Psyllid ID: psy6291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccEEc
Coil and Loop (DISEMBL)
MLVMKKAVRWELPRSLIKFRLMArlhifpdqevpEDLLKNVSSQIrqlrpvprtlasysdkevdefpkindfpkdyilk
Flexible Loop (DISEMBL)
mlvmkkavrwelprSLIKFRLMARLHIFPDQEVPEDLLKNVssqirqlrpvprtlasysdkevdefpkindfpkdyilk
Low Complexity Region (SEG)
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
Disordered region (IsUnstruct)
*****KAVRWELPRSLIKFRLMARLHIFPDQEVP**LL*****************************************
Disordered Region (DISOPRED)
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYIL*
Disordered Region (DISEMBL)
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
Disordered Region (DISPRO)
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFPKDYILK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q9VJ38	178	39S ribosomal protein L13	yes	N/A	0.987	0.438	0.448	6e-13
Q3SYS1	178	39S ribosomal protein L13	yes	N/A	0.962	0.426	0.434	1e-12
Q9BYD1	178	39S ribosomal protein L13	yes	N/A	0.962	0.426	0.407	2e-11
Q9D1P0	178	39S ribosomal protein L13	yes	N/A	0.936	0.415	0.391	1e-10

>sp|Q9VJ38|RM13_DROME 39S ribosomal protein L13, mitochondrial OS=Drosophila melanogaster GN=mRpL13 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 53/78 (67%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           +VMKKAV   +  +L +   M RLH+F D +VPE++L+NV++QIR  R +P+ L     +
Sbjct: 101 MVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRLDHIDKE 160

Query: 62  EVDEFPKINDFPKDYILK 79
            ++ FP I D+PKDYIL+
Sbjct: 161 TLENFPNIMDYPKDYILR 178

Drosophila melanogaster (taxid: 7227)

>sp|Q3SYS1|RM13_BOVIN 39S ribosomal protein L13, mitochondrial OS=Bos taurus GN=MRPL13 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 55/76 (72%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  LM RLH+FPD+++PED+LKN++ ++ Q R VPR L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDYIL 78
           ++ FP++   P+DY L
Sbjct: 163 IEAFPRVWSPPEDYRL 178

Bos taurus (taxid: 9913)

>sp|Q9BYD1|RM13_HUMAN 39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 53/76 (69%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  +M RLH+FPD+ +PED+LKN+  ++ Q R +P+ L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDYIL 78
           +D FP++   P+DY L
Sbjct: 163 IDAFPRLWTPPEDYRL 178

Homo sapiens (taxid: 9606)

>sp|Q9D1P0|RM13_MOUSE 39S ribosomal protein L13, mitochondrial OS=Mus musculus GN=Mrpl13 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 52/74 (70%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VP+ L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDY 76
           ++ FP++   P D+
Sbjct: 163 IEAFPRVWTPPDDF 176

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
270009657	539	hypothetical protein TcasGA2_TC008947 [T	0.987	0.144	0.551	4e-17
91086957	178	PREDICTED: similar to 39S ribosomal prot	0.987	0.438	0.551	9e-17
346469835	181	hypothetical protein [Amblyomma maculatu	0.974	0.425	0.519	5e-16
332375993	178	unknown [Dendroctonus ponderosae]	0.987	0.438	0.512	3e-15
242015600	177	mitochondrial 50S ribosomal protein L13,	0.987	0.440	0.5	9e-15
332026320	178	39S ribosomal protein L13, mitochondrial	0.987	0.438	0.5	1e-14
307168987	178	39S ribosomal protein L13, mitochondrial	0.987	0.438	0.487	3e-14
241161087	181	ribosomal protein L13, putative [Ixodes	0.962	0.419	0.513	5e-14
322784728	128	hypothetical protein SINV_12607 [Solenop	0.987	0.609	0.487	6e-14
442759265	181	Putative ribosomal protein l13 [Ixodes r	0.962	0.419	0.513	7e-14

