Psyllid ID: psy6385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHcccccccccHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccEEcccccccccc
Coil and Loop (DISEMBL)
MISGLQEIDKLKSQVQDIHVPLEVfdyidqgrnpqlytKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAirggdetppsy
Flexible Loop (DISEMBL)
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEkaltkneqvkgKIDAYRKFKAHMLVELSGAFPNELAKYRAIREkaltkneqvkgKIDAYRKFKAHMLVELSGAFPNELAKYRAirggdetppsy
Low Complexity Region (SEG)
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Disordered region (IsUnstruct)
*************QVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRA***********
Disordered Region (DISOPRED)
***G*****KL*SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAK*********************************************************
Disordered Region (DISEMBL)
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRG********
Disordered Region (DISPRO)
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTK*******IDA*****AHML*ELSG*FPN**A*********E*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q16G71	130	Mediator of RNA polymeras	N/A	N/A	0.613	0.646	0.752	2e-33
Q7Q5R5	130	Mediator of RNA polymeras	yes	N/A	0.613	0.646	0.741	4e-33
Q9GYU7	133	Mediator of RNA polymeras	yes	N/A	0.649	0.669	0.644	5e-30
Q6DJ25	135	Mediator of RNA polymeras	yes	N/A	0.620	0.629	0.670	8e-30
Q9CXU0	135	Mediator of RNA polymeras	yes	N/A	0.620	0.629	0.658	2e-29
Q6IP67	135	Mediator of RNA polymeras	N/A	N/A	0.620	0.629	0.658	2e-29
Q5R6P5	135	Mediator of RNA polymeras	yes	N/A	0.620	0.629	0.658	3e-29
Q9BTT4	135	Mediator of RNA polymeras	yes	N/A	0.620	0.629	0.658	3e-29
Q3ZCF2	135	Mediator of RNA polymeras	yes	N/A	0.620	0.629	0.658	3e-29
Q0VIA1	134	Mediator of RNA polymeras	yes	N/A	0.613	0.626	0.666	1e-28

>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 79/85 (92%), Gaps = 1/85 (1%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLK+QV D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+YR
Sbjct: 44  LVTGLQEIDKLKNQV-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK++++ EL   FP E+AKY+AIR
Sbjct: 103 KFKSNLMKELDETFPTEIAKYKAIR 127

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 80/85 (94%), Gaps = 1/85 (1%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLK+Q+ D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+YR
Sbjct: 44  LVTGLQEIDKLKNQI-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK++++ ELS  FP E++KY+AIR
Sbjct: 103 KFKSNLMKELSETFPVEISKYKAIR 127

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9GYU7|MED10_DROME Mediator of RNA polymerase II transcription subunit 10 OS=Drosophila melanogaster GN=MED10 PE=1 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVF-DYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 59
           +++GLQEIDKL+SQVQD++VP EVF DYIDQ +NPQLYTKDC+EKAL KNE+VKGKI+  
Sbjct: 44  LVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGL 103

Query: 60  RKFKAHMLVELSGAFPNELAKYRAIREKAL 89
           +KFK ++L+EL   FPNE+  YRA R+ ++
Sbjct: 104 KKFKTNLLLELYKTFPNEMNNYRAYRKDSM 133

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for activated transcription of the MtnA, MtnB and MtnD genes.

Drosophila melanogaster (taxid: 7227)

>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 73/85 (85%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  LVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKY+AIR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAIR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 72/85 (84%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           ++ GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  LVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKY+A+R
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAVR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Pongo abelii (taxid: 9601)

>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFK+ ++ ELS  FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID   
Sbjct: 44  MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAI 84
           KFK+ ++ EL   FP E+AKY+AI
Sbjct: 104 KFKSLLISELGKVFPEEMAKYKAI 127

