Psyllid ID: psy639

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
AEDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKETLP
Secondary Structure (PSIPRED)
cHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHcccHcHHHHHHHHHcHHHcccc
Coil and Loop (DISEMBL)
aedrrrhslsvippiicdprhpftgprfinnngrvtdyEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLerrtpsdcvEYYYLSKkrenykraiptnnmlmketlp
Flexible Loop (DISEMBL)
aedrrrhslsvippiicdprhpftgprfinnngRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLiasflerrtpsDCVEYYylskkrenykraiptnnmlmketlp
Low Complexity Region (SEG)
AEDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKETLP
Disordered region (IsUnstruct)
**********VIPPIICDPRHPFTGPRFINNNGRVTDYE********AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKR*******************
Disordered Region (DISOPRED)
******HSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN*****************
Disordered Region (DISEMBL)
********LSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKETLP
Disordered Region (DISPRO)
****RRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AEDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKETLP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9Y618	2525	Nuclear receptor corepres	yes	N/A	0.859	0.038	0.48	1e-21
Q9WU42	2472	Nuclear receptor corepres	yes	N/A	0.807	0.037	0.510	2e-21
Q60974	2453	Nuclear receptor corepres	no	N/A	0.859	0.039	0.48	9e-21
O75376	2440	Nuclear receptor corepres	no	N/A	0.859	0.040	0.48	9e-21
Q4KKX4	2494	Nuclear receptor corepres	yes	N/A	0.859	0.039	0.47	1e-20
Q8QG78	2498	Nuclear receptor corepres	N/A	N/A	0.859	0.039	0.46	9e-20
Q55DP9	1448	Myb-like protein P OS=Dic	yes	N/A	0.824	0.064	0.319	4e-10
P25357	1226	Probable DNA-binding prot	yes	N/A	0.815	0.075	0.326	4e-07
Q10369	661	Uncharacterized protein C	yes	N/A	0.824	0.142	0.257	1e-05
P34333	1866	Gex-3-interacting protein	no	N/A	0.438	0.026	0.38	8e-05

>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K
Sbjct: 386 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREK 443

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           ++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct: 444 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483

Transcriptional corepressor of NR4A2/NURR1 and acts through histone deacetylases (HDACs) to keep promoters of NR4A2/NURR1 target genes in a repressed deacetylated state (By similarity). Mediates the transcriptional repression activity of some nuclear receptors by promoting chromatin condensation, thus preventing access of the basal transcription. Isoform 1 and isoform 5 have different affinities for different nuclear receptors.
Homo sapiens (taxid: 9606)

>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 9   LSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK 68
           L+VIPP++ D        +FIN NG + D     +DR    MW++QER+ FR+K++ H K
Sbjct: 392 LAVIPPMLYDADQQRI--KFINMNGLMDDPMKVYKDRQVTNMWSEQERDTFREKFMQHPK 449

Query: 69  NFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           NFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct: 450 NFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483

Transcriptional corepressor of NR4A2/NURR1 and acts through histone deacetylases (HDACs) to keep promoters of NR4A2/NURR1 target genes in a repressed deacetylated state. Mediates the transcriptional repression activity of some nuclear receptors by promoting chromatin condensation, thus preventing access of the basal transcription.

Mus musculus (taxid: 10090)

>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct: 394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +
Sbjct: 452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALV 491

Mediates transcriptional repression by certain nuclear receptors. Part of a complex which promotes histone deacetylation and the formation of repressive chromatin structures which may impede the access of basal transcription factors.

Mus musculus (taxid: 10090)

>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct: 394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +
Sbjct: 452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALV 491

Mediates transcriptional repression by certain nuclear receptors. Part of a complex which promotes histone deacetylation and the formation of repressive chromatin structures which may impede the access of basal transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus tropicalis GN=ncor1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F++K
Sbjct: 386 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEK 443

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           ++ H KNFGLIAS+LER+T SDCV YYYL+KK EN+K  +
Sbjct: 444 FVQHPKNFGLIASYLERKTVSDCVLYYYLTKKNENFKALV 483

Mediates transcriptional repression by certain nuclear receptors. Participates in complexes which promote histone deacetylation and the formation of repressive chromatin structures which may impede access by the basal transcription machinery.

Xenopus tropicalis (taxid: 8364)

>sp|Q8QG78|NCOR1_XENLA Nuclear receptor corepressor 1 OS=Xenopus laevis GN=ncor1 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F++K
Sbjct: 386 EKQMRQLSVIPPMMFDAEQRRV--KFINTNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEK 443

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           ++ H KNFGLIAS+LER+  SDCV YYYL+KK EN K  +
Sbjct: 444 FVRHPKNFGLIASYLERKNVSDCVLYYYLTKKNENLKSLV 483

Mediates transcriptional repression by certain nuclear receptors. Participates in complexes which promote histone deacetylation and the formation of repressive chromatin structures which may impede access by the basal transcription machinery.

Xenopus laevis (taxid: 8355)

>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 6    RHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIH 65
            +  +++IPP++           +IN+NG + D  A+ + R    +WT+ E++ F  KY+ 
Sbjct: 1038 QQGVAIIPPMLSPEERNI---HYINHNGFIVDPIAQEKQRKSLIIWTEDEKQKFVKKYLQ 1094

Query: 66   HQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
            + K F  IASF + RT  D + +YY +KK  N K+ +
Sbjct: 1095 YPKKFSKIASFFDNRTTEDMIVFYYNNKKTLNLKQLL 1131

Dictyostelium discoideum (taxid: 44689)

>sp|P25357|SNT1_YEAST Probable DNA-binding protein SNT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNT1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 7   HSLSVIPPIICDP--RHPFTGPRFINNNGRVTDYE--AEMRDRAQAKMWTQQEREVFRDK 62
            + + IPP+I DP  +H +   +F + N  VTD +  A    +  +  +T  E  +F + 
Sbjct: 628 QAAATIPPLILDPIRKHSY---KFCDVNNLVTDKKLWASRILKDASDNFTDHEHSLFLEG 684

Query: 63  YIHHQKNFGLIASFLER-RTPSDCVEYYYLSKKRENYKRAI 102
           Y+ H K FG I+ ++   R+P +CV +YY +KK  NYK+ +
Sbjct: 685 YLIHPKKFGKISHYMGGLRSPEECVLHYYRTKKTVNYKQLL 725

Part of the Set3C complex, which is required to repress early/middle sporulation genes during meiosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10369|YDBJ_SCHPO Uncharacterized protein C22E12.19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.19 PE=4 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 9   LSVIPPIICDPRHPFTGPRFINNNGR-VTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQ 67
           ++ IPP+I          ++ N+  R VTD       ++   +W +++  +F  ++I H 
Sbjct: 210 IATIPPMILSEEE--VKSQYFNDQSRLVTDCPKFYHFQSMPDIWNEEQHSIFVQQFILHG 267

Query: 68  KNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPT 104
           K FG IA  +  +   +CV +YYL+K+  +Y+  + +
Sbjct: 268 KKFGKIAEAVPGKNSKECVLHYYLTKRTTDYRALVAS 304

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P34333|GEI8_CAEEL Gex-3-interacting protein 8 OS=Caenorhabditis elegans GN=gei-8 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 51  WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKR 100
           W+ +ER +F+ +   H K F  +  F   +T SD V +YY++KK E+YK+
Sbjct: 218 WSPEERSLFKSRQADHVKIFHGLTEFFVDKTASDLVLFYYMNKKTEDYKK 267

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
328714668	1765	PREDICTED: hypothetical protein LOC10016	0.850	0.054	0.533	7e-25
241595414	985	hypothetical protein IscW_ISCW008711 [Ix	0.973	0.112	0.436	9e-22
242011439	686	conserved hypothetical protein [Pediculu	0.868	0.144	0.475	2e-21
195447120	3427	GK25336 [Drosophila willistoni] gi|19416	0.868	0.028	0.475	1e-20
270011930	675	hypothetical protein TcasGA2_TC006021 [T	0.868	0.146	0.475	1e-20
327276102	2536	PREDICTED: nuclear receptor corepressor	0.859	0.038	0.48	2e-20
443718694	361	hypothetical protein CAPTEDRAFT_73417, p	0.868	0.274	0.445	2e-20
170032616	1138	nuclear receptor co-repressor 1 [Culex q	0.868	0.086	0.475	2e-20
405953548	2229	Nuclear receptor corepressor 1 [Crassost	0.912	0.046	0.455	2e-20
195396703	1340	GJ16603 [Drosophila virilis] gi|19414673	0.868	0.073	0.465	5e-20

>gi|328714668|ref|XP_001952203.2| PREDICTED: hypothetical protein LOC100162838 [Acyrthosiphon pisum]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 76/103 (73%), Gaps = 6/103 (5%)