>gi|270009657|gb|EFA06105.1| hypothetical protein TcasGA2_TC008947 [Tribolium castaneum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 59/78 (75%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           L++KKAV   +  +L +   M RLH+F D+ VP DL+KNVS+QIRQLRP+P+ L  Y+++
Sbjct: 462 LILKKAVYKSMAGNLQRRHTMERLHLFADENVPADLMKNVSNQIRQLRPMPKRLDHYTEE 521

Query: 62  EVDEFPKINDFPKDYILK 79
           EV  FPK+ D+PKDYILK
Sbjct: 522 EVKSFPKLIDYPKDYILK 539

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086957|ref|XP_973003.1| PREDICTED: similar to 39S ribosomal protein L13 [Tribolium castaneum]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 59/78 (75%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           L++KKAV   +  +L +   M RLH+F D+ VP DL+KNVS+QIRQLRP+P+ L  Y+++
Sbjct: 101 LILKKAVYKSMAGNLQRRHTMERLHLFADENVPADLMKNVSNQIRQLRPMPKRLDHYTEE 160

Query: 62  EVDEFPKINDFPKDYILK 79
           EV  FPK+ D+PKDYILK
Sbjct: 161 EVKSFPKLIDYPKDYILK 178

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469835|gb|AEO34762.1| hypothetical protein [Amblyomma maculatum]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 58/77 (75%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           V+ KAV   LP  L +   MARLH+FPD +VP D+++N+S Q+RQLRPVP+ L  YS++E
Sbjct: 105 VLWKAVYRALPGDLRRRPRMARLHLFPDDQVPYDIMQNISGQLRQLRPVPKKLTEYSEEE 164

Query: 63  VDEFPKINDFPKDYILK 79
           + EFPK+ D+P DY+++
Sbjct: 165 LSEFPKVFDYPDDYVIR 181

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375993|gb|AEE63137.1| unknown [Dendroctonus ponderosae]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           ++M+KAV   +  +L +   M RLHIFPD  VP +LL NVS+QIRQ+RPVP+ L  YS++
Sbjct: 101 MIMRKAVYNGMDGNLQRRYTMQRLHIFPDANVPNELLGNVSNQIRQIRPVPKRLDHYSEE 160

Query: 62  EVDEFPKINDFPKDYILK 79
           EV   PK+ D+PKDY+++
Sbjct: 161 EVQTAPKVIDYPKDYVVR 178

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015600|ref|XP_002428441.1| mitochondrial 50S ribosomal protein L13, putative [Pediculus humanus corporis] gi|212513053|gb|EEB15703.1| mitochondrial 50S ribosomal protein L13, putative [Pediculus humanus corporis]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 60/78 (76%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           ++MKKAV   L ++L +   M RLH++ +++VP+++L+NVSSQI QLR VPR L SYS+K
Sbjct: 100 MIMKKAVYSSLDKNLQRRHTMERLHLYDEEKVPKEILENVSSQIEQLRIVPRKLKSYSEK 159

Query: 62  EVDEFPKINDFPKDYILK 79
           E++EFPK+ ++  DY+ K
Sbjct: 160 EIEEFPKLANYSTDYVRK 177

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026320|gb|EGI66454.1| 39S ribosomal protein L13, mitochondrial [Acromyrmex echinatior]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 59/78 (75%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           L+++KAV   LP++L++   M RLHIFPD+++PED+LKN+S+QI+QLR VP  L      
Sbjct: 101 LIVEKAVYRALPKNLLRRHTMQRLHIFPDEKIPEDMLKNISNQIKQLRTVPVQLNRIPQT 160

Query: 62  EVDEFPKINDFPKDYILK 79
           EV+ FP++  +P++YILK
Sbjct: 161 EVNNFPQLLRYPENYILK 178

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168987|gb|EFN61866.1| 39S ribosomal protein L13, mitochondrial [Camponotus floridanus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 59/78 (75%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           L+++KAV   LP++L +   M RLHIFP+ ++P+D+L+N+S+QI+QLRPVP  L     +
Sbjct: 101 LIVEKAVYSALPKNLQRRHTMQRLHIFPNNKIPKDILENISNQIKQLRPVPVRLDHIPKE 160

