Psyllid ID: psy6452
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y4C4 | 1052 | Malignant fibrous histioc | yes | N/A | 0.505 | 0.285 | 0.263 | 5e-17 | |
| Q5F4C4 | 529 | Leucine-rich repeat prote | yes | N/A | 0.590 | 0.663 | 0.269 | 1e-16 | |
| A6QLV3 | 582 | Leucine-rich repeat prote | no | N/A | 0.602 | 0.615 | 0.274 | 1e-16 | |
| Q5RAV5 | 582 | Leucine-rich repeat prote | no | N/A | 0.602 | 0.615 | 0.274 | 1e-16 | |
| Q9UQ13 | 582 | Leucine-rich repeat prote | no | N/A | 0.602 | 0.615 | 0.274 | 1e-16 | |
| O88520 | 582 | Leucine-rich repeat prote | yes | N/A | 0.601 | 0.613 | 0.275 | 2e-16 | |
| Q6AYI5 | 582 | Leucine-rich repeat prote | yes | N/A | 0.597 | 0.609 | 0.265 | 3e-16 | |
| Q8AVI4 | 577 | Leucine-rich repeat prote | N/A | N/A | 0.590 | 0.608 | 0.266 | 1e-14 | |
| Q1L8Y7 | 561 | Leucine-rich repeat prote | yes | N/A | 0.595 | 0.631 | 0.264 | 1e-14 | |
| Q3V1N1 | 1048 | Malignant fibrous histioc | no | N/A | 0.563 | 0.319 | 0.248 | 4e-14 |
| >sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 152/346 (43%), Gaps = 46/346 (13%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
DI +NL + + V E + L +L VL L N + + LT L D+SH
Sbjct: 64 DIEALNLGNNGLEEVPEGLGSALGSLRVLVLRRNRFARLPPAVAELGHHLTEL---DVSH 120
Query: 295 NKLSELPDFL--NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
N+L+ L + + L++L++SHN ++P Q+ H+ + D+S N +P
Sbjct: 121 NRLTALGAEVVSALRELRKLNLSHNQLPALPA--QLGALAHL----EELDVSFNRLAHLP 174
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTH---TLQTFSMNHNIGMKIPEWFWYQEFLCL 409
L +L LD+ HNQ+ PR L+ ++ N +PE + L
Sbjct: 175 DSLSC-LSRLRTLDVDHNQLTAF--PRQLLQLVALEELDVSSNRLRGLPE-----DISAL 226
Query: 410 KELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLH--MQNTAAVMSNVSQLKYLKNI 467
+ L + +WL F L SL M + + + +Q L+ +
Sbjct: 227 RALKI-----------LWLSGAELGTLPAGFCELASLESLMLDNNGLQALPAQFSCLQRL 275
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKL 527
K LN S+ N+ E P ++L L+ ++EL+LS QL +P I L L L
Sbjct: 276 KMLNLSS-----------NLFEEFPAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTL 324
Query: 528 NISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTF 573
+ +N++ LP+S L L+ L + N++ +LPD F LS + +
Sbjct: 325 WLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRVGLW 370
|
Homo sapiens (taxid: 9606) |
| >sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 182/442 (41%), Gaps = 91/442 (20%)
Query: 188 VSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDIN 247
V+ +VD T K N K +NA I ELN C ++ + ++L+ + I+
Sbjct: 64 VAFSVDNT--IKRPNPATGTRKKSSNAEVIK------ELNKCREE--NSMRLDLAKRSIH 113
Query: 248 FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL-NF 306
+ ++ ++LT LT L L N Q + + L NL+ L LS N L+ LPD L N
Sbjct: 114 MLPSAV-KELTQLTELYLYSNKLQSL----PAEVGCLVNLVTLALSENSLTSLPDSLDNL 168
Query: 307 KVLKELDISHNNFESMPLCL-----------------QVHFYVHIPYKHSQSDISHNNFE 349
K L+ LD+ HN +P + V + K + I N +
Sbjct: 169 KKLRMLDLRHNKLREIPSVVYRLTSLATLYLRFNRITTVEKDIKTLSKLTMLSIRENKIK 228
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPEWFWYQE 405
+P + C L+ LD++HNQ++ H P CT + + HN + +PE
Sbjct: 229 QLPAEIG-ELCNLITLDVAHNQLE--HLPEEIGSCTQ-ITNLDLQHNELLDLPETIGNLS 284
Query: 406 FLC---------------------LKELNMSSTDPFFEHLPIWLLNHM------ELKEN- 437
L L ELN+ + + LP LL+ + L N
Sbjct: 285 SLSRLGLRYNRLSAIPKSLAKCSELDELNLENNN--ISTLPEGLLSSLVKLTSLTLARNC 342
Query: 438 ---------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVL 488
FS + SL+M++ K + LN + N L
Sbjct: 343 FQSYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD-----------NQL 391
Query: 489 WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548
LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP NL+ L+
Sbjct: 392 TSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGIGNLRKLR 451
Query: 549 ILDVSYNKLTMLPDGFVMLSNL 570
LD+ NKL LP+ L +L
Sbjct: 452 ELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Gallus gallus (taxid: 9031) |
| >sp|A6QLV3|SHOC2_BOVIN Leucine-rich repeat protein SHOC-2 OS=Bos taurus GN=SHOC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 186/445 (41%), Gaps = 87/445 (19%)
Query: 183 AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLS 242
A + V+ +VD T K N K +NA E+I ELN C ++ + ++LS
Sbjct: 59 AAQPGVAFSVDNT--IKRPNPAPGTRKKSSNA-----EVIK-ELNKCREE--NSMRLDLS 108
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ I+ + S+ ++LT LT L L N Q + + L NL+ L LS N L+ LPD
Sbjct: 109 KRSIHILPSSI-KELTQLTELYLYSNKLQSL----PAEVGCLVNLMTLALSENSLTSLPD 163
Query: 303 FL-NFKVLKELDISHNNFESMP-----------LCLQVHFYVHIPY------KHSQSDIS 344
L N K L+ LD+ HN +P L L+ + + K S I
Sbjct: 164 SLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPEW 400
N + +P + C L+ LD++HNQ++ H P+ CT + + HN + +P+
Sbjct: 224 ENKIKQLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNELLDLPDT 279
Query: 401 FWYQEFL-------------------CLKELNMSSTDPFFEHLPIWLL------NHMELK 435
L C ++ + LP LL N + L
Sbjct: 280 IGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLA 339
Query: 436 EN----------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
N FS + SL+M++ K + LN +
Sbjct: 340 RNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD----------- 388
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
N L LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP NL+
Sbjct: 389 NQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLR 448
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNL 570
L+ LD+ NKL LP+ L +L
Sbjct: 449 KLRELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Bos taurus (taxid: 9913) |
| >sp|Q5RAV5|SHOC2_PONAB Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 186/445 (41%), Gaps = 87/445 (19%)
Query: 183 AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLS 242
A + V+ +VD T K N K +NA E+I ELN C ++ + ++LS
Sbjct: 59 AAQPGVAFSVDNT--IKRPNPAPGTRKKSSNA-----EVIK-ELNKCREE--NSMRLDLS 108
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ I+ + S+ ++LT LT L L N Q + + L NL+ L LS N L+ LPD
Sbjct: 109 KRSIHILPSSI-KELTQLTELYLYSNKLQSL----PAEVGCLVNLMTLALSENSLTSLPD 163
Query: 303 FL-NFKVLKELDISHNNFESMP-----------LCLQVHFYVHIPY------KHSQSDIS 344
L N K L+ LD+ HN +P L L+ + + K S I
Sbjct: 164 SLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPEW 400
N + +P + C L+ LD++HNQ++ H P+ CT + + HN + +P+