Query: 2   EDRRRHSLSVIPPIICDP--RHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVF 59
           ED++  S +VIPP++ DP  RH  T   ++NNNG V DY+ E  +R    +WTQQE+EVF
Sbjct: 445 EDKKMRSYAVIPPLMLDPHERH-LT---YLNNNGLVLDYKTEYNERKYVNIWTQQEKEVF 500

Query: 60  RDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           +D++I H KNFG IAS+L+++ PSDCV+YYYLSK +E YKR +
Sbjct: 501 KDRFIAHPKNFGAIASYLDKKCPSDCVQYYYLSKPKEEYKRLL 543

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241595414|ref|XP_002404471.1| hypothetical protein IscW_ISCW008711 [Ixodes scapularis] gi|215502354|gb|EEC11848.1| hypothetical protein IscW_ISCW008711 [Ixodes scapularis]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 8/119 (6%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           EDR+  S +V+PPI+ D R      R++N N  V D  ++ ++R    +WT QE+E+FR+
Sbjct: 141 EDRKMRSYAVVPPILLDVRQRRV--RYLNRNSLVEDLSSDYKERQMHNLWTDQEKELFRE 198

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM------LMKETLP 114
           KY+ H KNF +IAS+LER++ +DCV+YYYL+KK ENYK+ +  +N+      ++K  LP
Sbjct: 199 KYLQHAKNFSIIASYLERKSVADCVQYYYLTKKSENYKQLLRKHNVKKRTRAMVKAPLP 257

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011439|ref|XP_002426457.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510569|gb|EEB13719.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +VIPPI+ D R      +++NNNG++ D+  E ++R     WT  E EVF++
Sbjct: 410 EDKKMRSYAVIPPILLDSRQ--RKLKYVNNNGKLEDFSREYKERQLLNFWTTAEHEVFKE 467

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           KY+ H KNFGLIAS+L+R++  DCV+ YY SKK+ENYK+ +
Sbjct: 468 KYLQHPKNFGLIASYLDRKSVCDCVQRYYHSKKQENYKQLL 508

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447120|ref|XP_002071073.1| GK25336 [Drosophila willistoni] gi|194167158|gb|EDW82059.1| GK25336 [Drosophila willistoni]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +VIPP++ D R       + N NGR+ D  A  ++R    MWT  E+E F++
Sbjct: 885 EDKKMRSYAVIPPLLYDARQRHCA--YHNENGRIEDMVAVHQERKALNMWTAGEKETFKE 942

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           KY+ H KNFG IA+ L+R++P DCV YYYLSKK ENYK+ +
Sbjct: 943 KYLQHPKNFGAIAASLDRKSPQDCVRYYYLSKKTENYKQLL 983

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011930|gb|EFA08378.1| hypothetical protein TcasGA2_TC006021 [Tribolium castaneum]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +VIPPI+ D +       + N+NG + D E   + R    +WT  E+EVF++
Sbjct: 349 EDKKMRSYAVIPPILLDSKERKIT--YQNDNGFIEDMEMVYKSRQFLNIWTPSEKEVFKE 406

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           KY+ H KNFG+IASF+ER++ +DCV+YYYLSKK ENYK+ +
Sbjct: 407 KYLQHPKNFGVIASFIERKSVADCVQYYYLSKKTENYKQLL 447

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327276102|ref|XP_003222810.1| PREDICTED: nuclear receptor corepressor 2-like [Anolis carolinensis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 3   DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
           +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+++FR+K
Sbjct: 387 EKQMRQLAVIPPMLFDAEQQRI--KFINMNGLMDDPMKVYKDRQVMNMWSEQEKDIFREK 444

Query: 63  YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           ++ H KNFGLIASFLER+T +DCV YYYL+KK ENYK  +
Sbjct: 445 FMQHPKNFGLIASFLERKTVADCVLYYYLTKKNENYKNLV 484

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443718694|gb|ELU09203.1| hypothetical protein CAPTEDRAFT_73417, partial [Capitella teleta]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++    +VIPP++ D R      RF+NNNG + D +AE ++   + +WT+ E+ +F++
Sbjct: 241 EDKKMRRYAVIPPMMLDARQ--RSLRFLNNNGLMEDSKAEYQEAKLSNIWTEPEKAIFKE 298

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           KY+ H K+F  IA+FLER+T ++CV YYY+SKK+ENYK  +
Sbjct: 299 KYLQHPKSFAFIATFLERKTLTECVHYYYMSKKKENYKELL 339

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|170032616|ref|XP_001844176.1| nuclear receptor co-repressor 1 [Culex quinquefasciatus] gi|167873006|gb|EDS36389.1| nuclear receptor co-repressor 1 [Culex quinquefasciatus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +VIPP++ D R       F N NG + D E E ++R    +WT  E+EVFR+
Sbjct: 448 EDKKMRSYAVIPPLMLDSRQRRL--VFNNENGALIDMETEFKERLNLNVWTVGEKEVFRE 505

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           K++ H KNFG+IA+ L+R+   DCV YYYLSKK ENYK+ +
Sbjct: 506 KFLQHPKNFGMIAASLDRKCAQDCVRYYYLSKKAENYKQLL 546

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405953548|gb|EKC21189.1| Nuclear receptor corepressor 1 [Crassostrea gigas]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +V+PP++ D R      R+ NNNGRV D  AE  +R    +WT QE+ +F++
Sbjct: 477 EDKKMKSYAVVPPMMLDARQRKL--RYTNNNGRVEDPMAEDEERKFINVWTPQEKNIFKE 534

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKETL 113
           KY+ H KNF  IA FLER++ +DCV+YYY +KK ENYK+      +L K+T+
Sbjct: 535 KYLQHPKNFSYIAQFLERKSVADCVQYYYQTKKTENYKQ------LLRKQTV 580

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|195396703|ref|XP_002056968.1| GJ16603 [Drosophila virilis] gi|194146735|gb|EDW62454.1| GJ16603 [Drosophila virilis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 2   EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRD 61
           ED++  S +VIPP++ D R       + N NGR+ D  A   +R    +WT  E+E F++
Sbjct: 723 EDKKMRSYAVIPPLMHDARQRRCA--YHNENGRIEDMVAVHEERKALNLWTAGEKETFKE 780

Query: 62  KYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           KY+ H KNFG IA+ L+R++P DCV YYYLSKK ENYK+ +
Sbjct: 781 KYLQHPKNFGAIAASLDRKSPQDCVRYYYLSKKTENYKQLL 821

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|C9J330	493	NCOR2 "Nuclear receptor corepr	0.859	0.198	0.48	4e-21
UNIPROTKB|E7EVU5	537	NCOR1 "Nuclear receptor corepr	0.885	0.188	0.475	5.2e-21
UNIPROTKB|E7EW50	545	NCOR1 "Nuclear receptor corepr	0.885	0.185	0.475	5.4e-21
UNIPROTKB|J3KS51	546	NCOR1 "Nuclear receptor corepr	0.885	0.184	0.475	5.4e-21
UNIPROTKB|E9PGV6	914	NCOR1 "Nuclear receptor corepr	0.885	0.110	0.475	1.5e-20
UNIPROTKB|J9P1J2	1449	NCOR1 "Uncharacterized protein	0.885	0.069	0.475	3e-20
UNIPROTKB|C9JQE8	1451	NCOR2 "Nuclear receptor corepr	0.859	0.067	0.48	3e-20
UNIPROTKB|F1RFN4	1262	F1RFN4 "Uncharacterized protei	0.859	0.077	0.48	3.2e-20
UNIPROTKB|J9NUC7	1409	NCOR2 "Uncharacterized protein	0.859	0.069	0.48	3.7e-20
UNIPROTKB|F1SDC8	1952	NCOR1 "Uncharacterized protein	0.885	0.051	0.475	4.3e-20

UNIPROTKB|C9J330 NCOR2 "Nuclear receptor corepressor 2" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 4.0e-21, P = 4.0e-21
 Identities = 48/100 (48%), Positives = 68/100 (68%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K
Sbjct:   386 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREK 443

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
             ++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct:   444 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0001012 "RNA polymerase II regulatory region DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0010243 "response to organic nitrogen" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021846 "cell proliferation in forebrain" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045599 "negative regulation of fat cell differentiation" evidence=IEA

GO:0046965 "retinoid X receptor binding" evidence=IEA

GO:0050872 "white fat cell differentiation" evidence=IEA

GO:0060206 "estrous cycle phase" evidence=IEA

UNIPROTKB|E7EVU5 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   403 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 460

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   461 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 503

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E7EW50 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 5.4e-21, P = 5.4e-21
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 494

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J3KS51 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 5.4e-21, P = 5.4e-21
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   403 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 460