Query: 62  EVDEFPKINDFPKDYILK 79
           EVD FP++  +PKDY+L+
Sbjct: 161 EVDNFPQLLKYPKDYVLR 178

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241161087|ref|XP_002408852.1| ribosomal protein L13, putative [Ixodes scapularis] gi|215494416|gb|EEC04057.1| ribosomal protein L13, putative [Ixodes scapularis]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           V+ KAV    P  L +   MARLH+FPD  +P+++ +N+S Q+RQLRPVPR LA  SD+E
Sbjct: 105 VLWKAVYRACPGDLRRKTKMARLHLFPDDRLPDEVARNISGQLRQLRPVPRKLAELSDQE 164

Query: 63  VDEFPKINDFPKDYIL 78
              FPK+ D+P+DYI+
Sbjct: 165 RHSFPKLFDYPEDYIV 180

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784728|gb|EFZ11555.1| hypothetical protein SINV_12607 [Solenopsis invicta]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 59/78 (75%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           L+++KAV   LP++L +   M RLHIFPD+++PED+LKN++++I+QLR +P  L     K
Sbjct: 51  LIVEKAVYRALPKNLQRRYTMQRLHIFPDEKIPEDILKNITNEIKQLRTIPVRLDHIPQK 110

Query: 62  EVDEFPKINDFPKDYILK 79
           EVD FP++  +PK+YIL+
Sbjct: 111 EVDNFPQLLKYPKNYILE 128

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442759265|gb|JAA71791.1| Putative ribosomal protein l13 [Ixodes ricinus]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           V+ KAV    P  L +   MARLH+FPD  +P+ + +N+S Q+RQLRPVPR LA  SD+E
Sbjct: 105 VLWKAVYRACPGDLRRKTKMARLHLFPDDRLPDQVARNISGQLRQLRPVPRKLAELSDQE 164

Query: 63  VDEFPKINDFPKDYIL 78
              FPK+ D+P+DYI+
Sbjct: 165 RHSFPKLFDYPEDYIV 180

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
UNIPROTKB|Q3SYS1	178	MRPL13 "39S ribosomal protein	0.962	0.426	0.434	1.4e-14
ZFIN|ZDB-GENE-050522-167	179	mrpl13 "mitochondrial ribosoma	0.974	0.430	0.441	3e-14
FB|FBgn0032720	178	mRpL13 "mitochondrial ribosoma	0.974	0.432	0.481	3.8e-14
UNIPROTKB|F1S286	178	MRPL13 "Uncharacterized protei	0.962	0.426	0.421	4.9e-14
UNIPROTKB|K7GP19	154	MRPL13 "Uncharacterized protei	0.962	0.493	0.421	4.9e-14
UNIPROTKB|Q9BYD1	178	MRPL13 "39S ribosomal protein	0.962	0.426	0.407	2.1e-13
UNIPROTKB|J9P023	178	MRPL13 "Uncharacterized protei	0.962	0.426	0.421	4.4e-13
MGI|MGI:2137218	178	Mrpl13 "mitochondrial ribosoma	0.936	0.415	0.391	9.1e-13
UNIPROTKB|E1BWS7	69	MRPL13 "Uncharacterized protei	0.860	0.985	0.455	2.4e-12
RGD|1359587	178	Mrpl13 "mitochondrial ribosoma	0.936	0.415	0.391	2.4e-12

UNIPROTKB|Q3SYS1 MRPL13 "39S ribosomal protein L13, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 33/76 (43%), Positives = 55/76 (72%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  LM RLH+FPD+++PED+LKN++ ++ Q R VPR L  Y+ +E
Sbjct:   103 IVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDYIL 78
             ++ FP++   P+DY L
Sbjct:   163 IEAFPRVWSPPEDYRL 178

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-050522-167 mrpl13 "mitochondrial ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/77 (44%), Positives = 54/77 (70%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K AV   LPR+L +  +M RLH+FPD  +PED+LKN++ ++ Q R +PR L+ Y+ +E
Sbjct:   103 IIKLAVYGMLPRNLTRRTMMQRLHLFPDDVLPEDILKNLTEELPQPREIPRKLSEYTQEE 162