Sbjct: 224 ENKIKQLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNELLDLPDT 279
Query: 401 FWYQEFL-------------------CLKELNMSSTDPFFEHLPIWLL------NHMELK 435
L C ++ + LP LL N + L
Sbjct: 280 IGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLA 339
Query: 436 EN----------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
N FS + SL+M++ K + LN +
Sbjct: 340 RNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD----------- 388
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
N L LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP NL+
Sbjct: 389 NQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLR 448
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNL 570
L+ LD+ NKL LP+ L +L
Sbjct: 449 KLRELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Pongo abelii (taxid: 9601) |
| >sp|Q9UQ13|SHOC2_HUMAN Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 186/445 (41%), Gaps = 87/445 (19%)
Query: 183 AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLS 242
A + V+ +VD T K N K +NA E+I ELN C ++ + ++LS
Sbjct: 59 AAQPGVAFSVDNT--IKRPNPAPGTRKKSSNA-----EVIK-ELNKCREE--NSMRLDLS 108
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ I+ + S+ ++LT LT L L N Q + + L NL+ L LS N L+ LPD
Sbjct: 109 KRSIHILPSSI-KELTQLTELYLYSNKLQSL----PAEVGCLVNLMTLALSENSLTSLPD 163
Query: 303 FL-NFKVLKELDISHNNFESMP-----------LCLQVHFYVHIPY------KHSQSDIS 344
L N K L+ LD+ HN +P L L+ + + K S I
Sbjct: 164 SLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIR 223
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPEW 400
N + +P + C L+ LD++HNQ++ H P+ CT + + HN + +P+
Sbjct: 224 ENKIKQLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNELLDLPDT 279
Query: 401 FWYQEFL-------------------CLKELNMSSTDPFFEHLPIWLL------NHMELK 435
L C ++ + LP LL N + L
Sbjct: 280 IGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLA 339
Query: 436 EN----------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
N FS + SL+M++ K + LN +
Sbjct: 340 RNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD----------- 388
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
N L LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP NL+
Sbjct: 389 NQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLR 448
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNL 570
L+ LD+ NKL LP+ L +L
Sbjct: 449 KLRELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Homo sapiens (taxid: 9606) |
| >sp|O88520|SHOC2_MOUSE Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 187/446 (41%), Gaps = 89/446 (19%)
Query: 183 AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLS 242
A + V+ +VD T K N K +NA E+I ELN C ++ + ++LS
Sbjct: 59 AAQPGVAFSVDNT--IKRPNPAPGTRKKSSNA-----EVIK-ELNKCREE--NSMRLDLS 108
Query: 243 HQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ I+ + S+ ++LT LT L L N Q + + L NL+ L LS N L+ LPD
Sbjct: 109 KRSIHILPPSV-KELTQLTELYLYSNKLQSL----PAEVGCLVNLMTLALSENSLTSLPD 163
Query: 303 FL-NFKVLKELDISHNNFESMP---------LCLQVHF---------YVHIPYKHSQSDI 343
L N K L+ LD+ HN +P L + F ++P K S I
Sbjct: 164 SLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLP-KLSMLSI 222
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPE 399
N + +P + C L+ LD++HNQ++ H P+ CT + + HN + +P+
Sbjct: 223 RENKIKQLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNDLLDLPD 278
Query: 400 WFWYQEFL-------------------CLKELNMSSTDPFFEHLPIWLL------NHMEL 434
L C ++ + LP LL N + L
Sbjct: 279 TIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTL 338
Query: 435 KEN----------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDF 484
N FS + SL+M++ K + LN +
Sbjct: 339 ARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD---------- 388
Query: 485 VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N L LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP NL
Sbjct: 389 -NQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNL 447
Query: 545 KSLKILDVSYNKLTMLPDGFVMLSNL 570
+ L+ LD+ NKL LP+ L +L
Sbjct: 448 RKLRELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Mus musculus (taxid: 10090) |
| >sp|Q6AYI5|SHOC2_RAT Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/448 (26%), Positives = 183/448 (40%), Gaps = 93/448 (20%)
Query: 183 AQEYIVSMNVDRT---PGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTV 239
A + V+ +VD T P L N +VT ELN C ++ + +
Sbjct: 59 AAQPGVAFSVDNTIKRPNPALGTRKKSSNAEVTK-----------ELNKCREE--NSMRL 105
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + I+ + S+ ++LT LT L L N Q + + L NL+ L LS N L+
Sbjct: 106 DLSKRSIHILPPSV-KELTQLTELYLYSNKLQSL----PAEVGCLVNLMTLALSENSLTS 160
Query: 300 LPDFL-NFKVLKELDISHNNFESMP-----------LCLQVHFYVHIPY------KHSQS 341
LPD L N K L+ LD+ HN +P L L+ + + + S
Sbjct: 161 LPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITAVEKDVRNLPRLSTL 220
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKI 397
I N + +P + C L+ LD++HNQ++ H P+ CT + + HN + +
Sbjct: 221 SIRENKIKQLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNELLDL 276
Query: 398 PEWFWYQEFL-------------------CLKELNMSSTDPFFEHLPIWLL------NHM 432
P+ L C ++ + LP LL N +
Sbjct: 277 PDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSL 336
Query: 433 ELKEN----------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ 482
L N FS + SL+M++ K + LN +
Sbjct: 337 TLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD-------- 388
Query: 483 DFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFA 542
N L LPL +S+ EL+L+ QL IPED+ L+ LE L +S+N + KLP
Sbjct: 389 ---NQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLG 445
Query: 543 NLKSLKILDVSYNKLTMLPDGFVMLSNL 570
NL+ L+ LD+ NKL LP+ L +L
Sbjct: 446 NLRKLRELDLEENKLESLPNEIAYLKDL 473
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes. Rattus norvegicus (taxid: 10116) |
| >sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 187/442 (42%), Gaps = 91/442 (20%)
Query: 188 VSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDIN 247
V+ ++D T K N + K +NA E+I EL+ C ++ + ++L+ + I+
Sbjct: 59 VAFSLDNT--IKRANPASGMRKKASNA-----EVIK-ELSKCREE--NSTRLDLAKKSIH 108
Query: 248 FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL-NF 306
+ S+ + LT +T L L N Q + + L NL+ L LS N L+ LPD L N
Sbjct: 109 MLPVSI-KDLTQITELYLYGNKLQSL----PAEVGNLVNLVKLALSENSLTSLPDSLDNL 163