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   461 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 503

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E9PGV6 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   285 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 342

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   343 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 385

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P1J2 NCOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 494

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|C9JQE8 NCOR2 "Nuclear receptor corepressor 2" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 48/100 (48%), Positives = 68/100 (68%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K
Sbjct:   386 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREK 443

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
             ++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct:   444 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RFN4 F1RFN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 48/100 (48%), Positives = 68/100 (68%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K
Sbjct:   375 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMDDPMKVYKDRQVMNMWSEQEKETFREK 432

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
             ++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct:   433 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 472

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9NUC7 NCOR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 253 (94.1 bits), Expect = 3.7e-20, P = 3.7e-20
 Identities = 48/100 (48%), Positives = 68/100 (68%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K
Sbjct:   386 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMDDPMKVYKDRQVMNMWSEQEKETFREK 443

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
             ++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK  +
Sbjct:   444 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1SDC8 NCOR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:     3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
             +++   LSVIPP++ D        +FIN NG + D     +DR    +WT  E+E+F+DK
Sbjct:   314 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 371

Query:    63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105
             +I H KNFGLIAS+LER++  DCV YYYL+KK ENYK  +  N
Sbjct:   372 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRN 414

GO:0072368 "regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0072362 "regulation of glycolysis by negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0060318 "definitive erythrocyte differentiation" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0046965 "retinoid X receptor binding" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0035033 "histone deacetylase regulator activity" evidence=IEA

GO:0032922 "circadian regulation of gene expression" evidence=IEA

GO:0031065 "positive regulation of histone deacetylation" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0002361 "CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WU42	NCOR2_MOUSE	No assigned EC number	0.5106	0.8070	0.0372	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-05
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-05
cd11661	46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	2e-04

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 51 WTQQEREVFRDKYIHH-QKNFGLIASFLERRTPSDCVEYYYLSKKR 95
          WT++E E+  +    + + N+  IA  L  RT   C E +    K 
Sbjct: 4  WTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 51 WTQQEREVFRDKYIHH-QKNFGLIASFLERRTPSDCVEYYY 90
          WT++E E+  +    + + N+  IA  L  RTP  C E + 
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.5 bits (88), Expect = 6e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 51 WTQQEREVFRDKYIHH-QKNFGLIASFLERRTPSDCVEYYY 90
          WT +E E+  +    H   N+  IA  L  RT + C   + 
Sbjct: 4  WTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 51 WTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKK 94
          W++ E ++F +    + K+F  I   FL  ++  + VE+YY+ KK
Sbjct: 2  WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG1878|consensus	1672		99.79
KOG4329|consensus	445		99.6
KOG1194|consensus	534		99.48
KOG4167|consensus	907		99.39
KOG3554|consensus	693		99.29
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.24
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.1
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.95
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.47
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.01
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.6
PLN03212	249	Transcription repressor MYB5; Provisional	97.36
KOG1279|consensus	506		97.22
PLN03091	459	hypothetical protein; Provisional	97.08
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	96.89
KOG4468|consensus	782		96.71
KOG0457|consensus	438		96.43
PLN03212	249	Transcription repressor MYB5; Provisional	95.68
KOG1878|consensus	1672		95.65
KOG0048|consensus	238		95.64
PLN03091	459	hypothetical protein; Provisional	94.81
KOG0049|consensus	939		90.7
KOG1194|consensus	534		89.62
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	87.57
KOG0048|consensus	238		86.25
KOG0049|consensus	939		86.04
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	85.92
KOG1079|consensus	739		84.74
KOG0050|consensus	617		83.72
COG5147	512	REB1 Myb superfamily proteins, including transcrip	83.17
KOG2009|consensus	584		81.52

>KOG1878|consensus

Probab=99.79  E-value=9.1e-21  Score=170.03  Aligned_cols=102  Identities=38%  Similarity=0.745  Sum_probs=96.3

Q ss_pred             hhhhhhcccCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCC
Q psy639            2 EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRT   81 (114)
Q Consensus         2 ~~k~~~~~A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks   81 (114)
                      .+++|+++|+||+|+.|.... .+.+|++.|++..||..+|+.++.++.|+++|++.|...|.+|+|+|+.|++++..||
T Consensus       180 ~~k~~r~~a~iP~~~~D~~~~-v~nkle~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkS  258 (1672)
T KOG1878|consen  180 AEKQMRQLAVIPRMLTDSARQ-VRNKLENMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKS  258 (1672)
T ss_pred             chhhhhhhhccCcccccchhh-hhhhhccCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccc
Confidence            478999999999999984442 6789999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhHhhhccccchHHhhhhh
Q psy639           82 PSDCVEYYYLSKKRENYKRAIPT  104 (114)
Q Consensus        82 ~~ecv~~YY~~Kk~~~~k~l~~~  104 (114)
                      +.|||.|||++|++.+|+.+.++
T Consensus       259 v~d~vlfyy~nkkte~yk~~~~r  281 (1672)
T KOG1878|consen  259 VSDCVLFYYLNKKTENYKKLVRR  281 (1672)
T ss_pred             hhhceeeeeecccchhHHhhhcc
Confidence            99999999999999999999993

>KOG4329|consensus

Probab=99.60  E-value=7.1e-16  Score=124.54  Aligned_cols=58  Identities=34%  Similarity=0.529  Sum_probs=53.9

Q ss_pred             chhCCCCCHHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccchHHhhh
Q psy639           45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENYKRAI  102 (114)
Q Consensus        45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~  102 (114)
                      +..+..|||+|+..|+++|..|||||+.| +..|++||+++||+|||+|||+.+|....
T Consensus       274 rd~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~  332 (445)
T KOG4329|consen  274 RDDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFA  332 (445)
T ss_pred             ccccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHh
Confidence            35677899999999999999999999999 77999999999999999999999998765

>KOG1194|consensus

Probab=99.48  E-value=5.1e-14  Score=116.18  Aligned_cols=65  Identities=25%  Similarity=0.421  Sum_probs=61.1

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK  110 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~~k  110 (114)
                      ...+.||.||+-+|.++|.+|||+|++|.+.||+||++++|+|||.|||+..|.+++..+...-|
T Consensus       185 ~~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~h~~~~~  249 (534)
T KOG1194|consen  185 EFPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNRHRNETK  249 (534)
T ss_pred             CCcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999999998876544

>KOG4167|consensus

Probab=99.39  E-value=3.4e-13  Score=116.24  Aligned_cols=53  Identities=32%  Similarity=0.595  Sum_probs=50.1

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchH
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENY   98 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~   98 (114)
                      ...+.||+.|+.+|.++|.+|.|||-.|+.+|++|||+|||+|||.|||...+
T Consensus       617 ~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~  669 (907)
T KOG4167|consen  617 AGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRL  669 (907)
T ss_pred             cCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccc
Confidence            67889999999999999999999999999999999999999999999998544

>KOG3554|consensus

Probab=99.29  E-value=1.6e-12  Score=108.16  Aligned_cols=56  Identities=27%  Similarity=0.560  Sum_probs=52.6

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccchHHhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENYKRA  101 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~~~k~l  101 (114)
                      +.+..||..|..+|++++..|||||..| +.+||+||+.++|+|||+||.+.+|-+.
T Consensus       283 DemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRYvqq  339 (693)
T KOG3554|consen  283 DEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRYVQQ  339 (693)
T ss_pred             hhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHHHHH
Confidence            4778999999999999999999999999 7899999999999999999999999654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.24  E-value=1.5e-11  Score=72.63  Aligned_cols=45  Identities=24%  Similarity=0.326  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhhhcc
Q psy639           49 KMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYYLSK   93 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY~~K   93 (114)
                      ..||++|.++|.+++.+||++ |..||..+| +||..||..+|+.++
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            479999999999999999999 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.10  E-value=2.7e-10  Score=65.15  Aligned_cols=46  Identities=28%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhccc
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk   94 (114)
                      ..||++|..+|..++.+|| ++|..||..+|+||..+|..+|+...+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999 999999999999999999999998654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.95  E-value=2.3e-09  Score=60.48  Aligned_cols=43  Identities=30%  Similarity=0.446  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639           50 MWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        50 ~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      .||++|...|..++..|| ++|..||..+|+||..+|..+|+..
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 9999999999999999999999864

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.47  E-value=3.4e-07  Score=55.76  Aligned_cols=41  Identities=27%  Similarity=0.491  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        51 WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ||++|-++..+.+..||.+|..||..||+||..+|...|+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999998887

...

