~  264 (270)
                      +..+|++++|+.+|+++|+++|++..+|..++.++..++.. .+++     .   ..+..+|.+
T Consensus       210 ~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~  273 (382)
T 2h6f_A          210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN  273 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999995444 6663     2   555556643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.75  E-value=8e-17  Score=125.26  Aligned_cols=103  Identities=18%  Similarity=0.101  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..+...++++.|+..+.+++..+|.+..++..+|.++..+|++++|+..|++++.++|.++.+++.+|.++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH
Q psy6284         212 SLNHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~  234 (270)
                      .+|++++|+..|+++++++|+++
T Consensus       153 ~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhCCccCH
Confidence            99999999999999999999764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=119.58  Aligned_cols=115  Identities=31%  Similarity=0.490  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      +..++..|..++..|+|++|+..|+++++..|++   ..+++++|.++..++++++|+..|++++.++|.+..+++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            3467888999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ++..+|++++|+..|+++++++|++..++..+..+...
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999999999999999998887643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=1.5e-18  Score=131.72  Aligned_cols=110  Identities=15%  Similarity=0.015  Sum_probs=103.0

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      ..|++++.++|+++.+++++|.+++.+|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284         233 NKQAEIELAELNRKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       233 ~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~  262 (270)
                      ++.++..++.++..+|++.+|+.   +.+...|
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999887   4444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.73  E-value=6.2e-16  Score=111.35  Aligned_cols=117  Identities=27%  Similarity=0.349  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      ..|++++|+..|+++++++|++..++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.72  E-value=4.6e-16  Score=113.59  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRA  207 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g  207 (270)
                      .++..|..++..|+|++|+..|.++++..|+++   .+++++|.++..+|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            357789999999999999999999999999998   799999999999999999999999999999999   89999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .++..+|++++|+..|+++++..|+++.+...+..+....+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998888877765443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=2.6e-17  Score=121.01  Aligned_cols=108  Identities=19%  Similarity=0.121  Sum_probs=99.8

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         157 VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       157 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                      ++..++|+...++.++|.++++.|+|++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         237 EIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       237 ~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +..++.++..+|++.+|+.   ..+..+|..
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999988   666667754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.72  E-value=2.8e-16  Score=114.26  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-------VKAY  203 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~  203 (270)
                      .+..+...|..++..|++++|+..|.+++...|.++.+++++|.++..+|++++|+..+++++.+.|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            356788899999999999999999999999999999999999999999999999999999999998877       9999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +.+|.++..+|++++|+..|+++++++| ++.+...++.+...+++.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999 699999999988776543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.71  E-value=4.6e-17  Score=122.95  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=93.4

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY----------VSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      .+.|++|+..|+++++++|.++.+|+++|.++..++++          ++|+..|+++|+++|++..+|+++|.+|..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            35689999999999999999999999999999999876          59999999999999999999999999999885


Q ss_pred             -----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         215 -----------HFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       215 -----------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                                 ++++|+++|++|++++|++...+..+..+.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                       899999999999999999999988887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.70  E-value=1.5e-16  Score=127.97  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------HHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-------KAYQRR  206 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~~~~  206 (270)
                      .+...|..++..|++++|+..|.++++.+|.+..++.++|.++..+|++++|+..+++++.++|++.       .+++.+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  123 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE  123 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            5666899999999999999999999999999999999999999999999999999999999999999       779999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCC
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPN--NKQAEIELAELNRKLNIP  250 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~~~~  250 (270)
                      |.++..+|++++|+..|+++++++|+  +..++..++.++...|+.
T Consensus       124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999  999999999999888776

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.69  E-value=5.4e-16  Score=123.16  Aligned_cols=121  Identities=19%  Similarity=0.202  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..++..|..++..|+|++|+..|.+++  +| ++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3456667777777777777777777764  22 56677777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNK----------------QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|+..|++++++.|++.                .++..++.++..+|++.+++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence            77777777777777777666665                777777777777777766655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.69  E-value=1.2e-15  Score=111.00  Aligned_cols=122  Identities=25%  Similarity=0.266  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL  213 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  213 (270)
                      .+...|..++..|++++|+..|.+++...|.+..++.++|.++...+++++|+..+++++...|.+..+++.+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |++++|+..|+++++.+|.+..++..++.++...|++.++..
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  124 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE  124 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence            999999999999999999999999999999999999888766

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.68  E-value=6.7e-17  Score=144.89  Aligned_cols=125  Identities=32%  Similarity=0.489  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..+++.|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|++++.++|++..+++++|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34456677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAEL--NRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~~~~a~~  255 (270)
                      ..+|++++|++.|+++++++|++..++..++.+  +...|++.+|+.
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999998  777788887776

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.67  E-value=1.5e-16  Score=114.96  Aligned_cols=107  Identities=17%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQT---YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR  220 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  220 (270)
                      ..|++++|+..|++++++   +|+++.+++++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            368999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      ..|++++..+|+++.+......+....+..
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999887777666555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.67  E-value=5.8e-16  Score=127.35  Aligned_cols=132  Identities=17%  Similarity=0.133  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~  205 (270)
                      +..++..|..+++.|+|++|+..|+++++..|.+   +.+++++|.|++.+|++++|+..|++++.+.|++   ..+++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            4468889999999999999999999999999999   8999999999999999999999999999998854   679999


Q ss_pred             HHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCCCCcch---Hh
Q psy6284         206 RAAARRS--------LNHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIPLSPIK---VD  257 (270)
Q Consensus       206 ~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~~~a~~---~~  257 (270)
                      +|.++..        +|++++|+..|+++++.+|++..+.                 ..++.++...|++.+|+.   ..
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999        9999999999999999999997776                 788999999999999887   33


Q ss_pred             hhcCCC
Q psy6284         258 FLHNPY  263 (270)
Q Consensus       258 ~~~~~~  263 (270)
                      +..+|.
T Consensus       175 l~~~p~  180 (261)
T 3qky_A          175 FDAYPD  180 (261)
T ss_dssp             HHHCTT
T ss_pred             HHHCCC
Confidence            444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=7.3e-17  Score=121.93  Aligned_cols=104  Identities=11%  Similarity=-0.014  Sum_probs=100.6

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         152 IEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       152 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      -..|++++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         232 NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       232 ~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++.++..++.++..+|++.+|+.
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999998877

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.66  E-value=4.8e-15  Score=113.99  Aligned_cols=123  Identities=15%  Similarity=0.158  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..|+++++.+|++..++..++.++...|++.++..
T Consensus       123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999988876

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.66  E-value=1.6e-15  Score=126.62  Aligned_cols=102  Identities=35%  Similarity=0.504  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..++..|+.++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      .+|++++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999976

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=2.4e-15  Score=137.36  Aligned_cols=133  Identities=10%  Similarity=-0.081  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++.++|++..+++.+|.++.
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCCCCcch---HhhhcCCCc
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL---NIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~---~~~~~a~~---~~~~~~~~~  264 (270)
                      .+|++++|++.|+++++++|++..++..++.++..+   |+..++..   ..+..+|..
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999   88777766   445555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.65  E-value=2.9e-16  Score=146.64  Aligned_cols=123  Identities=15%  Similarity=0.039  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|+|++|+..|+++++.+|++..+++++|.++..+|++++|+..|++++.++|++..+++++|.++.
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++ ++.|+++++++|++..++..++.++..+|++.+|+.
T Consensus       513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999 999999999999999999999999999999988876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=8.6e-15  Score=117.96  Aligned_cols=131  Identities=13%  Similarity=0.079  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..+...|++++|+..|+++++..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~  262 (270)
                      ..|++++|+..|+++++.+|++..++..++.++..+|++.+++.   ..+..+|
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            99999999999999999999999999999999999999988876   3444444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=6.8e-15  Score=117.20  Aligned_cols=79  Identities=14%  Similarity=-0.011  Sum_probs=74.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      .+.|..++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|++++.++|+++.+++.+|.+++..|
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            4489999999999999999999999999999999999999999999999999999999999999999999998876543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=4e-15  Score=114.45  Aligned_cols=124  Identities=16%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999999999999999999988876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=1.3e-14  Score=116.91  Aligned_cols=123  Identities=11%  Similarity=0.079  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..++..|++++|+..|.++++..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++..
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999988877

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I

Probab=99.64  E-value=3.3e-17  Score=126.06  Aligned_cols=82  Identities=17%  Similarity=0.038  Sum_probs=71.1

Q ss_pred             cceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhh
Q psy6284          14 ARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQ   93 (270)
Q Consensus        14 ~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~   93 (270)
                      .+.|+||||+|++|||+|+.||+.|+            |||+|||+||+++.+||+++.++.|++|..++.+.......+
T Consensus         2 ~~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~   69 (198)
T 4a17_I            2 FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGV   69 (198)
T ss_dssp             CSSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSC
T ss_pred             CccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCcccc
Confidence            36799999999999999999999999            999999999999999999999999998876666655555567


Q ss_pred             hhccCcchhhhhhh
Q psy6284          94 LHEIDPTLDKACEE  107 (270)
Q Consensus        94 l~~~~p~~~~~~~~  107 (270)
                      ++.+.|+.++....
T Consensus        70 ~~~r~P~rIi~~AV   83 (198)
T 4a17_I           70 QHFRAPSRIFWRAV   83 (198)
T ss_dssp             CCCCSHHHHHHHHH
T ss_pred             ccccCHHHHHHHHH
Confidence            77788888876554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.3e-15  Score=120.59  Aligned_cols=124  Identities=23%  Similarity=0.215  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ--------------------------TYPHDAVFFANRALCFLKMKNYVSA  185 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~A  185 (270)
                      +..+...|..+...|++++|+..|++++.                          .+|.++.++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            56788889999999999999999999999                          5666778999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         186 EADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       186 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=7.4e-15  Score=127.22  Aligned_cols=132  Identities=21%  Similarity=0.183  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|++++.++|.+..+++.+|.++.
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            44566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ..|++++|+..|+++++++|++..++..++.++...|++.+++.   ..+..+|.
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            88888888888888888888888888888888888888888776   44444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.63  E-value=6.7e-15  Score=126.06  Aligned_cols=124  Identities=14%  Similarity=0.146  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|++++...|.++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNN-----------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|+..|+++++++|++           ..++..++.++..+|++.++..
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            9999999999999999999998           8999999999999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=1.5e-15  Score=135.94  Aligned_cols=123  Identities=12%  Similarity=0.109  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      +..+...|..++..|++++|+.+|+++++++|+ ..++.++|.++..+         |++++|+..|++++.++|++..+
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  215 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS  215 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            344555666666666666666666666666666 46666666666666         66666666666666666666666


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         203 YQRRAAARRSL--------NHFEDARKDILKVLALEP---NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       203 ~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |+.+|.++..+        |++++|+..|+++++++|   ++..++..++.++..+|++.+|+.
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~  279 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE  279 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666        666666666666666666   666666666666666666655554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.63  E-value=6.2e-16  Score=119.57  Aligned_cols=114  Identities=16%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC-FLKMKNY--VSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      ....+...|..++..|++++|+..|.+++.++|.++.++.++|.+ +...|++  ++|+..+++++.++|.+..+++.+|
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  122 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA  122 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            456789999999999999999999999999999999999999999 8899998  9999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      .++..+|++++|+..|+++++++|++......+..+.
T Consensus       123 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          123 SDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999876665554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=1.8e-15  Score=124.34  Aligned_cols=121  Identities=12%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQRRAAA  209 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~  209 (270)
                      .+...|..++..|+|++|+..|+++++.+|.+..+++++|.++..+|++++|+..|++++. .|.+    ..+++.+|.+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence            4566677777888888888888888887777777777788888888888888888887777 3322    4457777888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  129 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ  129 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            8888888888888888888888777788888888777777777665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=1.1e-15  Score=136.88  Aligned_cols=130  Identities=15%  Similarity=0.075  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKW-GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      +..+...|..++..|+| ++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|++++.++|+ ..+++.+|.++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            56788999999999999 99999999999999999999999999999999999999999999999999 79999999999


Q ss_pred             HHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------CCCCCcch---HhhhcCC
Q psy6284         211 RSL---------NHFEDARKDILKVLALEPNNKQAEIELAELNRKL--------NIPLSPIK---VDFLHNP  262 (270)
Q Consensus       211 ~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~--------~~~~~a~~---~~~~~~~  262 (270)
                      ..+         |++++|+..|+++++++|++..++..++.++..+        |++.+|+.   ..+..+|
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            999         9999999999999999999999999999999998        88888776   4444455

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.63  E-value=4.4e-15  Score=104.90  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRS  212 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~  212 (270)
                      +...|..++..|++++|+..|+++++..|.+..+++++|.++..+|++++|+..+++++.++|.  +..+++.+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~   88 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY   88 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            5567999999999999999999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             c-CCHHHHHHHHHHHHhhCCCCH
Q psy6284         213 L-NHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       213 ~-g~~~~A~~~~~~al~~~p~~~  234 (270)
                      + |++++|++.|++++..+|.++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           89 IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCCHHHHHHHHHHHhhcccCCC
Confidence            9 999999999999999999763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=1.4e-14  Score=118.93  Aligned_cols=124  Identities=19%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++++|+..|++++.++|.+..+++.+|.++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  121 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+|++++|+..|+++++++|++..+...+..+ ...|++.+++.
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~  165 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE  165 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence            999999999999999999999999777766655 45577666655

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=1.7e-14  Score=114.54  Aligned_cols=124  Identities=15%  Similarity=-0.011  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-KNYVSAEADCTASLK--LDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~a~~~~g~  208 (270)
                      ...+...|..+...|++++|+..|.+++...|.+..++.++|.++... |++++|+..+++++.  .+|.+..+++.+|.
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  121 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI  121 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence            456777888888899999999999999998888888899999999999 999999999999888  66677888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++...|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus       122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999888888888766

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.62  E-value=9.3e-15  Score=117.74  Aligned_cols=132  Identities=11%  Similarity=-0.010  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------ccCHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---FFANRALCFLK------------------MKNYVSAEADCTA  191 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~  191 (270)
                      ..++..|..+++.|+|++|+..|+++++..|+++.   +++.+|.++..                  +|++++|+..|++
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            46788899999999999999999999999999864   89999999986                  5789999999999


Q ss_pred             HHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCC
Q psy6284         192 SLKLDNTYVKAY-----------------QRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAELNRKLNIPL  251 (270)
Q Consensus       192 al~~~p~~~~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~~~  251 (270)
                      ++..+|++..++                 +.+|.++...|++++|+..|+++++..|+++   .++..++.++.++|+..
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            999999987654                 6789999999999999999999999999986   78999999999999999


Q ss_pred             Ccch--HhhhcCCCc
Q psy6284         252 SPIK--VDFLHNPYH  264 (270)
Q Consensus       252 ~a~~--~~~~~~~~~  264 (270)
                      +++.  ..+..+++.
T Consensus       202 ~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          202 QAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHhhCCC
Confidence            9877  444444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.62  E-value=8.8e-15  Score=124.22  Aligned_cols=124  Identities=25%  Similarity=0.306  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ++.++..|..++..|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEP---NNKQAEIEL------------AELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p---~~~~a~~~l------------~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|+..|+++++++|   ++..++..+            +.++...|++.+++.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  141 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT  141 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999   999999888            678888888888776

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=9.2e-15  Score=126.62  Aligned_cols=120  Identities=15%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      +...|..+...|++++|+..|+++++++|++..++.++|.++...+++++|+..+++++.++|++..+++.+|.++...|
T Consensus       172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  251 (388)
T 1w3b_A          172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence            44445555555555555555555555555544444444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284         215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI  254 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~  254 (270)
                      ++++|+..|+++++++|+++.++..++.++...|++.+++
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  291 (388)
T 1w3b_A          252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4444444444444444444444444444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=1.4e-14  Score=111.96  Aligned_cols=127  Identities=17%  Similarity=0.120  Sum_probs=112.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH-
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRSLNHF-  216 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-~~~~g~~-  216 (270)
                      +..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.+ +...|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999 8899999 


Q ss_pred             -HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284         217 -EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       217 -~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                       ++|+..|+++++++|++..++..++.++...|++.+|+.   ..+..+|...
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence             999999999999999999999999999999999998877   5555666543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.62  E-value=5.5e-15  Score=119.11  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR  205 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~  205 (270)
                      +..++..|..++..|+|++|+..|+++++..|.++   .+++++|.+++.+|++++|+..|++++..+|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34678899999999999999999999999999874   79999999999999999999999999999998864   8999


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCC
Q psy6284         206 RAAARRS------------------LNHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIP  250 (270)
Q Consensus       206 ~g~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~  250 (270)
                      +|.++..                  .|++++|+..|+++++.+|++..+.                 ..++.++...|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9999886                  5799999999999999999998665                 4677788889999


Q ss_pred             CCcch
Q psy6284         251 LSPIK  255 (270)
Q Consensus       251 ~~a~~  255 (270)
                      .+++.
T Consensus       164 ~~A~~  168 (225)
T 2yhc_A          164 VAVVN  168 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88877

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=1.3e-14  Score=121.54  Aligned_cols=124  Identities=14%  Similarity=0.059  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH-----------------------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD-----------------------  188 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-----------------------  188 (270)
                      ...+...|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..                       
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            446788899999999999999999999999999999999999999999998887644                       


Q ss_pred             -----------HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284         189 -----------CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       189 -----------~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                 +++++..+|++..+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++..+|+..+++.
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS  276 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence                       455577788999999999999999999999999999999999988  8899999999999998877665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.61  E-value=4.5e-15  Score=127.44  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=110.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH  215 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  215 (270)
                      .|..+...|++++|+..|++++...|.  ++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            488899999999999999999999999  899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999999999998877

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.61  E-value=9e-15  Score=113.24  Aligned_cols=124  Identities=10%  Similarity=0.019  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFL-KMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ....+...|..+...|++++|+..|++++...| ++..+..++.+.+ ..++..+|+..+++++.++|+++.+++.+|.+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~  117 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ  117 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            455667777777777777777777777777777 6665555553322 22344456788888888899999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...|++++|+..|+++++++|+.  ..++..++.++..+|+..+++.
T Consensus       118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A          118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            999999999999999999999875  5699999999999999887765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=7.7e-16  Score=115.10  Aligned_cols=103  Identities=14%  Similarity=0.022  Sum_probs=96.9

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      ..|.+++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         233 NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       233 ~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++.++..++.++..+|++.+++.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999988877

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.61  E-value=2.4e-14  Score=117.59  Aligned_cols=123  Identities=19%  Similarity=0.144  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..+...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..+++++.++|.+..+++.+|...+.
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999955555


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---CCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI---PLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~---~~~a~~  255 (270)
                      .+++++|+..|+++++++|++..++..++.++..+|+   +.+++.
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~  200 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP  200 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence            6699999999999999999999999999999999998   666655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=2.6e-14  Score=116.08  Aligned_cols=122  Identities=16%  Similarity=0.109  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--LDNTYVKAYQRRAAARR  211 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~  211 (270)
                      .+...|..++..|++++|+..|.++++..|.+..++.++|.++..+|++++|+..+++++.  .+|.+..+++.+|.++.
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            4445555555666666666666666665555555556666666666666666666666555  55555555555666665


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666666666555555555555555555555444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.1e-14  Score=116.41  Aligned_cols=114  Identities=22%  Similarity=0.414  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKVLALE------PNNKQAEIELAELN  244 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~  244 (270)
                      ..+|++++|+..|+++++++      |++..++..+..++
T Consensus       218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            99999999999999999999      99999998887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.61  E-value=3.5e-14  Score=112.56  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------------
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV------------  200 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------  200 (270)
                      ..+...|..++..|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|++++.+.|.+.            
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  117 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  117 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence            46888999999999999999999999999999999999999999999999999999999999888776            


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         201 ----KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       201 ----~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                          .+++.+|.++..+|++++|+..|+++++++|++.......+
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence                99999999999999999999999999999998765444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.60  E-value=1.7e-14  Score=123.86  Aligned_cols=132  Identities=11%  Similarity=0.002  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN--------------  197 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------------  197 (270)
                      +..+...|..++..|++++|+..|+++++++|.+..++.++|.++..+|++++|+..|++++.++|              
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  178 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG  178 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence            445777788888888888888888888888888888888888888888888777777777766554              


Q ss_pred             ------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         198 ------------------------------T--YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       198 ------------------------------~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                                                    .  ++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++.
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                          4  78889999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCcch---HhhhcCCC
Q psy6284         246 KLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       246 ~~~~~~~a~~---~~~~~~~~  263 (270)
                      .+|++.+++.   ..+..+|.
T Consensus       259 ~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          259 NGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHhcCCC
Confidence            9999888877   44444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.60  E-value=2.3e-14  Score=113.84  Aligned_cols=124  Identities=18%  Similarity=0.169  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKE-GKWGEAIEKYNVAIQ--TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~-g~~~~A~~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...+...|..++.. |++++|+..|+++++  ..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A           76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            45677889999999 999999999999999  666778899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         209 ARRSLNHFEDARKDILKVLALEP-NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++...|++++|+..|+++++++| ++..++..+..++...|+..++..
T Consensus       156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            99999999999999999999999 999999988888888888776655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=1.5e-14  Score=117.52  Aligned_cols=124  Identities=15%  Similarity=0.144  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            55788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLA--LEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|+..|+++++  .+|.+..++..++.++...|++.+++.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999  899999999999999999999988876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.60  E-value=8.4e-15  Score=120.33  Aligned_cols=117  Identities=15%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhcCCCCH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLK--------MKNYVSAEADCTASLKLDNTYV  200 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~  200 (270)
                      ...++..|..++..|+|++|+..|+++++..|++   +.+++++|.|+..        +|++++|+..|++++..+|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            3468889999999999999999999999998865   6789999999999        9999999999999999999886


Q ss_pred             HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhC
Q psy6284         201 KAY-----------------QRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIELAELNRKLN  248 (270)
Q Consensus       201 ~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~  248 (270)
                      .+.                 +.+|.++..+|++++|+..|+++++.+|+   ...++..++.++..+|
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            666                 88999999999999999999999999998   5679999999999883