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Negatively regulates the Wnt signaling pathway and positively regulates the Nodal signaling pathway. Required for cardiac cushion formation.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
307204502	131	Mediator of RNA polymerase II transcript	0.620	0.648	0.905	3e-39
322781562	133	hypothetical protein SINV_14848 [Solenop	0.620	0.639	0.905	3e-39
307181347	131	Mediator of RNA polymerase II transcript	0.620	0.648	0.905	4e-39
380012559	131	PREDICTED: mediator of RNA polymerase II	0.620	0.648	0.894	1e-38
242008159	149	nut2, putative [Pediculus humanus corpor	0.620	0.570	0.870	2e-38
340717881	131	PREDICTED: mediator of RNA polymerase II	0.620	0.648	0.894	2e-38
66531176	131	PREDICTED: mediator of RNA polymerase II	0.620	0.648	0.894	2e-38
156542032	131	PREDICTED: mediator of RNA polymerase II	0.620	0.648	0.882	2e-38
332028006	131	Mediator of RNA polymerase II transcript	0.620	0.648	0.882	7e-38
91079352	131	PREDICTED: similar to AGAP006248-PA [Tri	0.620	0.648	0.858	2e-37

>gi|307204502|gb|EFN83182.1| Mediator of RNA polymerase II transcription subunit 10 [Harpegnathos saltator]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 83/85 (97%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           ++SGLQE+DKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVSGLQEVDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FPNELAKYRAIR
Sbjct: 104 KFKANMLVELNRVFPNELAKYRAIR 128

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322781562|gb|EFZ10240.1| hypothetical protein SINV_14848 [Solenopsis invicta]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 83/85 (97%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 46  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 105

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FPNELAKYRAIR
Sbjct: 106 KFKANMLVELNRVFPNELAKYRAIR 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181347|gb|EFN68975.1| Mediator of RNA polymerase II transcription subunit 10 [Camponotus floridanus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 83/85 (97%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FPNELAKYRAIR
Sbjct: 104 KFKANMLVELNRVFPNELAKYRAIR 128

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012559|ref|XP_003690347.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Apis florea]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 82/85 (96%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FP ELAKYRAIR
Sbjct: 104 KFKANMLVELTRVFPQELAKYRAIR 128

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008159|ref|XP_002424879.1| nut2, putative [Pediculus humanus corporis] gi|212508444|gb|EEB12141.1| nut2, putative [Pediculus humanus corporis]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 82/85 (96%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           ++ GLQEIDKLKSQVQ++HVPLEVF+YIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVHGLQEIDKLKSQVQEVHVPLEVFEYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKAH+LVEL+ AFPNE+ KYRAIR
Sbjct: 104 KFKAHLLVELNAAFPNEITKYRAIR 128

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717881|ref|XP_003397402.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Bombus terrestris] gi|350400264|ref|XP_003485779.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Bombus impatiens]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 83/85 (97%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FP+ELAKYRAIR
Sbjct: 104 KFKANMLVELTRVFPHELAKYRAIR 128

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66531176|ref|XP_624779.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10 [Apis mellifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 82/85 (96%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FP ELAKYRAIR
Sbjct: 104 KFKANMLVELTRVFPQELAKYRAIR 128

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542032|ref|XP_001600793.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Nasonia vitripennis]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 83/85 (97%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLK+QVQD+HVPLEVFDYIDQGRNPQLYTKDCI+KALTKNEQVKGKIDAYR
Sbjct: 44  LVTGLQEIDKLKAQVQDVHVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FPNELAKYRAIR
Sbjct: 104 KFKANMLVELNRVFPNELAKYRAIR 128

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028006|gb|EGI68057.1| Mediator of RNA polymerase II transcription subunit 10 [Acromyrmex echinatior]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 82/85 (96%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR
Sbjct: 44  LVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+MLVEL+  FP+EL KYRAIR
Sbjct: 104 KFKANMLVELNRVFPHELTKYRAIR 128

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079352|ref|XP_969834.1| PREDICTED: similar to AGAP006248-PA [Tribolium castaneum] gi|270004361|gb|EFA00809.1| hypothetical protein TcasGA2_TC003696 [Tribolium castaneum]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 80/85 (94%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           ++ GLQE+DKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKAL KNEQVKGKIDAYR
Sbjct: 44  LVHGLQEVDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALAKNEQVKGKIDAYR 103

Query: 61  KFKAHMLVELSGAFPNELAKYRAIR 85
           KFKA+ML+ELS  FP EL+KYRAIR
Sbjct: 104 KFKANMLLELSKTFPTELSKYRAIR 128

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0036581	133	MED10 "Mediator complex subuni	0.649	0.669	0.644	1.5e-28
UNIPROTKB|E1BVD0	134	MED10 "Uncharacterized protein	0.620	0.634	0.658	5e-28
UNIPROTKB|F1S049	135	MED10 "Uncharacterized protein	0.620	0.629	0.658	8.2e-28
UNIPROTKB|Q3ZCF2	135	MED10 "Mediator of RNA polymer	0.620	0.629	0.658	8.2e-28
UNIPROTKB|Q9BTT4	135	MED10 "Mediator of RNA polymer	0.620	0.629	0.658	8.2e-28
MGI|MGI:106331	135	Med10 "mediator of RNA polymer	0.620	0.629	0.658	8.2e-28
RGD|1310128	135	Med10 "mediator complex subuni	0.620	0.629	0.658	8.2e-28
UNIPROTKB|F1PPU6	104	MED10 "Uncharacterized protein	0.620	0.817	0.658	8.2e-28
ZFIN|ZDB-GENE-070117-2423	134	med10 "mediator of RNA polymer	0.613	0.626	0.666	2.8e-27
WB|WBGene00007014	173	mdt-10 [Caenorhabditis elegans	0.627	0.497	0.465	3.1e-19

FB|FBgn0036581 MED10 "Mediator complex subunit 10" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 58/90 (64%), Positives = 76/90 (84%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVF-DYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 59
             +++GLQEIDKL+SQVQD++VP EVF DYIDQ +NPQLYTKDC+EKAL KNE+VKGKI+  
Sbjct:    44 LVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGL 103

Query:    60 RKFKAHMLVELSGAFPNELAKYRAIREKAL 89
             +KFK ++L+EL   FPNE+  YRA R+ ++
Sbjct:   104 KKFKTNLLLELYKTFPNEMNNYRAYRKDSM 133

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|E1BVD0 MED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             M++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 MVTGLQDIDKCRQQLHDISVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ EL+  FP ++AKY+AIR
Sbjct:   104 KFKSLLIQELTKVFPEDMAKYKAIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1S049 MED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q3ZCF2 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9BTT4 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:106331 Med10 "mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1310128 Med10 "mediator complex subunit 10" [Rattus norvegicus (taxid:10116)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIR 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1PPU6 MED10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/85 (65%), Positives = 73/85 (85%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    13 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 72

Query:    61 KFKAHMLVELSGAFPNELAKYRAIR 85
             KFK+ ++ ELS  FP ++AKYR+IR
Sbjct:    73 KFKSLLIQELSKVFPEDMAKYRSIR 97

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-070117-2423 med10 "mediator of RNA polymerase II transcription, subunit 10 homolog" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID   
Sbjct:    44 MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103

Query:    61 KFKAHMLVELSGAFPNELAKYRAI 84
             KFK+ ++ EL   FP E+AKY+AI
Sbjct:   104 KFKSLLISELGKVFPEEMAKYKAI 127

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

WB|WBGene00007014 mdt-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 40/86 (46%), Positives = 61/86 (70%)

Query:     1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
             ++ GLQ++D++K    D  VPL++  Y+D G+NP LY+K C+EK L KN+ V GKI+ Y+
Sbjct:    83 LVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCMEKTLEKNKAVNGKIEIYK 142

Query:    61 KFKAHMLVELSGAFPNELAKYRAIRE 86
             KF+AH++ E S   P+ +  YR+IRE
Sbjct:   143 KFRAHLMKEFSEEMPDLVMYYRSIRE 168