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.01  E-value=1.6e-05  Score=49.05  Aligned_cols=42  Identities=12%  Similarity=0.194  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-Ch---HHHHhhcC-CC-ChHHHHhHh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NF---GLIASFLE-RR-TPSDCVEYY   89 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F---~~Ia~~lp-~K-s~~ecv~~Y   89 (114)
                      .-.||+||+..|.+++..+|. ++   ..|++.+. ++ |..+|..++
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~   50 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL   50 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence            457999999999999999999 99   99988764 56 999998776

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.60  E-value=9.3e-05  Score=62.14  Aligned_cols=55  Identities=16%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhh
Q psy639           49 KMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIP  103 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~  103 (114)
                      ..||.+|.-+..+++..||.||.+||.++++||..|||..+-.-=-..+|.+-..
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~  334 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD  334 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence            3899999999999999999999999999999999999998866555555544433

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.36  E-value=0.00035  Score=54.51  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ....||+||-++-.+....+|..|..||..||+||-.+|-+.|+..
T Consensus        77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~  122 (249)
T PLN03212         77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH  122 (249)
T ss_pred             ccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999998753

>KOG1279|consensus

Probab=97.22  E-value=0.00047  Score=58.57  Aligned_cols=46  Identities=13%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      .....||++|.-+-.+++..||.||.+||.++++||..|||..+-.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            4566899999999999999999999999999999999999987644

>PLN03091 hypothetical protein; Provisional

Probab=97.08  E-value=0.001  Score=55.71  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ....||+||-++..+.+..+|..|..||..||+||-.+|.+.||.
T Consensus        66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWns  110 (459)
T PLN03091         66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS  110 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHH
Confidence            346899999999999999999999999999999999999988875

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=96.89  E-value=0.001  Score=54.96  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             HHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           41 EMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        41 ~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      .|...+....||-+|.+.|-+++.+.|-||.+||+..|+|+-.++..=|-.
T Consensus       358 t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         358 TFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             cccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence            344457788999999999999999999999999999999999998865544

>KOG4468|consensus

Probab=96.71  E-value=0.0014  Score=56.70  Aligned_cols=46  Identities=30%  Similarity=0.489  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHH----------HhhcCCCChHHHHhHhhhcc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLI----------ASFLERRTPSDCVEYYYLSK   93 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~I----------a~~lp~Ks~~ecv~~YY~~K   93 (114)
                      ...||-+|.+.|..++.++||||..|          -.....||.-++..|||..-
T Consensus        88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~  143 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV  143 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence            45899999999999999999999998          23346788899999999753

>KOG0457|consensus

Probab=96.43  E-value=0.0049  Score=51.43  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhccccchHHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI  102 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~  102 (114)
                      ...||-+|-=++.++..+||= ||.-||.+|++||-.||.++|+..=-...+..+.
T Consensus        72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~  127 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLP  127 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccccc
Confidence            457999999999999999995 9999999999999999999998754444444433

>PLN03212 Transcription repressor MYB5; Provisional

Probab=95.68  E-value=0.021  Score=44.69  Aligned_cols=43  Identities=14%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhc-CCCChHHHHhHhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFL-ERRTPSDCVEYYY   90 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~l-p~Ks~~ecv~~YY   90 (114)
                      ...||+||=++-.+....|| .+|..||..+ ++||-.||.+-|.
T Consensus        25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~   69 (249)
T PLN03212         25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM   69 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence            46799999999999999998 5899999988 5999999999875

>KOG1878|consensus

Probab=95.65  E-value=0.0071  Score=56.65  Aligned_cols=91  Identities=13%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             cCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCC-HHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhH
Q psy639           10 SVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWT-QQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEY   88 (114)
Q Consensus        10 A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WT-eeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~   88 (114)
                      ...|.|+.+..+. ..+.||-+||.+.++...-........|+ -|+.+.|+..+..++|+|..|+++++..+.++ + +
T Consensus       870 lk~~a~v~~~~E~-~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~-~  946 (1672)
T KOG1878|consen  870 LKMPAVVSAGAEG-LMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-Q-Q  946 (1672)
T ss_pred             hcccccccccccc-cccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-c-c
Confidence            3468899888885 67899999999999988777767778898 99999999999999999999999999999999 4 4


Q ss_pred             hhhccccchHHhhhh
Q psy639           89 YYLSKKRENYKRAIP  103 (114)
Q Consensus        89 YY~~Kk~~~~k~l~~  103 (114)
                      ||+-+-..+.-+++.
T Consensus       947 ~~lkp~~s~~~~~Ik  961 (1672)
T KOG1878|consen  947 QQLKPQQSNLMQTIK  961 (1672)
T ss_pred             hhhcchhhhHHHHHH
Confidence            444444444444444

>KOG0048|consensus

Probab=95.64  E-value=0.022  Score=43.66  Aligned_cols=42  Identities=17%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY   89 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y   89 (114)
                      ...||+||-++-.++-..+|--|..||..||+||--++-+|.
T Consensus        62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~W  103 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHW  103 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHH
Confidence            458999999999999999999999999999999999998884

>PLN03091 hypothetical protein; Provisional

Probab=94.81  E-value=0.042  Score=46.20  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcC-CCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLE-RRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp-~Ks~~ecv~~YY~   91 (114)
                      ...||+||=++..+....||. +|..||..++ +||-.||.+-|..
T Consensus        14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~N   59 (459)
T PLN03091         14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN   59 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHh
Confidence            457999999999999999996 7999998875 9999999988763

>KOG0049|consensus

Probab=90.70  E-value=0.36  Score=42.87  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      -..||++|-.+...+...||. +|.+|.+.+|+||.+||..-|-.
T Consensus       360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n  404 (939)
T KOG0049|consen  360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN  404 (939)
T ss_pred             CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence            358999999999999998875 66789999999999999988843

>KOG1194|consensus

Probab=89.62  E-value=0.14  Score=43.39  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRE   96 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~   96 (114)
                      .-.||++|+. -.++|..|+.+|..|+..+.+||.-|+-.||-...++.
T Consensus       470 ~~~wSp~e~s-~ircf~~y~~~fe~ia~l~~tktp~Q~~~fy~~n~k~i  517 (534)
T KOG1194|consen  470 NYGWSPEEKS-AIRCFHWYKDNFELIAELMATKTPEQIKKFYMDNEKLI  517 (534)
T ss_pred             cCCCCCcccc-cccCchhhccchHHHHHHhcCCCHHHHHHHhcCchhhh
Confidence            4579999997 88899999999999999999999999999998887763

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=87.57  E-value=1.2  Score=41.15  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=43.2

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh-ccc
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL-SKK   94 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~-~Kk   94 (114)
                      ..-..||-.+-..|..+...||. ++..||..+++||..|+..|.=. |.+
T Consensus       822 ~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~  872 (1033)
T PLN03142        822 EGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWER  872 (1033)
T ss_pred             cCcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            56678999999999999999998 78999999999999999988743 544

>KOG0048|consensus

Probab=86.25  E-value=1.1  Score=34.38  Aligned_cols=45  Identities=18%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY~~   92 (114)
                      ...||.||=++..+-+..||.. |..|+..+| .|+-.+|..-...+
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~Ny   55 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNY   55 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcc
Confidence            3789999999999999999985 999999999 99999999766544

>KOG0049|consensus

Probab=86.04  E-value=0.97  Score=40.27  Aligned_cols=39  Identities=26%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             hchhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCCh
Q psy639           44 DRAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTP   82 (114)
Q Consensus        44 ~~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~   82 (114)
                      .+...+.||-.|-+.......+||+ +|.+||.+||++|-
T Consensus       408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~  447 (939)
T KOG0049|consen  408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS  447 (939)
T ss_pred             HhhccCceeecchHHHHHHHHHHccchHHHHHHHccccch
Confidence            4467889999999999999999999 89999999999998

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=85.92  E-value=1.1  Score=36.76  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhccccchHHhh
Q psy639           47 QAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLSKKRENYKRA  101 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l  101 (114)
                      ....|+..|--+|.++....|= +|..||.+++.|+-.||..+|+..=-...|.-|
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl  117 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPL  117 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccc
Confidence            4568999999999999999885 999999999999999999999876554444443

>KOG1079|consensus

Probab=84.74  E-value=0.83  Score=40.46  Aligned_cols=58  Identities=21%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             cCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639           30 NNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY   89 (114)
Q Consensus        30 d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y   89 (114)
                      .+|+++.+|+..-+  .....|+.-|...|..+-..||.++..||..|.+||..+|-+|-
T Consensus       393 ~~~~~c~~~~~~~~--~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~~ktC~~v~~~~  450 (739)
T KOG1079|consen  393 STNSICQNPVHGKK--DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLLTKTCRQVYEYE  450 (739)
T ss_pred             cccccccCcccccC--CcccccchhhhHHHHhccccccchhhHHHHHhcchHHHHHHHHh
Confidence            34666666644322  23448999999999999999999999999999999999887765