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.58  E-value=3.9e-14  Score=118.92  Aligned_cols=124  Identities=14%  Similarity=0.145  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..++..|++++|+..|.+++...|.++.++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPN------------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~------------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|+..|+++++++|+            +..++..++.++..+|++.++..
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999            89999999999999999876655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.58  E-value=3e-14  Score=119.76  Aligned_cols=123  Identities=12%  Similarity=0.085  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---------CCCHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD---------NTYVKAY  203 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~  203 (270)
                      ..+...|..+...|++++|+..|+++++..|.++.++.++|.++..+|++++|+..+++++.+.         |.+..++
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  239 (330)
T 3hym_B          160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL  239 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence            3455678888888888888888888888888888888888888888888888888888888775         6667788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus       240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (330)
T 3hym_B          240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD  291 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence            8888888888888888888888888888888888888888888888877766

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.57  E-value=4.5e-14  Score=118.68  Aligned_cols=124  Identities=13%  Similarity=-0.058  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ...+...|..++..| ++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.+.|.+..+++.+|.++
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  169 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY  169 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            456788999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus       170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            999999999999999999999999999999999999999988876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.57  E-value=6.8e-14  Score=123.10  Aligned_cols=125  Identities=23%  Similarity=0.303  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..+++.|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            45578888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNK---QAEIEL------------AELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l------------~~~~~~~~~~~~a~~  255 (270)
                      ..+|++++|+..|+++++++|++.   .++..+            +.++...|++.+++.
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999998   887766            555888888877766

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.57  E-value=1e-13  Score=116.29  Aligned_cols=133  Identities=12%  Similarity=-0.012  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC--FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ...+...|..+.+.|++++|+..|+++++.+|++.......+.+  +...|++++|+..|++++..+|+++.+++.+|.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~  209 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC  209 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45677889999999999999999999999999986544444432  3345899999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch----HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK----VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~----~~~~~~~~~  264 (270)
                      +..+|++++|+..|+++++++|+++.++.+++.++..+|+..++..    +-+..+|.+
T Consensus       210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999876432    344455543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=3.3e-14  Score=132.75  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=114.1

Q ss_pred             HHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         143 VKEGKWGEAIEKYNVAI--------QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      +..|++++|+..|++++        ..+|++..+++++|.++..+|++++|+..|++++.++|++..+|+.+|.++..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            78999999999999999        8999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      ++++|++.|+++++++|++..++..++.++..+|++.+ +.   ..+..+|..
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence            99999999999999999999999999999999999998 76   555566644

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.56  E-value=1.5e-15  Score=117.23  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             ccceEEEEecCCCCchhhHHHHHH-HHcCCCCCcccCCCCCCCeEEEecCceeeeecccccccccc-CCC-------CCC
Q psy6284          13 FARIWHIYDAKWQNPIESAKVISK-HLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYF-HHT-------GYP   83 (270)
Q Consensus        13 ~~~~~~~~d~~~~~~~~~~~~v~~-~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~-~~t-------~y~   83 (270)
                      ..+.|+||||+|++|||+|+.||+ +|+             ||+|||+||+++.+||.++.++.|+ +|+       +++
T Consensus         2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~   68 (203)
T 2zkr_j            2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR   68 (203)
T ss_dssp             -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred             CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence            467899999999999999999999 887             4799999999999999999999999 887       677


Q ss_pred             CCcc
Q psy6284          84 GGVS   87 (270)
Q Consensus        84 ~g~~   87 (270)
                      |+..
T Consensus        69 G~~~   72 (203)
T 2zkr_j           69 GPYD   72 (203)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.55  E-value=9.2e-14  Score=99.65  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       150 ~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      .|+..|.++++.+|+++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHHhCC
Q psy6284         230 EP--NNKQAEIELAELNRKLNI  249 (270)
Q Consensus       230 ~p--~~~~a~~~l~~~~~~~~~  249 (270)
                      +|  .+..+...+...+..+++
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhcc
Confidence            98  456777777777666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.55  E-value=3.4e-14  Score=119.04  Aligned_cols=134  Identities=13%  Similarity=0.042  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC----
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKM-KNYVSAEADCTASLKLDNTY----  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~----  199 (270)
                      .+..+.+.|..+...|++++|+.+|++++.+.|..      ..++.++|.+|..+ |++++|+.+|++++.+.|..    
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            36678899999999999999999999999987654      46899999999995 99999999999999988754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         200 --VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ-------AEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                        ..++..+|.++..+|++++|+..|+++++++|++..       ++..++.++..+|++.+|+.   ..+..+|.+
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence              567899999999999999999999999999988754       57889999999999888876   444445543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=6.2e-15  Score=104.50  Aligned_cols=90  Identities=28%  Similarity=0.444  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VKAYQRRA  207 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~~g  207 (270)
                      .+...|..++..|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|++      ..+++++|
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555555555555      55555555


Q ss_pred             HHHHHcCCHHHHHHHH
Q psy6284         208 AARRSLNHFEDARKDI  223 (270)
Q Consensus       208 ~~~~~~g~~~~A~~~~  223 (270)
                      .++..+|+++.|+..|
T Consensus        86 ~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           86 LAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHhHhhhHhHH
Confidence            5555555554444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.55  E-value=2.2e-13  Score=116.49  Aligned_cols=124  Identities=16%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------------------------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----------------------------------------------  164 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----------------------------------------------  164 (270)
                      ...+...|..+...|++++|+..|.+++...|.                                               
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            344556666666666777777777666665443                                               


Q ss_pred             ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         165 ----DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       165 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                          ++.++.++|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence                3455666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCCCCcch
Q psy6284         241 AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~  255 (270)
                      +.++..+|++.+++.
T Consensus       292 ~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          292 GISCINLGAHREAVE  306 (368)
T ss_dssp             HHHHHHHTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
Confidence            666666666666555

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.54  E-value=1.4e-13  Score=116.66  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhcCC
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP---HDAVFFANR------------ALCFLKMKNYVSAEADCTASLKLDN  197 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p  197 (270)
                      ..+...|..++..|++++|+..|.++++..|   .+..++..+            |.++...|++++|+..+++++..+|
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3455556666666666666666666666666   555555544            4555666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666655544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=3.3e-14  Score=103.61  Aligned_cols=93  Identities=22%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       163 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      |..+..+.++|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcch
Q psy6284         243 LNRKLNIPLSPIK  255 (270)
Q Consensus       243 ~~~~~~~~~~a~~  255 (270)
                      ++..+|++.+++.
T Consensus        81 ~~~~~~~~~~A~~   93 (126)
T 3upv_A           81 AQIAVKEYASALE   93 (126)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHHhCHHHHHH
Confidence            9999999988877

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.2e-13  Score=123.14  Aligned_cols=104  Identities=29%  Similarity=0.426  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...+..++..|..+++.|+|++|+..|++++..+| ++.+++++|.|+..+|++++|+.+|++++.++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            45677899999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      ++..+|++++|+..|+++++++|.+
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999855

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=3.4e-14  Score=116.54  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=110.1

Q ss_pred             HHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         143 VKEGKWGEAIEKYNVAIQTY----PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      ...|+|++|+..|.++++..    |.++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34578999999999999974    45678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      |+..|+++++++|++..++..++.++..+|++.+++.   ..+..+|.
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999988877   44444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.52  E-value=5.3e-14  Score=128.48  Aligned_cols=119  Identities=14%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      .|++++|+..|+++++.+|.+..+++++|.++..+|++++|+..+++++.++|++..+++.+|.++..+|++++|++.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         225 KVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       225 ~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ++++++|++..++..++.++..+|++.+|+.   ..+..+|.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988877   44444553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.52  E-value=5.3e-14  Score=103.22  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-------QAE  237 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~  237 (270)
                      ...++.++|.++++.|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+++|+++++++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999774       578


Q ss_pred             HHHHHHHHHhCCCCCcch
Q psy6284         238 IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       238 ~~l~~~~~~~~~~~~a~~  255 (270)
                      ..++.++..+|++.+|+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~  104 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQ  104 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            889999999999988877

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.52  E-value=4.5e-13  Score=117.84  Aligned_cols=124  Identities=19%  Similarity=0.052  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHH--
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRR--  206 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~--  206 (270)
                      +..+...|..++..|++++|+..|.++++.+|.+..++.++|.++..+|++++|+..|++++.++|.+.   .++..+  
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            456777888888888888888888888888888888888888888888888888888888888888877   665544  


Q ss_pred             ----------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 ----------AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 ----------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                |.++...|++++|+..|+++++++|.+..++..++.++...|++.+++.
T Consensus       140 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  198 (450)
T 2y4t_A          140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS  198 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence                      6668888888888888888888888888888888888888888888766

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=8.5e-14  Score=98.18  Aligned_cols=103  Identities=15%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy6284         161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN--NKQAEI  238 (270)
Q Consensus       161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~  238 (270)
                      ++|++..+++++|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHh-CCCCCcch---HhhhcCCC
Q psy6284         239 ELAELNRKL-NIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       239 ~l~~~~~~~-~~~~~a~~---~~~~~~~~  263 (270)
                      .++.++..+ |++.+++.   ..+...|.
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            999999999 99998877   44444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.2e-13  Score=95.52  Aligned_cols=91  Identities=12%  Similarity=0.054  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEI  238 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~  238 (270)
                      +..+++++|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHhCCCCCcch
Q psy6284         239 ELAELNRKLNIPLSPIK  255 (270)
Q Consensus       239 ~l~~~~~~~~~~~~a~~  255 (270)
                      .++.++..+|....++.
T Consensus        83 ~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHhHhhhHh
Confidence            99999999999888776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=1.1e-13  Score=105.76  Aligned_cols=102  Identities=15%  Similarity=0.041  Sum_probs=93.7

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         162 YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       162 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      .+.++..++.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcch---HhhhcCCC
Q psy6284         242 ELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       242 ~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      .++..+|++.+++.   ..+..+|.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC
Confidence            99999999988877   44444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.50  E-value=1.1e-13  Score=100.62  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ..++.+|.+++..|++++|+..|++++.++|++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcch---HhhhcCC
Q psy6284         247 LNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       247 ~~~~~~a~~---~~~~~~~  262 (270)
                      +|++.+++.   ..+..+|
T Consensus        98 ~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            999988877   4444455

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=7.2e-14  Score=105.64  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNT-------YVK-----AYQRRAAARRSLNHFEDARKDILKVLAL----  229 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----a~~~~g~~~~~~g~~~~A~~~~~~al~~----  229 (270)
                      ...+.++|.+++.+|+|++|+..|++++.++|+       +..     +|+++|.++..+|++++|+.+|.++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456899999999999999999999999999999       554     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHhCCCCCcch
Q psy6284         230 ---EPNNKQAE----IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       230 ---~p~~~~a~----~~l~~~~~~~~~~~~a~~  255 (270)
                         +|++..+|    +.++.++..+|++.+|+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence               99999999    999999999999999987

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.49  E-value=1.8e-13  Score=122.90  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++++|+..|++++.++|.+..+++.+|.++..
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            7777777777777777777777777777777777777766655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.2e-12  Score=116.04  Aligned_cols=132  Identities=17%  Similarity=0.063  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT---------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD------  196 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------  196 (270)
                      +..+...|..++..|+|++|+.+|++|+++         +|....+|.|+|.+|..+|++++|+.++++++.+.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            335677899999999999999999999986         56678899999999999999999999999999763      


Q ss_pred             --CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCCCCcch---HhhhcCCC
Q psy6284         197 --NTYVKAYQRRAAARRSL--NHFEDARKDILKVLALEPNNKQAEIELAELNRKL---NIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       197 --p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~---~~~~~a~~---~~~~~~~~  263 (270)
                        +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.+...+   ++..+++.   ..+..+|.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence              45678899998887664  5799999999999999999999999999886554   55566655   44455554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.49  E-value=1.3e-12  Score=94.64  Aligned_cols=101  Identities=26%  Similarity=0.323  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++...|.+..+++.+|.++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC
Q psy6284         213 LNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~  233 (270)
                      .|++++|+..|.+++.++|++
T Consensus       116 ~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          116 QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.49  E-value=4.6e-13  Score=120.29  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|.+++..+|. ..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            3556888999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999988877

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.48  E-value=2.4e-13  Score=99.97  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=90.8

Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      ..+|.++..++.+|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcch
Q psy6284         240 LAELNRKLNIPLSPIK  255 (270)
Q Consensus       240 l~~~~~~~~~~~~a~~  255 (270)
                      ++.++..+|++.+++.
T Consensus        83 l~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           83 LGQCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhHHHHHH
Confidence            9999999999988876

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.48  E-value=7.6e-15  Score=111.36  Aligned_cols=78  Identities=15%  Similarity=0.117  Sum_probs=63.5

Q ss_pred             EEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhcc
Q psy6284          18 HIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEI   97 (270)
Q Consensus        18 ~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~~   97 (270)
                      +|||++|++|||+++.||+.|+            +||+|||+|++++.+||+++++|.|++|.............+++.+
T Consensus         1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r   68 (178)
T 3jyw_M            1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR   68 (178)
T ss_dssp             CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred             CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence            5899999999999999999999            9999999999999999999999999988322222222234567778


Q ss_pred             Ccchhhhhhh
Q psy6284          98 DPTLDKACEE  107 (270)
Q Consensus        98 ~p~~~~~~~~  107 (270)
                      .|+.++....
T Consensus        69 ~P~~Il~~AV   78 (178)
T 3jyw_M           69 APSRIFYKAL   78 (178)
T ss_dssp             STTTHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            8888876554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.48  E-value=1.4e-13  Score=112.90  Aligned_cols=125  Identities=20%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL-------  195 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------  195 (270)
                      .+..+...|..++..|++++|+..|.+++++.        |....++.++|.++..+|++++|+..|++++.+       
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            45678889999999999999999999999873        556789999999999999999999999999988       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         196 -DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       196 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                       +|....+++.+|.++..+|++++|+..|++++++        +|....++..++.++...|++.+++.
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             5777889999999999999999999999999999        78888999999999999999988876

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.47  E-value=2e-13  Score=114.37  Aligned_cols=122  Identities=9%  Similarity=-0.018  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK  201 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~  201 (270)
                      .+...|+.+...|+|++|+..|.+++++.+.      ...++.++|.+|..+|++++|+.+|++++.+.|..      ..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4555688889999999999999999998532      25799999999999999999999999999998743      56


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 AYQRRAAARRSL-NHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 a~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++.++|.+|... |++++|+.+|++++++.|++      ..++..++.++..+|++.+|+.
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  179 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            899999999996 99999999999999998865      5678999999999999999887

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.47  E-value=1.2e-14  Score=124.54  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=110.8

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---------------VKAYQRRAAA  209 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~  209 (270)
                      .+++++|+..|.++++.+|.+..++.++|.+++.+|++++|+..|++++.++|.+               ..+++++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999999999999999999999998               6999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+.   ..+..+|..
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999877   555556643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.47  E-value=8.3e-13  Score=120.38  Aligned_cols=124  Identities=16%  Similarity=-0.011  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..+.+.|++++|+..|+++++..|.+..+|..+|.++...|++++|+..|++++...|.+..+++.+|.++.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|++++|++.|+++++++|.++.++..++.++...|++.+++.
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999988877

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.47  E-value=1e-12  Score=119.79  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC-HHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL------DNTY-VKAYQRR  206 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~a~~~~  206 (270)
                      .+...|..+.+.|++++|+..|+++++..|.++.++.++|.++...|++++|+..|++++.+      +|++ ..+++.+
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            34555666666666666666666666666666666777777777777777777777776666      4443 5666777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |.++...|++++|++.|+++++++|++..++..++.++...|+..++..
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  571 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT  571 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            7777777777777777777777777777777777777777776666655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.47  E-value=8.2e-13  Score=89.96  Aligned_cols=84  Identities=24%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      +..+++++|.++...+++++|+..|++++.++|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35566677777777777777777777777777777777777777777777777777777777777777777777777666


Q ss_pred             HHhC
Q psy6284         245 RKLN  248 (270)
Q Consensus       245 ~~~~  248 (270)
                      ..+|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            5543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=2.9e-13  Score=113.57  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR  220 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  220 (270)
                      .+...|++++|+..|.++++..|.++.++..+|.++..+|++++|+..+++++..+|.+..+++.+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|+++++++|++..++..++.++..+|++.+++.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999988876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.45  E-value=8.1e-13  Score=92.56  Aligned_cols=91  Identities=20%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH
Q psy6284         161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNKQAEI  238 (270)
Q Consensus       161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~  238 (270)
                      .+|+++.+++++|.+++.+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|++.|++++++.|  .+..+..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999987  4677777


Q ss_pred             HHHHHHHHhCCCC
Q psy6284         239 ELAELNRKLNIPL  251 (270)
Q Consensus       239 ~l~~~~~~~~~~~  251 (270)
                      .+..++...+...
T Consensus        82 ~l~~~l~~~~~~~   94 (100)
T 3ma5_A           82 ELQDAKLKAEGLE   94 (100)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHccccc
Confidence            8888777665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=1.9e-12  Score=109.08  Aligned_cols=124  Identities=10%  Similarity=-0.075  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ...+...|..+...|++++|+..|++++++.|.++. +|.++|.++..+|++++|+..|++++..+|.+..+|...+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            346778899999999999999999999999999886 8999999999999999999999999999998888887666664


Q ss_pred             HH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RS-LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~-~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .. .|++++|+..|+++++++|++..++..++.++..+|+..++..
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            43 7999999999999999999999999999999999898877766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.43  E-value=2.9e-13  Score=94.14  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      ++.|..++..|+|++|+..|+++++.+|.++. +++++|.++..+|++++|+..|++++.++|++..+++.        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45688888888888898888888888888888 88888888888888888888888888888888887754        5


Q ss_pred             CHHHHHHHHHHHHhhCCCCH
Q psy6284         215 HFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       215 ~~~~A~~~~~~al~~~p~~~  234 (270)
                      .+.+|+..|++++..+|++.
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            67778888888887777653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.5e-13  Score=118.46  Aligned_cols=123  Identities=16%  Similarity=0.167  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------HHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK------AYQRR  206 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------a~~~~  206 (270)
                      ..+...|..++..|++++|+..|+++++..|.++.+++++|.++..+|++++|+..+++++.++|.+..      +++.+
T Consensus       339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  418 (514)
T 2gw1_A          339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK  418 (514)
T ss_dssp             HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            345666777777777777777777777777777778888888888888888888888888877776644      77888


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 AAARRS---LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |.++..   .|++++|+..|++++.++|++..++..++.++...|++.+++.
T Consensus       419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  470 (514)
T 2gw1_A          419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT  470 (514)
T ss_dssp             HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence            888888   7888888888888888888888888888888888887777665

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.42  E-value=4.7e-12  Score=86.09  Aligned_cols=84  Identities=29%  Similarity=0.325  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+...|..++..|++++|+..|+++++.+|.++.+++++|.++..++++++|+..+++++.++|.+..+++.+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC
Q psy6284         211 RSLN  214 (270)
Q Consensus       211 ~~~g  214 (270)
                      ..+|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            8765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.42  E-value=5.9e-13  Score=109.06  Aligned_cols=126  Identities=20%  Similarity=0.132  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL------  195 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------  195 (270)
                      ..+..+...|..++..|++++|+.+|.+++.+        .|....++.++|.++..+|++++|+..+++++.+      
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            44667889999999999999999999999998        4667889999999999999999999999999998      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------
Q psy6284         196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------------------------------------------  229 (270)
Q Consensus       196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------------  229 (270)
                        .|....+++.+|.++..+|++++|+..|++++++                                            
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK  242 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence              7778889999999999999999999999999986                                            


Q ss_pred             -----CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         230 -----EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       230 -----~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                           .|....++..++.++...|++.+|+.
T Consensus       243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  273 (283)
T 3edt_B          243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHT  273 (283)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                 25556788889999999998877765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.41  E-value=3.7e-12  Score=106.70  Aligned_cols=127  Identities=8%  Similarity=-0.091  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH--HH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA--AA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g--~~  209 (270)
                      ...+...|..+...|++++|+..|.+     |.+..++.++|.++..+|++++|+..+++++..+|++....+..+  ..
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL  175 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            44678889999999999999999987     899999999999999999999999999999999999875544444  33


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      +...|++++|+..|+++++.+|+++.++..++.++..+|++.+++.   ..+..+|.
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3355899999999999999999999999999999999999998877   44555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.41  E-value=4.7e-14  Score=125.75  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=108.7

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---------------VKAYQRRAAA  209 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~  209 (270)
                      .++|++|+..|.+++...|....++.++|.+++.+++|++|+..|++++.++|.+               ..+|+++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3466788888888899999999999999999999999999999999999999998               7999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+.   ..+..+|..
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999887   555555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.40  E-value=8.9e-12  Score=102.64  Aligned_cols=118  Identities=13%  Similarity=0.008  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284         132 AVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       132 a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      ...+...|..+..    .+++++|+..|+++++..  ++.+++++|.++..    .+++++|+..|++++..+  ++.++
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~  113 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC  113 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH
Confidence            3456666777777    777777777777776653  66677777777777    777777777777777663  66677


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         204 QRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       204 ~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      +.+|.++..    .+++++|+..|+++++.+  +..++..++.++..    .+++.+++.
T Consensus       114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            777777776    777777777777777654  56666777777666    555555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=8.9e-13  Score=100.33  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKL------------------DNTYVKAYQRRAAARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  227 (270)
                      +..+.++|..++..|+|++|+..|++++.+                  +|.+..+++++|.++..+|++++|+.+|++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77888999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         228 ALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       228 ~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      +++|++..++..++.++..+|++.+|+.   ..+..+|..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999887   556666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=5.7e-12  Score=115.03  Aligned_cols=121  Identities=10%  Similarity=0.016  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCC
Q psy6284         131 SAVYSKEQGNKLVKEGK----------WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--NYVSAEADCTASLKLDNT  198 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~  198 (270)
                      ....|..+|..+...|+          +++|+..++++++.+|.+..+|++++.++..++  ++++++++|+++++++|.
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~  141 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER  141 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence            34567777777777766          778888888888888888888888888887777  567888888888888888


