Psyllid ID: psy6309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MSYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccccccccccccHHHHHHHcHHcccEEEcccccccccEEEEccHHHHHHHHHHcccEEEEcccHHHHHHHcHHHHHHHHHccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccEEEEEEccccccccccccHHHHHHHHHHHHHHEEEccccccccEEEEEccccEEEEEEEccccEEEEcccHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
msyksgilhytpsrrvdgklqcayddryipfrspqVFIQLTYFVSGIlhytpsrrvdgklqcayddrYIVQVATEydgvivsndrYRDIMQENDKWKATIERRLLMFNFVKEllifpqdplgrdgpsldeflrf
Flexible Loop (DISEMBL)
msyksgilhytpsrrvdgkLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQvateydgvivsndryrdiMQENDKWKATIERRLLMFNFVKELLifpqdplgrdgpsLDEFLRF
Low Complexity Region (SEG)
MSYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Disordered region (IsUnstruct)
******ILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQ****************
Disordered Region (DISOPRED)
***KSGILHYTPSRRVD***********IPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Disordered Region (DISEMBL)
MSYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Disordered Region (DISPRO)
**YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
A2A288	527	Probable ribonuclease ZC3	yes	N/A	0.753	0.191	0.572	5e-26
Q8BIY3	533	Probable ribonuclease ZC3	yes	N/A	0.753	0.189	0.553	9e-26
Q80U38	671	Protein KHNYN OS=Mus musc	no	N/A	0.619	0.123	0.590	3e-25
O15037	678	Protein KHNYN OS=Homo sap	no	N/A	0.619	0.122	0.578	4e-25
Q5D1E8	599	Ribonuclease ZC3H12A OS=H	no	N/A	0.649	0.145	0.597	8e-25
Q5D1E7	596	Ribonuclease ZC3H12A OS=M	no	N/A	0.649	0.145	0.609	9e-25
A0JPN4	596	Ribonuclease ZC3H12A OS=R	no	N/A	0.649	0.145	0.609	4e-24
A6QQJ8	583	Ribonuclease ZC3H12A OS=B	no	N/A	0.649	0.149	0.597	7e-24
Q5DTV4	884	Probable ribonuclease ZC3	no	N/A	0.649	0.098	0.586	8e-24
Q9C0D7	883	Probable ribonuclease ZC3	no	N/A	0.649	0.098	0.586	9e-24

>sp|A2A288|ZC12D_HUMAN Probable ribonuclease ZC3H12D OS=Homo sapiens GN=ZC3H12D PE=2 SV=3

 Score =  116 bits (290), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

May regulate cell growth likely by suppressing RB1 phosphorylation. May function as RNase and regulate the levels of target RNA species (Potential). Serve as a tumor suppressor in certain leukemia cells. Overexpression inhibits the G1 to S phase progression through suppression of RB1 phosphorylation.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q8BIY3|ZC12D_MOUSE Probable ribonuclease ZC3H12D OS=Mus musculus GN=Zc3h12d PE=2 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V+GK    YDDRYIV+VA E DG+IVSND YRD+
Sbjct: 149 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEKDGIIVSNDNYRDL 206

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct: 207 QNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 249

May regulate cell growth likely by suppressing Rb1 phosphorylation. May function as RNase and regulate the levels of target RNA species (Potential). Putative tumor suppressor.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q80U38|KHNYN_MOUSE Protein KHNYN OS=Mus musculus GN=Khnyn PE=2 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 65/83 (78%)

Query: 51  TPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFV 110
           TPSR +DGK   +YDDR++V++A E DG+IVSND++RD+ +E+DKW A I  RLL F FV
Sbjct: 503 TPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRERLLPFTFV 562

Query: 111 KELLIFPQDPLGRDGPSLDEFLR 133
             L + P DPLGR+GP+LDEFL+
Sbjct: 563 GNLFMVPDDPLGRNGPTLDEFLK 585

Mus musculus (taxid: 10090)

>sp|O15037|KHNYN_HUMAN Protein KHNYN OS=Homo sapiens GN=KHNYN PE=2 SV=3

 Score =  112 bits (281), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 51  TPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFV 110
           TPSR +DGK   +YDDR++V++A E DG+IVSND++RD+ +E++KW A I  RLL F FV
Sbjct: 510 TPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESEKWMAIIRERLLPFTFV 569

Query: 111 KELLIFPQDPLGRDGPSLDEFLR 133
             L + P DPLGR+GP+LDEFL+
Sbjct: 570 GNLFMVPDDPLGRNGPTLDEFLK 592

Homo sapiens (taxid: 9606)

>sp|Q5D1E8|ZC12A_HUMAN Ribonuclease ZC3H12A OS=Homo sapiens GN=ZC3H12A PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLLM
Sbjct: 207 ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 266

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 267 YSFVNDKFMPPDDPLGRHGPSLDNFLR 293

Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response and inflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of the mRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA (By similarity). Triggers apoptosis and promotes angiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5D1E7|ZC12A_MOUSE Ribonuclease ZC3H12A OS=Mus musculus GN=Zc3h12a PE=1 SV=2

 Score =  112 bits (279), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DGV+VSND YRD+  E  +WK  IE RLLM
Sbjct: 207 ILVFTPSRRVGGKRVVCYDDRFIVKLAFESDGVVVSNDTYRDLQGERQEWKRFIEERLLM 266

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 267 YSFVNDKFMPPDDPLGRHGPSLDNFLR 293

Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response and inflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of the mRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA. Triggers apoptosis and promotes angiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|A0JPN4|ZC12A_RAT Ribonuclease ZC3H12A OS=Rattus norvegicus GN=Zc3h12a PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DGV+VSND YRD+  E  +WK  IE RLLM
Sbjct: 207 ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGVVVSNDTYRDLQGERQEWKRFIEERLLM 266

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 267 YSFVNDKFMPPDDPLGRHGPSLDNFLR 293

Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response and inflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of the mRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA. Triggers apoptosis and promotes angiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|A6QQJ8|ZC12A_BOVIN Ribonuclease ZC3H12A OS=Bos taurus GN=ZC3H12A PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLLM
Sbjct: 191 ILVFTPSRRVGGKRVVCYDDRFIVKLAFESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 250

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 251 YSFVNDKFMPPDDPLGRHGPSLDNFLR 277

Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response and inflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of the mRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA. Triggers apoptosis and promotes angiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5DTV4|ZC12C_MOUSE Probable ribonuclease ZC3H12C OS=Mus musculus GN=Zc3h12c PE=2 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV G+    YDDR+IV++A E DG+IVSND YRD+  E  +WK  I+ RLLM
Sbjct: 318 ILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLM 377

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 378 YSFVNDKFMPPDDPLGRHGPSLDNFLR 404

May function as RNase and regulate the levels of target RNA species.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9C0D7|ZC12C_HUMAN Probable ribonuclease ZC3H12C OS=Homo sapiens GN=ZC3H12C PE=1 SV=2

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 64/87 (73%)

Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV G+    YDDR+IV++A E DG+IVSND YRD+  E  +WK  I+ RLLM
Sbjct: 317 ILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLM 376

Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 377 YSFVNDKFMPPDDPLGRHGPSLDNFLR 403

May function as RNase and regulate the levels of target RNA species.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
357608797	406	hypothetical protein KGM_22206 [Danaus p	0.626	0.206	0.630	2e-26
410960236	459	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.220	0.563	9e-25
119568186	673	hCG1749747, isoform CRA_a [Homo sapiens]	0.753	0.150	0.572	1e-24
426235208	541	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.186	0.563	2e-24
402867999	526	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.192	0.572	2e-24
344263872	558	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.181	0.563	3e-24
403306201	590	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.171	0.563	3e-24
114609790	527	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.191	0.572	3e-24
426354860	527	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.191	0.572	3e-24
297679390	527	PREDICTED: probable ribonuclease ZC3H12D	0.753	0.191	0.572	3e-24

>gi|357608797|gb|EHJ66150.1| hypothetical protein KGM_22206 [Danaus plexippus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 67/84 (79%)

Query: 50  YTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNF 109
           YTPSR V GKL  +YDDRYIVQ A E+DGVIVS D YRD++QEN +W+  IE RLL F +
Sbjct: 320 YTPSREVQGKLITSYDDRYIVQCAAEFDGVIVSGDNYRDLLQENPRWRFVIENRLLPFTW 379

Query: 110 VKELLIFPQDPLGRDGPSLDEFLR 133
           V ++++FP+DPLGR GP L++FLR
Sbjct: 380 VGDMIMFPKDPLGRHGPPLEQFLR 403

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410960236|ref|XP_003986700.1| PREDICTED: probable ribonuclease ZC3H12D [Felis catus]

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V+GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 246

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119568186|gb|EAW47801.1| hCG1749747, isoform CRA_a [Homo sapiens]

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 339 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 396

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 397 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 439

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426235208|ref|XP_004011581.1| PREDICTED: probable ribonuclease ZC3H12D [Ovis aries]

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 241 PIREQHVLEELER--QAVLVYTPSRKVSGKRVVCYDDRYIVKVAYELDGVIVSNDNYRDL 298

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct: 299 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 341

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402867999|ref|XP_003898113.1| PREDICTED: probable ribonuclease ZC3H12D [Papio anubis]

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344263872|ref|XP_003404019.1| PREDICTED: probable ribonuclease ZC3H12D [Loxodonta africana]

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSRRV GK    YDDRYIV++A E DGVIVSND YRD+
Sbjct: 150 PIRERHVLEELER--EAVLVYTPSRRVSGKRVVCYDDRYIVKLAYEQDGVIVSNDNYRDL 207

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct: 208 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 250

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403306201|ref|XP_003943629.1| PREDICTED: probable ribonuclease ZC3H12D [Saimiri boliviensis boliviensis]

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 185 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 242

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct: 243 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPTLSNFL 285

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114609790|ref|XP_518794.2| PREDICTED: probable ribonuclease ZC3H12D [Pan troglodytes]

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426354860|ref|XP_004044860.1| PREDICTED: probable ribonuclease ZC3H12D [Gorilla gorilla gorilla]

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297679390|ref|XP_002817525.1| PREDICTED: probable ribonuclease ZC3H12D [Pongo abelii]