>KOG0050|consensus

Probab=83.72  E-value=1.2  Score=38.63  Aligned_cols=45  Identities=27%  Similarity=0.476  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...|+..|-++-.-+...||+ +|.+||+.+..||-.+|-.-||-|
T Consensus         7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~   52 (617)
T KOG0050|consen    7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW   52 (617)
T ss_pred             cceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            467999999999999999999 799999999999999999988865

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=83.17  E-value=1.4  Score=37.84  Aligned_cols=45  Identities=31%  Similarity=0.528  Sum_probs=41.7

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ....||++|-++-...-.++|-.|..||..+|.+|..+|++.|-.
T Consensus        71 k~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~  115 (512)
T COG5147          71 KKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN  115 (512)
T ss_pred             ccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHH
Confidence            345799999999999999999999999999999999999999973

>KOG2009|consensus

Probab=81.52  E-value=1.1  Score=38.98  Aligned_cols=47  Identities=17%  Similarity=0.364  Sum_probs=42.3

Q ss_pred             chhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ....+.||-+|.++|..++-..|-+|..|++..|.|+..++..=|-.
T Consensus       406 ~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~  452 (584)
T KOG2009|consen  406 KLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK  452 (584)
T ss_pred             ccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence            36788999999999999999999999999999999999998865543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
4a69_C	94	Structure Of Hdac3 Bound To Corepressor And Inosito		1e-22
1xc5_A	71	Solution Structure Of The Smrt Deacetylase Activati		2e-18
2eqr_A	61	Solution Structure Of The First Sant Domain From Hu		2e-15

>pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 94

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 9  LSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK 68
          L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K++ H K
Sbjct: 6  LAVIPPMLYDADQ--QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPK 63
Query: 69 NFGLIASFLERRTPSDCVEYYYLSKKRENYK 99
          NFGLIASFLER+T ++CV YYYL+KK ENYK
Sbjct: 64 NFGLIASFLERKTVAECVLYYYLTKKNENYK 94

>pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation Domain Length = 71

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 32 NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91
          NG + D     +DR    MW++QE+E FR+K++ H KNFGLIASFLER+T ++CV YYYL
Sbjct: 4  NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 63
Query: 92 SKKRENYK 99
          +KK ENYK
Sbjct: 64 TKKNENYK 71

>pdb|2EQR|A Chain A, Solution Structure Of The First Sant Domain From Human Nuclear Receptor Corepressor 1 Length = 61

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 44 DRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN 97
          DR    +WT  E+E+F+DK+I H KNFGLIAS+LER++  DCV YYYL+KK EN
Sbjct: 8  DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	1e-26
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	5e-21
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	2e-15
2crg_A	70	Metastasis associated protein MTA3; transcription	2e-13
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-12
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	2e-09
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	3e-08
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	5e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	8e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-04

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 93.8 bits (233), Expect = 1e-26
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 7  HSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHH 66
            L+VIPP++ D        +FIN NG + D     +DR    MW++QE+E FR+K++ H
Sbjct: 4  RQLAVIPPMLYDADQ--QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQH 61

Query: 67 QKNFGLIASFLERRTPSDCVEYYYLSKKRENYK 99
           KNFGLIASFLER+T ++CV YYYL+KK ENYK
Sbjct: 62 PKNFGLIASFLERKTVAECVLYYYLTKKNENYK 94

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 78.6 bits (194), Expect = 5e-21
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 40 AEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN 97
              DR    +WT  E+E+F+DK+I H KNFGLIAS+LER++  DCV YYYL+KK EN
Sbjct: 4  GSSGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 64.4 bits (157), Expect = 2e-15
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 43 RDRAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKK 94
                K WT+ E + F      + KNF  I    L  +   + + +YY  KK
Sbjct: 4  GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70

 Score = 59.2 bits (143), Expect = 2e-13
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 45  RAQAKMWTQQEREVFRDKYIHHQKNFGLIA-SFLERRTPSDCVEYYYLSKKRENYKR 100
            +  + W+  E  +F +    + K+F  I   FL  ++ +  +EYYY+ K  + Y +
Sbjct: 5   SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQ 61

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 55.7 bits (134), Expect = 8e-12
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 38  YEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN 97
           + +  R+    + WT++E    +   + H +N+  IA  +  +T S C  +Y+  KKR+N
Sbjct: 6   HHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65

Query: 98  YKR 100
              
Sbjct: 66  LDE 68

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 52.1 bits (123), Expect = 2e-09
 Identities = 9/71 (12%), Positives = 27/71 (38%)

Query: 32  NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91
           +G +  Y      +     WT +E+ +       + ++F  I+  +  ++      ++  
Sbjct: 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176

Query: 92  SKKRENYKRAI 102
            ++R N    +
Sbjct: 177 YRRRFNIDEVL 187

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482

 Score = 49.2 bits (115), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 51  WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKR 100
           WT +++ +F   +  H K F  I   L  ++ +  V++YY  KK      
Sbjct: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTS 241

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482

 Score = 45.7 bits (106), Expect = 5e-07
 Identities = 7/56 (12%), Positives = 22/56 (39%)

Query: 47  QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
               WT +E+ +       + ++F  I+  +  ++      ++   ++R N    +
Sbjct: 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVL 434

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 39.9 bits (93), Expect = 8e-06
 Identities = 7/49 (14%), Positives = 25/49 (51%)

Query: 41 EMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89
          + +  +  + WT+QE  +  +    ++ ++  ++  +  RT  +C+ ++
Sbjct: 11 KSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 51  WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEY---YYLSKKRENYKRAIP 103
           WT +E+E+F        + +  I+  +  RT      Y   Y+ +K +    +  P
Sbjct: 12  WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	100.0
2crg_A	70	Metastasis associated protein MTA3; transcription	99.86
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	99.85
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.84
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.71
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.55
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.33
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.64
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.92
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.91
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.86
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.82
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.75
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.74
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.72
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.6
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.59
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.57
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.5
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.42
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.4
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.37
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.36
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.35
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.31
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.27
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.14
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.12
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.11
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.09
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.07
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.06
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.01
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.99
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.83
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.69
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.6
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.38
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.13
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.69
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.57
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	96.56
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	96.52
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.25
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.26
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	94.25
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.67
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	93.48
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.35
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	84.12

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=100.00  E-value=3.3e-41  Score=226.24  Aligned_cols=93  Identities=52%  Similarity=0.927  Sum_probs=68.5

Q ss_pred             hhhcccCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHH
Q psy639            5 RRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSD   84 (114)
Q Consensus         5 ~~~~~A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~e   84 (114)
                      +||++|+||||++|+++  +++.|+|+||||+||+++++.++.++.||++|+++|+++|.+|||+|++||++||+||++|
T Consensus         2 ~~r~~A~IP~m~~d~~~--~~~~f~d~n~lv~dp~~~~~~r~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~   79 (94)
T 4a69_C            2 AMRQLAVIPPMLYDADQ--QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAE   79 (94)
T ss_dssp             ----------------------CCBCTTSBBSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHH
T ss_pred             cchhcccCCCccCCHHH--HhheecccCCcccCHHHHHhccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Confidence            69999999999999987  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhhccccchHH
Q psy639           85 CVEYYYLSKKRENYK   99 (114)
Q Consensus        85 cv~~YY~~Kk~~~~k   99 (114)
                      ||+|||+|||+.+||
T Consensus        80 cV~~YY~~Kk~~~Yk   94 (94)
T 4a69_C           80 CVLYYYLTKKNENYK   94 (94)
T ss_dssp             HHHHHHHHSCC----
T ss_pred             HHHHHhccccCcCCC
Confidence            999999999999986

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=99.86  E-value=1.7e-22  Score=128.49  Aligned_cols=57  Identities=25%  Similarity=0.512  Sum_probs=53.2

Q ss_pred             chhCCCCCHHHHHHHHHHHhhcCCChHHHHh-hcCCCChHHHHhHhhhccccchHHhh
Q psy639           45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYKRA  101 (114)
Q Consensus        45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~-~lp~Ks~~ecv~~YY~~Kk~~~~k~l  101 (114)
                      ++.++.||++|+++|++++..|||||+.|+. +||+||++|||+|||+|||+.+|++.
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y~q~   62 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQ   62 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchHHHH
Confidence            4678999999999999999999999999998 79999999999999999999998544

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=7.4e-22  Score=123.15  Aligned_cols=52  Identities=27%  Similarity=0.429  Sum_probs=49.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHh-hcCCCChHHHHhHhhhccccchHH
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYK   99 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~-~lp~Ks~~ecv~~YY~~Kk~~~~k   99 (114)
                      .+.||++|+++|++++.+|||||+.|+. +||+||++|||+|||+|||+.+.+
T Consensus         9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~~~   61 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTSGPS   61 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHCSSCCC
T ss_pred             CCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccCCCCCC
Confidence            5789999999999999999999999998 799999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.6e-21  Score=120.78  Aligned_cols=55  Identities=60%  Similarity=1.126  Sum_probs=51.7