Query:    63 VDEFPKINDFPKDYILK 79
              D FP++   P+DY +K
Sbjct:   163 RDAFPRLWTPPEDYRMK 179

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

FB|FBgn0032720 mRpL13 "mitochondrial ribosomal protein L13" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/79 (48%), Positives = 56/79 (70%)

Query:     2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
             +VMKKAV   +  +L +   M RLH+F D +VPE++L+NV++QIR  R +P+ L  + DK
Sbjct:   101 MVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRL-DHIDK 159

Query:    62 E-VDEFPKINDFPKDYILK 79
             E ++ FP I D+PKDYIL+
Sbjct:   160 ETLENFPNIMDYPKDYILR 178

GO:0006412 "translation" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS

UNIPROTKB|F1S286 MRPL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/76 (42%), Positives = 54/76 (71%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VPR L  Y+ +E
Sbjct:   103 IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRKVPRRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDYIL 78
             ++ FP++   P+DY L
Sbjct:   163 IEAFPRVWSPPEDYRL 178

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|K7GP19 MRPL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/76 (42%), Positives = 54/76 (71%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VPR L  Y+ +E
Sbjct:    79 IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRKVPRRLDEYTQEE 138

Query:    63 VDEFPKINDFPKDYIL 78
             ++ FP++   P+DY L
Sbjct:   139 IEAFPRVWSPPEDYRL 154

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9BYD1 MRPL13 "39S ribosomal protein L13, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 31/76 (40%), Positives = 53/76 (69%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  +M RLH+FPD+ +PED+LKN+  ++ Q R +P+ L  Y+ +E
Sbjct:   103 IVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDYIL 78
             +D FP++   P+DY L
Sbjct:   163 IDAFPRLWTPPEDYRL 178

GO:0006412 "translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

UNIPROTKB|J9P023 MRPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 32/76 (42%), Positives = 52/76 (68%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  LM RLH+FPD+++PED+ KN+  ++ Q R VPR L  Y+ +E
Sbjct:   103 IVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDIRKNLVEELPQPRKVPRRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDYIL 78
             ++ FP +   P+DY L
Sbjct:   163 IEAFPIVWSPPEDYRL 178

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:2137218 Mrpl13 "mitochondrial ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 29/74 (39%), Positives = 52/74 (70%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A+   LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VP+ L  Y+ +E
Sbjct:   103 IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDY 76
             ++ FP++   P D+
Sbjct:   163 IEAFPRVWTPPDDF 176

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E1BWS7 MRPL13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query:    12 LPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKIND 71
             LP++L++  LM RLH+FPD  +PED+ KN+  +I Q R VPR L  Y+ +E+  FP++  
Sbjct:     2 LPKNLLRRTLMQRLHLFPDDVIPEDIEKNLLQEIPQPRVVPRRLDEYTPEEIAAFPRVWT 61

Query:    72 FPKDYILK 79
              PKD+ +K
Sbjct:    62 PPKDFRMK 69

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

RGD|1359587 Mrpl13 "mitochondrial ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 29/74 (39%), Positives = 51/74 (68%)

Query:     3 VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
             ++K A    LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VP+ L  Y+ +E
Sbjct:   103 IVKLATYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEE 162

Query:    63 VDEFPKINDFPKDY 76
             ++ FP++   P D+
Sbjct:   163 IEAFPRVWAPPDDF 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IEA;ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG3203|consensus	165		99.85
CHL00159	143	rpl13 ribosomal protein L13; Validated	99.45
PRK09216	144	rplM 50S ribosomal protein L13; Reviewed	99.4
TIGR01066	140	rplM_bact ribosomal protein L13, bacterial type. T	99.39
PF00572	128	Ribosomal_L13: Ribosomal protein L13; InterPro: IP	99.35
PRK06394	146	rpl13p 50S ribosomal protein L13P; Reviewed	99.35
COG0102	148	RplM Ribosomal protein L13 [Translation, ribosomal	99.33
TIGR01077	142	L13_A_E ribosomal protein L13, archaeal/eukaryotic	99.31
PLN00205	191	ribisomal protein L13 family protein; Provisional	99.28
cd00392	114	Ribosomal_L13 Ribosomal protein L13. Protein L13,	99.16
PTZ00068	202	60S ribosomal protein L13a; Provisional	99.12
KOG3204|consensus	197		88.99