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 30  PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
           P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct: 146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query: 90  MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
             EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct: 204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
UNIPROTKB|J3QT81	321	ZC3H12D "Probable ribonuclease	0.753	0.314	0.572	2.2e-25
UNIPROTKB|A2A288	527	ZC3H12D "Probable ribonuclease	0.753	0.191	0.572	9.1e-25
UNIPROTKB|E2R4C6	485	ZC3H12D "Uncharacterized prote	0.753	0.208	0.563	1.8e-24
MGI|MGI:3045313	533	Zc3h12d "zinc finger CCCH type	0.753	0.189	0.553	4.3e-24
UNIPROTKB|F1S7S2	507	ZC3H12D "Uncharacterized prote	0.753	0.199	0.553	4.7e-24
UNIPROTKB|E1C3S0	292	ZC3H12D "Uncharacterized prote	0.641	0.294	0.627	5.3e-24
MGI|MGI:2451333	671	Khnyn "KH and NYN domain conta	0.716	0.143	0.556	6.5e-24
RGD|1597152	531	Zc3h12d "zinc finger CCCH type	0.753	0.190	0.553	7.1e-24
UNIPROTKB|D4A0I4	533	Zc3h12d "Protein Zc3h12d" [Rat	0.753	0.189	0.553	7.2e-24
UNIPROTKB|E1BTA2	426	ZC3H12A "Uncharacterized prote	0.649	0.204	0.597	1.1e-23

UNIPROTKB|J3QT81 ZC3H12D "Probable ribonuclease ZC3H12D" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/103 (57%), Positives = 69/103 (66%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct:   146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct:   204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A2A288 ZC3H12D "Probable ribonuclease ZC3H12D" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 9.1e-25, P = 9.1e-25
 Identities = 59/103 (57%), Positives = 69/103 (66%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct:   146 PIREQHVLAELER--QAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GPSL  FL
Sbjct:   204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFL 246

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2R4C6 ZC3H12D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 58/103 (56%), Positives = 70/103 (67%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V+GK    YDDRYIV+VA E DGVIVSND YRD+
Sbjct:   146 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEQDGVIVSNDNYRDL 203

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct:   204 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 246

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:3045313 Zc3h12d "zinc finger CCCH type containing 12D" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 4.3e-24, P = 4.3e-24
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V+GK    YDDRYIV+VA E DG+IVSND YRD+
Sbjct:   149 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEKDGIIVSNDNYRDL 206

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct:   207 QNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 249

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=ISO

UNIPROTKB|F1S7S2 ZC3H12D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V GK    YDDRYIV+VA + DGVIVSND YRD+
Sbjct:   148 PIREQHVLEELER--QAVLVYTPSRKVSGKRVVCYDDRYIVKVAYDQDGVIVSNDNYRDL 205

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L+ FL
Sbjct:   206 QSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLNNFL 248

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C3S0 ZC3H12D "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/86 (62%), Positives = 64/86 (74%)

Query:    47 ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
             IL YTPSR+V GK    YDDRYIV+VA E DGVIVSND YRD+  EN +WK  IE+RLLM
Sbjct:   177 ILVYTPSRKVKGKRVVCYDDRYIVKVAYEKDGVIVSNDHYRDLQNENPEWKWFIEQRLLM 236

Query:   107 FNFVKELLIFPQDPLGRDGPSLDEFL 132
             ++FV    + P DPLGR GP+L+ FL
Sbjct:   237 YSFVSNRFMPPDDPLGRHGPTLNNFL 262

GO:0005634 "nucleus" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA

MGI|MGI:2451333 Khnyn "KH and NYN domain containing" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 6.5e-24, P = 6.5e-24
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query:    37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKW 96
             F+Q  Y +S +L  TPSR +DGK   +YDDR++V++A E DG+IVSND++RD+ +E+DKW
Sbjct:   490 FLQKLYSLS-LLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKW 548

Query:    97 KATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLR 133
              A I  RLL F FV  L + P DPLGR+GP+LDEFL+
Sbjct:   549 MAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLK 585

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1597152 Zc3h12d "zinc finger CCCH type containing 12D" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 7.1e-24, P = 7.1e-24
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V+GK    YDDRYIV++A E DGVIVSND YRD+
Sbjct:   147 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKLAYEKDGVIVSNDNYRDL 204

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct:   205 QNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 247

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|D4A0I4 Zc3h12d "Protein Zc3h12d" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 7.2e-24, P = 7.2e-24
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query:    30 PFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDI 89
             P R   V  +L      +L YTPSR+V+GK    YDDRYIV++A E DGVIVSND YRD+
Sbjct:   149 PIREQHVLEELER--QAVLVYTPSRKVNGKRVVCYDDRYIVKLAYEKDGVIVSNDNYRDL 206

Query:    90 MQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFL 132
               EN +WK  IE+RLLMF+FV +  + P DPLGR GP+L  FL
Sbjct:   207 QNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFL 249

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA

UNIPROTKB|E1BTA2 ZC3H12A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 274 (101.5 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query:    47 ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
             IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLLM
Sbjct:   173 ILVFTPSRRVGGKRVVCYDDRFIVKLAHESDGIVVSNDTYRDLQNERPEWKKFIEERLLM 232

Query:   107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
             ++FV +  + P DPLGR GPSLD FLR
Sbjct:   233 YSFVNDKFMPPDDPLGRHGPSLDNFLR 259

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2A288	ZC12D_HUMAN	3, ., 1, ., -, ., -	0.5728	0.7537	0.1916	yes	N/A
Q8BIY3	ZC12D_MOUSE	3, ., 1, ., -, ., -	0.5533	0.7537	0.1894	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam11977	155	pfam11977, RNase_Zc3h12a, Zc3h12a-like Ribonucleas	4e-31

>gnl|CDD|221353 pfam11977, RNase_Zc3h12a, Zc3h12a-like Ribonuclease NYN domain

 Score =  108 bits (271), Expect = 4e-31
 Identities = 45/85 (52%), Positives = 64/85 (75%)