Q ss_pred             HhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccch
Q psy639           43 RDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN   97 (114)
Q Consensus        43 ~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~   97 (114)
                      ++++..+.||++|+++|++++.+|||+|+.||.+||+||+.|||+|||+|||+.+
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~~n   61 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN   61 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCCCC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCCCC
Confidence            3567889999999999999999999999999999999999999999999999864

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.71  E-value=5.4e-19  Score=145.95  Aligned_cols=65  Identities=22%  Similarity=0.403  Sum_probs=0.0

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhhhhc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKE  111 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~~k~  111 (114)
                      ..+.||++|+.+|+++|.+|||+|+.|+.+||+||+++||+|||+|||+.+|+++++++.+++||
T Consensus       188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~~yk~l~~~~~rr~kr  252 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKR  252 (482)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccccccHHHHHHHHHhhcCC
Confidence            45789999999999999999999999999999999999999999999999999999998877554

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.55  E-value=4.9e-15  Score=112.35  Aligned_cols=62  Identities=11%  Similarity=0.220  Sum_probs=57.5

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM  107 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~  107 (114)
                      .....||++|+.+|.+++..|||+|..||..|++||..||++|||.||++.++.+++.....
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~ea  192 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEA  192 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999986643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.33  E-value=1.5e-12  Score=107.67  Aligned_cols=61  Identities=11%  Similarity=0.224  Sum_probs=57.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNML  108 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~  108 (114)
                      ...||++|+.+|.+++..|||||..||..|++||+.||+.|||.+|++.++..++......
T Consensus       380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~  440 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE  440 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChHHHHHHHHHh
Confidence            5699999999999999999999999999999999999999999999999999999877443

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.64  E-value=1.5e-11  Score=80.81  Aligned_cols=61  Identities=25%  Similarity=0.523  Sum_probs=55.7

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhh
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM  107 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~  107 (114)
                      ....||+||-++|.+++..||.+|..||..||+||..+|.++|+...+..++..++....+
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~~~~e~~~   75 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKL   75 (89)
Confidence            3568999999999999999999999999999999999999999999999888888877543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.92  E-value=1.7e-09  Score=69.77  Aligned_cols=46  Identities=15%  Similarity=0.379  Sum_probs=42.8

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ....||++|..+|.+++..||.+|..||.+||+||..||.++|...
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999998654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.91  E-value=2e-09  Score=68.71  Aligned_cols=47  Identities=19%  Similarity=0.460  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhhhccc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY~~Kk   94 (114)
                      ...||.+|..+|++++..||++    |..||..||+||..||+.+|-.-.+
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3579999999999999999985    9999999999999999999876533

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.86  E-value=3.5e-09  Score=66.61  Aligned_cols=45  Identities=20%  Similarity=0.353  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...||+||.++|.+++..||.+|..||.+||+||..+|.++|+..
T Consensus         9 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~   53 (72)
T 2cu7_A            9 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY   53 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999998643

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.82  E-value=1.3e-09  Score=69.54  Aligned_cols=46  Identities=22%  Similarity=0.429  Sum_probs=39.3

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      .....||.+|.++|+.++..||++    |.+||..||+||+.||+.+|=+
T Consensus        18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            345689999999999999999996    9999999999999999999844

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.75  E-value=7.9e-09  Score=65.76  Aligned_cols=46  Identities=20%  Similarity=0.403  Sum_probs=41.8

Q ss_pred             hCCCCCHHHHHHHHHHHhhcC----CChHHHHhhcCCCChHHHHhHhhhc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQ----KNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~----K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ....||.+|-.+|++++..||    ..|..||.+||+||..||.+.|...
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L   66 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   66 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence            456899999999999999999    5799999999999999999998653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=7.5e-09  Score=65.35  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcC------CChHHHHhhcCCCChHHHHhHhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQ------KNFGLIASFLERRTPSDCVEYYY   90 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~------K~F~~Ia~~lp~Ks~~ecv~~YY   90 (114)
                      ...||+||.++|.+++..||      .+|..||.+||+||..||.+.|.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~   56 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ   56 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHH
Confidence            46899999999999999999      79999999999999999999983

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.72  E-value=2e-08  Score=61.08  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-.++.+++..|| .+|..||..||+||..||.+.|..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~   52 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK   52 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999 799999999999999999998854

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.69  E-value=3.1e-08  Score=59.97  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC-CCChHHHHhHhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE-RRTPSDCVEYYY   90 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp-~Ks~~ecv~~YY   90 (114)
                      ...||++|-.++.+++..|| .+|..||..|| +||..||.+.|.
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~   53 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL   53 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHH
Confidence            45799999999999999999 89999999999 999999998874

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.64  E-value=6e-08  Score=57.03  Aligned_cols=44  Identities=23%  Similarity=0.470  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-+++.++...||. +|..||..||+||..||.+.|..
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~   47 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK   47 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence            368999999999999999998 99999999999999999998754

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.60  E-value=8.2e-08  Score=56.51  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-+++.++...||. +|..||..||+||-.||.+.|..
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~   47 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence            358999999999999999996 79999999999999999998864

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.59  E-value=1e-07  Score=57.59  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...||+||-+++.++...|| .+|..||..||+||..||.+.|...
T Consensus         8 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence            46899999999999999999 6999999999999999999998653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.57  E-value=6.7e-08  Score=64.07  Aligned_cols=46  Identities=20%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             hCCCCCHHHHHHHHHHHhhcC----CChHHHHhhcCCCChHHHHhHhhhc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQ----KNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~----K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ....||.+|-.+|++++..||    ..|..||..||+||..||.++|-..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l   56 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   56 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence            346899999999999999997    4599999999999999999998654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.50  E-value=1.8e-07  Score=59.22  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK----NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K----~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||.+|.++|++++..||+    .|.+||+.| +||..||+.+|=.
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~   54 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ   54 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHH
Confidence            457999999999999999984    489999998 7999999998743

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=5.4e-07  Score=56.05  Aligned_cols=45  Identities=22%  Similarity=0.525  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...||++|-++..++...|| .+|..||..||+||-.||.+.|...
T Consensus         9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW   54 (70)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            45899999999999999999 7999999999999999999988653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.40  E-value=4.2e-07  Score=60.24  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+..
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~  100 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST  100 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.37  E-value=6.3e-07  Score=56.91  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcccc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKR   95 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~   95 (114)
                      ....||+||-++..+.+.+||..|..||..| +||-.+|.+.|+.-++.
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999 99999999999877664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.36  E-value=8.8e-07  Score=52.30  Aligned_cols=45  Identities=18%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhcc
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLSK   93 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~K   93 (114)
                      ..||+||-++..++...|| .+|..||..+|  +||..||.+-|....
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999 69999999999  999999998876543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.35  E-value=5.6e-07  Score=60.11  Aligned_cols=47  Identities=17%  Similarity=0.431  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk   94 (114)
                      ...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+...+
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r   99 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR   99 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999998876543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=8e-07  Score=54.65  Aligned_cols=43  Identities=23%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-+++.+....+|.+|..||. +++||..||.+.|..
T Consensus         9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~   51 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEF   51 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHH
Confidence            4689999999999999999999999999 888999999998865

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.30  E-value=1e-06  Score=60.36  Aligned_cols=46  Identities=17%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK   93 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K   93 (114)
                      ...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+..-
T Consensus        79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~  124 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM  124 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred             cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999998653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.27  E-value=9.4e-07  Score=60.65  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcccc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKR   95 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~   95 (114)
                      ...||+||-+++.+++..||.+|..||..||+||-.+|.+.|+...+.
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            347999999999999999999999999999999999999999875443

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.14  E-value=4.9e-06  Score=51.53  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhc
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLS   92 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~   92 (114)
                      .....||+||-++..++...|| .+|..||..+|  +||-.||.+.|...
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~   57 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM   57 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence            4467899999999999999999 69999999999  99999999988654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.12  E-value=3.7e-06  Score=57.95  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~   92 (114)
                      ...||+||-+++.+++..||..|..||..||+||-.+|.+.|+..
T Consensus        54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~   98 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS   98 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            357999999999999999999999999999999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.11  E-value=5.2e-06  Score=51.16  Aligned_cols=45  Identities=18%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhc
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLS   92 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~   92 (114)
                      ...||+||-++..++...|| .+|..||..+|  +||-.||.+-|...
T Consensus        11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl   58 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM   58 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999 59999999876  99999999888654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.09  E-value=4.9e-06  Score=58.84  Aligned_cols=46  Identities=17%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK   93 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K   93 (114)
                      ...||++|-.++.+++.+||..|..||..||+||-.+|.+.|+..-
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred             ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999988653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.07  E-value=6e-06  Score=54.58  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-++..+++..||. +|..||..||+||..+|.+.|..
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~   48 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN   48 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence            357999999999999999996 79999999999999999998865