Q ss_pred             CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         199 YVKAYQRRAAARRSLN-HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                      +..||..++.++..+| .++++++++.++++.+|.|..||..++.++..++...
T Consensus       142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence            8888888888877777 7777888888888888888888888887777765543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.39  E-value=1.3e-11  Score=103.91  Aligned_cols=124  Identities=8%  Similarity=0.008  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhcCCCCHHH
Q psy6284         132 AVYSKEQGNKL----VKE---GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV--SAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       132 a~~~~~~g~~~----~~~---g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~p~~~~a  202 (270)
                      ...|..++..+    ...   +++++++..+.++++.+|.+..+|++++.+...++.++  ++++.+++++..+|.|..|
T Consensus       103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA  182 (306)
T 3dra_A          103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA  182 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence            45677778887    666   89999999999999999999999999999999999998  9999999999999999999


Q ss_pred             HHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         203 YQRRAAARRSLNH------FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       203 ~~~~g~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |..++.++..++.      ++++++.+.+++.++|+|..+|..++.++..+|...+++.
T Consensus       183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred             HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHH
Confidence            9999999999998      9999999999999999999999999999999998777665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.38  E-value=1.5e-12  Score=112.74  Aligned_cols=126  Identities=15%  Similarity=0.103  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---  199 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---  199 (270)
                      ..+..+...|..++..|++++|+.+|.+++++.+..       ..++.++|.++..+|++++|+..+++++.+.+..   
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP  220 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh
Confidence            456778899999999999999999999999985443       4589999999999999999999999999885533   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 ---VKAYQRRAAARRSLNHFEDARKDILKVLA-----LE-PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ---~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                         ..+++++|.++..+|++++|+..|+++++     .+ |....++..++.++..+|++.+|+.
T Consensus       221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence               35899999999999999999999999999     56 8889999999999999999888766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.38  E-value=2.6e-12  Score=93.36  Aligned_cols=94  Identities=22%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         162 YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       162 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      .|.+..+++++|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcch
Q psy6284         242 ELNRKLNIPLSPIK  255 (270)
Q Consensus       242 ~~~~~~~~~~~a~~  255 (270)
                      .++..+|++.+++.
T Consensus        92 ~~~~~~~~~~~A~~  105 (133)
T 2lni_A           92 AALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999999988877

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.37  E-value=1.4e-11  Score=102.92  Aligned_cols=121  Identities=12%  Similarity=-0.018  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCCCH---
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASL---KLDNTYV---  200 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~---  200 (270)
                      ..+...|..+...|++++|+.+|.++++..+..      ..+++++|.+|..+|++++|+..|++++   ...|++.   
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            345668889999999999999999999876543      5689999999999999999999999999   4456543   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCc
Q psy6284         201 -KAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       201 -~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a  253 (270)
                       .+++++|.+|..+|++++|+..|++++++.++      -..++..++.++..+|++.+|
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence             69999999999999999999999999998653      278899999999999999888

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.37  E-value=2e-12  Score=96.78  Aligned_cols=126  Identities=15%  Similarity=0.128  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----  199 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  199 (270)
                      ..+..+...|..++..|++++|+.+|.+++++.+..      ..++.++|.++..+|++++|+..+++++.+.+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            345678889999999999999999999999986543      2589999999999999999999999999876543    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 --VKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                        ..+++.+|.++..+|++++|+..+++++++.+.      ...++..++.++..+|++.+++.
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence              678999999999999999999999999987432      25688899999999999888766

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.37  E-value=9.1e-12  Score=104.88  Aligned_cols=118  Identities=11%  Similarity=-0.093  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         132 AVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCF----LKM---KNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       132 a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      ...|..+|..+...|  ++++++..+.++|..+|.+..+|+.++.++    ..+   +++++++..|++++..+|.+..+
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a  146 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV  146 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence            456888899999888  999999999999999999999999999999    777   78999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         203 YQRRAAARRSLNHFE--DARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      |+.++.++..+|.++  ++++.+.++++.||.|-.||...+.+...++.
T Consensus       147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999988  99999999999999999999999999988775

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=4.2e-13  Score=105.62  Aligned_cols=125  Identities=15%  Similarity=0.041  Sum_probs=103.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------------HH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV----------------KA  202 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~a  202 (270)
                      +...-..|+|++|...+.......+.....+.++|.+++..|+|++|+..|++++.+.|.++                .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            44445567788888887777766677788999999999999999999999999999999887                89


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+.   ..+..+|.
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999988877   44445553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=7.8e-12  Score=105.28  Aligned_cols=124  Identities=14%  Similarity=0.061  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284         132 AVYSKEQGNKLV-------KEGKW-------GEAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD  196 (270)
Q Consensus       132 a~~~~~~g~~~~-------~~g~~-------~~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  196 (270)
                      +..|...|..+.       ..|++       ++|+..|++|+. ++|++..+|.++|.++..+|++++|...|++++.++
T Consensus        50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  129 (308)
T 2ond_A           50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence            456777777765       45885       999999999999 799999999999999999999999999999999999


Q ss_pred             CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hCCCCCcch
Q psy6284         197 NTYVK-AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK-LNIPLSPIK  255 (270)
Q Consensus       197 p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~~~~~~a~~  255 (270)
                      |.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+..++..
T Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99887 999999999999999999999999999999998888766655433 577766655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.35  E-value=3.3e-12  Score=106.78  Aligned_cols=122  Identities=13%  Similarity=0.003  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKL-------DNTYV  200 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~  200 (270)
                      .+...|..+...+++++|+.+|++++.+.+..      ..++.++|.+|..+|++++|+..|++++..       .+...
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            45568999999999999999999999975443      347999999999999999999999999942       23345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCC-CCcch
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIP-LSPIK  255 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~-~~a~~  255 (270)
                      .+++++|.+|..+|++++|+..+++++++.+..      ..++..++.++..+|+. .+|+.
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            689999999999999999999999999987655      78999999999999965 66655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=2.3e-12  Score=107.24  Aligned_cols=126  Identities=19%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-----  196 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----  196 (270)
                      ..+..+...|..++..|++++|+..|.+++.+        .|....++.++|.++..+|++++|+..+++++.+.     
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence            34567888999999999999999999999987        35567899999999999999999999999999874     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         197 ---NTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       197 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                         |....+++.+|.++...|++++|+..|++++++        +|....++..++.++..+|++.+++.
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence               567789999999999999999999999999999        78888999999999999999988876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.35  E-value=2.5e-12  Score=111.81  Aligned_cols=120  Identities=15%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----VFFANRALCFLKMKNYVSAEADCTASLKL------DNTY  199 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~  199 (270)
                      ..+..+...|..++..|+|++|+..|+++++..|.+.    .+++++|.++..+|++++|+..+++++.+      +|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3456678899999999999999999999999999987    58999999999999999999999999988      5778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCC
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLAL------EPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ..+++.+|.++..+|++++|+..|++++++      .|....++..++.++..+|+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            899999999999999999999999999999      67778899999999999999

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=1e-11  Score=87.98  Aligned_cols=98  Identities=19%  Similarity=0.130  Sum_probs=90.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      .+..++.+|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCcch---HhhhcCC
Q psy6284         245 RKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       245 ~~~~~~~~a~~---~~~~~~~  262 (270)
                      ..+|++.++..   ..+..+|
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHhhHHHHHHHHHHHHHcCC
Confidence            99999988877   4444444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.35  E-value=2e-11  Score=92.23  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA--  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~--  209 (270)
                      ...+...|..++..|+|++|+..|.+++..+|.++.+++++|.++..+|++++|+..+++++.++|.+..++..++.+  
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  126 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  126 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999999999988555544  


Q ss_pred             HHHcCCHHHHHHHHHHHHhh
Q psy6284         210 RRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~  229 (270)
                      +...|++++|+..+.++..+
T Consensus       127 ~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          127 IVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHH
Confidence            88899999999999877543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=1.9e-11  Score=111.55  Aligned_cols=84  Identities=8%  Similarity=0.023  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...|..++..+.+.+  +|++|+..+.++++.+|.+..+|.+++.+...++ .++++++++.+++..+|.+..||+.+|.
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~  186 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  186 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence            345556666666666  5566666666666666666666666666666666 6666666666666666666666666666


Q ss_pred             HHHHcCC
Q psy6284         209 ARRSLNH  215 (270)
Q Consensus       209 ~~~~~g~  215 (270)
                      ++..+++
T Consensus       187 ll~~l~~  193 (567)
T 1dce_A          187 LLPQLHP  193 (567)
T ss_dssp             HHHHHSC
T ss_pred             HHHhhcc
Confidence            6655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.34  E-value=3.4e-12  Score=107.58  Aligned_cols=124  Identities=11%  Similarity=0.024  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-----  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  199 (270)
                      .+..+.+.|..+...|+|++|+.+|++++++.+..      ..++.++|.+|.. |++++|+..|++++.+.|..     
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~  153 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence            34566777888888888888888888887774321      3567788888877 88888888888888776533     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCCCCcch
Q psy6284         200 -VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~  255 (270)
                       ..++.++|.++..+|++++|+..|++++++.|++.      .++..++.++..+|++.+++.
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             46777788888888888888888888887765442      356666777777777777766

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=91.94  Aligned_cols=103  Identities=18%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284         161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  237 (270)
                      ..|.+...++.+|.+++..|++++|+..|++++.++|++   ..+++.+|.++..+|++++|+..|+++++++|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788999999999999999999999999999999988   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         238 IELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       238 ~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      ..++.++..+|++.+++.   ..+..+|.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999999999999988877   44444553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=106.80  Aligned_cols=126  Identities=21%  Similarity=0.149  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL------  195 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------  195 (270)
                      ..+..+...|..++..|++++|+..|.+++++.        |....++.++|.++..+|++++|+..+++++.+      
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence            345678889999999999999999999999884        556779999999999999999999999999998      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------
Q psy6284         196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------------------------------------------  229 (270)
Q Consensus       196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------------  229 (270)
                        .|....+++.+|.++..+|++++|+..|++++++                                            
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  268 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK  268 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence              7777889999999999999999999999999984                                            


Q ss_pred             -----CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         230 -----EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       230 -----~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                           +|.+..++..++.++..+|++.+|+.
T Consensus       269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  299 (311)
T 3nf1_A          269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAET  299 (311)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence                 46778899999999999999988876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.34  E-value=3.4e-11  Score=102.15  Aligned_cols=118  Identities=9%  Similarity=0.020  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCC
Q psy6284         132 AVYSKEQGNKLVKEGK----------WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN--YVSAEADCTASLKLDNTY  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~  199 (270)
                      ...|..++..+...+.          +.+++..+..++..+|.+..+|+.++.++..+++  +++++.+|++++..+|.|
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN  143 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  143 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence            3345555555544443          5566666666666666666666666666666663  566666666666666666


Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         200 VKAYQRRAAARRSLNH-FEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ..||..++.++...|. ++++++++.++++.+|.|..||..++.++..++.
T Consensus       144 y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          144 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            6666666666666665 4666666666666666666666666666655543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.34  E-value=6.2e-12  Score=91.31  Aligned_cols=89  Identities=16%  Similarity=0.027  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIEL  240 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l  240 (270)
                      .+++++|.+++..|++++|+..|++++..+|++.   .+++.+|.++...|++++|+..|+++++.+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578999999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHhCCCCCcch
Q psy6284         241 AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~  255 (270)
                      +.++..+|++.+++.
T Consensus        83 a~~~~~~g~~~~A~~   97 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999988877

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.32  E-value=1.2e-10  Score=95.82  Aligned_cols=119  Identities=14%  Similarity=0.053  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      ....+...|..+..    .+++++|+..|+++++..  ++.+++++|.++..    .+++++|+.++++++..+  ++.+
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  184 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPG  184 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH
Confidence            34567788888888    899999999999998865  67888999999988    899999999999998874  6788


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      ++.+|.++..    .+++++|+..|+++++.+|  ..++..++.++..    .+++.+|+.
T Consensus       185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~  243 (273)
T 1ouv_A          185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE  243 (273)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence            9999999999    9999999999999998866  8888999999888    888888766

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.32  E-value=2.6e-11  Score=86.67  Aligned_cols=95  Identities=23%  Similarity=0.221  Sum_probs=87.8

Q ss_pred             hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         161 TYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       161 ~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      .+|.. ..+++.+|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35555 77899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcch
Q psy6284         240 LAELNRKLNIPLSPIK  255 (270)
Q Consensus       240 l~~~~~~~~~~~~a~~  255 (270)
                      ++.++...|++.+++.
T Consensus        83 la~~~~~~~~~~~A~~   98 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIE   98 (125)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCHHHHHH
Confidence            9999999999988876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=4.5e-12  Score=109.75  Aligned_cols=122  Identities=14%  Similarity=0.126  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT---YPH---DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-------YV  200 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~  200 (270)
                      .++..|..++..|+|++|+..|++++.+   .++   ...+++++|.++..+|++++|+..+.+++.+.+.       ..
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445999999999999999999999987   233   4579999999999999999999999999988443       35


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCCCCcch
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+++.+|.++..+|++++|+..|++++++.|...      .++..++.++..+|++.+|+.
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            6899999999999999999999999999866443      589999999999999988877

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=7.1e-12  Score=104.42  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       163 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      |.+...++++|.+++..|++++|+..|++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcch
Q psy6284         243 LNRKLNIPLSPIK  255 (270)
Q Consensus       243 ~~~~~~~~~~a~~  255 (270)
                      ++..+|++.+|+.
T Consensus        81 ~~~~~g~~~~A~~   93 (281)
T 2c2l_A           81 CQLEMESYDEAIA   93 (281)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9999999988877

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.31  E-value=9e-12  Score=89.90  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                      .+|.+..+++.+|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcch---HhhhcCC
Q psy6284         241 AELNRKLNIPLSPIK---VDFLHNP  262 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~---~~~~~~~  262 (270)
                      +.++..+|++.+++.   ..+..+|
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            999999999988877   3444444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.31  E-value=1.1e-10  Score=97.55  Aligned_cols=126  Identities=13%  Similarity=-0.029  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLDNTY----  199 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----  199 (270)
                      .....+...+..++..|+|++|+..|.++++..+...      ..++.+|.++...|++++|+..+++++.+.+..    
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            3445677889999999999999999999999887754      357789999999999999999999999876543    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhCCCCCcch
Q psy6284         200 --VKAYQRRAAARRSLNHFEDARKDILKVL---ALEPNNK----QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~~~l~~~~~~~~~~~~a~~  255 (270)
                        ..+++.+|.+|..+|++++|+..|++++   +..|++.    .++.+++.++..+|++.+|+.
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~  217 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence              5699999999999999999999999999   5567654    689999999999999998877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.29  E-value=7.1e-12  Score=104.86  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK  201 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~  201 (270)
                      +..+...|..++..|++++|+..|+++++..|.+    ..++..+|.++...|++++|+..+++++.+      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            4467788999999999999999999999999998    468999999999999999999999999987      455678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNI  249 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~  249 (270)
                      +++.+|.++..+|++++|+..|++++++.|..      ..++..++.++..+|+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            99999999999999999999999999987654      3488999999999988

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=2e-11  Score=108.04  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         133 VYSKEQGNKLVK--EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---KNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       133 ~~~~~~g~~~~~--~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      ..+.+.|..+..  .++|++|+.+|+++++++|+++.++.++|.++..+   +++++|+..+++++.++|.+..++..+|
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            345556665544  45789999999999999999998888888876554   5567788888888888888888777777


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         208 AARRSL----NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       208 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .++..+    |++++|++.|++++.++|++..++..++.++...|++.+++.
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~  268 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE  268 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence            666543    466777888888888888888888888888887777777665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.28  E-value=7e-12  Score=98.09  Aligned_cols=124  Identities=13%  Similarity=0.035  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC----C
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL---DN----T  198 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p----~  198 (270)
                      +..+...|..++..|++++|+.+|.+++.+      .|....++.++|.++..+|++++|+..+++++.+   .+    .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            456788899999999999999999999984      3445678999999999999999999999999988   33    3


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHhCCCCCcch
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNK----QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~----~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...+++.+|.++..+|++++|+..+++++.+.+  .+.    .++..++.++...|++.++..
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            356799999999999999999999999997643  222    346889999999999887765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.28  E-value=1.4e-11  Score=106.53  Aligned_cols=127  Identities=13%  Similarity=-0.011  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-------DAVFFANRALCFLKMKNYVSAEADCTASLKLDN----  197 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----  197 (270)
                      ...+..+...|..++..|++.+|+.+|.+++++.+.       ...++.++|.++..+|++++|+..+++++.+.+    
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            345667888999999999999999999999987543       245788999999999999999999999998643    


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         198 --TYVKAYQRRAAARRSLNHFEDARKDILKVLA-----LEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 --~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                        ....+++++|.++..+|++++|+..|++++.     .+|....++..++.++..+|++.+|+.
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence              2346888999999999999999999999999     788888999999999999999888766

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.28  E-value=5.4e-11  Score=100.95  Aligned_cols=104  Identities=11%  Similarity=0.068  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      ....|..++..+...+  .+++++.++.++++.+|.|..+|.+++.+...++. ++++++++.+++..+|.|..||..++
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~  186 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  186 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4567888999999988  59999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             HHHHHc--------------CCHHHHHHHHHHHHhhCCCCH
Q psy6284         208 AARRSL--------------NHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       208 ~~~~~~--------------g~~~~A~~~~~~al~~~p~~~  234 (270)
                      .++..+              +.++++++++.+++.++|+|.
T Consensus       187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            999887              568999999999999999986

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=106.99  Aligned_cols=124  Identities=15%  Similarity=0.100  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  199 (270)
                      +..+...|..++..|++++|+..|.+++++.|....      ++.++|.++..+|++++|+..+++++.+.|..      
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  266 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  266 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence            456788899999999999999999999988665543      89999999999999999999999999887765      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++.+|.++...|++++|+..|++++++.+..      ..++..++.++..+|++.+++.
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            7789999999999999999999999999986654      6788899999999999888766

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=106.54  Aligned_cols=118  Identities=16%  Similarity=0.206  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----VFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK  201 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~  201 (270)
                      +..+...|..++..|+|++|+..|++++...|.++    .++..+|.++..+|++++|+..+++++.+      .|....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34577889999999999999999999999999984    68999999999999999999999999987      445678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNI  249 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~  249 (270)
                      +++.+|.++..+|++++|+..|++++++.|..      ..++..++.++...|+
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999997754      4589999999999998

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.27  E-value=1.2e-11  Score=104.22  Aligned_cols=121  Identities=9%  Similarity=-0.018  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVK  201 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~  201 (270)
                      .+...|+.+...|+|++|+..|.+++++.+..      ..++.++|.+|..+|++++|+.+|++++.+.+.      ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34555888999999999999999999986543      568999999999999999999999999988532      246


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++.++|.+|.. |++++|+.+|++++++.|..      ..++..++.++..+|++.+|+.
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            89999999998 99999999999999998754      5788999999999999998877

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.27  E-value=7.3e-11  Score=88.07  Aligned_cols=100  Identities=16%  Similarity=0.089  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK---NYVSAEADCTASLKLD-N-TYVKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                      ...+...|.+.+..+|.+..+.+++|.|+.+.+   +.++++..++.++..+ | .+..++|++|.+++++|+|++|+++
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456677888888889999999999999999988   7779999999999998 7 6799999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         223 ILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       223 ~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      ++++|+++|+|.+|...+..+..++
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988887655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=7.3e-11  Score=81.75  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVK-AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE--IELAELNR  245 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~l~~~~~  245 (270)
                      .+++|.+++..|++++|+..|++++..+|.+.. +++.+|.++..+|++++|++.|+++++++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999 999999999999999999999999999999999988  66666655


Q ss_pred             HhC
Q psy6284         246 KLN  248 (270)
Q Consensus       246 ~~~  248 (270)
                      ...
T Consensus        83 ~~~   85 (99)
T 2kc7_A           83 FYN   85 (99)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.26  E-value=6.9e-12  Score=107.33  Aligned_cols=103  Identities=12%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRS  212 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-~~~  212 (270)
                      .+.+.|..+++.|+|++|+..|+++|+++|++..+++++|.+|..+|++++|+.+|++++.++|++..++..++.+ ...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999998 455


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQA  236 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a  236 (270)
                      .+..+++...|.+++..+|+++..
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCC
Confidence            678889999999999999988643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.26  E-value=2.8e-11  Score=96.49  Aligned_cols=110  Identities=10%  Similarity=-0.082  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC--CCHHH
Q psy6284         133 VYSKEQGNKLVKEG----KWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDN--TYVKA  202 (270)
Q Consensus       133 ~~~~~~g~~~~~~g----~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~~~a  202 (270)
                      ..+...|..+.. +    ++++|+..|+++++  +.++.+++++|.+|..    .+++++|+.+|++++...|  .++.+
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a  127 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA  127 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence            344555555554 4    55566665555533  3455556666666555    5556666666666665555  23556


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ++.+|.+|..    .+++++|+..|++++++ |.++.+...|+.++..
T Consensus       128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            6666666655    55566666666666655 5555556666655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.25  E-value=4.7e-11  Score=101.85  Aligned_cols=118  Identities=11%  Similarity=-0.074  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-K-NYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...|..++..+...| .+++++..+.++|..+|.+..+|+.++.++..+ + ++++++..+++++..+|.|..+|+.++.
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w  167 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW  167 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456788888888888 599999999999999999999999999999888 7 8899999999999999999999999999


Q ss_pred             HHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         209 ARRSLNHFE--------DARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       209 ~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ++..+|.++        ++++.+.++++.+|.|..||..++.++..++.
T Consensus       168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            998888887        99999999999999999999999999888876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.25  E-value=1.1e-10  Score=99.62  Aligned_cols=111  Identities=13%  Similarity=0.026  Sum_probs=103.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSL-N-HFE  217 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-g-~~~  217 (270)
                      ...+.+..++|+..+.++|.++|.+..+|+.++.++..++ .+++++..+++++..+|.+..+|+.++.++..+ + +++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            3344455679999999999999999999999999999999 599999999999999999999999999999998 8 999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                      ++++.+.++++++|.|..+|...+.+...++...
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999988776

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.25  E-value=2e-11  Score=88.10  Aligned_cols=92  Identities=16%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy6284         164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-------KQA  236 (270)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a  236 (270)
                      ..+..++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999999999999999999999988       999