Query: 46  GILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
           G++ +TPSR +DG+   +YDDR+I+++A E DGVIVSND +RD+  E+ +WK  IE RLL
Sbjct: 71  GLIVFTPSRTLDGRRIVSYDDRFILELAEETDGVIVSNDNFRDLADESPEWKDIIEERLL 130

Query: 106 MFNFVKELLIFPQDPLGRDGPSLDE 130
           M+ FV +  + P DPLGR GPSL++
Sbjct: 131 MYTFVGDKFMLPDDPLGRLGPSLND 155

This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes. It has been suggested that this domain belongs to the PIN domain superfamily. This domain has also been identified as part of the NYN domain family. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF11977	155	RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai	100.0
KOG3777|consensus	443		99.93
KOG3777|consensus	443		97.39
PF11977	155	RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai	95.94
PF14626	122	RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN dom	92.14
PF12813	246	XPG_I_2: XPG domain containing	92.04
PF05991	166	NYN_YacP: YacP-like NYN domain; InterPro: IPR01029	87.12
COG1569	142	Predicted nucleic acid-binding protein, contains P	86.93
TIGR00305	114	probable toxin-antitoxin system toxin component, P	84.8
PRK09333	150	30S ribosomal protein S19e; Provisional	81.76
TIGR00028	142	Mtu_PIN_fam Mycobacterium tuberculosis PIN domain	81.66

>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []

Probab=100.00  E-value=2.3e-35  Score=223.65  Aligned_cols=126  Identities=37%  Similarity=0.575  Sum_probs=97.2

Q ss_pred             ccCceeecccccccceeeeeecC--cccccCChHH-------------HHHHhhhhcCcEEeCCCcccCCccccccchHH
Q psy6309           4 KSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQV-------------FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRY   68 (134)
Q Consensus         4 ~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~-------------~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~   68 (134)
                      .||...++++|+|..++.+|...  ..+.++.+.+             .++. ++++|.|.+||+++.+|+++++|||+|
T Consensus        15 ~~~~~~~f~~~~i~~~v~~~~~rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~-l~~~~~i~~tp~~~~~g~~~~~ydD~~   93 (155)
T PF11977_consen   15 SHGNQKFFSVRGIQIAVEYFKSRGHEVVVVFPPNYRYKKLAKKSDDQEELEK-LIRKGIIYFTPSGSNYGSRSRNYDDRY   93 (155)
T ss_dssp             HHTTTTSEEHHHHHHHHHHHHHTT---EEEEEEGGGGS-TTS-EESTCHHHH-HHHTTSEEEE-EEEETTEEEEB-HHHH
T ss_pred             hcCCCCCcCHHHHHHHHHHHHHcCCCeEEEEcchhhhccccCCCChHHHHHH-HHHCCeEEEcCCCCCCCCcccccchHH
Confidence            45556668889999888888777  3466666565             4555 469999999999999999999999999


Q ss_pred             HHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhh
Q psy6309          69 IVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDE  130 (134)
Q Consensus        69 il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~  130 (134)
                      ||++|.++||+|||||+|||++.++|+|+++|++|+|+|||++|.||||+||+||+||+|++
T Consensus        94 il~~A~~~~a~IVSND~frD~~~~~~~~~~~~~~~~i~~tf~~~~~~~~~d~~~r~~~~l~~  155 (155)
T PF11977_consen   94 ILYYAEEKDAVIVSNDRFRDHIFENPELRRWIERRLIRFTFVGDEFMPPPDPLGRVGPSLED  155 (155)
T ss_dssp             HHHHHHHTT-EEE-S---HHHHHH-HHHHHHHHHHEE--EEETTEEE--SSTTTTTS--HH-
T ss_pred             HHHHHHHcCCEEEeCchHHHHhhcchHHHHHHHHeeeeEEEECCEEEcCCCccCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999985

It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.

>KOG3777|consensus

Probab=99.93  E-value=2e-27  Score=207.71  Aligned_cols=129  Identities=33%  Similarity=0.528  Sum_probs=118.8

Q ss_pred             cccCceeecccccccceeeeeecC--cccccCChHHH--------HHHhhhhcCcEEeCCCcccCCccccccchHHHHHH
Q psy6309           3 YKSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQVF--------IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQV   72 (134)
Q Consensus         3 ~~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~~--------lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~   72 (134)
                      |-||=--+|+||++...++.|.+.  |-|+++.|.|.        ....++++.+++|||++.+.|++.+||||+|++++
T Consensus        24 ls~G~~~~f~~r~~~v~~~~~~~~~~rd~tv~~~~~r~e~~~p~~~l~~l~~~~~~~ftp~~~~~~~r~~c~~~rf~~~~  103 (443)
T KOG3777|consen   24 LSQGNEEVFSCRGILVSVDWFLQRGHRDITVLVPSWRKEATRPDAILRELEEKKILVFTPDRSIQGSRVICYDRRFSASL  103 (443)
T ss_pred             hcccchhheecccceeehhhhhhhcccCcchhchhhhhcCCchHHHHHHHHhccccccCCChhhccceeeeehhhhHhhh
Confidence            556666789999999999888887  99999999993        33446799999999999999999999999999999