>KOG3203|consensus

Probab=99.85  E-value=4.4e-22  Score=142.40  Aligned_cols=59  Identities=37%  Similarity=0.608  Sum_probs=56.0

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHHHhhHHHhhhccCCcchhhccCCHHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE   62 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~~~Ni~~~~~q~~~vpk~l~~y~~eE   62 (79)
                      +|+++||+||||+|+|||++|+|||||+|++||  +..||+.++.|++.||+++++|+.||
T Consensus       107 ~Iv~~AV~gMLPkN~Lrr~~~~rL~lf~g~e~p--~~~Ni~~~~~q~~~vp~r~~e~~~~~  165 (165)
T KOG3203|consen  107 RIVRLAVYGMLPKNLLRRRRMQRLHLFPGEEHP--EKVNIGSELHQPQGVPKRLDEYTFEE  165 (165)
T ss_pred             HHHHHHHHhhCccchHHHHHhheeeccCCccCc--hhhhhHHHhccccCCCchhHHHhhcC
Confidence            689999999999999999999999999999999  45599999999999999999999875

>CHL00159 rpl13 ribosomal protein L13; Validated

Probab=99.45  E-value=4.7e-14  Score=99.05  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=34.1

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      +||++||+||||||.+||.+|+||+||+|++|||+-
T Consensus       100 ~il~~aV~gMLPkn~lgr~~~~rLkvy~G~~hph~a  135 (143)
T CHL00159        100 RIIEKAVKGMLPKGPLGRKLFTKLKVYKGESHPHVA  135 (143)
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCccc
Confidence            689999999999999999999999999999999853

>PRK09216 rplM 50S ribosomal protein L13; Reviewed

Probab=99.40  E-value=1.3e-13  Score=96.80  Aligned_cols=36  Identities=25%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      +||++||+||||+|.+|+.+|+||+||+|++|||+-
T Consensus        99 ~il~~aVrgMLPkn~lgr~~~~rLkvy~G~~hp~~~  134 (144)
T PRK09216         99 RVIEKAVKGMLPKNPLGRAMFKKLKVYAGAEHPHAA  134 (144)
T ss_pred             HHHHHHHHhcCCCCccHHHHHhCcEEeCCCCCCccc
Confidence            689999999999999999999999999999999853

>TIGR01066 rplM_bact ribosomal protein L13, bacterial type

Probab=99.39  E-value=1.9e-13  Score=95.45  Aligned_cols=36  Identities=25%  Similarity=0.509  Sum_probs=34.2

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      +||++||+||||||.+|+.+|+||+||+|++|||+-
T Consensus        97 ~ii~~aVrGMLPkn~lgr~~l~rLkvy~G~~hp~~~  132 (140)
T TIGR01066        97 RVLEHAVKGMLPKNRLGRKLFKKLKVYAGSEHPHEA  132 (140)
T ss_pred             HHHHHHHHhcCCCCccHHHHHhCeEEeCCCCCChhh
Confidence            689999999999999999999999999999999754

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.

>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.35  E-value=4.3e-13  Score=92.12  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=33.4

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+|.+|+.+|+||+||+|++|||+
T Consensus        85 ~i~~~aVrgMLP~n~~g~~~l~rL~vy~g~~hp~~  119 (128)
T PF00572_consen   85 RILKRAVRGMLPKNKLGREALKRLKVYPGEPHPHA  119 (128)
T ss_dssp             HHHHHHHHTTSTTSHHHHHHHTTEEEESSSSCSTT
T ss_pred             HHHHHHHHHHCCCChhhhHHhhceEEECCCCCChh
Confidence            58999999999999999999999999999999964

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....