Query: 307 KVLKELDISHNNFESMP-----------LCLQVHFYVHIPY------KHSQSDISHNNFE 349
K L LD+ HN +P L L+ + + K + I N +
Sbjct: 164 KKLCMLDLRHNKLREIPPVVYRLSSLTTLFLRFNRITAVEKDLKMLPKLTMLSIRENKIK 223
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTHTLQTFSMNHNIGMKIPEWFWYQE 405
+P + C L+ LD++HNQ++ H P+ CT + + HN + +P+
Sbjct: 224 HLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQ-ITNLDLQHNELLDLPDTIGNLS 279
Query: 406 FLC---------------------LKELNMSSTDPFFEHLPIWLL------NHMELKEN- 437
L L ELN+ + + LP LL N + L N
Sbjct: 280 SLSRLGLRYNRLSAVPRSLSKCSELDELNLENNN--ISTLPEGLLSSLVKVNSLTLARNC 337
Query: 438 ---------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVL 488
FS++ SL+M++ K + LN + N L
Sbjct: 338 FQSYPVGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD-----------NQL 386
Query: 489 WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548
LPL +S+ EL+L+ QL IPED+ L+ +E L +S+N + KLP NL+ L+
Sbjct: 387 TSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLR 446
Query: 549 ILDVSYNKLTMLPDGFVMLSNL 570
LD+ NKL LP+ L +L
Sbjct: 447 ELDLEENKLESLPNEIAYLKDL 468
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes. Xenopus laevis (taxid: 8355) |
| >sp|Q1L8Y7|SHOC2_DANRE Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 181/439 (41%), Gaps = 85/439 (19%)
Query: 188 VSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDIN 247
V+ +D T K N K +NA E+I ELN C ++ + ++LS + I+
Sbjct: 43 VAFTLDST--IKRPNPPPSTRKKSSNA-----EVIK-ELNKCREE--NSMRLDLSKRSIH 92
Query: 248 FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL-NF 306
+ S+ ++LT LT L L N Q + L+ L+ L LS N L+ LPD L N
Sbjct: 93 LLPSSI-KELTQLTELYLYSNKLQSL----PPEVGCLSGLVTLALSENSLTSLPDSLDNL 147
Query: 307 KVLKELDISHNNFESMPLCLQVHFYVHIPY-----------------KHSQSDISHNNFE 349
K L+ LD+ HN +P + + Y K + I N +
Sbjct: 148 KKLRMLDLRHNKLREIPAVVYRVSSLTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIK 207
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPR----CTH----------------TLQTFSM 389
+P + C L+ LD++HNQ++ H P+ CT T+ +
Sbjct: 208 QLPAEIG-ELCNLITLDVAHNQLE--HLPKEIGNCTQITNLDLQHNDLLDLPETIGNLAS 264
Query: 390 NHNIGMKIPEWFWYQEFL--CLKELNMSSTDPFFEHLPIWLLNHM------ELKEN---- 437
+ +G++ L C + ++ + LP LL+ + L N
Sbjct: 265 INRLGLRYNRLSAIPRSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQS 324
Query: 438 ------GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
FS + SL+M++ K + LN + N L L
Sbjct: 325 YPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKD-----------NQLTSL 373
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551
PL +S+ EL+L+ QL IPEDI L+ LE L +S+N + KLP NL+ L+ LD
Sbjct: 374 PLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRKLRELD 433
Query: 552 VSYNKLTMLPDGFVMLSNL 570
+ NKL LP+ L +L
Sbjct: 434 LEENKLESLPNEIAYLKDL 452
|
Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes. Danio rerio (taxid: 7955) |
| >sp|Q3V1N1|MFHA1_MOUSE Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Mus musculus GN=Mfhas1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 159/383 (41%), Gaps = 48/383 (12%)
Query: 199 KLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLT 258
KL++N A +E D DI +NL + + V E + L
Sbjct: 24 KLRSNLRQLTLSCPGAGGDPLESPDAPQLVLPANIGDIEVLNLGNNGLEDVPEGLGSALG 83
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL--NFKVLKELDISH 316
+L VL L N + + LT L D+SHN+L+ L + + L++L++SH
Sbjct: 84 SLRVLVLRRNRFARLPPAVAELGHHLTEL---DVSHNRLTILGAEVVSALRELRKLNLSH 140
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP---LCLQVHFCKLVKLDISHNQIK 373
N ++P Q+ H+ + D+S N +P CL L LD+ HNQ+
Sbjct: 141 NQLPALPA--QLGALAHL----EELDVSFNRLAHLPDSFSCLN----HLRTLDVDHNQLT 190
Query: 374 IL-HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM 432
+ L+ ++ N +PE + L+ L + +WL
Sbjct: 191 AFPQQLLQLAALEELDVSSNRLRGLPE-----DISALRALKI-----------LWLSGAE 234
Query: 433 ELKENGVFSNLISLH--MQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
F L SL M + + + + L+ +K LN S+ N+ E
Sbjct: 235 LGTLPRGFCELASLESLMLDNNGLQALPDEFSRLQRLKMLNLSS-----------NLFEE 283
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550
P ++L L+ ++EL+LS QL +P I L L L + +N++ LP+S L L+ L
Sbjct: 284 FPAALLPLAGLEELYLSRNQLTSVPSLIAGLGRLLTLWLDNNRIRYLPDSIVELTGLEEL 343
Query: 551 DVSYNKLTMLPDGFVMLSNLTTF 573
+ N++ +LPD F LS + +
Sbjct: 344 VLQGNQIAVLPDNFGQLSRVGLW 366
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| 307203524 | 444 | E3 ubiquitin-protein ligase Hakai [Harpe | 0.126 | 0.168 | 0.728 | 4e-26 | |
| 383851562 | 427 | PREDICTED: E3 ubiquitin-protein ligase H | 0.161 | 0.224 | 0.628 | 6e-26 | |
| 307179314 | 415 | E3 ubiquitin-protein ligase Hakai [Campo | 0.154 | 0.221 | 0.612 | 2e-25 | |
| 328785507 | 359 | PREDICTED: hypothetical protein LOC55234 | 0.127 | 0.211 | 0.710 | 3e-25 | |
| 380029147 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.127 | 0.177 | 0.723 | 3e-25 | |
| 340722230 | 428 | PREDICTED: hypothetical protein LOC10064 | 0.127 | 0.177 | 0.723 | 3e-25 | |
| 350396283 | 407 | PREDICTED: hypothetical protein LOC10074 | 0.127 | 0.186 | 0.723 | 4e-25 | |
| 170060921 | 323 | conserved hypothetical protein [Culex qu | 0.161 | 0.297 | 0.61 | 4e-25 | |
| 345479656 | 491 | PREDICTED: hypothetical protein LOC10011 | 0.109 | 0.132 | 0.815 | 1e-24 | |
| 322794151 | 422 | hypothetical protein SINV_12098 [Solenop | 0.124 | 0.175 | 0.707 | 1e-24 |
| >gi|307203524|gb|EFN82557.1| E3 ubiquitin-protein ligase Hakai [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 67/81 (82%), Gaps = 6/81 (7%)
Query: 35 PDENEEPV---PT---QIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVL 88
P+E E PV P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVL
Sbjct: 60 PEEQETPVAQPPSIEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVL 119
Query: 89 NPIIHTCEKCEKPIMIYGRMI 109
NP+IH C+KC KPI+IYGRMI
Sbjct: 120 NPMIHCCDKCSKPILIYGRMI 140
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383851562|ref|XP_003701301.1| PREDICTED: E3 ubiquitin-protein ligase Hakai-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 13 PLKLTETEEANNGTPEDNTDFGPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPML 72
P ++ ET G PE P + P+ Q D+EADISQLEAPTFTTI RGPP+PML
Sbjct: 44 PQQVEETPTEGVG-PELEEHEAPPTQQPPLEQQFDLEADISQLEAPTFTTINRGPPEPML 102