Q ss_pred             HHHHHHHHHHhCCCCCcch
Q psy6284         237 EIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       237 ~~~l~~~~~~~~~~~~a~~  255 (270)
                      +..++.++..+|++.+++.
T Consensus        82 ~~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHH
Confidence            9999999999999988877

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=7.8e-12  Score=111.97  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA--  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~--  209 (270)
                      +..+...|..+++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..++++++++|++..++..++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q psy6284         210 RRSLNHFEDARKDIL-----------KVLALEPNN  233 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~-----------~al~~~p~~  233 (270)
                      +..+|++++|++.++           +++.++|+.
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            889999999999999           888888864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.23  E-value=1.2e-11  Score=107.54  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  199 (270)
                      +..+...|..++..|++++|+.+|.+++++.+....      ++.++|.++..+|++++|+..+++++.+.+..      
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  302 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE  302 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            446778999999999999999999999998775433      89999999999999999999999999988754      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++.+|.++..+|++++|+..|++++.+.+..      ..++..++.++..+|++.+++.
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            7899999999999999999999999999986543      5689999999999999888765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.21  E-value=3.5e-11  Score=90.75  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKW----------GEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-----------NYVSAEADC  189 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~----------~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~  189 (270)
                      .++.+.+.|..+...+++          ++|+..|++||+++|++..+|+++|.+|..+|           ++++|+.+|
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~  114 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF  114 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence            356788889999888765          59999999999999999999999999999885           899999999


Q ss_pred             HHHHhcCCCCH
Q psy6284         190 TASLKLDNTYV  200 (270)
Q Consensus       190 ~~al~~~p~~~  200 (270)
                      ++|+.++|++.
T Consensus       115 ~kAl~l~P~~~  125 (158)
T 1zu2_A          115 QQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHCTTCH
T ss_pred             HHHHHhCCCCH
Confidence            99999999974

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.21  E-value=1.4e-10  Score=83.24  Aligned_cols=78  Identities=9%  Similarity=0.075  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      .....+...|..++..|+|++|+..|+++++.+|+++.+++++|.|+..+|++++|+..+++++...|+++.......
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999987654443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.20  E-value=1.7e-10  Score=99.62  Aligned_cols=101  Identities=11%  Similarity=-0.051  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLK-----LDNTY  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~  199 (270)
                      .+..+...|..+...|+|++|+.+|.+++++.+.      ...++.++|.++..+|++++|+..+++++.     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            4567788999999999999999999999997432      246899999999999999999999999999     78888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      ..+++.+|.++..+|++++|+..|++++++.+
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999843

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.20  E-value=3e-11  Score=100.95  Aligned_cols=124  Identities=15%  Similarity=0.099  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------  199 (270)
                      +..+...|..++..|++++|+..|++++++.+..      ..++.++|.++..+|++++|+..+++++.+.+..      
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  262 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  262 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence            4567889999999999999999999999886543      3389999999999999999999999999887655      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++.+|.++..+|++++|+..|++++.+.|..      ..++..++.++..+|++.++..
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            7799999999999999999999999999986643      5588899999999999888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=1.7e-10  Score=91.83  Aligned_cols=119  Identities=11%  Similarity=-0.033  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK----NYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      +..+...|..++..+++++|+..|+++++.  .++.+++++|.+|.. +    ++++|+.+|++++.  +.++.+++.+|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            456677788888888888888888887764  577788888888777 6    78888888888754  46778888888


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         208 AARRS----LNHFEDARKDILKVLALEP--NNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       208 ~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      .+|..    .+++++|+..|+++++.+|  +++.++..|+.++..    .+++.+++.
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  150 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE  150 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            88876    7788888888888888777  357888888888776    445555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.18  E-value=2.1e-10  Score=94.94  Aligned_cols=110  Identities=13%  Similarity=0.025  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CC-CHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-D-AVFFANRALCFLKMKNYVSAEADCTASLKLD--NT-YVKAYQRRAA  208 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~a~~~~g~  208 (270)
                      ..+..|..+++.++|++|+.+|++++...+. . ..+++++|.++..+|++++|+.+|++++...  |. ...+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            5678899999999999999999987664312 1 3589999999999999999999999999655  65 6779999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      ++..+|+.++|+..|++++..+|+ ..++..|....
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~  251 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS  251 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence            999999999999999999999999 88887775443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.18  E-value=1.7e-10  Score=96.29  Aligned_cols=122  Identities=13%  Similarity=-0.035  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK  201 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~  201 (270)
                      .+.+.+..++..|+|++|+..|.++++..+..+.      .+..+|.++...+++++|+..+++++.+.+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            4556788999999999999999999998877654      34468999998999999999999999865432      34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLAL-------EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++..+|.+|..+|++++|+..|+++++.       .+....++.+++.++..+|++.+|+.
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            7999999999999999999999999952       22334688999999999999988876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=4.3e-10  Score=101.58  Aligned_cols=124  Identities=10%  Similarity=-0.070  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-  209 (270)
                      ...+...|..+.+.|++++|...|+++++..|.++ .+|.++|.++.++|++++|...|++++...|.....+...|.+ 
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            45677889999999999999999999999999986 6999999999999999999999999999999888888777766 


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...|++++|+..|+++++.+|+++.++..++.++..+|+..++..
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~  446 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  446 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred             HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence            3469999999999999999999999999999999999998776655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.15  E-value=6.5e-11  Score=97.97  Aligned_cols=121  Identities=12%  Similarity=0.090  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARR  211 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~  211 (270)
                      .....+..+...|+|++|...|...+...|.+. +.+.+|.++++.+++++|+..|+++....+..  ..+++.+|.++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            345668899999999999999999999999888 99999999999999999999999887754222  458999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALE--PN-NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~--p~-~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+|++++|+..|++++.-.  |. ...+...++.++..+|+..++..
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999654  65 67899999999999999988876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=3e-10  Score=79.23  Aligned_cols=80  Identities=9%  Similarity=0.076  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAA  209 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~  209 (270)
                      +..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..+++++.+.|.  +..+...+..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999998763  34444444444


Q ss_pred             HH
Q psy6284         210 RR  211 (270)
Q Consensus       210 ~~  211 (270)
                      +.
T Consensus        87 l~   88 (100)
T 3ma5_A           87 KL   88 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.15  E-value=4.1e-10  Score=97.52  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+..+.+.|..+++.|+|++|+.+|+++++++|+++.+++++|.+|..++++++|+.+|++++.++|++..++..++.+
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~  350 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q psy6284         210 RRSLNHFEDARKD  222 (270)
Q Consensus       210 ~~~~g~~~~A~~~  222 (270)
                      +..+++++++.+.
T Consensus       351 ~~~~~~~~~a~k~  363 (370)
T 1ihg_A          351 KQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=7.5e-10  Score=85.21  Aligned_cols=82  Identities=9%  Similarity=-0.021  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                      ....|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++..+|++  ..+++.+|.++..+|+.++|+..|+
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            34568999999999999999999999999999999999999999999999976  6699999999999999999999999


Q ss_pred             HHHh
Q psy6284         225 KVLA  228 (270)
Q Consensus       225 ~al~  228 (270)
                      ++|.
T Consensus       169 ~al~  172 (176)
T 2r5s_A          169 RQLY  172 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.12  E-value=6.4e-10  Score=82.86  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDN------TY  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~  199 (270)
                      +..+...|..++..|++++|+.+|.+++.+.+..      ..++.++|.++..+|++++|+..+++++.+.+      ..
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            4568889999999999999999999999986543      56899999999999999999999999997743      23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPN  232 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  232 (270)
                      ..+++.+|.++..+|++++|+..+++++++...
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999987543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.10  E-value=1e-09  Score=75.59  Aligned_cols=74  Identities=15%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy6284         162 YPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ  235 (270)
Q Consensus       162 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~  235 (270)
                      +|+++.++..+|.+++..++   .++|...+++++.++|+++.+++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68999999999999987766   799999999999999999999999999999999999999999999999998543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.07  E-value=3.7e-10  Score=88.15  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcC
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYP-HDAVFFANRALCFLKMKNYVSAEADCTASLK------LDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~~g~~~~~~g  214 (270)
                      ++..|+|++|...++.... +| ....++.++|.++..+|++++|+..+++++.      ..+....+++.+|.++..+|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            4678999999996555544 45 6688999999999999999999999999998      45566789999999999999


Q ss_pred             CHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         215 HFEDARKDILKVLAL---EPN----NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       215 ~~~~A~~~~~~al~~---~p~----~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ++++|+..|++++.+   .++    ...++..++.++..+|++.+++.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  128 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ  128 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999998   443    35678999999999999988766

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.05  E-value=4.3e-10  Score=100.63  Aligned_cols=130  Identities=13%  Similarity=0.075  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q psy6284         126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL--  195 (270)
Q Consensus       126 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--  195 (270)
                      .+.+..+....+.+..+..+|+|++|+..|+++|++     -|++   ...+.|+|.+|..+|+|++|+..+++++.+  
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~  382 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM  382 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            344556677788888899999999999999999986     2344   568999999999999999999999999965  


Q ss_pred             ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHHhCCCCCcch
Q psy6284         196 ---DNTY---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAE---IELAELNRKLNIPLSPIK  255 (270)
Q Consensus       196 ---~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~---~~l~~~~~~~~~~~~a~~  255 (270)
                         -|++   ...++++|.+|..+|++++|+..|++|+++     .|+++...   ..+..++.+++.+.++..
T Consensus       383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3444   568999999999999999999999999974     67776544   566777766666655544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=1.1e-09  Score=91.33  Aligned_cols=85  Identities=14%  Similarity=0.045  Sum_probs=75.5

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARRSLNHFEDARK  221 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~g~~~~A~~  221 (270)
                      ..++.++|+..|++++..+|+++.+++++|.++...|++++|+..+.+++..+|++  ..++.++|.++..+|+.++|+.
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS  276 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence            33334445566667788899999999999999999999999999999999999998  8999999999999999999999


Q ss_pred             HHHHHHh
Q psy6284         222 DILKVLA  228 (270)
Q Consensus       222 ~~~~al~  228 (270)
                      .|++++.
T Consensus       277 ~~r~al~  283 (287)
T 3qou_A          277 XYRRQLY  283 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.01  E-value=1.6e-09  Score=92.96  Aligned_cols=124  Identities=10%  Similarity=-0.040  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------C
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLD--------N  197 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p  197 (270)
                      +..+...|..++..|++++|+..|.+++.+.|...      .++.++|.++..+|++++|+..+++++.+.        |
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            34567788999999999999999999998765432      347889999999999999999999999765        3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCCCCCcch
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-----KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ....++..+|.++...|++++|...+++++.+.|..     ..++..++.++...|++.++..
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            345678889999999999999999999999988752     4678888999999999877765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.01  E-value=2.4e-09  Score=96.65  Aligned_cols=124  Identities=14%  Similarity=0.055  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284         132 AVYSKEQGNKLVK-------EGKWG-------EAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD  196 (270)
Q Consensus       132 a~~~~~~g~~~~~-------~g~~~-------~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  196 (270)
                      ...|...|..+..       .|+++       +|+..|++|++ ..|++..+|.++|.++..+|++++|...|++++.++
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~  351 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence            5667788888876       79987       99999999997 899999999999999999999999999999999999


Q ss_pred             CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCCCCcch
Q psy6284         197 NTYV-KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN-RKLNIPLSPIK  255 (270)
Q Consensus       197 p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~-~~~~~~~~a~~  255 (270)
                      |.++ .+|..+|.++...|++++|++.|+++++..|.+...+...+.+. ...|+..++..
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence            9986 69999999999999999999999999999998877776655553 34677666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.00  E-value=3e-09  Score=75.67  Aligned_cols=80  Identities=10%  Similarity=0.085  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAAR  210 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~  210 (270)
                      ..+...|..++..|++++|+..|++++..+|.+..+++++|.++..+|++++|+..|++++.++|.  +..+...+...+
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999874  444555554444


Q ss_pred             HH
Q psy6284         211 RS  212 (270)
Q Consensus       211 ~~  212 (270)
                      ..
T Consensus       100 ~~  101 (115)
T 2kat_A          100 RR  101 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.98  E-value=1e-08  Score=72.03  Aligned_cols=73  Identities=16%  Similarity=0.083  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCTASLKLD-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      ++.+|..++..++|..|+.++++|+...       +.....+..+|.+++.+|+++.|+..++++++++|++..+..++.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            3444444444444444444444444321       233445555555555555555555555555555555555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.97  E-value=1.2e-08  Score=75.48  Aligned_cols=98  Identities=10%  Similarity=-0.086  Sum_probs=87.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS-  212 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-  212 (270)
                      .|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++...  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            688888888999999999999886  789999999999999    89999999999999987  689999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         213 ---LNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       213 ---~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                         .+++++|+..|+++.+.  .++.+...|+
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               89999999999999987  5666666554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.96  E-value=4e-09  Score=90.52  Aligned_cols=124  Identities=11%  Similarity=-0.004  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTY------V  200 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~  200 (270)
                      +......|..++..|++++|+..+.+++...|...     .++.++|.++...|++++|+..+++++.+.|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45567789999999999999999999999887653     378899999999999999999999999876532      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLALE--------PNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .+++.+|.++...|++++|+..|++++++.        |....++..++.++...|++.++..
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            457889999999999999999999999976        3345678889999999999988766

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.93  E-value=1.3e-08  Score=89.70  Aligned_cols=111  Identities=11%  Similarity=-0.008  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p  197 (270)
                      .+....+.+......|+|++|+..|+++|++     .|++   ...+.|+|.+|..+|+|++|+..+++++.+     -|
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            3444555566666789999999999999985     3444   468999999999999999999999999965     34


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q psy6284         198 TY---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAEIELA  241 (270)
Q Consensus       198 ~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~l~  241 (270)
                      ++   ...++++|.+|..+|++++|+..|++|+++     .|+++.......
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            44   557999999999999999999999999885     578877665444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.92  E-value=1.6e-08  Score=70.98  Aligned_cols=77  Identities=13%  Similarity=-0.008  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-------PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ  204 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  204 (270)
                      +..++..|..+++.|+|..|+.-|.+|++..       +....++.++|.|+.++|+++.|+..+++++.++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4467889999999999999999999999864       235789999999999999999999999999999999999988


Q ss_pred             HHHH
Q psy6284         205 RRAA  208 (270)
Q Consensus       205 ~~g~  208 (270)
                      +++.
T Consensus        85 n~~~   88 (104)
T 2v5f_A           85 NLKY   88 (104)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            8873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.92  E-value=1.2e-08  Score=87.18  Aligned_cols=132  Identities=16%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH-------HHH-HHHH--HHHhcCCC
Q psy6284         132 AVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV-------SAE-ADCT--ASLKLDNT  198 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~-------~A~-~~~~--~al~~~p~  198 (270)
                      |..++-+|..++..++   +.+|+.+|++|++++|+++.++..++.||.....+.       +++ ..+.  .++..+|.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            4566677777776554   589999999999999999999999999986432211       111 1222  23356788


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      .+.++..+|.++...|++++|+..+++++.++|+ ..++..++.++...|++.+++.   ..+..+|..
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999888889999999999999999974 7788889999999999988877   777777754

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.89  E-value=2.9e-08  Score=71.41  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS---AEADCTASLKLD-N-TYVKAYQRRAAARRSLNHFEDARK  221 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~a~~~~g~~~~~~g~~~~A~~  221 (270)
                      ....+...|.+.+...+....+.+++|.|+.+......   ++..++..+..+ | .....+|.+|..++++|+|++|+.
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34566777888888888999999999999999887666   999999999887 5 578899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         222 DILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       222 ~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      +++.+|+.+|+|.+|......+..++
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999888876553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.88  E-value=5.4e-08  Score=86.94  Aligned_cols=119  Identities=10%  Similarity=-0.053  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      .+..+...|..++.    .+++++|+..|.++.+.  .++.+++++|.+|..    .+++++|+.+|++++..  +++.+
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  149 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG  149 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            45667888999888    89999999999998864  578889999999988    88999999999998775  57889


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      ++.+|.+|..    .+++++|++.|+++++.  +++.++..++.++..    .+++.+++.
T Consensus       150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  208 (490)
T 2xm6_A          150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ  208 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            9999999987    78999999999999876  688999999998887    566555555

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.87  E-value=1.5e-08  Score=89.92  Aligned_cols=107  Identities=16%  Similarity=0.057  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         134 YSKEQGNKLVKEG---KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM----KNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       134 ~~~~~g~~~~~~g---~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      .+...|..+...|   ++++|+..|+++.+..|.....++++|.+|...    +++++|+.+|+++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            4566777777777   788888888888887777777777777777554    57777777777776   7777777777


Q ss_pred             HHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         207 AAA-R--RSLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       207 g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      |.+ +  ...+++++|+..|+++++.  +++.+...|+.++.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            777 3  4577777777777777743  47777777777776

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.86  E-value=6.5e-08  Score=86.39  Aligned_cols=119  Identities=8%  Similarity=-0.019  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      .+..+...|..+..    .+++++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|++++..  .++.+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a  185 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS  185 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            34567788999888    88999999999999775  678999999999988    88999999999999886  57899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      ++.+|.+|..    .+++++|+..|+++++.  +++.+...++.++..    .+++.+++.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~  244 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRV  244 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            9999999998    89999999999999875  678999999999886    455555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.85  E-value=4.1e-08  Score=86.49  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-----PHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DNT  198 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~  198 (270)
                      +....+....+.++|+|++|+..|+++++..     |++   ...+.|+|.+|..+|+|++|+..+++++.+     -|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            4455666777889999999999999999852     344   468999999999999999999999999965     344


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHh
Q psy6284         199 Y---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAEI---ELAELNRKL  247 (270)
Q Consensus       199 ~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~---~l~~~~~~~  247 (270)
                      +   ...++++|.+|..+|++++|+..|++|+++     .|+++....   +|+.+...+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            4   457999999999999999999999999874     678775554   455555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.82  E-value=2.7e-08  Score=73.57  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS----LNHFEDARK  221 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~  221 (270)
                      +++++|+..|+++.+..  ++.+.  +|.+|...+.+++|+.+|+++...  .++.+++++|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            47899999999999886  44444  999999999999999999999987  689999999999998    899999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284         222 DILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK  255 (270)
Q Consensus       222 ~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~  255 (270)
                      .|+++.+.  .++.+...|+.++..    .++..+++.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~  118 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK  118 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            99999987  789999999999987    555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.73  E-value=8.8e-08  Score=84.96  Aligned_cols=102  Identities=10%  Similarity=-0.027  Sum_probs=81.6

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         136 KEQGNKLVKE----GKWGEAIEKYNVAIQTYPHDAVFFANRALC-F--LKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       136 ~~~g~~~~~~----g~~~~A~~~y~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...|..+...    +++++|+..|+++.   |.++.+++++|.+ +  ...+++++|+.+|++++..  .++.+++.+|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            5667776554    68888888888887   8888888888888 4  4678888888888888754  47888888888


Q ss_pred             HHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         209 ARRSLN-----HFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       209 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      +|. .|     ++++|+.+|+++.   |+++.+...|+.++..
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            887 55     8888888888888   8888888888887765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.64  E-value=1.4e-07  Score=77.57  Aligned_cols=86  Identities=13%  Similarity=0.090  Sum_probs=80.0

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q psy6284         147 KWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKM-----KNYVSAEADCTASLKLDNTY-VKAYQRRAAARRS-LNHFE  217 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~-~g~~~  217 (270)
                      ....|...++++++++|+  +..+|..+|..|...     |+.+.|..+|++++.++|+. ..+++.+|..++. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            367899999999999999  678999999999996     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHHHhhCCC
Q psy6284         218 DARKDILKVLALEPN  232 (270)
Q Consensus       218 ~A~~~~~~al~~~p~  232 (270)
                      +|.+.+++++..+|.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999999887

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.62  E-value=1.2e-07  Score=83.00  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN----------------  197 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------------  197 (270)
                      .+...|..++..|.|++|+.+|.++        ..|..+|.|+.++|+|++|++++.++.  +|                
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence            5667788888888888888888766        357778888888888888888887772  22                


Q ss_pred             -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         198 -----------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       198 -----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                                 .++.-...+...|...|++++|+..+++++.+++.+..++..++.++.+-
T Consensus       194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                       11112223446788889999999999999999999999999999988754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.61  E-value=3.3e-07  Score=62.91  Aligned_cols=68  Identities=15%  Similarity=-0.014  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284         132 AVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  199 (270)
                      +..+...|..++..++   ..+|...++++|.++|+++.+++.+|..++..|+|++|+..+++++..+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3456777888876665   7999999999999999999999999999999999999999999999999974

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.56  E-value=6.4e-07  Score=87.69  Aligned_cols=115  Identities=14%  Similarity=0.027  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---------  198 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------  198 (270)
                      ++.....|.+.|..+...|++++|+..|.++     +++..|.+.|.++.++|+|++|++.+..+.+..++         
T Consensus      1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            3344567889999999999999999999775     88899999999999999999999999887755432         


Q ss_pred             ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         199 ------------------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 ------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                                        +...++..|..+...|+|++|+..|.++        ..|..++.++.++|++.+|+.
T Consensus      1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence                              3346778888888899999999888886        478888888888888877776

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.56  E-value=1.8e-07  Score=83.72  Aligned_cols=99  Identities=8%  Similarity=-0.046  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p  197 (270)
                      .+..+.+.|..|..+|+|++|+.+|+++|++     -|++   ...++|+|.+|..+|++++|+..+++|+.+     -|
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~  429 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP  429 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4677888999999999999999999999986     3444   568999999999999999999999999965     45


Q ss_pred             CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         198 TYV---KAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       198 ~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                      +++   ...-.++.++..++.+++|...|.++.+.
T Consensus       430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654   45678899999999999999999988654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.55  E-value=6.1e-07  Score=87.84  Aligned_cols=106  Identities=18%  Similarity=0.151  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN----------------  197 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------------  197 (270)
                      .+...|..++..|+|++|+.+|.++        ..|..+|.|+.++|++++|+++++++...++                
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence            5667999999999999999999996        4799999999999999999999999854443                