>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed

Probab=99.35  E-value=5.1e-13  Score=93.85  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      +||++||+|||| ||.+|+.+|+|||||+|++|||+-
T Consensus        77 ~il~~AV~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~  113 (146)
T PRK06394         77 RIFKRTIRGMLPYKKPRGREALKRLKVYVGVPKELEG  113 (146)
T ss_pred             HHHHHHHHhcCCCCChhHHHHHhCcEEecCCCCCccc
Confidence            689999999999 999999999999999999999753

>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.8e-13  Score=94.38  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=33.4

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+|.|||++|+||+||.|++|||+
T Consensus       100 ri~~~AVrGMLPk~~lGr~~~krLkVy~G~~h~~~  134 (148)
T COG0102         100 RILERAVRGMLPKNPLGRAALKRLKVYAGIPHPHE  134 (148)
T ss_pred             HHHHHHHhccCCCChhHHHHHhCceEecCCCCccc
Confidence            68999999999999999999999999999999954

>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic

Probab=99.31  E-value=1e-12  Score=91.95  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             hHHHHHHHhcCCCC-hhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRS-LIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn-~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+| .+|+.+|+|||||+|++|||+
T Consensus        72 ~il~~aVrGMLPk~~~~Gr~~~krLkvy~G~~h~~~  107 (142)
T TIGR01077        72 RIFRRTVRGMLPHKTARGRAALRRLKVYVGIPPELD  107 (142)
T ss_pred             HHHHHHHHHhCCCCChhHHHHHhCcEEecCCCCCcc
Confidence            68999999999997 799999999999999999975

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.

>PLN00205 ribisomal protein L13 family protein; Provisional

Probab=99.28  E-value=2e-12  Score=94.64  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+|++|+++|+|||||+|++|||+
T Consensus       101 ~Il~kAVrGMLPkn~lr~~~~krLkVY~G~~hp~~  135 (191)
T PLN00205        101 EVIRKAVLRMLPRNRLRDDRDRKLRIFAGSEHPFG  135 (191)
T ss_pred             HHHHHHHHhcCCCCchHHHHHhCCEEECCCCCChh
Confidence            68999999999999999999999999999999973

>cd00392 Ribosomal_L13 Ribosomal protein L13

Probab=99.16  E-value=1.9e-11  Score=82.61  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=28.8

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCC
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQ   31 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~   31 (79)
                      +||++||+||||||.+|+++|+|||||+|+
T Consensus        85 ~il~~aV~gMLPkn~~g~~~l~rLkvy~g~  114 (114)
T cd00392          85 RILKRAVRGMLPKNKLGRAALKRLKVYEGA  114 (114)
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCcEEeCCC
Confidence            689999999999999999999999999985

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.

>PTZ00068 60S ribosomal protein L13a; Provisional

Probab=99.12  E-value=3.5e-11  Score=88.63  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHHHH
Q psy6291           2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPEDLL   38 (79)
Q Consensus         2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~~~   38 (79)
                      +||++||+||||+ |.+|+.+|+||+||+|.+|||+-.
T Consensus        77 ~Il~raVrGMLPkk~~~Gr~alkrLkVy~G~php~~~~  114 (202)
T PTZ00068         77 DIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKV  114 (202)
T ss_pred             HHHHHHHhhhCCCCChhHHHHHhCCEEecCCCCchhcc
Confidence            6899999999997 889999999999999999997533

>KOG3204|consensus

Probab=88.99  E-value=0.32  Score=36.28  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             hHHHHHHHhcCCCC-hhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELPRS-LIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLPkn-~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      .|++++|.||+|+. +-++..+++|.+|.|=-+|.+-
T Consensus        72 ~i~~~~vrgm~~~kt~rg~aal~~l~~~eGip~~~dk  108 (197)
T KOG3204|consen   72 RILQKAVRGMYPHKTKRGRAALERLRVFEGIPPPYDK  108 (197)
T ss_pred             HHHHHhhccccccCCCccHHHHHHHHHhCCCCChhhh
Confidence            58999999999987 5889999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2ftc_H	148	Structural Model For The Large Subunit Of The Mamma		2e-05

>pdb|2FTC|H Chain H, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 148

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQ 47
           ++K A+   LP++L +  +M RLH+FPD+ +PED+LKN+  ++ Q
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	3e-06