Query: 73 SLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMI 109
LRWDH V+LIGEKVLNP+IH C+KC KPI+IYGRMI
Sbjct: 103 RLRWDHRVNLIGEKVLNPMIHCCDKCLKPILIYGRMI 139
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307179314|gb|EFN67678.1| E3 ubiquitin-protein ligase Hakai [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 6/98 (6%)
Query: 18 ETEEANNGTPEDNTDFGPDENEEPV---PT---QIDMEADISQLEAPTFTTITRGPPKPM 71
+T + + TP + +E+E P P+ Q D+EADISQLEAPTFTTI RGPP+PM
Sbjct: 42 DTPQQTDDTPAETVGGEQEEHEPPATQQPSLEQQFDLEADISQLEAPTFTTINRGPPEPM 101
Query: 72 LSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMI 109
L LRWDH V+LIGEKVLNP+IH C+KC KPI+IYGRMI
Sbjct: 102 LRLRWDHRVNLIGEKVLNPMIHCCDKCLKPILIYGRMI 139
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328785507|ref|XP_624726.3| PREDICTED: hypothetical protein LOC552347 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 63/76 (82%)
Query: 34 GPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIH 93
P + P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVLNP+IH
Sbjct: 65 APSAQQLPLEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVLNPMIH 124
Query: 94 TCEKCEKPIMIYGRMI 109
C+KC KPI+IYGRM+
Sbjct: 125 CCDKCLKPILIYGRMV 140
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029147|ref|XP_003698243.1| PREDICTED: uncharacterized protein LOC100864501 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 63/76 (82%)
Query: 34 GPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIH 93
P + P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVLNP+IH
Sbjct: 65 APSAQQIPLEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVLNPMIH 124
Query: 94 TCEKCEKPIMIYGRMI 109
C+KC KPI+IYGRMI
Sbjct: 125 CCDKCLKPILIYGRMI 140
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722230|ref|XP_003399511.1| PREDICTED: hypothetical protein LOC100649743 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 63/76 (82%)
Query: 34 GPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIH 93
P + P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVLNP+IH
Sbjct: 64 APPTQQLPLEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVLNPMIH 123
Query: 94 TCEKCEKPIMIYGRMI 109
C+KC KPI+IYGRMI
Sbjct: 124 CCDKCLKPILIYGRMI 139
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350396283|ref|XP_003484499.1| PREDICTED: hypothetical protein LOC100743484 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 63/76 (82%)
Query: 34 GPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIH 93
P + P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVLNP+IH
Sbjct: 64 APPTQQLPLEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVLNPMIH 123
Query: 94 TCEKCEKPIMIYGRMI 109
C+KC KPI+IYGRMI
Sbjct: 124 CCDKCLKPILIYGRMI 139
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170060921|ref|XP_001866016.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167879253|gb|EDS42636.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 70/100 (70%), Gaps = 4/100 (4%)
Query: 13 PLKLTETEEANNGTPEDNTDFGPDEN---EEPVPTQIDMEADISQLEAPTFTTITRGPPK 69
P K E E P D + DE P IDMEADISQLEAPTFTTITRGPP+
Sbjct: 71 PPKSGEGEGVGETAPADK-EMAVDEPTAVASSGPIVIDMEADISQLEAPTFTTITRGPPE 129
Query: 70 PMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMI 109
PML L WDH V+LIGEKVLNP+I+ C++C+KPI+IYGRMI
Sbjct: 130 PMLRLNWDHKVNLIGEKVLNPMIYICDQCDKPILIYGRMI 169
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345479656|ref|XP_001600401.2| PREDICTED: hypothetical protein LOC100115770 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 45 QIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMI 104
Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKVLNP+IH C+KC KPI+I
Sbjct: 105 QFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKVLNPMIHCCDKCLKPILI 164
Query: 105 YGRMI 109
YGRMI
Sbjct: 165 YGRMI 169
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322794151|gb|EFZ17360.1| hypothetical protein SINV_12098 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 66/82 (80%), Gaps = 8/82 (9%)
Query: 36 DENEEPV-----PT---QIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKV 87
DE+E P P+ Q D+EADISQLEAPTFTTI RGPP+PML LRWDH V+LIGEKV
Sbjct: 28 DEHEPPAVVTQQPSLEQQFDLEADISQLEAPTFTTINRGPPEPMLRLRWDHRVNLIGEKV 87
Query: 88 LNPIIHTCEKCEKPIMIYGRMI 109
LNP+IH C+KC KPI+IYGRMI
Sbjct: 88 LNPMIHCCDKCLKPILIYGRMI 109
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| FB|FBgn0032812 | 452 | Hakai "Hakai" [Drosophila mela | 0.116 | 0.152 | 0.742 | 4.8e-23 | |
| DICTYBASE|DDB_G0294094 | 510 | lrrA "leucine-rich repeat-cont | 0.533 | 0.621 | 0.283 | 2.4e-18 | |
| UNIPROTKB|E2R260 | 582 | SHOC2 "Uncharacterized protein | 0.734 | 0.749 | 0.252 | 3.4e-18 | |
| MGI|MGI:3045299 | 853 | Lrrd1 "leucine rich repeats an | 0.535 | 0.372 | 0.280 | 4.4e-18 | |
| UNIPROTKB|A6QLV3 | 582 | SHOC2 "Leucine-rich repeat pro | 0.734 | 0.749 | 0.252 | 4.4e-18 | |
| UNIPROTKB|Q9UQ13 | 582 | SHOC2 "Leucine-rich repeat pro | 0.734 | 0.749 | 0.252 | 4.4e-18 | |
| UNIPROTKB|F2Z5G0 | 582 | SHOC2 "Uncharacterized protein | 0.734 | 0.749 | 0.252 | 4.4e-18 | |
| UNIPROTKB|Q5RAV5 | 582 | SHOC2 "Leucine-rich repeat pro | 0.734 | 0.749 | 0.252 | 4.4e-18 | |
| RGD|1308146 | 582 | Shoc2 "soc-2 (suppressor of cl | 0.734 | 0.749 | 0.247 | 9.5e-18 | |
| MGI|MGI:1927197 | 582 | Shoc2 "soc-2 (suppressor of cl | 0.734 | 0.749 | 0.254 | 1.2e-17 |
| FB|FBgn0032812 Hakai "Hakai" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 52/70 (74%), Positives = 64/70 (91%)
Query: 41 PVPTQ-IDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCE 99
PV +Q IDMEADISQLEAPTFTT++RGPP+PML L+W+H V LIGEKVLNP+IH C++C+
Sbjct: 116 PVMSQTIDMEADISQLEAPTFTTLSRGPPEPMLRLKWNHKVSLIGEKVLNPMIHCCDQCD 175
Query: 100 KPIMIYGRMI 109
KPI++YGRMI
Sbjct: 176 KPILVYGRMI 185
|
|
| DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 97/342 (28%), Positives = 168/342 (49%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
++ + IN++ + L L L LS NN + ++ L NL LDLS N+L
Sbjct: 65 IDFAKNRINYIPPEIGS-LATLKQLFLS-NNKLFYTPITPNIGA-LKNLTRLDLSSNQLD 121
Query: 299 ELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+LP + N + L+ LDIS N +S PL + + + + S N+ +S+P +
Sbjct: 122 DLPVEISNCEALEYLDISDNQLQSFPLEFGKLYNLQV------FNCSKNSLKSLPSEIS- 174