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.06  E-value=6.4e-06  Score=56.43  Aligned_cols=46  Identities=20%  Similarity=0.424  Sum_probs=42.5

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      .....||+||-++..++...||.+|..||..||+||..||.+.|..
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~   54 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN   54 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence            3456899999999999999999999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.01  E-value=9.2e-06  Score=54.10  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           49 KMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ..||+||-++..++...||. +|..||..||+||..||.+.|..
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN   45 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence            47999999999999999996 99999999999999999988754

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.99  E-value=1.2e-05  Score=54.97  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-+...+++..||. +|..||..||+||..+|.+.|..
T Consensus        27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN   71 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence            468999999999999999995 79999999999999999998865

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.83  E-value=1.6e-05  Score=54.72  Aligned_cols=43  Identities=28%  Similarity=0.548  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ..||+||-++..++...|| .+|..||..||+||..||.+.|..
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   46 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN   46 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence            5799999999999999999 789999999999999999998854

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.69  E-value=6.1e-05  Score=53.13  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-++..+++..||. +|..||..||+||-.+|.+.|..
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~  102 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN  102 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence            468999999999999999995 79999999999999999998864

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.60  E-value=9e-05  Score=47.89  Aligned_cols=45  Identities=13%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHhhcCC-ChHHHHhh----cCCCChHHHHhHhhhccc
Q psy639           50 MWTQQEREVFRDKYIHHQK-NFGLIASF----LERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        50 ~WTeeE~~~F~~~~~~~~K-~F~~Ia~~----lp~Ks~~ecv~~YY~~Kk   94 (114)
                      .||+||-+...++...||. +|..|+..    +++||-.+|-+.|-...+
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            6999999999999999998 99999885    899999999998866544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.38  E-value=0.00033  Score=43.10  Aligned_cols=48  Identities=17%  Similarity=0.134  Sum_probs=41.2

Q ss_pred             hCCCCCHHHHHHHHHHHhhcCCChHHHH---hhcCCCChHHHHhHhhhccc
Q psy639           47 QAKMWTQQEREVFRDKYIHHQKNFGLIA---SFLERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia---~~lp~Ks~~ecv~~YY~~Kk   94 (114)
                      ....||+||.+...+++.+||++|..|+   .+++.||--++-.=|..-.|
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            4568999999999999999999999998   58899999999866655443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.13  E-value=0.00048  Score=46.33  Aligned_cols=53  Identities=11%  Similarity=0.055  Sum_probs=45.1

Q ss_pred             HhchhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhcccc
Q psy639           43 RDRAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKKR   95 (114)
Q Consensus        43 ~~~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk~   95 (114)
                      ..+.....||+||-+...++...||. +|..|+..+    ++||-.+|-.-|....+.
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34466789999999999999999998 999998855    899999999988776554

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.69  E-value=0.0028  Score=43.66  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             chhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhccc
Q psy639           45 RAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        45 ~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk   94 (114)
                      +.....||+||-+...++...||. +|..|+..+    ++||-.||-.-|-...+
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            356779999999999999999998 999998763    89999999987766543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.57  E-value=0.003  Score=49.48  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             eecCCCCCcCcHHHHHhc---hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh-cccc
Q psy639           28 FINNNGRVTDYEAEMRDR---AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL-SKKR   95 (114)
Q Consensus        28 f~d~N~lv~dp~~~~~~~---~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~-~Kk~   95 (114)
                      .+|+...+++.....++.   ..-..||-.|-..|..+...||. ++..||..|++||..|+..||=. |++-
T Consensus        87 ~id~~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X           87 KIDEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             HHHTCCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             ccccCCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            344455555555555554   56668999999999999999999 89999999999999999988833 6654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=96.56  E-value=0.0027  Score=43.68  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhccc
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk   94 (114)
                      .....||+||-+...++...||. .|..|+..+    ++||-.||-..|-...+
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            55678999999999999999998 999998874    89999999988766544

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=96.52  E-value=0.0026  Score=48.52  Aligned_cols=44  Identities=14%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC------hHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKN------FGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~------F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||+||-++-.+....+|..      |..||..||+||-.+|.+.|..
T Consensus         8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~   57 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV   57 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence            4589999999999999999885      9999999999999999999865

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.25  E-value=0.02  Score=37.57  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=46.3

Q ss_pred             HHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhc-----CCCChHHHHhHhhhcc
Q psy639           39 EAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFL-----ERRTPSDCVEYYYLSK   93 (114)
Q Consensus        39 ~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~l-----p~Ks~~ecv~~YY~~K   93 (114)
                      -..|...-....||.||-....+....|+-.|..|+...     +.||+.++.+-||.--
T Consensus        21 ~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           21 EQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             HHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            345554445589999999999999999999999999988     5899999998888643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.26  E-value=0.028  Score=40.64  Aligned_cols=46  Identities=20%  Similarity=0.190  Sum_probs=37.2

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcC---CChHHHHh--hcCCCChHHHHhHhhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQ---KNFGLIAS--FLERRTPSDCVEYYYL   91 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~---K~F~~Ia~--~lp~Ks~~ecv~~YY~   91 (114)
                      ..+..||+.|...|..++..||   ..+..|+.  .|..||..++-.||-.
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~   55 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL   55 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            4578899999999999999999   46788864  4889999998887754

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=94.25  E-value=0.082  Score=42.47  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             ecCCCCCcCcHHHHHhc---hhCCCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhh-hcccc
Q psy639           29 INNNGRVTDYEAEMRDR---AQAKMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYY-LSKKR   95 (114)
Q Consensus        29 ~d~N~lv~dp~~~~~~~---~~~~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY-~~Kk~   95 (114)
                      +|+...+++.....+..   ..-..||--|=..|..+...||.+ +..||..|+ +||..|+..|+= .|++-
T Consensus       101 id~~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry  173 (374)
T 2y9y_A          101 VNNSQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI  173 (374)
T ss_dssp             HTCCSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence            34444455555555544   677799999999999999999995 999999998 999999998883 36654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.67  E-value=0.36  Score=31.57  Aligned_cols=54  Identities=24%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             HHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhc-----CCCChHHHHhHhhhc
Q psy639           39 EAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFL-----ERRTPSDCVEYYYLS   92 (114)
Q Consensus        39 ~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~l-----p~Ks~~ecv~~YY~~   92 (114)
                      -..|...-..+.||.||-....+.-..|.--|..|+...     +.||+.|+.+-||.-
T Consensus        21 ~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           21 EQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             HHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            345554444578999999999999999999999998865     379999999988863

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=93.48  E-value=0.17  Score=33.20  Aligned_cols=47  Identities=17%  Similarity=0.360  Sum_probs=39.9

Q ss_pred             chhCCCCCHHHHHHHHHHHhhc---CCChHHHHhhcCCCChHHHHhHhhh
Q psy639           45 RAQAKMWTQQEREVFRDKYIHH---QKNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        45 ~~~~~~WTeeE~~~F~~~~~~~---~K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...+..||.+|=......+.+-   ++-|..||+.|++||..|+-+-+|.
T Consensus        30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~   79 (95)
T 1ug2_A           30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence            3667899999998998888887   5599999999999999999865553

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.35  E-value=0.28  Score=29.98  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhc--CCCChHHHHhH
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKN---FGLIASFL--ERRTPSDCVEY   88 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~---F~~Ia~~l--p~Ks~~ecv~~   88 (114)
                      ...-.||+|.++.|.+++.+.|-+   ...|.+.|  ++.|..++-.+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH   52 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH   52 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH
Confidence            345689999999999999999966   35676664  45666655433

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=84.12  E-value=0.22  Score=31.01  Aligned_cols=41  Identities=20%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCC---ChHHHHhhcCCCChHHHHh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQK---NFGLIASFLERRTPSDCVE   87 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K---~F~~Ia~~lp~Ks~~ecv~   87 (114)
                      ..+..||.||=+.....+.+-|-   -|..||..| +||..|+-+
T Consensus        12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~   55 (70)
T 2lr8_A           12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSE   55 (70)
Confidence            56789999998888888876555   999999999 899998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-15
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	1e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-04

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-15
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 32 NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91
          NG + D     +DR    MW++QE+E FR+K++ H KNFGLIASFLER+T ++CV YYYL
Sbjct: 1  NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 60