Q ss_pred             HhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhhhhcC
Q psy6309          73 ATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF  134 (134)
Q Consensus        73 A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~~L~~  134 (134)
                      |.|++|+||+||+|||++-|.|   .+|++|+|+|+|+++.||+||||+||+||+|+.||++
T Consensus       104 ~~~s~~~~~~~dn~rd~~le~~---~~~~e~ll~~s~~~~~~mpPDdplgr~GPsl~~fL~k  162 (443)
T KOG3777|consen  104 ARESDGIVSLNDNYRDLILESP---RFVEERLLSYSFANSKFMPPDDPLGREGPSLDNFLSK  162 (443)
T ss_pred             hccccceecCCchHHHHHhhcc---cchhhHHHHhhhhhcccCCCCCcccccCcchhhhhhh
Confidence            9999999999999999999999   6799999999999999999999999999999999963

>KOG3777|consensus

Probab=97.39  E-value=0.00012  Score=65.05  Aligned_cols=39  Identities=31%  Similarity=0.516  Sum_probs=36.6

Q ss_pred             cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEE
Q psy6309           3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILH   49 (134)
Q Consensus         3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~   49 (134)
                      +++.+++|||+|.+.|++.+|||+|||        +++++|.+|+++
T Consensus        74 ~~~~~~~ftp~~~~~~~r~~c~~~rf~--------~~~~~~s~~~~~  112 (443)
T KOG3777|consen   74 EEKKILVFTPDRSIQGSRVICYDRRFS--------ASLARESDGIVS  112 (443)
T ss_pred             HhccccccCCChhhccceeeeehhhhH--------hhhhccccceec
Confidence            367789999999999999999999999        999999999998

>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []

Probab=95.94  E-value=0.006  Score=46.22  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=32.7

Q ss_pred             cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEE
Q psy6309           3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILH   49 (134)
Q Consensus         3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~   49 (134)
                      .+.|.+.+||++...|+...+|||+||        |+.|.+..|+|+
T Consensus        68 ~~~~~i~~tp~~~~~g~~~~~ydD~~i--------l~~A~~~~a~IV  106 (155)
T PF11977_consen   68 IRKGIIYFTPSGSNYGSRSRNYDDRYI--------LYYAEEKDAVIV  106 (155)
T ss_dssp             HHTTSEEEE-EEEETTEEEEB-HHHHH--------HHHHHHTT-EEE
T ss_pred             HHCCeEEEcCCCCCCCCcccccchHHH--------HHHHHHcCCEEE
Confidence            467999999999999999999999999        999988877777

It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.

>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain

Probab=92.14  E-value=0.12  Score=39.26  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             hhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhh
Q psy6309          42 YFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYR   87 (134)
Q Consensus        42 le~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fR   87 (134)
                      |.+.|+|.|.=-+.  -+    ---+-+++.|++++|++|||..||
T Consensus        55 L~~l~lIkFi~~~~--~~----~~~~eV~~~Aek~~GI~VSs~E~~   94 (122)
T PF14626_consen   55 LCDLDLIKFIEKRN--RK----KWFNEVLDEAEKTHGIFVSSSEYR   94 (122)
T ss_pred             HHhcCceeeecccc--HH----HHHHHHHHHHHHcCcEEECCHHHh
Confidence            45889998832221  01    112578999999999999999875

>PF12813 XPG_I_2: XPG domain containing

Probab=92.04  E-value=0.33  Score=39.82  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             cchHHHHHHHhhcCCEEEeCch
Q psy6309          64 YDDRYIVQVATEYDGVIVSNDR   85 (134)
Q Consensus        64 yDDr~il~~A~e~~G~IVSND~   85 (134)
                      .+|.+|..+|.++||.|+|||-
T Consensus        29 EAD~~~A~~A~~~~~~VLt~DS   50 (246)
T PF12813_consen   29 EADRECAALARKWGCPVLTNDS   50 (246)
T ss_pred             cchHHHHHHHHHcCCeEEccCC
Confidence            4999999999999999999984

>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana

Probab=87.12  E-value=0.85  Score=35.13  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=12.8

Q ss_pred             chHHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309          65 DDRYIVQVATEYDGVIVSNDRYRDIMQ   91 (134)
Q Consensus        65 DDr~il~~A~e~~G~IVSND~fRD~~~   91 (134)
                      .|+-+...|...||..+|...|.+.++
T Consensus       102 SD~~iq~~~~~~GA~~iss~ef~~~l~  128 (166)
T PF05991_consen  102 SDREIQRAARGRGAKRISSEEFLRELK  128 (166)
T ss_pred             CCHHHHHHHhhCCCEEEcHHHHHHHHH
Confidence            444444444444444444444444444

The function of this family is unknown.

>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]

Probab=86.93  E-value=1.2  Score=34.51  Aligned_cols=56  Identities=14%  Similarity=0.247  Sum_probs=40.5

Q ss_pred             HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCC-EEEeCchhhHHHhhcHHH
Q psy6309          37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDG-VIVSNDRYRDIMQENDKW   96 (134)
Q Consensus        37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G-~IVSND~fRD~~~e~p~~   96 (134)
                      .+..+.+..-.+..+|+..++-  .-+.+|.+.|++|.+-.| +|||-|+  |++..+++-
T Consensus        66 ~v~~l~~~~~~i~I~p~~~f~~--~RDp~Dn~~L~~A~~~kA~~lvTgD~--dLL~lr~~n  122 (142)
T COG1569          66 LVLVLFESVSLIAINPLEKFNI--CRDPKDNKLLALAYESKADYLVTGDQ--DLLVLRDEN  122 (142)
T ss_pred             HHHHHHHhheeEeecccccccc--cCCchHHHHHHHHHhccCCEEEEcch--hhheecccC
Confidence            4445444444555888876331  116788899999999999 9999999  999877654