Query: 358 HFCKLVKLDISHNQIKILHKPRCT-HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ KL +L++S+NQ+ L C L T ++ N ++PE + L L++
Sbjct: 175 GWVKLEELNVSNNQLAFLPNQICLLGLLSTLNVGFNKLQQLPEEL--SSMVSLTNLDLKV 232
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKY-----LKNIKYLN 471
P +++P L N +LK + NL H+ ++S + +L LK I Y +
Sbjct: 233 NPPL-QYVP-QLSNLRQLKILSI-RNLQITHLPLGLGLLSELIELDIRDNPQLKEIPY-D 288
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHL--SNVQLNCIPEDIGNLICLEKLNI 529
+ I+ +K F N + +P + L ++Q L L + + ++ IP +IG L+ L+KL +
Sbjct: 289 IATLINLQKLDLFGNNMRIVPREVGNLINLQTLDLRQNKLTIDNIPSEIGKLVNLKKLLL 348
Query: 530 SHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
S+N + LP A++K+LK + S N+L +P LS LT
Sbjct: 349 SNNLLIALPPEIASMKALKEFEASNNQLQAIPTEIGELSGLT 390
|
|
| UNIPROTKB|E2R260 SHOC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 119/472 (25%), Positives = 215/472 (45%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +++K T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L ++ N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALNENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTVN-LSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI ++ LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISALPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| MGI|MGI:3045299 Lrrd1 "leucine rich repeats and death domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 99/353 (28%), Positives = 168/353 (47%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN-FKVL 309
E++S K+ N L L + + + + + +S NL L LS N + ELP + K L
Sbjct: 356 EAISPKIENFKELRLLNLDKNLLQSIPKKISH-CVNLESLSLSDNNIEELPKKIRKLKNL 414
Query: 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFC-KLVKLDIS 368
++L ++ N +M + +HI + S + I+H +P+ ++ C K+ +++++
Sbjct: 415 RQLHVNRNKMITMTEEISHLSNIHI-LEFSGNQITH-----VPI--EIKNCRKITRVELN 466
Query: 369 HNQIKILHKPRCT-HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHL-PI 426
+N I C +L S N N +IP + + L ELN + F +HL +
Sbjct: 467 YNNIMYFPVGLCALQSLDYLSFNGNYISEIPVDMSFSKQLLHLELNRNKLTVFSKHLCSL 526
Query: 427 WLLNHMELKENGVF------SNLISLHMQ--NTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
L +++L +N + S ++SLH+ + S +L LKN++ L DI
Sbjct: 527 TNLEYLDLAKNQIMTIPSCISAMVSLHVLILSDNKFESFPKELCSLKNLRVL----DISE 582
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN---KVY 535
K Q ++PL I L IQ+L+LSN P ++ L LE+LNIS K+
Sbjct: 583 NKLQ-------KIPLEISKLKRIQKLNLSNNIFTNFPVELCQLQTLEELNISQTSGKKLT 635
Query: 536 KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLL 588
+LPE +++ LKIL++S N + +P L +L +FYA L S L
Sbjct: 636 RLPEEVSHMTQLKILNISNNAIKDIPKNIGELRSLVSFYASNNQISSLPSSFL 688
|
|
| UNIPROTKB|A6QLV3 SHOC2 "Leucine-rich repeat protein SHOC-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 119/472 (25%), Positives = 214/472 (45%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +++K T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTVN-LSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI ++ LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| UNIPROTKB|Q9UQ13 SHOC2 "Leucine-rich repeat protein SHOC-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 119/472 (25%), Positives = 214/472 (45%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +++K T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTVN-LSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI ++ LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| UNIPROTKB|F2Z5G0 SHOC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 119/472 (25%), Positives = 214/472 (45%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +++K T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTVN-LSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI ++ LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| UNIPROTKB|Q5RAV5 SHOC2 "Leucine-rich repeat protein SHOC-2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 119/472 (25%), Positives = 214/472 (45%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +++K T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTVN-LSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI ++ LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 117/472 (24%), Positives = 209/472 (44%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +VK T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMD--IAMELIDTELNCCN 230
L + N S+ N+ + L++N + V +D + L +
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITAVE 208
Query: 231 KQYHDI---FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
K ++ T+++ I + + + L NL LD++HN + + + +Q +TNL
Sbjct: 209 KDVRNLPRLSTLSIRENKIKQLPAEIGE-LCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN+L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
| MGI|MGI:1927197 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 120/472 (25%), Positives = 212/472 (44%)
Query: 117 KEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFC-DHELQSIEDDI--LVQL 173
KE+ EE NS D ++ S+ + +VK T + ++LQS+ ++ LV L
Sbjct: 92 KELNKCREE--NSMRLD-LSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNL 148
Query: 174 ECLHIDNNKAQEYIVSM-NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + N S+ N+ + L++N + V +D ++ + N
Sbjct: 149 MTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLD-SLTTLYLRFNRITTV 207
Query: 233 YHDIFTV-NLSHQDI--NFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNL 287
DI + LS I N +++ ++ +L NL LD++HN + + + +Q +TNL
Sbjct: 208 EKDIKNLPKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQ-ITNL 266
Query: 288 IVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
DL HN L +LPD + N L L + +N ++P L + + ++ +N
Sbjct: 267 ---DLQHNDLLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALE------ELNLENN 317
Query: 347 NFESMPLCLQVHFCKLVKLDISHN--QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
N ++P L KL L ++ N Q+ + P T+ + +M HN KIP +
Sbjct: 318 NISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGI-FS 376
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +LNM D LP+ + E + +N ++ ++ + ++S ++ L
Sbjct: 377 RAKVLSKLNMK--DNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVS--LEVLIL 432
Query: 465 KNIKYLNCSNDIDH-RKSQDF---VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520