Query: 92 SKKRENYK 99
          +KK ENYK
Sbjct: 61 TKKNENYK 68

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (141), Expect = 1e-13
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 51  WTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYKR 100
           W+  E  +F +    + K+F  I   FL  ++ +  +EYYY+ K  + Y +
Sbjct: 4   WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQ 54

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-09
 Identities = 7/52 (13%), Positives = 22/52 (42%)

Query: 51  WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
           WT +E+ +       + ++F  I+  +  ++      ++   ++R N    +
Sbjct: 8   WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVL 59

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 9e-06
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYK 99
          WT +E+E+F        + +  I+  +  RT      Y     K +   
Sbjct: 5  WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.9 bits (75), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
          WT++E  +    +      +  IA  L  RT +    ++  + +
Sbjct: 4  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.87
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.86
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.63
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.28
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.0
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.92
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.88
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.8
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.61
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.59
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.47
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.13
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.97
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.93
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.51
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.2
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.17
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.98
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.11

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.8e-24  Score=132.68  Aligned_cols=68  Identities=57%  Similarity=1.030  Sum_probs=65.7

Q ss_pred             CCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHH
Q psy639           32 NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYK   99 (114)
Q Consensus        32 N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k   99 (114)
                      ||+|+||...++.+...+.||++|.++|.+++.+||++|..||..||+||..||++|||.||++.+|+
T Consensus         1 ng~v~dp~~~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk~~~~K   68 (68)
T d1xc5a1           1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK   68 (68)
T ss_dssp             CCSSCCCCTTTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTTTSCCC
T ss_pred             CCcccchHHHHccccCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHCccCCC
Confidence            89999999999988999999999999999999999999999999999999999999999999998874

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.3e-22  Score=123.07  Aligned_cols=53  Identities=26%  Similarity=0.553  Sum_probs=49.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHh-hcCCCChHHHHhHhhhccccchHHh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYKR  100 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~-~lp~Ks~~ecv~~YY~~Kk~~~~k~  100 (114)
                      ++.||+||+.+|.+++.+|||||+.|+. ++|+||++|||+|||.||++.+|+.
T Consensus         1 ~d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kkt~~y~~   54 (57)
T d2crga1           1 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQ   54 (57)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhCCchHhh
Confidence            4789999999999999999999999986 6899999999999999999998754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=96.71  Aligned_cols=58  Identities=12%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTN  105 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~  105 (114)
                      ...||++|..+|.+++..||++|..||++||+||..||++|||.+++..+...++...
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~~~~~~~~~~~   62 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW   62 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhhcCHHHHHHHh
Confidence            4679999999999999999999999999999999999999999999998888776543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=78.49  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccc
Q psy639           48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk   94 (114)
                      ...||+||..+|.+++..||++|..||.+||+||..+|.++||...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~   48 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFK   48 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999986543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.9e-10  Score=65.22  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=39.6

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639           50 MWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        50 ~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      .||++|-.++.+++..|| ++|..||+.||+||..||.++|+.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~   45 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK   45 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHH
Confidence            599999999999999998 589999999999999999999974

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=9.7e-10  Score=63.01  Aligned_cols=45  Identities=18%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639           49 KMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK   93 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K   93 (114)
                      ..||+||-+++.+.+..||.+|..||.+||+||-.+|.+.||...
T Consensus         2 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            579999999999999999999999999999999999999998754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.88  E-value=1.6e-09  Score=65.28  Aligned_cols=42  Identities=24%  Similarity=0.470  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhh
Q psy639           49 KMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYY   90 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY   90 (114)
                      ..||+||-++|.+++..||++    |..||..||+||..||.+.|-
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~   47 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE   47 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHH
Confidence            479999999999999999996    999999999999999999873

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.2e-09  Score=62.79  Aligned_cols=45  Identities=18%  Similarity=0.439  Sum_probs=41.0

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYY   90 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY   90 (114)
                      .....||++|-.+|.+++..||++    |..||..||+||..||.+.|-
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~   58 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK   58 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHH
Confidence            345689999999999999999985    999999999999999998874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=3.7e-08  Score=56.65  Aligned_cols=43  Identities=23%  Similarity=0.487  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ..||++|-++..+....|| .+|..||..||+||..||.+.|..
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK   45 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHh
Confidence            4799999999999999998 689999999999999999998864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-08  Score=58.93  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhh
Q psy639           49 KMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYY   90 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY   90 (114)
                      ..||++|..+|++++..||++    |.+||+.| +||+.||+..|=
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k   46 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAK   46 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHH
Confidence            479999999999999999987    99999999 799999999883

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.4e-07  Score=54.60  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639           48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ...||++|=++-.+...+|| .+|..||..||+||..||.+.|..
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHh
Confidence            35799999999999999998 689999999999999999998864

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.7e-06  Score=48.96  Aligned_cols=46  Identities=20%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhc--CCCChHHHHhHhhhccc
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFL--ERRTPSDCVEYYYLSKK   94 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~l--p~Ks~~ecv~~YY~~Kk   94 (114)
                      ..||+||-+...+++..|| .+|..||..+  ++||-.||-.-|...+|
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5799999999999999999 5999999875  49999999988866544

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=6.6e-06  Score=47.74  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhh--cCCCChHHHHhHhhhc
Q psy639           49 KMWTQQEREVFRDKYIHHQ-KNFGLIASF--LERRTPSDCVEYYYLS   92 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~--lp~Ks~~ecv~~YY~~   92 (114)
                      ..||+||-+...++...|| ++|..||..  +++||-.||.+-|...
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~   49 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM   49 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHH
Confidence            5799999999999999999 599999987  5699999999888543

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=5.1e-06  Score=52.58  Aligned_cols=43  Identities=14%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC------hHHHHhhcCCCChHHHHhHhhh
Q psy639           49 KMWTQQEREVFRDKYIHHQKN------FGLIASFLERRTPSDCVEYYYL   91 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~------F~~Ia~~lp~Ks~~ecv~~YY~   91 (114)
                      ..||+||=++..+.+..||..      |..||..||+||-.||.+.|..
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~   50 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV   50 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            579999999999999999964      9999999999999999998864

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=7.4e-05  Score=43.08  Aligned_cols=45  Identities=22%  Similarity=0.405  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhh-hccc
Q psy639           50 MWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYY-LSKK   94 (114)
Q Consensus        50 ~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY-~~Kk   94 (114)
                      .||-.|-..|..+...||. |+..||..+.+||..|+-.|+= .|++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            4999999999999999997 9999999999999999666652 3554

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00031  Score=45.00  Aligned_cols=44  Identities=18%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhcCCCChHHHHhHh
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKN---FGLIASFLERRTPSDCVEYY   89 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~---F~~Ia~~lp~Ks~~ecv~~Y   89 (114)
                      ..+..||.||=++..+.+..+|-.   |..||..|++||..+|-+-|
T Consensus        31 ~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf   77 (95)
T d1ug2a_          31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF   77 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH
T ss_pred             CccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHH
Confidence            446789999999999999999966   99999999999999998655

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.00033  Score=41.80  Aligned_cols=43  Identities=14%  Similarity=0.188  Sum_probs=34.0

Q ss_pred             hhCCCCCHHHHHHHHHHHhhcCCCh---HHHHhh--cCCCChHHHHhH
Q psy639           46 AQAKMWTQQEREVFRDKYIHHQKNF---GLIASF--LERRTPSDCVEY   88 (114)
Q Consensus        46 ~~~~~WTeeE~~~F~~~~~~~~K~F---~~Ia~~--lp~Ks~~ecv~~   88 (114)
                      ...-.||+|+++.|.+++.++|.+.   ..|.+.  +++.|..+|-.+
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SH   52 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH   52 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHH
Confidence            3456799999999999999999988   467655  677787777644

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.98  E-value=0.00067  Score=41.89  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHHHHhhcCC-ChHHHHhh----cCCCChHHHHhHhhh
Q psy639           50 MWTQQEREVFRDKYIHHQK-NFGLIASF----LERRTPSDCVEYYYL   91 (114)
Q Consensus        50 ~WTeeE~~~F~~~~~~~~K-~F~~Ia~~----lp~Ks~~ecv~~YY~   91 (114)
                      .||.||-+...++...||- +|..|+..    +++||..||..-|..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn   48 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT   48 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence            6999999999999999995 99999864    789999999987743

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.028  Score=33.67  Aligned_cols=41  Identities=22%  Similarity=0.529  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHh
Q psy639           49 KMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYY   89 (114)
Q Consensus        49 ~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~Y   89 (114)
                      ..|+++|......+|..-||.    |..||..+++||..||-.=|
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky   53 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY   53 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHH
Confidence            589999999999999988874    58899999999999998554