Q ss_pred             ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         198 ---------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       198 ---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                               .++.-+..++..|...|.|++|+..|+++|.++|.+...+..++.++.+-
T Consensus      1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                     13445556777888999999999999999999999999999999988764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.55  E-value=5.6e-07  Score=75.34  Aligned_cols=120  Identities=9%  Similarity=-0.125  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHH--
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRR--  206 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~--  206 (270)
                      +.-.|..+...|++++|+..+.++|...|  .+..++..++.+++++|+.+.|...+++....+|+    .......+  
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            35678999999999999999999999887  78899999999999999999999999999999983    23334444  


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         207 AAARRSLN--HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       207 g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |.+....|  ++.+|...|+++....|+.......+. ++..+|++.+|..
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence            44466666  999999999999888887333333333 8889999888766

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.55  E-value=2.3e-06  Score=71.63  Aligned_cols=116  Identities=5%  Similarity=-0.108  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-HHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCC--H
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----D-AVFFANRALCFLKMK--NYVSAEADCTASLKLDNTY--V  200 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~-~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~--~  200 (270)
                      ..+.....+..+.+.|+.+.|.+.+++..+.+|+     + ....+.-|.+.+..|  ++.+|...|+++....|++  .
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~  214 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ  214 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence            4445566788899999999999999999999983     2 333333355566667  8999999999998888873  3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHhCC
Q psy6284         201 KAYQRRAAARRSLNHFEDARKDILKVLAL----------EPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~l~~~~~~~~~  249 (270)
                      ..+++   ++..+|++++|.+.++.+++.          +|+|+.+..++..+...+|+
T Consensus       215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            34444   899999999999999988887          58999999999888888887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.52  E-value=4.7e-07  Score=67.46  Aligned_cols=79  Identities=13%  Similarity=0.010  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEG---KWGEAIEKYNVAIQTY-P-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       132 a~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      .+..++.|..+.+.+   ++.+++..++..++.+ | ++.+++|++|..++++++|++|..+|+++++++|+|..|...+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            456788899999988   7789999999999998 7 5689999999999999999999999999999999999887766


Q ss_pred             HHHH
Q psy6284         207 AAAR  210 (270)
Q Consensus       207 g~~~  210 (270)
                      -.+-
T Consensus       112 ~~ie  115 (152)
T 1pc2_A          112 RLID  115 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.9e-07  Score=81.37  Aligned_cols=121  Identities=13%  Similarity=0.096  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----------------VFFANRALCFLKMKNYVSAEADCTASLKLDN  197 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  197 (270)
                      ..+.|..+.+.|+|++|+..|.++++..|...                 .++.++|.+|..+|++++|++.+.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34557777888888888888888888777542                 3578888888888888888888888887655


Q ss_pred             CCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         198 TYVK------AYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 ~~~~------a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ...+      +...+|.++...|++++|+..+++++.+.+.      -..+...++.++...|++.+++.
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            4322      3445667777778888888888887765432      24677778888888888777655

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=5.1e-07  Score=78.70  Aligned_cols=124  Identities=13%  Similarity=-0.001  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLDN------TY  199 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~  199 (270)
                      ...+.+.|..|+..|+|++|+..|.+++...+...      .+..+++.++...++++.|+..+++++...+      ..
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            34577889999999999999999999888765542      3456677777777888888888888776532      33


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLAL------EPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..++.++|.++...|++++|+..+++++..      .|....++..++.++..+|++.++..
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence            567788888888888888888888887765      33345677788888888888766644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.39  E-value=1.8e-05  Score=57.75  Aligned_cols=85  Identities=15%  Similarity=0.025  Sum_probs=75.4

Q ss_pred             CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284         163 PHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       163 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  238 (270)
                      .-...+.++.|.|+.+...   ..+++..++..+...| .....+|.+|..++++|+|++|+++.+.+|+.+|+|.+|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4567899999999998765   4579999999999888 56789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy6284         239 ELAELNRKL  247 (270)
Q Consensus       239 ~l~~~~~~~  247 (270)
                      ....+..++
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.37  E-value=3.7e-06  Score=69.18  Aligned_cols=134  Identities=8%  Similarity=-0.056  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHHh-hCCCCHHHHHHHHHHHHH---c--------cCHHHHH
Q psy6284         130 ASAVYSKEQGNKLVK------EGKWGEAIEK-----YNVAIQ-TYPHDAVFFANRALCFLK---M--------KNYVSAE  186 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~------~g~~~~A~~~-----y~~al~-~~p~~~~~~~~~a~~~~~---~--------~~~~~A~  186 (270)
                      .+|..++.+|..|..      ...+.+++..     +..++. .+|+++.+++=.|.....   .        +....|.
T Consensus       104 ~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~  183 (301)
T 3u64_A          104 SRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAV  183 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHH
Confidence            345555555555432      2344444432     334443 467777777766666544   1        2357899


Q ss_pred             HHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-CCCCCcch--
Q psy6284         187 ADCTASLKLDNT--YVKAYQRRAAARRSL-----NHFEDARKDILKVLALEPNN-KQAEIELAELNRKL-NIPLSPIK--  255 (270)
Q Consensus       187 ~~~~~al~~~p~--~~~a~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~-~~~~~a~~--  255 (270)
                      ..+++++++||+  +..+|..+|..|...     |+.++|.++|+++++++|+. ..++...+..++.. |++..+..  
T Consensus       184 a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L  263 (301)
T 3u64_A          184 MMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEAL  263 (301)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999  667999999999995     99999999999999999975 99999999998875 77666555  


Q ss_pred             -HhhhcCCC
Q psy6284         256 -VDFLHNPY  263 (270)
Q Consensus       256 -~~~~~~~~  263 (270)
                       +.+...|+
T Consensus       264 ~kAL~a~p~  272 (301)
T 3u64_A          264 DRALAIDPE  272 (301)
T ss_dssp             HHHHHCCGG
T ss_pred             HHHHcCCCC
Confidence             44444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.36  E-value=7.4e-06  Score=59.07  Aligned_cols=84  Identities=15%  Similarity=0.031  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         164 HDAVFFANRALCFLKMKNY---VSAEADCTASLKLDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      -.+.+.++.|.|+.+....   ..++..++..+..+| .....+|.+|..++++|+|++|+++.+.+|+.+|+|.+|...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3567889999999887654   568999999999888 458899999999999999999999999999999999999998


Q ss_pred             HHHHHHHh
Q psy6284         240 LAELNRKL  247 (270)
Q Consensus       240 l~~~~~~~  247 (270)
                      ...+..++
T Consensus       118 k~~Ie~ki  125 (134)
T 3o48_A          118 KSMVEDKI  125 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.30  E-value=5.2e-06  Score=70.85  Aligned_cols=78  Identities=10%  Similarity=0.055  Sum_probs=70.9

Q ss_pred             hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      ..+|.++.++..+|.++...|++++|+..+++++.++| +..+|..+|.++...|++++|++.|.+|+.++|..+ .+..
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~  348 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW  348 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence            56789999999999999999999999999999999997 477889999999999999999999999999999886 3443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.11  E-value=3.4e-06  Score=73.83  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------CCHHHHHHHHHHHHHccCHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-------------------------HDAVFFANRALCFLKMKNYVS  184 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~  184 (270)
                      ..+..+...|..+.+.|+|++|++.|.++.....                         .++.-...+..+|.+.|.+++
T Consensus       146 ~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          146 NNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHH
Confidence            3445677889999999999999999999832100                         112223334578899999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         185 AEADCTASLKLDNTYVKAYQRRAAARRS--LNHFEDARKDILKVLALEP-----NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       185 A~~~~~~al~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |+..+++++.+++.+...+..+|.+|.+  .++..++++.|...+.+.|     ++...|..+.-++...+++..|+.
T Consensus       226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            9999999999999999999999999865  6788899999999999989     899999999999999999887766

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.11  E-value=2.6e-05  Score=58.53  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC--
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---------VFFANRALCFLKMKNYVSAEADCTASLKLD---NTY--  199 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~--  199 (270)
                      .+++....++..|.|+.|+.....++.+..+++         .++..+|.+++..++|..|...|+++|.+.   +.+  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            467778899999999999999999877643332         388999999999999999999999987542   111  


Q ss_pred             --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         200 --------------------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       200 --------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                                          ....|..|.|+..++++++|+..++..- ..-..+.....|+.++
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence                                2577999999999999999999876431 1224556666666553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.92  E-value=2.6e-05  Score=68.60  Aligned_cols=72  Identities=8%  Similarity=0.051  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p  197 (270)
                      .+..+.+.|..|..+|+|++|+.+|+++|++     -|++   ...++|+|.+|..+|++++|+..+++|+.+     -|
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~  418 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK  418 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence            4667888999999999999999999999986     2344   568999999999999999999999999965     46


Q ss_pred             CCHHH
Q psy6284         198 TYVKA  202 (270)
Q Consensus       198 ~~~~a  202 (270)
                      +++..
T Consensus       419 ~Hp~~  423 (433)
T 3qww_A          419 DHPYI  423 (433)
T ss_dssp             TCHHH
T ss_pred             CChHH
Confidence            66543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.86  E-value=3.1e-05  Score=68.10  Aligned_cols=81  Identities=7%  Similarity=-0.079  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN  197 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p  197 (270)
                      .+..+.+.|..|..+|+|++|+.+|.++|.+     -|++   ...++|+|.+|..+|++++|+..+++|+.+     -|
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~  407 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR  407 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4667888999999999999999999999985     2344   568999999999999999999999999965     46


Q ss_pred             CCHH---HHHHHHHHHH
Q psy6284         198 TYVK---AYQRRAAARR  211 (270)
Q Consensus       198 ~~~~---a~~~~g~~~~  211 (270)
                      +++.   .+.+++.+..
T Consensus       408 ~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          408 EHSLIEDLILLLEECDA  424 (429)
T ss_dssp             TSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            6654   3444555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.82  E-value=0.0001  Score=52.85  Aligned_cols=79  Identities=13%  Similarity=0.001  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGE---AIEKYNVAIQTY-P-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~---A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      ....++.|..+.+..+...   +|..+...+... | ..-+++|.+|..++++|+|..|...++.+|+.+|+|..|.-..
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3456777888888887766   999999988876 4 4567999999999999999999999999999999999887766


Q ss_pred             HHHH
Q psy6284         207 AAAR  210 (270)
Q Consensus       207 g~~~  210 (270)
                      ..+-
T Consensus       115 ~~i~  118 (126)
T 1nzn_A          115 RLID  118 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.75  E-value=0.00024  Score=65.93  Aligned_cols=117  Identities=14%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------CCC--
Q psy6284         133 VYSKEQGNKLVKEGKWGEAI-EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----------DNT--  198 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~-~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~--  198 (270)
                      ..|...+..+...|+.++|+ ..|.+|+..+|.+..+|...+......|+++.|...|++++..           .|.  
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~  423 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE  423 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence            34556666666667777776 7777777777777777777777777777777777777777753           142  


Q ss_pred             ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhCC
Q psy6284         199 ---------YVKAYQRRAAARRSLNHFEDARKDILKVLAL-EPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       199 ---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~  249 (270)
                               ...+|...+....+.|+.+.|.+.|.+|++. .+....++...+.+....++
T Consensus       424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred             hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence                     3345666666666667777777777777766 33344555555555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.75  E-value=0.00028  Score=65.56  Aligned_cols=122  Identities=8%  Similarity=-0.108  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT-YPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      .|...+....+.|+.+.|...|.+|+.. .+....+|...|.+-...+ +++.|...|+++++..|+++..|...+....
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4666666667789999999999999987 4455778887777766665 4999999999999999999999989999888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         212 SLNHFEDARKDILKVLALEPN---NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..|+.+.|...|++++...|+   ....|..........|+......
T Consensus       516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999883   56788888888888888755444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.62  E-value=0.00087  Score=48.27  Aligned_cols=78  Identities=6%  Similarity=-0.037  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      ...++-+..+.+..+   ..++|..+...+...|. .-+.++.+|..++++|+|++|..+++.++..+|+|..|.-....
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            356677777777764   45799999999988884 47899999999999999999999999999999999988776655


Q ss_pred             HH
Q psy6284         209 AR  210 (270)
Q Consensus       209 ~~  210 (270)
                      +-
T Consensus       121 Ie  122 (134)
T 3o48_A          121 VE  122 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.61  E-value=0.0011  Score=48.31  Aligned_cols=78  Identities=6%  Similarity=-0.037  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      +..++.+..+.+..+   ..++|..+...+...|. .-+++|.+|..++++|+|.+|..+++.+|+.+|+|..|.-....
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            456777888887765   45799999999998884 56799999999999999999999999999999999988766554


Q ss_pred             HH
Q psy6284         209 AR  210 (270)
Q Consensus       209 ~~  210 (270)
                      +-
T Consensus       120 Ie  121 (144)
T 1y8m_A          120 VE  121 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.32  E-value=0.013  Score=43.19  Aligned_cols=99  Identities=14%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284         149 GEAIEKYNVAIQTYPHD--------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR  220 (270)
Q Consensus       149 ~~A~~~y~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  220 (270)
                      +.-++.|.+|+..-|-.        ..+|.+.|.. ..+++.++|.+.|+.++.+...+++.|...|.--.++|+...|+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            77778899999877653        3467777655 67799999999999999998889999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         221 KDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +.+.+++-+.|...+..... ....+.|.
T Consensus       115 kILg~AiG~~~k~~~~le~a-~~nl~~~~  142 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEMLEIA-LRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHTTCBCHHHHHHH-HHHHHTTC
T ss_pred             HHHHHHhccCCCcHHHHHHH-HHhhhcCC
Confidence            99999999999887665533 22334444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.29  E-value=0.0091  Score=51.58  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------------AVFFANRALCFLKMKNYVSAEADCT  190 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~  190 (270)
                      +.+...|......|+.+.|+..+.+|+.+....                      ..+...++.+++..|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345566777778899999999999999875221                      1255567788889999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA  228 (270)
Q Consensus       191 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  228 (270)
                      +++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.23  E-value=0.0021  Score=48.13  Aligned_cols=80  Identities=16%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----------------------CHHHHHHHHHHHHHccCHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---PH----------------------DAVFFANRALCFLKMKNYVS  184 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~---p~----------------------~~~~~~~~a~~~~~~~~~~~  184 (270)
                      ..++.+.-.|+.+|.+++|..|...|++||...   +.                      +.++.+.+|.||.+++++++
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            345677888999999999999999999998642   11                      12688999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         185 AEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       185 A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      |+..++.+ -.....++....+|..|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99976432 22335677777777654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.18  E-value=0.014  Score=52.09  Aligned_cols=116  Identities=9%  Similarity=-0.069  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------------------------------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC------------------------------------  175 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~------------------------------------  175 (270)
                      ...|...+..+...|+.+.|...|.+|+.. |.+...+...+..                                    
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            345777788888899999999999999999 9876554433322                                    


Q ss_pred             ----HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         176 ----FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-HFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       176 ----~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                          ..+.++.+.|...|.++ ...+.....|...|..-...+ +.+.|...|+.+++.-|+++..+.........+|+
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence                22356677888888888 433345566666676665555 58889999999998888888776666555555554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.13  E-value=0.029  Score=42.17  Aligned_cols=98  Identities=13%  Similarity=0.018  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c---------------CCCC
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--L---------------DNTY  199 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p~~  199 (270)
                      -.+..++-.|+|..|+-.+     ..-+.+.+.+..++||.++++|..|+.+.++.+.  .               +|.+
T Consensus        38 L~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D  112 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD  112 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred             hhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence            3478889999999887664     3446788899999999999999999999999992  2               3444


Q ss_pred             HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         200 VKA-YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       200 ~~a-~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      ... +.-+|..+...|+-++|+.+|.......|=.+.+-+.
T Consensus       113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl  153 (242)
T 3kae_A          113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL  153 (242)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence            444 4456999999999999999999999999877666543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.63  E-value=0.015  Score=51.87  Aligned_cols=80  Identities=13%  Similarity=-0.034  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      ++..+|.+......+..|..+|.+|+.+.|++..+|..+|.+....|+.-+|+-+|.+++....-.+.+..+|..+..+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            45567777777777788888888888888888888888888888888888888888888888777888888888887664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0071  Score=56.51  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL  227 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  227 (270)
                      ++..-+..++..++|+-|+.+..+|+..-|.....|+.++.+|..+|+|+.|+-.++-|-
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            444456667788999999999999999999999999999999999999999998888773

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.47  E-value=0.068  Score=47.56  Aligned_cols=113  Identities=8%  Similarity=-0.107  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      .|..-+....+.++.+.|...|.+| ...+.....|...|..-...+ +.+.|...|+.++...|+.+..+...+.....
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4555566666778899999999999 433335567777777766666 69999999999999999999888888888889


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL  251 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~  251 (270)
                      .|+.+.|...|+++    +.....|..........|+..
T Consensus       367 ~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~  401 (493)
T 2uy1_A          367 IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSME  401 (493)
T ss_dssp             HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHH
T ss_pred             cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHH
Confidence            99999999999987    345677777776666667643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.013  Score=54.66  Aligned_cols=60  Identities=20%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS  192 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  192 (270)
                      ..+..++..+.++|+|+.|+..-++|+...|.+...|+.|+.||..+|+|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            356677888899999999999999999999999999999999999999999999877665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.33  E-value=0.012  Score=43.35  Aligned_cols=94  Identities=11%  Similarity=-0.007  Sum_probs=73.2

Q ss_pred             hhCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284         160 QTYPHDAVFFANRALCFLKMKNY------VSAEADCTASLKLDNT--------YVKAYQRRAAARRSLNHFEDARKDILK  225 (270)
Q Consensus       160 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~  225 (270)
                      -+.|++++.|.+......+.|+.      +.-++.|++|+..-|.        +...|.+.|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            36899999999999888888998      8899999999987663        24456666654 577999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284         226 VLALEPNNKQAEIELAELNRKLNIPLSPI  254 (270)
Q Consensus       226 al~~~p~~~~a~~~l~~~~~~~~~~~~a~  254 (270)
                      |+.+......+|...+.-..+.|+...|-
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            99998888777777777777777765543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.28  E-value=0.036  Score=49.40  Aligned_cols=80  Identities=13%  Similarity=0.023  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|....-...+..|..+|.+|+.+.|.+...|.-+|.+....++.-+|+-.|.+++.....++.|.-++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999998877788888877777654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.20  E-value=0.071  Score=47.59  Aligned_cols=109  Identities=7%  Similarity=-0.073  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARR  211 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~  211 (270)
                      .+...-..+.+.|++++|+..|.+..+.. .-+...|..+-.+|.+.|+.++|...+++..... ..+...|..+-.++.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            45556667777888888888887766542 2245667677777778888888888887777543 235567777777788


Q ss_pred             HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Q psy6284         212 SLNHFEDARKDILKVLAL--EPNNKQAEIELAEL  243 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~  243 (270)
                      +.|+.++|.+.|++.-+.  .|+ ...+..+...
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~  219 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEW  219 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHH
Confidence            888888888888776543  343 3344444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.96  E-value=0.2  Score=44.65  Aligned_cols=111  Identities=9%  Similarity=-0.018  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                      .+.++.|...|.+..... +-+...|..+-.++.+.|++++|...+++..... ..+...|..+-.+|.+.|+.++|.+.
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            345677777887766542 2366788888899999999999999999988753 33678888888999999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         223 ILKVLALEP-NNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       223 ~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      |....+..- -+...+..+..++.+.|+..++..
T Consensus       163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~  196 (501)
T 4g26_A          163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYK  196 (501)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence            999887643 367888899999999999877765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.80  E-value=0.21  Score=40.50  Aligned_cols=63  Identities=22%  Similarity=0.260  Sum_probs=57.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284         140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA  202 (270)
Q Consensus       140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a  202 (270)
                      ..+++.|+.++|+......++.+|.|......+-..+.-.|+++.|..-++-+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            456889999999999999999999999999999999999999999999999999999977543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.64  E-value=0.078  Score=42.95  Aligned_cols=65  Identities=12%  Similarity=0.020  Sum_probs=59.2

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284         175 CFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE  239 (270)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  239 (270)
                      -+++.+.+++|++.+...++.+|.+......+.+.++-.|+++.|.+-++.+.+++|+....-..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999998655433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.61  E-value=0.37  Score=36.26  Aligned_cols=117  Identities=14%  Similarity=0.115  Sum_probs=85.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      -...++-.+|+.++  |-.+. +.|..+.....++..++-.|+|..|+-.+     ..-+-..+.|..+.||..+.++..
T Consensus         9 I~Ks~kY~dYdt~~--fLsa~-L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkk   80 (242)
T 3kae_A            9 ICKSIRYRDYETAI--FLAAC-LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKK   80 (242)
T ss_dssp             HHHHHHTTCHHHHH--HHHHH-HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhcccccHHH--HHHHH-HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHH
Confidence            34557788999886  33332 45666677778889999999999887754     233457788889999999999999


Q ss_pred             HHHHHHHHH--hh---------------CCCCHHH-HHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         219 ARKDILKVL--AL---------------EPNNKQA-EIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       219 A~~~~~~al--~~---------------~p~~~~a-~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      |+..++..+  +.               ||.|.+- +..++.+...+|+..+++.   +.+.+.|-
T Consensus        81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            999999998  33               4666654 5567888888999999988   55555553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.22  E-value=0.26  Score=42.47  Aligned_cols=92  Identities=10%  Similarity=-0.005  Sum_probs=74.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC----HHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPH--D----AVFFANRALCFLKMKNYVSAEADCTASLKLD---NTY----VKAY  203 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~a~  203 (270)
                      ..|..++..|+|.+|+..+.+.++....  +    .+++.....+|..++++..+...+.++....   +..    ....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6799999999999999999998875322  2    4578888899999999999999998887543   122    3345


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHh
Q psy6284         204 QRRAAARR-SLNHFEDARKDILKVLA  228 (270)
Q Consensus       204 ~~~g~~~~-~~g~~~~A~~~~~~al~  228 (270)
                      ..-|..+. ..++|.+|..+|-.+++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55688889 89999999999999974