>TIGR00305 probable toxin-antitoxin system toxin component, PIN family

Probab=84.80  E-value=1.2  Score=31.45  Aligned_cols=27  Identities=15%  Similarity=0.305  Sum_probs=23.3

Q ss_pred             cccchHHHHHHHhhcCC-EEEeCchhhHHH
Q psy6309          62 CAYDDRYIVQVATEYDG-VIVSNDRYRDIM   90 (134)
Q Consensus        62 ~~yDDr~il~~A~e~~G-~IVSND~fRD~~   90 (134)
                      -+.+|..++..|...++ +|||+|  ||+.
T Consensus        85 ~D~~D~~~l~~A~~~~ad~iVT~D--kdll  112 (114)
T TIGR00305        85 RDKKDNKFLNTAYASKANALITGD--TDLL  112 (114)
T ss_pred             CCchhHHHHHHHHhcCCCEEEECC--HHHh
Confidence            47889999999999998 999999  4654

This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.

>PRK09333 30S ribosomal protein S19e; Provisional

Probab=81.76  E-value=1.6  Score=34.03  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhhcHHHH
Q psy6309          38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWK   97 (134)
Q Consensus        38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e~p~~r   97 (134)
                      ||. ||+.|+|..+|    .|+++++-.-+++=++|.+         -+.++..++|++.
T Consensus       102 Lqq-LE~~glVek~~----~GR~lT~~G~~~LD~iA~~---------i~~~~~~~~p~l~  147 (150)
T PRK09333        102 LQQ-LEKAGLVEKTK----KGRVITPKGRSLLDNLAAE---------VKKELAEERPELE  147 (150)
T ss_pred             HHH-HHHCCCeeeCC----CCCEeCHHHHHHHHHHHHH---------HHHHHHhhCcccc
Confidence            777 59999999988    5888999998999899977         2455666667664

>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family

Probab=81.66  E-value=1.7  Score=30.58  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=23.1

Q ss_pred             cccchHHHHHHHhhcCCEEEeCchhhHH
Q psy6309          62 CAYDDRYIVQVATEYDGVIVSNDRYRDI   89 (134)
Q Consensus        62 ~~yDDr~il~~A~e~~G~IVSND~fRD~   89 (134)
                      .+..|..++..|.+.|+.+||+|+  |+
T Consensus       103 ~~~~D~~i~a~A~~~~~~lvT~D~--~f  128 (142)
T TIGR00028       103 RLVTDAHLAALAREHGAELVTFDR--GF  128 (142)
T ss_pred             CCchHHHHHHHHHHcCCEEEecCC--Cc
Confidence            368999999999999999999995  55

Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3v33_A	223	Crystal Structure Of Mcpip1 Conserved Domain With Z		1e-24
3v32_B	185	Crystal Structure Of Mcpip1 N-Terminal Conserved Do		1e-24

>pdb|3V33|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With Zinc-Finger Motif Length = 223

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 64/87 (73%)
Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLLM
Sbjct: 96  ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 155
Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 156 YSFVNDKFMPPDDPLGRHGPSLDNFLR 182

>pdb|3V32|B Chain B, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain Length = 185

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 64/87 (73%)
Query: 47  ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
           IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLLM
Sbjct: 96  ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 155
Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
           ++FV +  + P DPLGR GPSLD FLR
Sbjct: 156 YSFVNDKFMPPDDPLGRHGPSLDNFLR 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	3e-32
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	4e-30

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185

 Score =  111 bits (279), Expect = 3e-32
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 46  GILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
            IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +WK  IE RLL
Sbjct: 95  KILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLL 154

Query: 106 MFNFVKELLIFPQDPLGRDGPSLDEFLR 133
           M++FV +  + P DPLGR GPSLD FLR
Sbjct: 155 MYSFVNDKFMPPDDPLGRHGPSLDNFLR 182

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223

 Score =  107 bits (267), Expect = 4e-30
 Identities = 53/97 (54%), Positives = 65/97 (67%)

Query: 37  FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKW 96
            I        IL +TPSRRV GK    YDDR+IV++A E DG++VSND YRD+  E  +W
Sbjct: 86  HILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEW 145

Query: 97  KATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLR 133
           K  IE RLLM++FV +  + P DPLGR GPSLD FLR
Sbjct: 146 KRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLR 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	100.0
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	100.0
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	98.04
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	97.94
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.87
3ix7_A	134	Uncharacterized protein TTHA0540; unknown function	91.67
3i8o_A	142	KH domain-containing protein MJ1533; APC89320.5, m	88.27
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	86.13
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	81.35

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A

Probab=100.00  E-value=9.1e-48  Score=302.28  Aligned_cols=132  Identities=42%  Similarity=0.679  Sum_probs=115.4

Q ss_pred             CcccCceeecccccccceeeeeecC--cccccCChHH---------------HHHHhhhhcCcEEeCCCcccCCcccccc
Q psy6309           2 SYKSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQV---------------FIQLTYFVSGILHYTPSRRVDGKLQCAY   64 (134)
Q Consensus         2 ~~~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~---------------~lqlale~~G~l~~TPsr~~~gkr~~~y   64 (134)
                      +|.||....|+||+|..++.+|+..  +.|++|+|+|               +|++ |+++|+|++|||+++.|++++||
T Consensus        35 A~~~g~~~~Fs~rgI~~aV~yf~~rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~-L~~~g~l~~TPs~~~~g~~~~~y  113 (185)
T 3v32_B           35 AMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRE-LEKKKILVFTPSRRVGGKRVVCY  113 (185)
T ss_dssp             HHHHTTTTSEEHHHHHHHHHHHHHTTCCCEEEEEEGGGGSCCCTTSCEECTHHHHH-HHHTTCEEEECCCC-------CC
T ss_pred             HhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechHhhhcccccCCCCCHHHHHH-HHHCCCEEECCCcccCCCcccCc
Confidence            4667777789999999999999998  5688888888               2344 57999999999999999999999