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BTT4	MED10_HUMAN	No assigned EC number	0.6588	0.6204	0.6296	yes	N/A
Q9CXU0	MED10_MOUSE	No assigned EC number	0.6588	0.6204	0.6296	yes	N/A
Q5R6P5	MED10_PONAB	No assigned EC number	0.6588	0.6204	0.6296	yes	N/A
Q6DJ25	MED10_XENTR	No assigned EC number	0.6705	0.6204	0.6296	yes	N/A
Q0VIA1	MED10_DANRE	No assigned EC number	0.6666	0.6131	0.6268	yes	N/A
Q3ZCF2	MED10_BOVIN	No assigned EC number	0.6588	0.6204	0.6296	yes	N/A
Q9GYU7	MED10_DROME	No assigned EC number	0.6444	0.6496	0.6691	yes	N/A
Q16G71	MED10_AEDAE	No assigned EC number	0.7529	0.6131	0.6461	N/A	N/A
Q7Q5R5	MED10_ANOGA	No assigned EC number	0.7411	0.6131	0.6461	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
pfam09748	120	pfam09748, Med10, Transcription factor subunit Med	2e-38

>gnl|CDD|150423 pfam09748, Med10, Transcription factor subunit Med10 of Mediator complex

 Score =  125 bits (317), Expect = 2e-38
 Identities = 43/84 (51%), Positives = 61/84 (72%)

Query: 1   MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
           ++ GLQ +DKL  Q+ D+++PLEV  YID GRNP LYT++ +E  L KN+ VKGK+ A++
Sbjct: 37  LVRGLQSLDKLAQQLSDVNIPLEVIQYIDDGRNPDLYTREFVELVLRKNQYVKGKMHAFK 96

Query: 61  KFKAHMLVELSGAFPNELAKYRAI 84
           KF+  +  ELS AFP  +A+YR I
Sbjct: 97  KFRDVLAEELSEAFPELVAEYRDI 120

Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG3046|consensus	147		100.0
PF09748	128	Med10: Transcription factor subunit Med10 of Media	100.0
KOG3046|consensus	147		99.71
PF09748	128	Med10: Transcription factor subunit Med10 of Media	98.98
PF05823	154	Gp-FAR-1: Nematode fatty acid retinoid binding pro	82.8
cd08812	88	CARD_RIG-I_like Caspase activation and recruitment	81.49

>KOG3046|consensus

Probab=100.00  E-value=7.5e-36  Score=230.04  Aligned_cols=89  Identities=54%  Similarity=0.969  Sum_probs=86.0

Q ss_pred             CchhhhhHHhhhhhcCCCCChHHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy6385           1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAK   80 (137)
Q Consensus         1 lV~~Lq~ld~~k~~~~~i~IPlEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~   80 (137)
                      ||.+|+.++++.+.++++.||+||++|||||||||+|||+|+|+|+++||+++||++||++||++|+++|+++|||+++.
T Consensus        53 Lv~~L~~l~~~s~k~n~i~IPleVl~yIddGrNPd~ytke~le~~~~kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~  132 (147)
T KOG3046|consen   53 LVRGLQDLDKLSSKLNDIQIPLEVLEYIDDGRNPDLYTKEFLEKCLAKNQYVKGKIDAFKKFRKHLAEELSQEFPELVDP  132 (147)
T ss_pred             HHHHhhhhHHHHHhhccccCcHHHHHHHhcCCCccHHHHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy6385          81 YRAIREKAL   89 (137)
Q Consensus        81 y~~ireraL   89 (137)
                      |+.||++..
T Consensus       133 yr~Ir~e~~  141 (147)
T KOG3046|consen  133 YRSIRAEDA  141 (147)
T ss_pred             HHHHHhccC
Confidence            999997654

>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=2.7e-34  Score=215.75  Aligned_cols=84  Identities=45%  Similarity=0.836  Sum_probs=81.0