N + + + RK ++ N L LP I YL +Q+L L+N QL+ +P IG+
Sbjct: 433 SNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLSTLPRGIGH 492
Query: 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLT 571
L L L + N + LPE L++L+ L ++ N L LP + S L+
Sbjct: 493 LTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLS 544
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 594 | |||
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-05 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 2e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-05 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 1e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-04 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 0.001 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 16/236 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I + + L NL LDLS N+ D+ + L+NL LDLS NK+S+
Sbjct: 146 DLSDNKIESLPSPLRN-LPNLKNLDLSFNDLSDLPKL----LSNLSNLNNLDLSGNKISD 200
Query: 300 LPDFLNFKV-LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
LP + L+ELD+S+N+ + L S ++S+N E +P +
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSL------SNLKNLSGLELSNNKLEDLPESIGNL 254
Query: 359 FCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418
L LD+S+NQI + L+ ++ N L LN+ T
Sbjct: 255 SN-LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313
Query: 419 PFFE---HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
E + + N + E L L N + N L N
Sbjct: 314 KALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKN 369
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 422 EHLPIWLLNHMELKENGVFSNLISLHM--QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
+ L ++ ++ EN NL+ L N + SN+S+L L N+ L+ N
Sbjct: 73 DLLSPSGISSLDGSENL--LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN----- 125
Query: 480 KSQDFVNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N + ++P I L S+++EL LS+ ++ +P + NL L+ L++S N + LP
Sbjct: 126 ------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179
Query: 539 ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYW 580
+ +NL +L LD+S NK++ LP +LS L
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISH 316
NL LDLS+N + + + + L NL VLDLS N L+ + F L+ LD+S
Sbjct: 1 NLKSLDLSNNR---LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Query: 317 NNF 319
NN
Sbjct: 58 NNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+++LS+ + + + + L NL VLDLS NN + + L +L LDLS N L
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN---LTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
TNL LDLS+N++++LP N L+ LD+S N +
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 244 QDINFVQESMSQKLTNLTV---LDLSHNNHQ-DINFVQESMSQKLTNLIVLDLSHNKLS- 298
QD +F E + + T L + LD+S+NN Q IN + M L +L L+ NK
Sbjct: 412 QDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS----LQMLSLARNKFFG 466
Query: 299 ELPDFLNFKVLKELDISHNNF-ESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
LPD K L+ LD+S N F ++P L + K S++ +S + + C
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCK-- 523
Query: 358 HFCKLVKLDISHNQI 372
KLV LD+SHNQ+
Sbjct: 524 ---KLVSLDLSHNQL 535
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 459 SQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWE-----------LPLSILYLSSIQELHL 506
S L+ L N+K L+ S ND+ LP I LS+++EL L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216
Query: 507 SNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVM 566
SN + + + NL L L +S+NK+ LPES NL +L+ LD+S N+++ +
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI-SSLGS 275
Query: 567 LSNLTTFY 574
L+NL
Sbjct: 276 LTNLRELD 283
|
Length = 394 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 65/292 (22%), Positives = 107/292 (36%), Gaps = 84/292 (28%)
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP 335
+ + +++T LI L +N+L LP+ L + K L + N S+P L P
Sbjct: 193 IPACIPEQITTLI---LDNNELKSLPENLQGNI-KTLYANSNQLTSIPATL--------P 240
Query: 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGM 395
+ ++S N +P L L LD+ HN+I L + L+ S+ N
Sbjct: 241 DTIQEMELSINRITELPERLP---SALQSLDLFHNKISCLPE-NLPEELRYLSVYDNSIR 296
Query: 396 KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455
+P HLP S + L++Q+ +
Sbjct: 297 TLPA-----------------------HLP---------------SGITHLNVQSNS--- 315
Query: 456 SNVSQLKYLK-----NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ 510
L L +K L N L LP S+ +Q L +S Q
Sbjct: 316 -----LTALPETLPPGLKTLEAGE-----------NALTSLPASLP--PELQVLDVSKNQ 357
Query: 511 LNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
+ +PE + + L++S N + LPE+ +L+I+ S N L LP+
Sbjct: 358 ITVLPETLPP--TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE 405
|
Length = 754 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
+NL SL + N N+K L+ S+ N + LP + L
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-----------NKIESLPSPLRNLP 163
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559
+++ L LS L+ +P+ + NL L L++S NK+ LP L +L+ LD+S N +
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223
Query: 560 LPDGFVMLSNLTTFYAQ 576
L L NL+
Sbjct: 224 LLSSLSNLKNLSGLELS 240
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 61/307 (19%)
Query: 284 LTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISH---NNFE--------SMPLCLQV--- 328
L LI LDLS N LS E+P+ + L+ L+I H NNF S+P LQV
Sbjct: 283 LQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQL 339
Query: 329 ---HFYVHIPY---KHSQS---DISHNNFES-MP--LCLQVHFCKLVKLDIS-HNQIKIL 375
F IP KH+ D+S NN +P LC + KL+ S +I
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI--- 396
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF-FEHLPIWLLNHMEL 434
P+ ++ + L++ + S P F LP L+ +++
Sbjct: 397 --PKSLGACRSL-----------------RRVRLQDNSFSGELPSEFTKLP--LVYFLDI 435
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK-SQDFVNVLWELPL 493
N + + S + M ++++ K+ + S +++ S++ + +P
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA--VPR 493
Query: 494 SILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILD 551
+ LS + +L LS +L+ IP+++ + L L++SHN++ ++P SF+ + L LD
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553
Query: 552 VSYNKLT 558
+S N+L+
Sbjct: 554 LSQNQLS 560
|
Length = 968 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 254 SQKLTNL--TVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311