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.23  Score=43.27  Aligned_cols=96  Identities=10%  Similarity=-0.021  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH----HHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH---DAVFFANRALCFLKMKNYVSAEADCTASLKLDN--TYV----KAYQR  205 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~a~~~  205 (270)
                      ....|..+++.|+++.|++.|.++......   -...+.....+++..+++..+...+.++-.+-.  .++    .....
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            567899999999999999999999886543   257888888889999999999999999875421  222    34455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284         206 RAAARRSLNHFEDARKDILKVLALE  230 (270)
Q Consensus       206 ~g~~~~~~g~~~~A~~~~~~al~~~  230 (270)
                      .|.++...++|.+|-..|..++.--
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccC
Confidence            6788889999999999998887653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.78  Score=34.67  Aligned_cols=83  Identities=7%  Similarity=-0.012  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      ....|+..|......|+++-|..+|.++=+        +..+..+|...|+-+.-....+.+.... +    +.....++
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~   99 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNT   99 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHH
Confidence            345688888888888888888888877633        3334445555666554333333332222 1    12234556


Q ss_pred             HHcCCHHHHHHHHHHH
Q psy6284         211 RSLNHFEDARKDILKV  226 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~a  226 (270)
                      ..+|+++++++.|.++
T Consensus       100 l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B          100 FYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHC
Confidence            6777888887777544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.48  E-value=0.39  Score=44.74  Aligned_cols=47  Identities=17%  Similarity=0.024  Sum_probs=33.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS  192 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  192 (270)
                      .+...|++++|.+..     ...++...|..+|..+++.++++.|+.+|.++
T Consensus       661 ~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            334556666665543     23456788889999999999999998888875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.38  E-value=0.43  Score=40.99  Aligned_cols=61  Identities=7%  Similarity=0.029  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      .....+..+...|++.+|+..+..++..+|.+..++..+-.++...|+..+|+..|+++-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456678888999999999999999999999999999999999999999999999887653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.96  E-value=2.9  Score=36.54  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCH-
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHD----AVFFANRALCFLKMKNYVSAEADCTASLK---LDNTYV-  200 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~-  200 (270)
                      .+......+..++..|+|.+|...+.....-.  ..+    ...+.....+++..+++..|...++++..   -.+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            34455677999999999999999998876421  111    45788888889999999999999988642   223332 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         201 ---KAYQRRAAARRSLNHFEDARKDILKVLAL  229 (270)
Q Consensus       201 ---~a~~~~g~~~~~~g~~~~A~~~~~~al~~  229 (270)
                         ..+...|..+...++|.+|-.+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               35566788899999999999999999864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.25  E-value=3.5  Score=40.02  Aligned_cols=97  Identities=4%  Similarity=-0.149  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT----YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAA  208 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~  208 (270)
                      .+...-+.+.+.|+.++|...|.+.-+.    ..-+...|+.+-..|.+.|++++|...|++..... .-+...|..+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            4667788899999999999999764322    34567889999999999999999999999988643 247778888888


Q ss_pred             HHHHcCC-HHHHHHHHHHHHhhC
Q psy6284         209 ARRSLNH-FEDARKDILKVLALE  230 (270)
Q Consensus       209 ~~~~~g~-~~~A~~~~~~al~~~  230 (270)
                      ++++.|+ .++|.+.|++-.+..
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            8999998 578889998877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.52  E-value=1.7  Score=42.87  Aligned_cols=111  Identities=16%  Similarity=0.041  Sum_probs=70.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------------CC
Q psy6284         141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----------------------DN  197 (270)
Q Consensus       141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------~p  197 (270)
                      .+...+.++.|..    .+...|.++...+.+|.+++..|++++|..+|.++-.-                       ..
T Consensus       821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~  896 (1139)
T 4fhn_B          821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN  896 (1139)
T ss_dssp             HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred             HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence            4555566655433    34566777777788888888888888888888765311                       01


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHhCCCCCcch
Q psy6284         198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEP-NNKQ----AEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~----a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+..|+.....+...+.++.+++.-+.|++..+ ++..    .|..+=.....+|++.+|..
T Consensus       897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            1223455555666677788888888888877654 3332    44555566677788777755

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.03  E-value=1.1  Score=41.67  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVA  158 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~a  158 (270)
                      ...|.+.|..+.+.|+++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            456889999999999999999999986

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=89.88  E-value=1.1  Score=29.33  Aligned_cols=34  Identities=32%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      -+..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456777888899999999999999999999874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.62  E-value=4.3  Score=30.61  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD--------NTYVKAYQRRAAAR  210 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~  210 (270)
                      -......|+++.|.+..+..     ++...|..+|..-+..|+++-|..+|.++-..+        -.+...+-.++...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA   86 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA   86 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45567889999998886553     678899999999999999999999998754322        24555566777777


Q ss_pred             HHcCCHHHHHHHH
Q psy6284         211 RSLNHFEDARKDI  223 (270)
Q Consensus       211 ~~~g~~~~A~~~~  223 (270)
                      ...|++.-|...+
T Consensus        87 ~~~g~~n~af~~~   99 (177)
T 3mkq_B           87 QTREDFGSMLLNT   99 (177)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHCccHHHHHHHH
Confidence            7788877776554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.40  E-value=1  Score=29.44  Aligned_cols=33  Identities=33%  Similarity=0.202  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      +..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus         8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            446667888899999999999999999998874

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.96  E-value=1  Score=40.00  Aligned_cols=85  Identities=12%  Similarity=0.007  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDN--TY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------  234 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------  234 (270)
                      ..++..+-..|+..+.|++|.....++.-...  .+   ...+|..|.++.-.++|.+|.++|..|++.-|.+.      
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr  310 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL  310 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence            45677777888999999999999999852221  11   45678889999999999999999999999888653      


Q ss_pred             -HHHHHHHHHHHHhCCC
Q psy6284         235 -QAEIELAELNRKLNIP  250 (270)
Q Consensus       235 -~a~~~l~~~~~~~~~~  250 (270)
                       .++..+..+...+|..
T Consensus       311 ~~a~K~lI~V~LLlG~i  327 (523)
T 4b4t_S          311 QQSNKLHCCIQLLMGDI  327 (523)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhHHhhcCCC
Confidence             3444445555556773

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.97  E-value=3.6  Score=40.47  Aligned_cols=114  Identities=7%  Similarity=0.009  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh---C--------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQT---Y--------------------PHDAVFFANRALCFLKMKNYVSAEADCTA  191 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~---~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  191 (270)
                      .+-+|..++..|++++|..+|.++-.-   .                    ...+..|+....++.+.+.++.+++....
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367899999999999999999887321   0                    01124566677788888999999999999


Q ss_pred             HHhcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         192 SLKLDN-TYV----KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       192 al~~~p-~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      |+...+ +..    ..|.++-..+..+|+|++|...+...-... .-......+-..+++.|.
T Consensus       925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCC
T ss_pred             HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCC
Confidence            998654 333    257778888999999999988875443222 224444445444555443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.64  E-value=8.5  Score=37.10  Aligned_cols=97  Identities=20%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCC-------------------
Q psy6284         138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDN-------------------  197 (270)
Q Consensus       138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p-------------------  197 (270)
                      ....+...|.++-|..    .+...|.++-.-|.+|.+++..|++++|..+|++|-. +..                   
T Consensus       816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            3566777888876543    4678899988889999999999999999999987652 111                   


Q ss_pred             -C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHH
Q psy6284         198 -T--YVKAYQRRAAARRSLNHFEDARKDILKVLAL-EPNNKQAEI  238 (270)
Q Consensus       198 -~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~  238 (270)
                       .  ....|+.....+...+-++-+++..+.||.. +++++....
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~  936 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI  936 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence             1  1224556677778899999999999999974 566666443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=85.15  E-value=3.8  Score=37.41  Aligned_cols=101  Identities=7%  Similarity=-0.081  Sum_probs=65.5

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                      +..+...++...+.+......++...-...+.+ ++.+++..|...+.+.-..........|-+|.++..+|+.++|...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~  341 (618)
T 1qsa_A          263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI  341 (618)
T ss_dssp             CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCChHHHHHHHhccccCCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHH
Confidence            344424455566666554443333333333343 4679999999998776554445788899999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         223 ILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      |+++..  +.+  .|-.++  ..++|..
T Consensus       342 ~~~~a~--~~~--fYg~lA--a~~Lg~~  363 (618)
T 1qsa_A          342 LHQLMQ--QRG--FYPMVA--AQRIGEE  363 (618)
T ss_dssp             HHHHHT--SCS--HHHHHH--HHHTTCC
T ss_pred             HHHHhc--CCC--hHHHHH--HHHcCCC
Confidence            999875  332  233333  4456654

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=85.14  E-value=4.5  Score=26.51  Aligned_cols=48  Identities=17%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHH-HHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFF-ANRALCFL  177 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~-~~~a~~~~  177 (270)
                      ..++.+...|..+|+.++|.+|+..|+++.....+.  ..++ +.++.|.-
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k  101 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999998654332  2233 55666643

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.80  E-value=2.1  Score=28.50  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus        13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35667788889999999999999999988874

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.63  E-value=2  Score=28.24  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .+..+..+|...-..|+|++|+.+|..+++.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456777888889999999999999998874

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.17  E-value=17  Score=30.30  Aligned_cols=95  Identities=12%  Similarity=0.061  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC------------------------CCCHHHHHHHHHHHHHccC---
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAI-QTY------------------------PHDAVFFANRALCFLKMKN---  181 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al-~~~------------------------p~~~~~~~~~a~~~~~~~~---  181 (270)
                      +.-+.++...+.|.++++|++|++.+-.+- .+.                        |-+......+..++.....   
T Consensus        33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p  112 (336)
T 3lpz_A           33 EAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP  112 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence            334456666777778888888877543322 221                        1122233333333322221   


Q ss_pred             -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284         182 -----YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL  224 (270)
Q Consensus       182 -----~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  224 (270)
                           ..+|+.+..+.=...-.++..+..+|..+..-+++.+|..+|-
T Consensus       113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence                 1233444333111223678899999999999999999998873

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=84.08  E-value=2.4  Score=27.59  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      +..|..+..+|...=..|+|++|+.+|..+++.
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345666778888888999999999999998874

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=83.66  E-value=18  Score=30.89  Aligned_cols=85  Identities=12%  Similarity=0.040  Sum_probs=58.7

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHH---
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKL----DN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALE---PNNKQAEI---  238 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~----~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~---  238 (270)
                      .+|..|+..|+|.+|+..+.+.+.-    |.  .-...+..-..+|..++++.++...+.++....   +.++....   
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999988888753    21  124567777888999999999999999887653   23343332   


Q ss_pred             -HHHHHHH-HhCCCCCcch
Q psy6284         239 -ELAELNR-KLNIPLSPIK  255 (270)
Q Consensus       239 -~l~~~~~-~~~~~~~a~~  255 (270)
                       .-|.++. ..+++..|..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~  202 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFS  202 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHH
Confidence             2333344 4566655543

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=83.42  E-value=18  Score=29.93  Aligned_cols=103  Identities=20%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CH----HH--------HHHHHHHHH-HccCH-----HHHHHHHH--
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DA----VF--------FANRALCFL-KMKNY-----VSAEADCT--  190 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~----~~--------~~~~a~~~~-~~~~~-----~~A~~~~~--  190 (270)
                      ....|..++..|++++|+..|+.+|-.-|-    +.    ++        -|-+|.-.- ..++.     +.....++  
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            356799999999999999999999986542    21    11        222222211 11111     22212122  


Q ss_pred             ---HHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284         191 ---ASLKLDNTYVKAYQRRAAA-RRSLNHFEDARKDILKVLALEPNNKQAE  237 (270)
Q Consensus       191 ---~al~~~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~  237 (270)
                         ....+.|.+...-++.|+. .++.++|..|...-++.|++.|....+-
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~  235 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQ  235 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence               2224456555555556655 4689999999999999999998755433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.77  E-value=11  Score=27.31  Aligned_cols=88  Identities=16%  Similarity=0.021  Sum_probs=56.9

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6284         145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCF-LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDI  223 (270)
Q Consensus       145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~  223 (270)
                      -|+...-+.+|-+.   +-.+  -|.++|+-+ ..+|.-++-...+...+..++-++..++.+|.+|.++|+..+|.+.+
T Consensus        74 C~NlKrVi~C~~~~---n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           74 CQNLKSVVECGVIN---NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             CSCTHHHHHHHHHT---TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcHHHHHHHHHHh---cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            45555555555332   1111  255566444 34566666556666656777788999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHH
Q psy6284         224 LKVLALEPNNKQAEIE  239 (270)
Q Consensus       224 ~~al~~~p~~~~a~~~  239 (270)
                      .+|.+-  .-++|-..
T Consensus       149 ~~AC~k--G~kEAC~~  162 (172)
T 1wy6_A          149 IEACKK--GEKEACNA  162 (172)
T ss_dssp             HHHHHT--TCHHHHHH
T ss_pred             HHHHHh--hhHHHHHH
Confidence            999864  33444333

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=82.34  E-value=2.8  Score=29.26  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      +..|..+..+|...=..|+|++|+.+|..++++
T Consensus        15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345666777888888889999999999888764

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=81.74  E-value=4.9  Score=25.39  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF  168 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~  168 (270)
                      -...|..+..+|++++|+.+|-+|+..+|+-..+
T Consensus        20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L   53 (73)
T 3ax2_A           20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL   53 (73)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            3567999999999999999999999998876543

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=81.73  E-value=2.5  Score=39.00  Aligned_cols=57  Identities=14%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      -..+....|...+..|+|..|.+....++..+|+|.+|+..++.++.++|-..++.-
T Consensus       448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~~  504 (658)
T 2cfu_A          448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENAG  504 (658)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccChH
Confidence            345677788999999999999999999999999999999999999999988766643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=81.03  E-value=22  Score=34.66  Aligned_cols=85  Identities=7%  Similarity=-0.076  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKL----DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE-PNNKQAEIELA  241 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~  241 (270)
                      ..|..+-.+|.+.|+.++|...+.+....    -.-+...|..+-..+++.|++++|++.|.+-.+.. .-|...++.+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45777888999999999999999765432    24578899999999999999999999999887653 23778888888


Q ss_pred             HHHHHhCCCC
Q psy6284         242 ELNRKLNIPL  251 (270)
Q Consensus       242 ~~~~~~~~~~  251 (270)
                      .++++.|...
T Consensus       208 ~glcK~G~~~  217 (1134)
T 3spa_A          208 QCMGRQDQDA  217 (1134)
T ss_dssp             HHHHHHTCCH
T ss_pred             HHHHhCCCcH
Confidence            8999998863

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=80.95  E-value=6.5  Score=24.84  Aligned_cols=38  Identities=11%  Similarity=0.097  Sum_probs=28.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      .+|..+...|++++|..+|-+|+..-|+-.+....+..
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~   59 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ   59 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            46888888888888888888888888877666555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=80.42  E-value=8.3  Score=35.20  Aligned_cols=118  Identities=7%  Similarity=-0.154  Sum_probs=76.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV----FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...+...+.+.|...+...-...+-+..    .+..+|.-+...+...++...+.++.....+....-+..+.++ .
T Consensus       219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r  297 (618)
T 1qsa_A          219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-G  297 (618)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-H
Confidence            3455556666889999999887654333322    2222332223334356777788777665544444444445554 6


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      .|+++.|...|.+.-.-.+....+.+.++.++..+|+..++..
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~  340 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE  340 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence            7999999999987655444678889999999999999766533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d2gych1	140	c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric	7e-21
d2zjrg1	142	c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco	2e-20
d2j01n1	139	c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus	3e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-13
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-09
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-06
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-04
d1vqoj1	142	c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1j3aa_	142	c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro	0.004

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

 Score = 83.9 bits (207), Expect = 7e-21
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 11  NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
            T  R W++ DA  +     A  +++ L+G+HK  Y P  D GD++IV+N+  +A+ G +
Sbjct: 9   ETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNK 68

Query: 71  WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
              + Y+HHTG+ GG+      ++    P 
Sbjct: 69  RTDKVYYHHTGHIGGIKQATFEEMIARRPE 98

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 82.7 bits (204), Expect = 2e-20
 Identities = 25/86 (29%), Positives = 43/86 (50%)

Query: 15  RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
           + W + DA        A +I+  ++G+H+P + P    GD V+V+N+  +AL G +   +
Sbjct: 10  QNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDK 69

Query: 75  AYFHHTGYPGGVSWTLAWQLHEIDPT 100
            Y  +TGY GG+    A +     P 
Sbjct: 70  VYTRYTGYQGGLKTETAREALSKHPE 95

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

 Score = 74.3 bits (182), Expect = 3e-17
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 15  RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
             W + DA+ +     A  I+  L+G+H+P + P    GD V+V+N+  I + G + +++
Sbjct: 11  PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 70

Query: 75  AYFHHTGYPGGVSWTLAWQLHEIDPT 100
            Y  ++GYPGG+      ++    P 
Sbjct: 71  IYTRYSGYPGGLKKIPLEKMLATHPE 96

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 37/117 (31%), Positives = 59/117 (50%)

Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
           SA   KEQGN+L    K+ EA   Y  AI   P  AV++ NRALC+LKM+    A ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
            +L+LD   VKA+      +  +  +++A  ++ +  +L    +    +      ++
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---------------PHDAVFFAN 171
           +++  A   KE+G    K GK+ +A+ +Y   +                        F N
Sbjct: 10  EKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 69

Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
            A+C+LK++ Y  A   C  +L LD+   K   RR  A+  +N FE A+ D  KVL + P
Sbjct: 70  LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129

Query: 232 NNKQAEIELAELNRKLN 248
            NK A +++    +K  
Sbjct: 130 QNKAARLQIFMCQKKAK 146

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 20/110 (18%), Positives = 42/110 (38%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
            N L ++G   EA + YN A++  P  A    N A    +  N   A      +L++   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           +  A+   A+  +     ++A     + + + P    A   +    +++ 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 6/245 (2%)

Query: 9   QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPG 68
                  +     A       +  +        +        +      +          
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169

Query: 69  YEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEEL-----DKQDSDEDEESDVEE 123
             W       +      ++     +   +DP    A   L     + +  D    + +  
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV 183
             L    + V+         ++G    AI+ Y  AI+  PH    + N A    +  +  
Sbjct: 230 LSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
            AE     +L+L  T+  +    A  +R   + E+A +   K L + P    A   LA +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 244 NRKLN 248
            ++  
Sbjct: 349 LQQQG 353

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-08
 Identities = 24/208 (11%), Positives = 56/208 (26%)

Query: 41  QHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           + +       +   H + +    I                        +      ++   
Sbjct: 78  KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160
                  L      E+ ++   +    +   AV     G     +G+   AI  +  A+ 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
             P+    + N      + + +  A A    +L L   +   +   A         + A 
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 221 KDILKVLALEPNNKQAEIELAELNRKLN 248
               + + L+P+   A   LA   ++  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKG 285

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 8/80 (10%), Positives = 23/80 (28%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E  ++  + G +  A        +  P +       +    + +    +    T ++K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 197 NTYVKAYQRRAAARRSLNHF 216
               +AY       +     
Sbjct: 64  PLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 7/73 (9%), Positives = 20/73 (27%)

Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
             A    +  ++ +AE  C    + +          ++        + +       +   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 231 PNNKQAEIELAEL 243
           P   +A   L  +
Sbjct: 64  PLLAEAYSNLGNV 76

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 4e-10
 Identities = 38/113 (33%), Positives = 67/113 (59%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           K Q N   K   +  AI+ Y+ AI+  P +A+++ NR+L +L+ + Y  A  D T +++L
Sbjct: 14  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           D  Y+K Y RRAA+  +L  F  A +D   V+ ++P++K A+++  E N+ + 
Sbjct: 74  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 126

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 37/111 (33%), Positives = 61/111 (54%)

Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
           KE+GNK +  G   +A++ Y+ AI+  PH+ V ++NR+  + K  +Y  A  D   ++ L
Sbjct: 7   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66

Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
              + K Y R+AAA   LN FE+A++   + L  E NN Q +  L  +  +
Sbjct: 67  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 51.5 bits (122), Expect = 7e-09
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------- 165
           +  D +++ SA   KE+GN+  K+ +  EAI KY  A+  + H                 
Sbjct: 7   DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 66

Query: 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225
                N A C+ K K+Y  A    +  LK+D   VKA  +   A       E+A++++ K
Sbjct: 67  ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 126

Query: 226 VLALEPNNKQAEIELAELNRKLN 248
             +L PNN            KL 
Sbjct: 127 AASLNPNNLDIRNSYELCVNKLK 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 114 DEDEESDVEEEDLDRIASAVYS-KEQGNKLVKEGKWGEAIEKYNVAIQTY---------- 162
           D  E++DV+ +D+D+I       K  GN   K   W  AI+KY   ++            
Sbjct: 8   DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 163 ------PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216
                 P       N   C LKM ++  A   C  +L++D +  KA  RRA   + L  +
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127

Query: 217 EDARKDILKVLALEPNNKQAEIELAELNRKLN 248
           + A  D+ K   + P +K  + EL ++ +K+ 
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
           A+  KE GN   K+  +  A++ Y+ A +  P +  +  N+A  + +  +Y      C  
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 192 SLKLD-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
           ++++            KAY R   +      ++DA     K LA        + +  +  
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK-KCQQAE 122

Query: 245 RKL 247
           + L
Sbjct: 123 KIL 125

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 35/96 (36%)

Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
           Q    + EG+  +A+E    AI+  P DA   ++         ++  A+     S+KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
            Y+    +     ++    +D  +       L  N 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE 97

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)

Query: 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FAN 171
           +++  +   KE+G    KEGK+ +A+ +Y   +    +++ F                 N
Sbjct: 8   EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 67

Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
            A+C LK++ + +A   C  +L+LD+   K   RR  A  ++N FE AR D  KVL L P
Sbjct: 68  LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127

Query: 232 NNKQAEIELAELNRKLN 248
           NNK A+ +LA   +++ 
Sbjct: 128 NNKAAKTQLAVCQQRIR 144

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
           +  A+    +G     +  W  A++ ++         +    N    +  +KN   AE  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKA 58

Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
            T S+  D     AY +R         ++ A KD+ + L     N+  + ++  L  KL 
Sbjct: 59  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 2/125 (1%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G    K+      ++  + +            +             AE+    + +L  +
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPS 184