Q ss_pred             CchhhhhHHhhhhh-------cCCCCChHHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhh
Q psy6385           1 MISGLQEIDKLKSQ-------VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGA   73 (137)
Q Consensus         1 lV~~Lq~ld~~k~~-------~~~i~IPlEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~   73 (137)
                      ||++|++|+++++.       +++++||+|||+|||+|||||+|||||||+|+++||+++||++||++||++|+++|+++
T Consensus        38 lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~GrNPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~  117 (128)
T PF09748_consen   38 LVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGRNPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLAEELASA  117 (128)
T ss_pred             HHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999998       77999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHH
Q psy6385          74 FPNELAKYRAI   84 (137)
Q Consensus        74 FPel~~~y~~i   84 (137)
                      |||+.+.|+.|
T Consensus       118 fPe~~~~~~~i  128 (128)
T PF09748_consen  118 FPELKEDVRRI  128 (128)
T ss_pred             ChHHHHHHhhC
Confidence            99999999875

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>KOG3046|consensus

Probab=99.71  E-value=1e-17  Score=129.62  Aligned_cols=53  Identities=47%  Similarity=0.771  Sum_probs=48.1

Q ss_pred             HHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHhhChHHHHHHhHhhCCCCCC
Q psy6385          82 RAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETP  134 (137)
Q Consensus        82 ~~ireraLakN~~~~gk~~~~~~~r~~l~~el~~~fp~~~~~yr~ir~~~~~~  134 (137)
                      +..-++|++|||.||||||+||+||+||++||+|+|||+|+.||.||+.++++
T Consensus        91 ke~le~~~~kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~yr~Ir~e~~~~  143 (147)
T KOG3046|consen   91 KEFLEKCLAKNQYVKGKIDAFKKFRKHLAEELSQEFPELVDPYRSIRAEDAPE  143 (147)
T ss_pred             HHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHHHHHHHhccCcc
Confidence            45668899999999999999999999999999999999999999999955443

>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=98.98  E-value=6e-10  Score=83.89  Aligned_cols=46  Identities=35%  Similarity=0.555  Sum_probs=42.7

Q ss_pred             HHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHhhChHHHHHHhHh
Q psy6385          82 RAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAI  127 (137)
Q Consensus        82 ~~ireraLakN~~~~gk~~~~~~~r~~l~~el~~~fp~~~~~yr~i  127 (137)
                      ++.-+.+..+|+.+|||+++|++||.+|.+||+++||++++.|+.|
T Consensus        83 re~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe~~~~~~~i  128 (128)
T PF09748_consen   83 REFVELVRRENQYVKGKMEAFKSFRDVLAEELASAFPELKEDVRRI  128 (128)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHhhC
Confidence            3455788999999999999999999999999999999999999986

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides

Probab=82.80  E-value=5.9  Score=30.69  Aligned_cols=101  Identities=18%  Similarity=0.302  Sum_probs=50.3

Q ss_pred             CChHHHHHHHhc------------CCCCchhH--HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHH-------
Q psy6385          19 HVPLEVFDYIDQ------------GRNPQLYT--KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNE-------   77 (137)
Q Consensus        19 ~IPlEVl~yID~------------GrNPDiYT--refvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel-------   77 (137)
                      -||.||++++++            .+|..-|+  -|++...-.++--+.+|++.+   ++.+.+.+..-=|+=       
T Consensus         9 ~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~~de~i~~LK~ksP~L~~k~~~l---~~~~k~ki~~L~peak~Fv~~l   85 (154)
T PF05823_consen    9 LIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKNEDEMIAALKEKSPSLYEKAEKL---RDKLKKKIDKLSPEAKAFVKEL   85 (154)
T ss_dssp             T--HHHHHHHHH--TTTHHHHHHHHTT-------TTHHHHHHHH-HHHHHHHHHH---HHHHHHTTTT--HHHHHHHHHH
T ss_pred             hCcHHHHHHHHcCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHcCCHHHHHHHHHH
Confidence            478888887654            34444444  457777778888888777644   555555554444442       