S +LT++ T+ D IN + E + + L LDL HNK+S LP+ L + L+
Sbjct: 229 SNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLP-EELRY 287
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK------- 364
L + N+ ++P H+P + ++ N+ ++P L L
Sbjct: 288 LSVYDNSIRTLP--------AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339
Query: 365 -----------LDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPE 399
LD+S NQI +L + T+ T ++ N +PE
Sbjct: 340 LPASLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLPE 384
|
Length = 754 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 524 LEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQR 577
L+ L++S+N++ +P +F L +LK+LD+S N LT + P+ F L +L +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
|
Length = 60 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
TNL LDLS+N D+ + L NL LDLS NK+++L N
Sbjct: 1 TNLETLDLSNNQITDLPPLS-----NLPNLETLDLSGNKITDLSPLSN 43
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 491 LPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLK 548
+P I L +Q ++LS + IP +G++ LE L++S+N +PES L SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 549 ILDVSYNKLT 558
IL+++ N L+
Sbjct: 494 ILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 514 IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
IP DI L L+ +N+S N + +P S ++ SL++LD+SYN +P+ L++L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 500 SIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKL 557
+++ L LSN +L IP+ L L+ L++S N + + PE+F+ L SL+ LD+S N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561
LE L++S+N++ LP +NL +L+ LD+S NK+T L
Sbjct: 3 LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
++LS + L+ L L LS N ++ L+ LDLSHN+LS
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSEN---KLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 299 -ELPD-FLNFKVLKELDISHNNFE-SMPLCL-QVHFYVHIPYKHSQSDISHNNFE-SMP 352
++P F VL +LD+S N +P L V V Q +ISHN+ S+P
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV-------QVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 31/89 (34%)
Query: 286 NLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDI 343
NL LDLS+N+L+ +PD F LK LD+S NN S+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA----------------- 43
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQI 372
F +P L LD+S N +
Sbjct: 44 ----FSGLP--------SLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194|consensus | 873 | 100.0 | ||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194|consensus | 873 | 100.0 | ||
| KOG0472|consensus | 565 | 100.0 | ||
| KOG0472|consensus | 565 | 99.97 | ||
| KOG0444|consensus | 1255 | 99.97 | ||
| KOG0444|consensus | 1255 | 99.97 | ||
| KOG0618|consensus | 1081 | 99.97 | ||
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.94 | |
| KOG0618|consensus | 1081 | 99.94 | ||
| KOG4237|consensus | 498 | 99.92 | ||
| KOG4237|consensus | 498 | 99.91 | ||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.86 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.67 | |
| KOG0617|consensus | 264 | 99.64 | ||
| KOG0617|consensus | 264 | 99.63 | ||
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.57 | |
| KOG3207|consensus | 505 | 99.45 | ||
| KOG0532|consensus | 722 | 99.41 | ||
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.34 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.33 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.26 | |
| KOG2932|consensus | 389 | 99.2 | ||
| KOG3207|consensus | 505 | 99.19 | ||
| KOG0531|consensus | 414 | 99.16 | ||
| KOG0532|consensus | 722 | 99.16 | ||
| KOG1259|consensus | 490 | 99.15 | ||
| KOG1909|consensus | 382 | 99.11 | ||
| KOG0531|consensus | 414 | 99.06 | ||
| KOG1259|consensus | 490 | 99.05 | ||
| KOG1909|consensus | 382 | 98.92 | ||
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.92 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.9 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.8 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.71 | |
| KOG4658|consensus | 889 | 98.67 | ||
| KOG4658|consensus | 889 | 98.62 | ||
| KOG1859|consensus | 1096 | 98.61 | ||
| KOG2982|consensus | 418 | 98.48 | ||
| KOG2982|consensus | 418 | 98.47 | ||
| KOG4579|consensus | 177 | 98.44 | ||
| KOG1859|consensus | 1096 | 98.43 | ||
| KOG4579|consensus | 177 | 98.39 | ||
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.31 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.29 | |
| KOG1644|consensus | 233 | 98.15 | ||
| KOG2120|consensus | 419 | 98.11 | ||
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.1 | |
| KOG2120|consensus | 419 | 98.08 | ||
| KOG1644|consensus | 233 | 98.03 | ||
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.01 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.94 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.94 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.73 | |
| KOG2739|consensus | 260 | 97.41 | ||
| KOG3665|consensus | 699 | 97.39 | ||
| KOG2123|consensus | 388 | 97.36 | ||
| KOG3665|consensus | 699 | 97.31 | ||
| KOG2123|consensus | 388 | 97.14 | ||
| KOG2739|consensus | 260 | 97.12 | ||
| KOG4341|consensus | 483 | 96.99 | ||
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.94 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.86 | |
| KOG0473|consensus | 326 | 95.62 | ||
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 95.11 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 95.11 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.86 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.37 | |
| KOG4341|consensus | 483 | 94.15 | ||
| KOG4308|consensus | 478 | 94.14 | ||
| KOG0473|consensus | 326 | 93.93 | ||
| KOG4308|consensus | 478 | 93.27 | ||
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.18 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.18 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 87.02 | |
| KOG3864|consensus | 221 | 86.56 | ||
| KOG4242|consensus | 553 | 84.85 | ||
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 84.05 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 82.5 | |
| KOG1947|consensus | 482 | 81.71 | ||