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148

 Score = 41.0 bits (97), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 33/45 (73%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQ 47
           ++K A+   LP++L +  +M RLH+FPD+ +PED+LKN+  ++ Q
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	99.63
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	99.47
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	99.46
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	99.41
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	99.41
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	99.4
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	99.39
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	99.31
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	99.31
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	99.29
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	99.28
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	99.28
4b6a_O	199	60S ribosomal protein L16-A; large ribosomal subun	99.28

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.63  E-value=8.2e-17  Score=112.38  Aligned_cols=47  Identities=40%  Similarity=0.704  Sum_probs=44.4

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHHHhhHHHhhhcc
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQL   48 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~~~Ni~~~~~q~   48 (79)
                      +||++||+||||||.+||.+|+|||||+|++|||+.++|+.-.+.|+
T Consensus       102 ~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~~~  148 (148)
T 2ftc_H          102 AIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQP  148 (148)
T ss_pred             HHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccCCC
Confidence            68999999999999999999999999999999999999998877764

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...

Probab=99.47  E-value=1.5e-14  Score=100.36  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||.+||.+|+|||||+|++|||+
T Consensus        99 ~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~  133 (142)
T 3r8s_J           99 RVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHA  133 (142)
T ss_dssp             HHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCG
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcc
Confidence            68999999999999999999999999999999985

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...

Probab=99.46  E-value=1.9e-14  Score=99.73  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=33.7

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+|.+||.+|+|||||+|++|||+
T Consensus        97 ~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~  131 (140)
T 3v2d_N           97 RVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ  131 (140)
T ss_dssp             HHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCG
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcc
Confidence            68999999999999999999999999999999985

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1

Probab=99.41  E-value=7.4e-14  Score=96.55  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=33.6

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+|||| ||.+||.+|+|||||+|++|||+
T Consensus        73 ~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~  108 (142)
T 1j3a_A           73 EIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQ  108 (142)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGT
T ss_pred             HHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCcc
Confidence            689999999999 99999999999999999999974

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N

Probab=99.41  E-value=6e-14  Score=99.49  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=33.6

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||.+||.+|+|||||+|++|||+
T Consensus       120 ~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~  154 (163)
T 3f1f_N          120 RVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ  154 (163)
T ss_dssp             HHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCC
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcc
Confidence            68999999999999999999999999999999974

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K

Probab=99.40  E-value=9.9e-14  Score=99.15  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||.|||.+|+|||||+|++|||+
T Consensus       125 ~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~  159 (174)
T 2zjr_G          125 RVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHS  159 (174)
T ss_dssp             HHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGG
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChh
Confidence            68999999999999999999999999999999974

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.39  E-value=6.9e-14  Score=104.67  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=37.6

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHHHhhHHHhhh
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIR   46 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~~~Ni~~~~~   46 (79)
                      +||++||+||||||+|||.+|+|||||+|++|||+-++++.-.+.
T Consensus       198 rIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia  242 (250)
T 3bbo_L          198 RIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLR  242 (250)
T ss_dssp             HHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC------
T ss_pred             HHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcCCeeechh
Confidence            699999999999999999999999999999999988877654343

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.31  E-value=3.6e-13  Score=96.20  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+|||| ||.+||.+|+|||||+|++|||+
T Consensus        72 ~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~  107 (178)
T 3jyw_M           72 RIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYD  107 (178)
T ss_dssp             THHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSC
T ss_pred             HHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchh
Confidence            699999999999 69999999999999999999985

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I

Probab=99.31  E-value=8e-13  Score=95.83  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+ |.+||.+|+|||||+|++|||+
T Consensus        77 rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~  112 (198)
T 4a17_I           77 RIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYD  112 (198)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGT
T ss_pred             HHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChh
Confidence            6899999999995 9999999999999999999985

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...