Q ss_pred             HHHHHHHHhhhhhh--------hhhccchHHHHHHHHHHHHHHHHhhChHHHH
Q psy6385          78 LAKYRAIREKALTK--------NEQVKGKIDAYRKFKAHMLVELSGAFPNELA  122 (137)
Q Consensus        78 ~~~y~~ireraLak--------N~~~~gk~~~~~~~r~~l~~el~~~fp~~~~  122 (137)
                      .+.++.+....++.        .+..++-++.|+.|-.-.=.+|..+||.-+.
T Consensus        86 i~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~  138 (154)
T PF05823_consen   86 IAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIAS  138 (154)
T ss_dssp             HHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT---
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchh
Confidence            23333333332221        1334566688888888888899999997654

Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.

>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases

Probab=81.49  E-value=4.8  Score=28.34  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=57.6

Q ss_pred             hhHHhhhhhcCCCCChHHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH-HHHhhchHHHHHHHHH
Q psy6385           6 QEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLV-ELSGAFPNELAKYRAI   84 (137)
Q Consensus         6 q~ld~~k~~~~~i~IPlEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~-el~~~FPel~~~y~~i   84 (137)
                      +-|.+....+...-.|.+|+.|+-.     .+|.+.+|.++++ ...+|.+.|...|=+.|.+ .=...||...+..+..
T Consensus         6 ~lL~~~~~~l~~~l~p~~il~~l~~-----~L~~~~~e~I~a~-~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~   79 (88)
T cd08812           6 RLLERLQPLLKDTIIPRDILDHLPE-----CLTDEDKEQILAE-ERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRT   79 (88)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH-----HcCHHHHHHHHHH-HhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHc
Confidence            4455556666566789999999976     9999999999986 4556999999999888887 5567788887776654


Q ss_pred             H
Q psy6385          85 R   85 (137)
Q Consensus        85 r   85 (137)
                      -
T Consensus        80 g   80 (88)
T cd08812          80 G   80 (88)
T ss_pred             C
Confidence            3

Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2w9y_A	140	CE-FAR-7, fatty acid/retinol binding protein prote	80.8

>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}

Probab=80.80  E-value=3.8  Score=30.91  Aligned_cols=98  Identities=10%  Similarity=0.153  Sum_probs=70.5

Q ss_pred             CChHHHHHHHhc------------CCCCchhH--HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchH-------H
Q psy6385          19 HVPLEVFDYIDQ------------GRNPQLYT--KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPN-------E   77 (137)
Q Consensus        19 ~IPlEVl~yID~------------GrNPDiYT--refvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPe-------l   77 (137)
                      -||-||+++..+            .+|-+-|+  .+++...-.++.-.-.|++   .+|+.|...|..-=||       +
T Consensus        15 ~iP~ev~~f~~~Lt~eeK~~Lkev~kn~~~f~~e~e~i~alK~KSp~L~~K~~---~l~~~lk~Ki~~L~Peak~Fv~kl   91 (140)
T 2w9y_A           15 FFPTEQLEFSSSITADEKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRLA---TVLEGNKKRLDGLSPAAVEYAKKL   91 (140)
T ss_dssp             TCCHHHHHHHHHCCTTTHHHHHHHHTTCCC----TTHHHHHHHHCHHHHHHHH---HHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred             HCcHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            589999987643            56777776  3478888888888888876   5677788777766666       4


Q ss_pred             HHHHHHHHhhhhhhh----hhccchHHHHHHHHHHHHHHHHhhChH
Q psy6385          78 LAKYRAIREKALTKN----EQVKGKIDAYRKFKAHMLVELSGAFPN  119 (137)
Q Consensus        78 ~~~y~~ireraLakN----~~~~gk~~~~~~~r~~l~~el~~~fp~  119 (137)
                      .+.++.++...++-.    ..+++-+++|+.|-.-.=+||..+||.
T Consensus        92 i~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~FP~  137 (140)
T 2w9y_A           92 IHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNNPD  137 (140)
T ss_dssp             HHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCcC
Confidence            556666665533322    346778899999999999999999995

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00