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDF 258
             + Y + A    S            + +A++     A   L +   K       +K  +
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKW 244

Query: 259 LHNPY 263
             + +
Sbjct: 245 GVSDF 249

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
              DL R  +       G      G++ +A    + A++ +                + +
Sbjct: 4   NTCDLGRFVAEK---TAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDD 48

Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
               +     +  L    V A+  +A A  +         ++  +    P  +    +L 
Sbjct: 49  LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI 108

Query: 242 ELNRKLN 248
                 +
Sbjct: 109 TAYYLSD 115

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 17/108 (15%), Positives = 35/108 (32%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E+G + ++EG    A+  +  A+Q  P     +        + +  + A +     L+L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
                A    A +  + +    A + +   L   P          E  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 16/109 (14%), Positives = 43/109 (39%)

Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
           G      G++ +A++ +  A+   P+D + +               A A    +L+L   
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
           Y+++      +  +L    +A +  L+ L ++  ++    E   ++  +
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 287

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 23/150 (15%)

Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP------------HDAVFFANRA 173
           L  +  A  +     + +  G++ EA      A++                DA   A  A
Sbjct: 3   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 62

Query: 174 LCFLKMKNYVSAEADCTASLKLDNTYVKAYQ-----------RRAAARRSLNHFEDARKD 222
                ++++  A      +L   N   +  Q            RA A   L    +A  +
Sbjct: 63  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 122

Query: 223 ILKVLALEPNNKQAEIELAELNRKLNIPLS 252
             KV+ +    K        +       ++
Sbjct: 123 FKKVVEMIEERKGETPGKERMMEVAIDRIA 152

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 5/114 (4%)

Query: 140 NKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLK--- 194
           N+LV      +  +K+              F     L   +  + +         L    
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 195 LDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
                       A     L  +E A K +  +L  EP N QA+     +++ + 
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 16/84 (19%)

Query: 17  WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
             I DA+       A  +++                G+ V V+N+    + G E +    
Sbjct: 6   DVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVEK 53

Query: 77  FHHTGYPGGVSWTLAWQLHEIDPT 100
           +      G          +   P 
Sbjct: 54  YEKRVDIGN----DNGYFYPKRPD 73

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 8/127 (6%)

Query: 115 EDEESDVEEEDLDRIASAVYSKEQ-------GNKLVKEGKWGEAIEKYNVAIQTYPHDAV 167
            D +   + +  + +   +YS +           L ++ +   A +    AI+    +  
Sbjct: 19  ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 78

Query: 168 FFANRALCFLKM-KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV 226
            +  R +    + K+        TA ++      + +  R      L       + I  +
Sbjct: 79  VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 138

Query: 227 LALEPNN 233
           L  +  N
Sbjct: 139 LNQDAKN 145

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 6/99 (6%), Positives = 25/99 (25%)

Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
           E            ++   Y+  +                   +++ + +  +       +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235
              +        A   L + ++  +    + A++P    
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 4/52 (7%), Positives = 16/52 (30%)

Query: 49  LNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
           +   G+ V+++N+    + G      + +        ++       +     
Sbjct: 21  MLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSD 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d2gych1	140	Ribosomal protein L13 {Escherichia coli [TaxId: 56	99.95
d2j01n1	139	Ribosomal protein L13 {Thermus thermophilus [TaxId	99.95
d2zjrg1	142	Ribosomal protein L13 {Deinococcus radiodurans [Ta	99.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.89
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.89
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.88
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.88
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.68
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.61
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1j3aa_	142	Ribosomal protein L13 {Archaeon Pyrococcus horikos	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d1vqoj1	142	Ribosomal protein L13 {Archaeon Haloarcula marismo	99.54
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.38
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.33
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.17
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.12
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.1
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.94
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.9
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.66
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.65
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.59
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.32
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.01
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.98
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.14
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.4
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.18
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	86.0
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	85.1
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	84.49
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	81.12

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.6e-30  Score=186.56  Aligned_cols=105  Identities=28%  Similarity=0.434  Sum_probs=96.2

Q ss_pred             CchhhhhhccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCC
Q psy6284           1 MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHT   80 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t   80 (270)
                      |+.|.-.  -.++.+.||||||+|++|||+|+.||..|+|||||+|+|+.||||+|+|+||+++.++|.++..+.|+.|+
T Consensus         1 Mkt~~~k--~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNaeki~~tG~K~~~k~y~~~s   78 (140)
T d2gych1           1 MKTFTAK--PETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHT   78 (140)
T ss_dssp             CCCCCSS--SCCTTCCCCCCCCSSSCSHHHHSSSSSSSTTCSSSCCCSSSCCCCCCCCSCSSSCCCCSSCSTTCCCCCCC
T ss_pred             CCcccCC--hhHhCccEEEEeCCCCchHHHHHHHHHHHHhccCCccccccCCCcEEEEEechhhcccCchhhhhhhhccc
Confidence            4445442  23789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchhhhhhhhccCcchhhhhhh
Q psy6284          81 GYPGGVSWTLAWQLHEIDPTLDKACEE  107 (270)
Q Consensus        81 ~y~~g~~~~~~~~l~~~~p~~~~~~~~  107 (270)
                      +||+|....++.+++.+.|+.++....
T Consensus        79 gypgg~k~~~~~~~~~k~P~~il~~aV  105 (140)
T d2gych1          79 GHIGGIKQATFEEMIARRPERVIEIAV  105 (140)
T ss_dssp             SSCSSCCCCCCHHHHTTCSSSSTTTSS
T ss_pred             cCCCCcccccHHHHHhhHHHHHHHHHH
Confidence            999999999999999999998877654

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.3e-28  Score=178.56  Aligned_cols=96  Identities=25%  Similarity=0.407  Sum_probs=91.9

Q ss_pred             cccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhh
Q psy6284          12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLA   91 (270)
Q Consensus        12 ~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~   91 (270)
                      ...+.||||||+|++|||+|+.||+.|+|||||+|+|+.||||+|+|+|++++.++|.++..+.|++|++||||....++
T Consensus         8 ~~~r~W~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~hsgypGg~k~~~~   87 (139)
T d2j01n1           8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL   87 (139)
T ss_dssp             CCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCCCCSSSCCCCCBH
T ss_pred             cccceEEEEeCCCCchHHHHHHHHHHHhccchheeeeccCCCceEEEechhHeeeeccccceeeeeeeccccCccccccH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCcchhhhhhh
Q psy6284          92 WQLHEIDPTLDKACEE  107 (270)
Q Consensus        92 ~~l~~~~p~~~~~~~~  107 (270)
                      .++..++|..++....
T Consensus        88 ~~~~~k~P~~il~~aV  103 (139)
T d2j01n1          88 EKMLATHPERVLEHAV  103 (139)
T ss_dssp             HHHHHSSCSHHHHHHH
T ss_pred             HHhcccCHHHHHHHHH
Confidence            9999999999887665

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.94  E-value=7.3e-28  Score=175.04  Aligned_cols=95  Identities=26%  Similarity=0.388  Sum_probs=91.0

Q ss_pred             ccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhh
Q psy6284          13 FARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAW   92 (270)
Q Consensus        13 ~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~   92 (270)
                      ..+.||||||+|++|||+|+.||..|+|||+|+|+|+.|+||.|+|+|++++.++|.+|.++.|++|++||+|....+..
T Consensus         8 ~~r~W~viDA~~~~lGRlAs~iAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~~tG~K~~~k~y~~htg~pgg~k~~~~~   87 (142)
T d2zjrg1           8 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAR   87 (142)
T ss_dssp             SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEES
T ss_pred             CCccEEEEECCCCchHHHHHHHHHHHhcCcccceeecccCCCEEEEcCCceeEEcCcchhhheehhhcccccccccccHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCcchhhhhhh
Q psy6284          93 QLHEIDPTLDKACEE  107 (270)
Q Consensus        93 ~l~~~~p~~~~~~~~  107 (270)
                      ++..+.|+.++....
T Consensus        88 ~~~~r~P~~ii~~aV  102 (142)
T d2zjrg1          88 EALSKHPERVIEHAV  102 (142)
T ss_dssp             TTTTSCHHHHHHHHH
T ss_pred             HHhccchHHHHHHHH
Confidence            999999999887665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-23  Score=148.73  Aligned_cols=114  Identities=32%  Similarity=0.470  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..++++|+.+++.|+|++|+..|+++|+.+|.++.+|+++|.||..+|++++|+.+|.+++.++|.++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      .+|++++|+..|+++++++|+++.++..++.+..
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999998864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.89  E-value=2.6e-22  Score=151.21  Aligned_cols=130  Identities=30%  Similarity=0.391  Sum_probs=120.3

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHccCH
Q psy6284         119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------AVFFANRALCFLKMKNY  182 (270)
Q Consensus       119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------~~~~~~~a~~~~~~~~~  182 (270)
                      +.+.+...+++..+..+++.|+.+|+.|+|.+|+..|++++...+..                ..+++|+|.||++++++
T Consensus         4 ~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   83 (153)
T d2fbna1           4 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY   83 (153)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhccc
Confidence            44666777889999999999999999999999999999999986643                24789999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         183 VSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      ++|+.+|++++.++|.+.++|+++|.++..+|++++|+.+|+++++++|+|..+...+..+..+++
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.3e-22  Score=150.89  Aligned_cols=122  Identities=32%  Similarity=0.541  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR  206 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  206 (270)
                      +.++.|..++.+|+.+|+.|+|++|+..|+++++++|+++.+|+++|.|++.+|++++|+.+|+++++++|.+..+|+++
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            44577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      |.++..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.5e-22  Score=150.95  Aligned_cols=130  Identities=32%  Similarity=0.480  Sum_probs=121.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHHHH
Q psy6284         121 VEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYVSA  185 (270)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A  185 (270)
                      |.+...+++..+..+++.|+.+|+.|+|++|+..|+++|...|..               ..++.|+|.||+++|++++|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            566777889999999999999999999999999999999998764               25789999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         186 EADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       186 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +.+|+++|.++|+++.+++++|.++..+|++++|+.+|+++++++|+|+.+...++.+..+++..
T Consensus        82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998776554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.88  E-value=1.1e-21  Score=150.01  Aligned_cols=132  Identities=30%  Similarity=0.473  Sum_probs=121.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHH
Q psy6284         119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYV  183 (270)
Q Consensus       119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~  183 (270)
                      +.|.+...+++..+..+++.|+.+|+.|+|.+|+..|++||...|..               ..++.|+|.||++++++.
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            35677778889999999999999999999999999999999875543               347899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       184 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      +|+.+|++++.++|.+.++++++|.++..+|++++|+.+|+++++++|+++.+...++.+...++..
T Consensus        82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999998777654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.6e-21  Score=148.89  Aligned_cols=103  Identities=35%  Similarity=0.508  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+++.|+.+|+.|+|++|+..|+++|+++|.++.+|+++|.||..+|++++|+.+|++++.++|+++.+|+++|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH
Q psy6284         212 SLNHFEDARKDILKVLALEPNNK  234 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~  234 (270)
                      .+|++++|+.+|+++++++|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999998644

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=9.4e-20  Score=139.18  Aligned_cols=122  Identities=27%  Similarity=0.442  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT----------------YPHDAVFFANRALCFLKMKNYVSAEADCTA  191 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  191 (270)
                      .+..+..++..|+.++..|+|.+|+..|+++|.+                +|....++.|+|.|+.++|++++|+..|++
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            4455677899999999999999999999999874                345567899999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       192 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+..++..
T Consensus       103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999877644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-18  Score=127.02  Aligned_cols=115  Identities=20%  Similarity=0.295  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------HHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-------KAY  203 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~  203 (270)
                      .|..+++.|+.+|..|+|++|+.+|+++|+++|+++.+++++|.||..+|+|++|+.+|++++.++|.+.       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999999999999999999999999998664       578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         204 QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      +++|.++..++++++|+.+|++++..+|+ +.+...+..+...
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~  124 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI  124 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            88899999999999999999999999875 5666666666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.2e-18  Score=138.40  Aligned_cols=120  Identities=22%  Similarity=0.170  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA  209 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  209 (270)
                      ..+..++.+|..++..|+|++|+..|+++|+++|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      +..+|++++|+..|+++++++|++..+...++.+....+.
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999988888877776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.9e-18  Score=130.76  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..++++|..++..|+|++|+..|.+   +.|.++.+++|+|.||+.+|++++|+.+|+++++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            345677899999999999999999976   46678899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         211 RSLNHFEDARKDILKVLALEPNN----------------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       211 ~~~g~~~~A~~~~~~al~~~p~~----------------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+|++++|+.+|++++...|.+                .+++..++.++..+|+..+++.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999887654                3678899999999999888766

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-18  Score=124.24  Aligned_cols=112  Identities=16%  Similarity=0.087  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---KNYVSAEADCTASLKLDNTY--VKAYQRRAAARR  211 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~  211 (270)
                      +.++.+...+++++|.+.|++++.++|.++.+++|+|.|+.+.   +++++|+..|++++..+|..  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999999999999874   45678999999999998765  459999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .+|++++|+++|+++|+++|++..|...+..+..+++
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999998887653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.2e-18  Score=140.64  Aligned_cols=118  Identities=10%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       133 ~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ..+..+|..+...| ++++|+..|+++++.+|.+..+|.++|.++..+|++++|+.++++++.++|.+..+|+.+|.++.
T Consensus        78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Confidence            34444555444433 34555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      .+|++++|+++|+++++++|.+..+|..++.++..++..
T Consensus       158 ~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            555555555555555555555555555555554444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.72  E-value=4.1e-17  Score=115.69  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN  214 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  214 (270)
                      .++.|..+++.|++.+|+..|++++..+|+++.+|+++|.++..++++++|+.++++++.++|++..+++.+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy6284         215 HFEDARKDILKVL  227 (270)
Q Consensus       215 ~~~~A~~~~~~al  227 (270)
                      ++++|++.|++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999886

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=133.84  Aligned_cols=133  Identities=10%  Similarity=0.007  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +.+...|..+.+.+.+++|+..|+++|+++|.+..+|+++|.++..++ ++++|+..+++++.++|.+..+|+.+|.++.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            345566888889999999999999999999999999999999988887 4899999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                      .+|++++|++.|.++++++|++..+|..++.++..+|++.+++.   ..+..+|.+.
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH
Confidence            99999999999999999999999999999999999999988877   6666677543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5e-16  Score=120.63  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--------------
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--------------  199 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------------  199 (270)
                      .+++.|..++..|+|++|+..|++||+++|+++.+|+++|.|+.++|++++|+.+|++++...+.+              
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~  117 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL  117 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEE
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhccc
Confidence            578999999999999999999999999999999999999999999999999999999999876543              


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         200 --VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                        ..+++++|.++..+|++++|++.|.+++.+.|+........+
T Consensus       118 ~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_         118 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence              478999999999999999999999999999988644444333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-16  Score=132.35  Aligned_cols=132  Identities=21%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..++..|++++|+..|+++++++|+++.++.++|.++..++++++|+..+++++...|.+..+++.+|.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      .+|++++|+..|+++++++|++..++..++.++..+|++.+|+.   ..+..+|.
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            88888888888888888888888888888888888888888776   44555554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=9.1e-17  Score=119.22  Aligned_cols=107  Identities=14%  Similarity=0.081  Sum_probs=96.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM----------KNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       142 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            44556699999999999999999999999999999854          55689999999999999999999999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         212 SLNH-----------FEDARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       212 ~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .+|+           +++|+++|+++++++|++..++..|+.+....+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            8764           799999999999999999999999998875543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.9e-16  Score=129.94  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+...|..+...|++.+|+..|.+++...|.+...+..+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI  249 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  249 (270)
                      .+|++++|+..|+++++++|+++.++..++.++.++|+
T Consensus       351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999998875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.66  E-value=4.1e-16  Score=117.02  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284         127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------------AVFFANRALCFLKMKNYVSAEADCTASLK  194 (270)
Q Consensus       127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~  194 (270)
                      +.+..+..++..|+.++..|+|++|+..|+++|++.|..            ..+|.|+|.||..+|++++|+.+|++++.
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            345566677888999999999999999999999998764            35899999999999999999999999998


Q ss_pred             cCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284         195 LDN-----------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN  233 (270)
Q Consensus       195 ~~p-----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  233 (270)
                      +.|           ....+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            754           235589999999999999999999999999997654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-15  Score=126.72  Aligned_cols=119  Identities=14%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      ..+...|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|+++.+++.+|.++..
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHHHhCCCC
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQA-----------EIELAELNRKLNIPL  251 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a-----------~~~l~~~~~~~~~~~  251 (270)
                      +|++++|+..|+++++++|++..+           +..++.++..+++..
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999998764           455777777777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.7e-15  Score=120.80  Aligned_cols=117  Identities=11%  Similarity=0.103  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284         147 KWGEAIEKYNVAIQTYP----HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD  222 (270)
Q Consensus       147 ~~~~A~~~y~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  222 (270)
                      +++.|+..+++++...+    ....+++++|.+|..+|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            45678888888887543    34579999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284         223 ILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY  263 (270)
Q Consensus       223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~  263 (270)
                      |+++++++|++..++..++.++..+|++.+++.   ..+..+|.
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999988877   44444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.1e-15  Score=121.49  Aligned_cols=124  Identities=11%  Similarity=-0.014  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------------
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-------------  198 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------  198 (270)
                      +..+...|..++..|++++|+..|.++++++|++..++.++|.++..+|++++|+..+++++..+|.             
T Consensus        53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (323)
T d1fcha_          53 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG  132 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhh
Confidence            4456666666666666666666666666666666666666666666666666666666666655442             


Q ss_pred             --------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284         199 --------------------------------------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL  240 (270)
Q Consensus       199 --------------------------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  240 (270)
                                                            .+.+++.+|.++..+|++++|+..|++++..+|++..++..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  212 (323)
T d1fcha_         133 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL  212 (323)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh
Confidence                                                  123455566666667777777777777777777777777777


Q ss_pred             HHHHHHhCCCCCcch
Q psy6284         241 AELNRKLNIPLSPIK  255 (270)
Q Consensus       241 ~~~~~~~~~~~~a~~  255 (270)
                      +.++..+|++.+|+.
T Consensus       213 g~~~~~~g~~~~A~~  227 (323)
T d1fcha_         213 GATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             hhcccccccchhHHH
Confidence            777777777666655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=103.50  Aligned_cols=97  Identities=20%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284         168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL  247 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  247 (270)
                      -+...|..++..|+|++|+..|++++..+|.++.+|+.+|.++..+|++++|+.+|.++++++|+++.++..++.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcch---HhhhcCCCc
Q psy6284         248 NIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       248 ~~~~~a~~---~~~~~~~~~  264 (270)
                      |++.+|+.   ..+..+|..
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCC
Confidence            99999988   556566643

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=3.9e-16  Score=112.91  Aligned_cols=78  Identities=12%  Similarity=-0.024  Sum_probs=60.0

Q ss_pred             EEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhcc
Q psy6284          18 HIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEI   97 (270)
Q Consensus        18 ~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~~   97 (270)
                      -||||+|++|||+|+.||+.|.            +||+|+|+||+++.+||.++..+.|+.|++|+++.......+++.+
T Consensus         2 ~vIDA~g~~lGRLAs~vAk~L~------------~Gd~ViVvNaeki~~tG~K~~~k~~~~~~~~~g~~~~~~~~~~~~~   69 (142)
T d1j3aa_           2 RIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPK   69 (142)
T ss_dssp             EEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCC
T ss_pred             EEEeCCCCchHHHHHHHHHHHh------------CCCeEEEEechhheecCcchhhhhhhhhhcccccccCcchhhhccc
Confidence            4899999999999999999995            9999999999999999999999999999999999998888888888


Q ss_pred             Ccchhhhhhh
Q psy6284          98 DPTLDKACEE  107 (270)
Q Consensus        98 ~p~~~~~~~~  107 (270)
                      .|+.++....
T Consensus        70 ~P~~il~~aV   79 (142)
T d1j3aa_          70 RSDEIVRRTI   79 (142)
T ss_dssp             SHHHHHHHHH
T ss_pred             ChHHHHHHHH
Confidence            9988876554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=1.4e-14  Score=102.39  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ..++++|.+++..|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcch
Q psy6284         247 LNIPLSPIK  255 (270)
Q Consensus       247 ~~~~~~a~~  255 (270)
                      +|+..+|+.
T Consensus        97 ~g~~~~A~~  105 (112)
T d1hxia_          97 EHNANAALA  105 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999888876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-14  Score=112.70  Aligned_cols=91  Identities=16%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284         165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN  244 (270)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  244 (270)
                      +...+...|.+++..|+|++|+..|++++.++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCcch
Q psy6284         245 RKLNIPLSPIK  255 (270)
Q Consensus       245 ~~~~~~~~a~~  255 (270)
                      ..+|++.+|+.
T Consensus        83 ~~l~~~~~A~~   93 (201)
T d2c2la1          83 LEMESYDEAIA   93 (201)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999999877

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.54  E-value=3.9e-16  Score=112.34  Aligned_cols=76  Identities=16%  Similarity=-0.013  Sum_probs=66.3

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhh
Q psy6284          16 IWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLH   95 (270)
Q Consensus        16 ~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~   95 (270)
                      .|+||||+|++|||+|+.||++|.            +||.|+|+||+++.+||.++..+.|++|++++++..+.    .+
T Consensus         5 k~ivIDA~~~~lGRLAs~vAk~l~------------~Gd~ViVvNaeki~itG~k~~~k~~y~~~~~~g~~kg~----~~   68 (142)
T d1vqoj1           5 ADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY----FY   68 (142)
T ss_dssp             CSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC----CC
T ss_pred             ceEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEChhhcccCcchhhhheeeeeecCCCccce----eh
Confidence            579999999999999999999997            89999999999999999999999999999999987643    34