Probab=99.28  E-value=1.8e-12  Score=90.06  Aligned_cols=33  Identities=12%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCCh
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVP   34 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hp   34 (79)
                      +||++||+|||| ||++||.+|+|||||+|++||
T Consensus        77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p  110 (145)
T 1vq8_J           77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD  110 (145)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC
Confidence            689999999999 999999999999999999999

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.28  E-value=1.2e-12  Score=95.19  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||+ |.+|+.+|+||+||+|++|||+
T Consensus        78 ~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~  113 (203)
T 2zkr_j           78 RIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYD  113 (203)
T ss_dssp             HHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSS
T ss_pred             HHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchh
Confidence            6899999999999 7999999999999999999975

>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M

Probab=99.28  E-value=1.8e-12  Score=94.06  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+|||| ||.+|+.+|+||+||+|.+|||+
T Consensus        78 ~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~  113 (199)
T 4b6a_O           78 RILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYD  113 (199)
T ss_dssp             HHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGG
T ss_pred             HHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcc
Confidence            689999999999 89999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d2zjrg1	142	c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco	3e-04
d2j01n1	139	c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus	5e-04
d2gych1	140	c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric	0.002

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 34.6 bits (79), Expect = 3e-04
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV   LP+      +  RL ++  +  P  
Sbjct: 97  VIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHS 130

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

 Score = 33.9 bits (77), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV+  LP+  +  RL  RL ++   + P  
Sbjct: 98  VLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ 131

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV+  LP+  +   +  +L ++   E    
Sbjct: 100 VIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHA 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d2zjrg1	142	Ribosomal protein L13 {Deinococcus radiodurans [Ta	99.51
d2j01n1	139	Ribosomal protein L13 {Thermus thermophilus [TaxId	99.49
d2gych1	140	Ribosomal protein L13 {Escherichia coli [TaxId: 56	99.37
d1j3aa_	142	Ribosomal protein L13 {Archaeon Pyrococcus horikos	99.34
d1vqoj1	142	Ribosomal protein L13 {Archaeon Haloarcula marismo	99.23

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.51  E-value=3.3e-15  Score=101.69  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||.+||.+|+|||||+|++|||+
T Consensus        96 ~ii~~aV~gMLPkn~lgr~~lkrLkvy~G~~hp~~  130 (142)
T d2zjrg1          96 RVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHS  130 (142)
T ss_dssp             HHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGG
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCeEeCCCCCCcc
Confidence            68999999999999999999999999999999986

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=3.6e-15  Score=101.10  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=33.8

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||++|+.+|+|||||+|++|||+
T Consensus        97 ~il~~aV~gMLPkn~lg~~~l~rLkvy~g~~hp~~  131 (139)
T d2j01n1          97 RVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ  131 (139)
T ss_dssp             HHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTC
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcc
Confidence            68999999999999999999999999999999985

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=4.2e-15  Score=101.05  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+||||||+||+.+|+|||||+|++|||+
T Consensus        99 ~il~~aV~gMLPkn~lgr~~lkrLkvy~g~~hph~  133 (140)
T d2gych1          99 RVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHA  133 (140)
T ss_dssp             SSTTTSSSSCSCSSSTTSSTTTSSCCCCCCTTTTT
T ss_pred             HHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcc
Confidence            57999999999999999999999999999999984

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=1.9e-13  Score=92.72  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=33.7

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPEDL   37 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~~   37 (79)
                      +||++||+|||| ||.+||.+|+||+||+|++|||+-
T Consensus        73 ~il~~aVrGMLP~k~~lgr~~~krLkvy~G~~h~~~~  109 (142)
T d1j3aa_          73 EIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD  109 (142)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTT
T ss_pred             HHHHHHHHcccCCCChHHHHHHhCCEEecCCCCChhh
Confidence            589999999999 899999999999999999999753

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.23  E-value=1.5e-12  Score=88.64  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291           2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED   36 (79)
Q Consensus         2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~   36 (79)
                      +||++||+|||| ||.+||.+|+||+||.|++|||+
T Consensus        74 ~il~raVrGMLP~k~~~gr~~~krLkvy~G~~h~~~  109 (142)
T d1vqoj1          74 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDED  109 (142)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCSSSC
T ss_pred             HHHHHHHhCcCCCCChhHHHHHhCcEEeCCCCCccc
Confidence            589999999999 78899999999999999999985