Q ss_pred             chHHHHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhhhhcC
Q psy6309          65 DDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF  134 (134)
Q Consensus        65 DDr~il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~~L~~  134 (134)
                      ||+|||++|+++||+|||||+||||++|+|+|+++|++|+|+|||++|+||||||||||+||+|+|||+.
T Consensus       114 dD~~il~~A~~~~g~IVSND~~rD~~~~~p~~k~~Ie~rli~ytFv~d~Fmp~~dplgr~gp~l~~~l~~  183 (185)
T 3v32_B          114 DDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRK  183 (185)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCHHHHHHCHHHHHHHHHHEECCEEETTEEECCSSTTTTSSCCHHHHTBS
T ss_pred             cHHHHHHHHHHcCCEEEeCccHHHHHhhCHHHHHHHHhCcceeEEECCEEcCCCCCCCCCCCCHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999983

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=302.65  Aligned_cols=132  Identities=43%  Similarity=0.674  Sum_probs=122.5

Q ss_pred             CcccCceeecccccccceeeeeecC--cccccCChHHH--------------HHHhhhhcCcEEeCCCcccCCccccccc
Q psy6309           2 SYKSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQVF--------------IQLTYFVSGILHYTPSRRVDGKLQCAYD   65 (134)
Q Consensus         2 ~~~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~~--------------lqlale~~G~l~~TPsr~~~gkr~~~yD   65 (134)
                      +|.||....|+||+|..++.+|+..  +.|++|+|.|.              +...|+++|+|++|||+++.|++++|||
T Consensus        35 A~~~g~~~~Fs~rgI~~aV~yF~~RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~TPs~~v~G~r~~syd  114 (223)
T 3v33_A           35 AMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRVVCYD  114 (223)
T ss_dssp             HHHSSSTTSEEHHHHHHHHHHHHTTTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEECEEEETTEEEECCH
T ss_pred             HhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEECCCCCcCCccccccc
Confidence            4677777788999999999999999  56888888882              2234579999999999999999999999


Q ss_pred             hHHHHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhhhhc
Q psy6309          66 DRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLR  133 (134)
Q Consensus        66 Dr~il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~~L~  133 (134)
                      |+|||++|+++||+|||||+||||++|+|+|++||++|+|+|||++|+||||||||||+||+|+|||+
T Consensus       115 D~~iL~~A~~~~g~IVSND~yRD~~~e~p~~k~~Ie~rlI~ytFv~D~FmppdDplgR~Gp~l~~~L~  182 (223)
T 3v33_A          115 DRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLR  182 (223)
T ss_dssp             HHHHHHHHHHTTCEEECSCCCHHHHTTCHHHHHHHHHHEECCEEETTEEECCSSTTCTTSCCHHHHTB
T ss_pred             hHHHHHHHHHcCCEEEeCccHHHHHhhCHHHHHHHHhCeeeEEEECCEEeCCCCcccCCCCCHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999997

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A

Probab=98.04  E-value=2.4e-07  Score=72.45  Aligned_cols=74  Identities=32%  Similarity=0.589  Sum_probs=48.9

Q ss_pred             cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEe
Q psy6309           3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVS   82 (134)
Q Consensus         3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVS   82 (134)
                      ++.|++++||||.+.|++.+||||+||        ++.|.+..|+|+             + .|+| -+++.+       
T Consensus        92 ~~~g~l~~TPs~~~~g~~~~~ydD~~i--------l~~A~~~~g~IV-------------S-ND~~-rD~~~~-------  141 (185)
T 3v32_B           92 EKKKILVFTPSRRVGGKRVVCYDDRFI--------VKLAYESDGIVV-------------S-NDTY-RDLQGE-------  141 (185)
T ss_dssp             HHTTCEEEECCCC-------CCHHHHH--------HHHHHHTTCEEE-------------C-SCCC-HHHHHH-------
T ss_pred             HHCCCEEECCCcccCCCcccCccHHHH--------HHHHHHcCCEEE-------------e-CccH-HHHHhh-------
Confidence            367999999999999999999999999        999998888888             2 2222 234444       


Q ss_pred             CchhhHHHhhcHHHHHHHhccccc
Q psy6309          83 NDRYRDIMQENDKWKATIERRLLM  106 (134)
Q Consensus        83 ND~fRD~~~e~p~~r~~I~~RlL~  106 (134)
                      +..++++++++--...++.++.++
T Consensus       142 ~p~~k~~Ie~rli~ytFv~d~Fmp  165 (185)
T 3v32_B          142 RQEWKRFIEERLLMYSFVNDKFMP  165 (185)
T ss_dssp             CHHHHHHHHHHEECCEEETTEEEC
T ss_pred             CHHHHHHHHhCcceeEEECCEEcC
Confidence            667888888765444455565554

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=97.94  E-value=4.8e-07  Score=72.74  Aligned_cols=74  Identities=32%  Similarity=0.573  Sum_probs=55.9