Q ss_pred             ccCcchhhhhhh
Q psy6284          96 EIDPTLDKACEE  107 (270)
Q Consensus        96 ~~~p~~~~~~~~  107 (270)
                      .+.|+.++....
T Consensus        69 ~r~P~~il~raV   80 (142)
T d1vqoj1          69 PKRPDGIFKRTI   80 (142)
T ss_dssp             CCSHHHHHHHHH
T ss_pred             hcCHHHHHHHHH
Confidence            577777766544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-14  Score=106.53  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      ..+...|..++..|+|++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcch---HhhhcCCCc
Q psy6284         247 LNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       247 ~~~~~~a~~---~~~~~~~~~  264 (270)
                      +|++.+++.   ..+..+|.+
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC
T ss_pred             cCCHHHHHHHHHHHHHcCCCC
Confidence            999999877   555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=94.26  Aligned_cols=79  Identities=14%  Similarity=-0.000  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ  204 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  204 (270)
                      ++.+++.|..+++.|+|.+|+..|++|+++.|.+       ..++.++|.|+.++|++++|+..++++++++|++..+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            3456777888888888888888888777765443       345666666666666666666666666666666666666


Q ss_pred             HHHHHH
Q psy6284         205 RRAAAR  210 (270)
Q Consensus       205 ~~g~~~  210 (270)
                      +++...
T Consensus        85 Nl~~~~   90 (95)
T d1tjca_          85 NLKYFE   90 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.1e-13  Score=93.15  Aligned_cols=83  Identities=16%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  238 (270)
                      ++-++++|.+++..|+|.+|+.+|++|+.+.|.+       ..+++++|.++..+|++++|+..|+++|+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4567899999999999999999999999886543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q psy6284         239 ELAELNRKLN  248 (270)
Q Consensus       239 ~l~~~~~~~~  248 (270)
                      +++.+...++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9998877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.3e-13  Score=96.78  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-------H
Q psy6284         167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI-------E  239 (270)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-------~  239 (270)
                      ..+.++|.+++..|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++.       .
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999998876544       4


Q ss_pred             HHHHHHHhCCCCCcch
Q psy6284         240 LAELNRKLNIPLSPIK  255 (270)
Q Consensus       240 l~~~~~~~~~~~~a~~  255 (270)
                      ++.++..++++.+|+.
T Consensus        85 lg~~~~~~~~~~~A~~  100 (128)
T d1elra_          85 IGNSYFKEEKYKDAIH  100 (128)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            5556666667666665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=2.9e-12  Score=96.78  Aligned_cols=90  Identities=16%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+.++|.++++.|+|++|+..|+++|+++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHcCCHHHHH
Q psy6284         211 RSLNHFEDAR  220 (270)
Q Consensus       211 ~~~g~~~~A~  220 (270)
                      ..+....++.
T Consensus       156 ~~l~~~~~~~  165 (169)
T d1ihga1         156 QKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=1.4e-11  Score=92.93  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR  210 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  210 (270)
                      .+..+.+.|.++++.|+|.+|+..|++++.++|.+..+++++|.|+..+|++++|+.+|.+++.++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHH-HHHHHHHH
Q psy6284         211 RSLNHFED-ARKDILKV  226 (270)
Q Consensus       211 ~~~g~~~~-A~~~~~~a  226 (270)
                      ..++.+.+ ..+.|.+.
T Consensus       143 ~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            77776654 34444333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=3.4e-12  Score=106.57  Aligned_cols=119  Identities=9%  Similarity=0.022  Sum_probs=108.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHc
Q psy6284         137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN--YVSAEADCTASLKLDNTYVKAY-QRRAAARRSL  213 (270)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~-~~~g~~~~~~  213 (270)
                      ..+..+...|++.+|+.+|++++..+|.++.+|+++|.++..++.  +++|+..+.+++.++|.+..++ +..|.++...
T Consensus        78 ~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~  157 (334)
T d1dcea1          78 TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (334)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc
Confidence            334455667779999999999999999999999999999988875  8999999999999999999886 5678999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++++|+..++++++++|++..++..++.++..+|++.+++.
T Consensus       158 ~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999999999999988765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=7.2e-12  Score=93.07  Aligned_cols=83  Identities=7%  Similarity=0.032  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+.+.|..+++.|+|++|+..|+++|+++|.+..+|+++|.++..+|++++|+.+|++++.++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44677899999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             HcC
Q psy6284         212 SLN  214 (270)
Q Consensus       212 ~~g  214 (270)
                      .++
T Consensus       147 kl~  149 (153)
T d2fbna1         147 KLK  149 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=4e-11  Score=91.32  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHH
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------------AVFFANRALCFLKMKNYVSAEAD  188 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~  188 (270)
                      ..+.+...|..++..|++++|+..|.+|+.+.+..                      ..++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34568889999999999999999999999997654                      24789999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q psy6284         189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV-------LALEPN  232 (270)
Q Consensus       189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-------l~~~p~  232 (270)
                      +++++.++|.+..+|..++.++..+|++.+|++.|+++       +-++|.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999999999999998       557775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9.3e-12  Score=94.12  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+.+.|.++++.|+|++|+.+++++|.++|+++.+++++|.|+..+|++++|+.+|++++.++|++..+...++.+..
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HcCCHHHHH
Q psy6284         212 SLNHFEDAR  220 (270)
Q Consensus       212 ~~g~~~~A~  220 (270)
                      .+++..+..
T Consensus       142 ~~~~~~~~e  150 (170)
T d1p5qa1         142 RIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.7e-12  Score=113.36  Aligned_cols=120  Identities=12%  Similarity=-0.052  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      +..+...|..+.+.|++.+|+..|.+++..+|.  .++.++|.++..++++++|+.+|.+|+.++|++..+|+.+|.++.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             -----------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            445677899999999999999999999988764  578999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      ..|++.+|+.+|.+++.++|..+.|+.+|+.+..+..+..+.
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~  239 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE  239 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999999999999999887665443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1.2e-10  Score=96.90  Aligned_cols=122  Identities=10%  Similarity=0.044  Sum_probs=102.5

Q ss_pred             HHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284         143 VKEGK-WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN----------YVSAEADCTASLKLDNTYVKAYQRRAAARR  211 (270)
Q Consensus       143 ~~~g~-~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  211 (270)
                      ...+. .++|+..|.++|+.+|++..+|..++.++..++.          +++|+.++++++..+|.+..+|+.+|.++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            34444 4899999999999999999999999988776554          789999999999999999999999999998


Q ss_pred             HcCC--HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284         212 SLNH--FEDARKDILKVLALEPNNKQAEI-ELAELNRKLNIPLSPIK---VDFLHNPYH  264 (270)
Q Consensus       212 ~~g~--~~~A~~~~~~al~~~p~~~~a~~-~l~~~~~~~~~~~~a~~---~~~~~~~~~  264 (270)
                      .+++  +++|+..++++++++|.+..++. .++.++...+...+++.   ..+..+|.+
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            8765  89999999999999999998875 56677777788777665   444555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.2e-11  Score=101.31  Aligned_cols=125  Identities=10%  Similarity=0.005  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP------HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-----  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----  199 (270)
                      .+..+.+.|+.+...|+|++|+.+|.+++++.+      ....+|.++|.||..++++++|+.++++++.+.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            355688889999999999999999999998732      234689999999999999999999999999886644     


Q ss_pred             -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 -VKAYQRRAAARRS-LNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 -~~a~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                       ..++..+|.++.. .|++++|++.|++++++.+.+      ..++..++.++..+|++.+|+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence             5688889988865 699999999999999875432      4568889999999999988877

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=88.30  Aligned_cols=96  Identities=9%  Similarity=-0.032  Sum_probs=84.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q psy6284         170 ANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN---HFEDARKDILKVLALEPNN--KQAEIELAELN  244 (270)
Q Consensus       170 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~  244 (270)
                      -+++..+...+++++|.+.|++++.++|.++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++.++.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            467788889999999999999999999999999999999998744   5567999999999999876  45899999999


Q ss_pred             HHhCCCCCcch---HhhhcCCCcc
Q psy6284         245 RKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       245 ~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                      ..+|++.+|+.   +.+..+|.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            99999999988   7777888653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=7.3e-11  Score=86.70  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284         176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL----------NHFEDARKDILKVLALEPNNKQAEIELAELNR  245 (270)
Q Consensus       176 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  245 (270)
                      +.+++.|++|+..|++++.++|+++.+++++|.++..+          +.+++|+..|+++++++|++..++..++.++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            55778899999999999999999999999999999854          55689999999999999999999999999998


Q ss_pred             HhCCC
Q psy6284         246 KLNIP  250 (270)
Q Consensus       246 ~~~~~  250 (270)
                      .+|..
T Consensus        87 ~~g~~   91 (145)
T d1zu2a1          87 SFAFL   91 (145)
T ss_dssp             HHHHH
T ss_pred             Hcccc
Confidence            87653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=4.3e-10  Score=91.91  Aligned_cols=126  Identities=13%  Similarity=0.063  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCC----
Q psy6284         130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLK-MKNYVSAEADCTASLKLDNT----  198 (270)
Q Consensus       130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~----  198 (270)
                      ..+..+.+.|+++.+.|++++|+..|++++++.+..      ..++.++|.++.. ++++++|+..+++++.+.+.    
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~  154 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            345678889999999999999999999999986654      5688889988865 69999999999999977432    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhCCCCCcch
Q psy6284         199 --YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-------QAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       199 --~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~~~~~~~~~~~a~~  255 (270)
                        ...++..+|.++..+|+|++|+..|++++...|.+.       ..+..++.++...|++..+..
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~  220 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHH
Confidence              355688999999999999999999999999988765       345566777777777766644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=107.76  Aligned_cols=125  Identities=13%  Similarity=-0.050  Sum_probs=81.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      +......+.|..|+..|.+++.++|.+..++.++|.++...+++++|+..+.+++..+|  ..+++++|.++...|++++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHH
Confidence            34444567788999999999999999999999999999999999999999999998876  4689999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL  265 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~  265 (270)
                      |+.+|++|++++|++..++++||.++...|+..+|+.   +.+..+|++.
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence            9999999999999999999999999999999999887   6666666553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.00  E-value=8.5e-11  Score=94.97  Aligned_cols=117  Identities=15%  Similarity=0.062  Sum_probs=100.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      +..+++.|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHHHh-hCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         219 ARKDILKVLA-LEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       219 A~~~~~~al~-~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +...+.+... .+|.+..++...+.+....|+..++..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~  120 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE  120 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence            7666554433 356666777777788888888877765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.1e-09  Score=86.42  Aligned_cols=125  Identities=10%  Similarity=-0.012  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------C
Q psy6284         131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNT------Y  199 (270)
Q Consensus       131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~  199 (270)
                      .++...-+|..++..|++++|+..|+++++..|.+     ..++.++|.++..+|++++|+..+++++.+.+.      .
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            34455567999999999999999999999999987     358899999999999999999999999987543      2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPN--------NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      ..+++.++.++...|++..|...+.+++.+.+.        ...+...++.++...|+...+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~  154 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  154 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH
Confidence            467889999999999999999999999876432        23466778889988888766654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=4.5e-09  Score=73.56  Aligned_cols=82  Identities=16%  Similarity=0.035  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMK---NYVSAEADCTASLKLDNTY-VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA  241 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  241 (270)
                      ....++.|.|+.+..   +.++++..++.++..+|.+ ..++|.+|.+|+.+|+|++|+.+++++|+++|+|..|.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            678899999998764   5678999999999999876 589999999999999999999999999999999999999888


Q ss_pred             HHHHHh
Q psy6284         242 ELNRKL  247 (270)
Q Consensus       242 ~~~~~~  247 (270)
                      .+..++
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.90  E-value=1.1e-09  Score=81.14  Aligned_cols=85  Identities=20%  Similarity=0.119  Sum_probs=74.5

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q psy6284         171 NRALCFLKMKNYVSAEADCTASLKLDNTY------------VKAYQRRAAARRSLNHFEDARKDILKVLALEPN------  232 (270)
Q Consensus       171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------  232 (270)
                      ..|..++..|+|++|+..|++++.+.|..            ..+|.++|.+|..+|++++|+.++++++++.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            44888889999999999999999998764            368999999999999999999999999987552      


Q ss_pred             -----CHHHHHHHHHHHHHhCCCCCcch
Q psy6284         233 -----NKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       233 -----~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                           ...++..++.++..+|++.+|+.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence                 24478899999999999998877

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=6.1e-08  Score=79.39  Aligned_cols=119  Identities=11%  Similarity=-0.059  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-H
Q psy6284         135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR-S  212 (270)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~  212 (270)
                      +...+......|+++.|...|++++...|.+. .+|...+.+....++++.|...|.+++...|.....+...|.... .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            44556666677777777777777777777654 356677777777777777777777777777777777776666543 3


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284         213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP  253 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a  253 (270)
                      .|+.+.|...|+++++.+|++...+...+..+...|+..++
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence            56777777777777777777777777777777776665443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=2.3e-08  Score=75.63  Aligned_cols=90  Identities=11%  Similarity=-0.028  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy6284         166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----------------------VKAYQRRAAARRSLNHFEDARKDI  223 (270)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~~g~~~~A~~~~  223 (270)
                      ...+.+.|......|++++|+..|.+++.+.++.                      ..++..+|.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4578899999999999999999999999987643                      257899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284         224 LKVLALEPNNKQAEIELAELNRKLNIPLSPIK  255 (270)
Q Consensus       224 ~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~  255 (270)
                      +++++++|.+..++..++.++..+|+..+++.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999876

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=2.8e-07  Score=75.34  Aligned_cols=121  Identities=11%  Similarity=-0.081  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284         134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK-MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS  212 (270)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  212 (270)
                      .+...+....+.|+++.|...|.+++...|.+...+...|..... .++.+.|...|++++...|+++..|...+.....
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            466778888889999999999999999999999999999877544 6899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCCCCcc
Q psy6284         213 LNHFEDARKDILKVLALEPNNK----QAEIELAELNRKLNIPLSPI  254 (270)
Q Consensus       213 ~g~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~~~~~~~~a~  254 (270)
                      .|+++.|+..|+++++..|.++    ..|..........|+...+.
T Consensus       216 ~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~  261 (308)
T d2onda1         216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999887553    46777776666667654443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.1e-07  Score=77.63  Aligned_cols=100  Identities=12%  Similarity=-0.032  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK  201 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~  201 (270)
                      +..+...|..+...|++++|...+.+++...|.+    ...+.++|.++..+|++++|+..+++++..      .|....
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            3456678899999999999999999999887765    457888999999999999999999999843      456778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284         202 AYQRRAAARRSLNHFEDARKDILKVLALEP  231 (270)
Q Consensus       202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p  231 (270)
                      +++.+|.++..+|++++|++.|++++++.+
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999855

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.59  E-value=8.6e-08  Score=76.93  Aligned_cols=76  Identities=13%  Similarity=0.043  Sum_probs=69.7

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         175 CFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       175 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      -.+..|++++|+..++++++.+|++..++..+|.+++..|++++|++.|+++++++|++..++..++.++...+..
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            3467899999999999999999999999999999999999999999999999999999999999998887655443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=6.7e-07  Score=62.30  Aligned_cols=78  Identities=6%  Similarity=-0.037  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284         133 VYSKEQGNKLVKEG---KWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA  208 (270)
Q Consensus       133 ~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  208 (270)
                      +..++-|..+.+..   +..+||..+..++..+|.+. ++++++|.+|+++|+|++|..+++++|.++|+|..|...+-.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            35677788887664   45799999999999998775 899999999999999999999999999999999998876655


Q ss_pred             HH
Q psy6284         209 AR  210 (270)
Q Consensus       209 ~~  210 (270)
                      +.
T Consensus       116 Ie  117 (124)
T d2pqrb1         116 VE  117 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.32  E-value=1.3e-05  Score=63.20  Aligned_cols=109  Identities=16%  Similarity=0.091  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAYQRRA  207 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g  207 (270)
                      +..++..|..++.++||++|+.+|+++.+.  .+..+++++|.+|..    ..++..|..++..+....  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            346888999999999999999999999765  688999999999988    779999999999877654  788889999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         208 AARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       208 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      .++..    ..+.+.|...++++....  ...+...++..+..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~  118 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  118 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccC
Confidence            88765    568899999999998764  45556666655544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=5.1e-05  Score=53.53  Aligned_cols=83  Identities=10%  Similarity=-0.061  Sum_probs=64.1

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCC
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS----LNH  215 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~  215 (270)
                      ...++++|+..|+++.+.  .++.+.+++|.+|..    ..++++|+.+|+++...  .++.+.+++|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            345788888888887764  678888888888876    46788888888888765  467888888888876    457


Q ss_pred             HHHHHHHHHHHHhhC
Q psy6284         216 FEDARKDILKVLALE  230 (270)
Q Consensus       216 ~~~A~~~~~~al~~~  230 (270)
                      +++|+..|+++.++.
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            888888888887764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.01  E-value=3.8e-05  Score=60.48  Aligned_cols=105  Identities=17%  Similarity=0.049  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284         132 AVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAY  203 (270)
Q Consensus       132 a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~  203 (270)
                      ...+...|..+..    ..+...+...++.+.+  +.++.+.+++|.++..    .+++++|+.+|+++...  .++.+.
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHH
Confidence            3345566777765    4566777777777664  4678888888888876    66788888888888776  467888


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284         204 QRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAE  242 (270)
Q Consensus       204 ~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  242 (270)
                      +.+|.+|..    ..++++|+++|+++....  +..|...|..
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~  258 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQ  258 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHH
Confidence            888888875    337888888888887764  4444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=6e-05  Score=53.14  Aligned_cols=93  Identities=12%  Similarity=-0.020  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy6284         146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS----LNHFEDARK  221 (270)
Q Consensus       146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~  221 (270)
                      .|+++|+.+|.++.+.  .++.+.++++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            4789999999999876  46667777774  3467899999999999875  689999999999986    568999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284         222 DILKVLALEPNNKQAEIELAELNRK  246 (270)
Q Consensus       222 ~~~~al~~~p~~~~a~~~l~~~~~~  246 (270)
                      .|+++.+.  .++.+...|+.++..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999875  689999999998765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.14  E-value=1.1  Score=35.74  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284         139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED  218 (270)
Q Consensus       139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  218 (270)
                      ...+.+.++|..|.....++     ++...|.....+.....+..-|.. +...+.   .++.-.-..-..+...|.+++
T Consensus        47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~---~~~d~l~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIV---VHADELEELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTT---TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhh---cCHHHHHHHHHHHHHcCChHH
Confidence            34445555555555544433     455667666666666666544322 211112   233344456667788999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284         219 ARKDILKVLALEPNNKQAEIELAELNRKLN  248 (270)
Q Consensus       219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  248 (270)
                      .+..++.++..++.+......++.++.+.+
T Consensus       118 Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_         118 LITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            999999999999999999999999887643

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.40  E-value=0.41  Score=30.43  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      ...|..+..+|..+-..|+|++|+.+|..+++.
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345667788899999999999999999999874

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.18  E-value=0.96  Score=27.63  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ  160 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~  160 (270)
                      |-.+-.++..+.+.|.|++||+++.+|..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455678888999999999998888765

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.00  E-value=0.64  Score=39.33  Aligned_cols=87  Identities=14%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHccCHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284         168 FFANRALCFLKMKNYVS---------AEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI  238 (270)
Q Consensus       168 ~~~~~a~~~~~~~~~~~---------A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  238 (270)
                      .+.-++.....+|=|+.         -.+...+.+++- .-..+...+|...+..|+|..|.+....++..+|+|.+|+.
T Consensus       390 ~~~vr~iy~~y~GW~dgnp~~L~p~~~~~~a~~~v~~~-GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~  468 (505)
T d2cfua2         390 SHNARAVLNRYLGYYDGNPATLDPLSPEDSAGRYVEYM-GGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARE  468 (505)
T ss_dssp             HHHHHHHHHHHHCSCCSCGGGTSCCCHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhcCcccCCccccCCCCHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            46666665555543321         122233334443 34678888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcch
Q psy6284         239 ELAELNRKLNIPLSPIK  255 (270)
Q Consensus       239 ~l~~~~~~~~~~~~a~~  255 (270)
                      .++.++..+|...++..
T Consensus       469 l~a~~~~~l~~~~~~~~  485 (505)
T d2cfua2         469 LQADALEQLGYQAENAG  485 (505)
T ss_dssp             HHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHHHHHhCcCHH
Confidence            99999999998777654

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.43  Score=29.11  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284         128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT  161 (270)
Q Consensus       128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~  161 (270)
                      .+..|..+..+|..+=+.|+|.+|+.+|..+++.
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456777888899999999999999999988874

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.49  E-value=0.9  Score=38.35  Aligned_cols=51  Identities=16%  Similarity=0.058  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q psy6284         132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY  182 (270)
Q Consensus       132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~  182 (270)
                      +....+++..++..|+|.-|....+.++..+|++..+...+|.+|.+++.-
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~  480 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  480 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            556677788888888888888888888888888888777777777666543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.96  E-value=0.92  Score=27.70  Aligned_cols=22  Identities=23%  Similarity=0.101  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHH
Q psy6284         169 FANRALCFLKMKNYVSAEADCT  190 (270)
Q Consensus       169 ~~~~a~~~~~~~~~~~A~~~~~  190 (270)
                      +..+|.-+++.|.|++||++.+
T Consensus        11 ~~RrAer~l~~~rydeAIech~   32 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHR   32 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence            3344455555555555555443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=81.12  E-value=3.1  Score=33.98  Aligned_cols=100  Identities=7%  Similarity=-0.094  Sum_probs=65.0

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6284         144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDI  223 (270)
Q Consensus       144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~  223 (270)
                      ..+....|............+........+. .+..+++..+...+...-......+...|-+|.++..+|+.++|...|
T Consensus       264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             STTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence            4455666666666655444333333333444 456788888888876543333355788899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284         224 LKVLALEPNNKQAEIELAELNRKLNIP  250 (270)
Q Consensus       224 ~~al~~~p~~~~a~~~l~~~~~~~~~~  250 (270)
                      ..+.. .++   -|-.|+  ..++|..
T Consensus       343 ~~~a~-~~~---fYG~LA--a~~Lg~~  363 (450)
T d1qsaa1         343 HQLMQ-QRG---FYPMVA--AQRIGEE  363 (450)
T ss_dssp             HHHHT-SCS---HHHHHH--HHHTTCC
T ss_pred             HHHhc-CCC---hHHHHH--HHHcCCC
Confidence            98875 332   444444  3456653