Q ss_pred             cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEe
Q psy6309           3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVS   82 (134)
Q Consensus         3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVS   82 (134)
                      ++.|++++|||+.+.|++.++|||+||        |+.|.+..|+|+             +. |.| -+++.+       
T Consensus        92 ~k~g~L~~TPs~~v~G~r~~sydD~~i--------L~~A~~~~g~IV-------------SN-D~y-RD~~~e-------  141 (223)
T 3v33_A           92 EKKKILVFTPSRRVGGKRVVCYDDRFI--------VKLAYESDGIVV-------------SN-DTY-RDLQGE-------  141 (223)
T ss_dssp             HHTTCEEEECEEEETTEEEECCHHHHH--------HHHHHHTTCEEE-------------CS-CCC-HHHHTT-------
T ss_pred             HHCCCEEECCCCCcCCccccccchHHH--------HHHHHHcCCEEE-------------eC-ccH-HHHHhh-------
Confidence            357999999999999999999999999        999998888888             22 222 344555       


Q ss_pred             CchhhHHHhhcHHHHHHHhccccc
Q psy6309          83 NDRYRDIMQENDKWKATIERRLLM  106 (134)
Q Consensus        83 ND~fRD~~~e~p~~r~~I~~RlL~  106 (134)
                      +..+|++++++--...++++++++
T Consensus       142 ~p~~k~~Ie~rlI~ytFv~D~Fmp  165 (223)
T 3v33_A          142 RQEWKRFIEERLLMYSFVNDKFMP  165 (223)
T ss_dssp             CHHHHHHHHHHEECCEEETTEEEC
T ss_pred             CHHHHHHHHhCeeeEEEECCEEeC
Confidence            678899998864444445555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.87  E-value=1.9e-05  Score=67.65  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=55.6

Q ss_pred             HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHh---hcHHHHHHHhcccccceecC
Q psy6309          38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQ---ENDKWKATIERRLLMFNFVK  111 (134)
Q Consensus        38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~---e~p~~r~~I~~RlL~~tf~g  111 (134)
                      ++. +.+.+.+.+||..        ++||.|.|=.|-..++.|||||++|||.=   .+..|++|-+.|.+.|+|..
T Consensus       385 ~~~-~~~~~~~~~t~~~--------s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~  452 (501)
T 4g26_A          385 LEK-WKNAGALYATPPG--------SNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTR  452 (501)
T ss_dssp             HHH-HHHTTCEEEECTT--------CCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEET
T ss_pred             HHH-HHhcCeEEeCCCC--------CCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecC
Confidence            444 4689999999998        79999999999999999999999999974   34468888999999999874

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}

Probab=91.67  E-value=0.23  Score=36.55  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             cchHHHHHHHhhcCCEEEeCchh
Q psy6309          64 YDDRYIVQVATEYDGVIVSNDRY   86 (134)
Q Consensus        64 yDDr~il~~A~e~~G~IVSND~f   86 (134)
                      ..|..++++|.+.||++||||.-
T Consensus        85 ~vD~~ll~lA~~~~~~lvTnD~~  107 (134)
T 3ix7_A           85 SVDEKLLFLARDLEAALVTNDHA  107 (134)
T ss_dssp             SHHHHHHHHHHHTTCEEEESCHH
T ss_pred             cHHHHHHHHHHHhCCEEEeCCHH
Confidence            57889999999999999999976

>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}

Probab=88.27  E-value=0.29  Score=36.47  Aligned_cols=23  Identities=26%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             cchHHHHHHHhhcCCEEEeCchh
Q psy6309          64 YDDRYIVQVATEYDGVIVSNDRY   86 (134)
Q Consensus        64 yDDr~il~~A~e~~G~IVSND~f   86 (134)
                      .-|..++++|.+.||.+||||.-
T Consensus        93 ~vD~~l~~lA~~~~a~lvTnD~~  115 (142)
T 3i8o_A           93 EIDAMIRKVAKETNSILLTSDWI  115 (142)
T ss_dssp             SHHHHHHHHHHHTTCEEEESCHH
T ss_pred             cHHHHHHHHHHHhCCEEEcCCHH
Confidence            46889999999999999999976

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=86.13  E-value=0.57  Score=33.39  Aligned_cols=20  Identities=25%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             cchHHHHHHHhhcCCEEEeCc
Q psy6309          64 YDDRYIVQVATEYDGVIVSND   84 (134)
Q Consensus        64 yDDr~il~~A~e~~G~IVSND   84 (134)
                      + |..|+..|.+.+.++||||
T Consensus        99 ~-D~~Ila~A~~~~~~LvT~D  118 (147)
T 1o4w_A           99 G-DPSLIEAAEKYGCILITND  118 (147)
T ss_dssp             S-HHHHHHHHHHHTCEEECCC
T ss_pred             c-hHHHHHHHHHhCCEEEECC
Confidence            6 8899999999999999999

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=81.35  E-value=0.6  Score=34.21  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             ccchHHHHHHHhhcCCEEEeCch
Q psy6309          63 AYDDRYIVQVATEYDGVIVSNDR   85 (134)
Q Consensus        63 ~yDDr~il~~A~e~~G~IVSND~   85 (134)
                      +..|..++.+|.+.++.|||||.
T Consensus        83 s~~D~~lIaLA~~l~~~lvT~D~  105 (165)
T 2lcq_A           83 SKADIEVLALAYELKGEIFSDDY  105 (165)
T ss_dssp             CHHHHHHHHHHHHHTCCEECCCH
T ss_pred             CHHHHHHHHhHHHhCCeEEcCcH
Confidence            46789999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00