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 81.4 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=368.21 Aligned_cols=436 Identities=21% Similarity=0.220 Sum_probs=276.2
Q ss_pred hhhhccCccEEecCCCCCc-ccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCc-------ccccccc
Q psy6452 145 NTVKTEALSTRTFCDHELQ-SIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDND-------QNTKVTN 213 (594)
Q Consensus 145 ~~~~~~~L~~l~l~~n~l~-~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~-------~~~~~~~ 213 (594)
...+..+|+.+++++|+++ .+|..+ +++|++|+|++|++++..+...+..+..+.+...... ....-+.
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 3344556666666666664 566554 4566666666666665544444444444433332221 1112234
Q ss_pred cccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcC
Q psy6452 214 AMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293 (594)
Q Consensus 214 ~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls 293 (594)
.++++.|.+.+.++..+.++++|++|+|++|.++...+..+..+++|++|+|++|.+++ .+|. .++.+++|++|+++
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~-~l~~l~~L~~L~L~ 244 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPY-EIGGLTSLNHLDLV 244 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--cCCh-hHhcCCCCCEEECc
Confidence 45555666666666666777777777777777765555556677777777777777654 2333 34667777777777
Q ss_pred CCCCC-CCC-CcCCCcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCC
Q psy6452 294 HNKLS-ELP-DFLNFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHN 370 (594)
Q Consensus 294 ~N~l~-~lp-~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 370 (594)
+|.++ .+| .|.++++|++|++++|.+++ +|..+... .+|+.|++++|.+....+..+.++++|+.|++++|
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL------QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc------cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 77766 444 46677777777777777764 45444322 46777777777776555555566777777777777
Q ss_pred CCCCCCCcc--ccCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccc-------------
Q psy6452 371 QIKILHKPR--CTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMEL------------- 434 (594)
Q Consensus 371 ~l~~l~~~~--~~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~------------- 434 (594)
.+++..+.. ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|+ +.+.+|.++.....+
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNN-LTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCe-eEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 776544332 2346777777777554 445443 566677777777653 455555544321111
Q ss_pred --ccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccc--------------cccccCcccccCC
Q psy6452 435 --KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV--------------NVLWELPLSILYL 498 (594)
Q Consensus 435 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~--------------n~~~~ip~~~~~l 498 (594)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+........ +..+.+|..+ ..
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~ 474 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GS 474 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cc
Confidence 112345677777777777777777777777777777777764432211000 2233444433 34
Q ss_pred CCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEc
Q psy6452 499 SSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYA 575 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L 575 (594)
++|+.|++++|+++ .+|..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 67888888888887 66777888899999999999998 56778889999999999999998 67888999999999999
Q ss_pred cCCCCcccCHhHHhhhhC
Q psy6452 576 QRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 576 ~~N~l~~l~~~~~~~l~~ 593 (594)
++|+++..-+..+..+.+
T Consensus 555 s~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVES 572 (968)
T ss_pred CCCcccccCChhHhcCcc
Confidence 999998544455554443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=336.81 Aligned_cols=344 Identities=20% Similarity=0.240 Sum_probs=217.8
Q ss_pred EEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 154 TRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
.+++++|+|.+|.... +++|+++++.+|.++.++ .+.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP---------~f~------------------------------- 121 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP---------RFG------------------------------- 121 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcc---------ccc-------------------------------
Confidence 4666666666666553 556666666666666655 111
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcC
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKV 308 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~ 308 (594)
....+|+.|+|.+|.|+.+....++.++.|+.||||.|.|+ +++...|..-.++++|+|++|+|+.+. .|.++.+
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 11245677777777777777666666777777777777733 345555555566777777777777554 4666667
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc--CCccE
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT--HTLQT 386 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 386 (594)
|.+|.|+.|+++.+|...+..+ ++|+.|+|..|+|..+....|.++++|+.|.|..|.|..+..+.|. .++++
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L-----~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRL-----PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred heeeecccCcccccCHHHhhhc-----chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 7777777777777766555422 4666667777766666666666666677676766666666666553 35555
Q ss_pred EeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 387 FSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 387 L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
|+|+.|.+..+... .+.++..|+.|++++|.|..+.++.++..++
T Consensus 274 l~L~~N~l~~vn~g-----------------------------------~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 274 LNLETNRLQAVNEG-----------------------------------WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred eecccchhhhhhcc-----------------------------------cccccchhhhhccchhhhheeecchhhhccc
Confidence 55555554444332 2233455666666666666666666777777
Q ss_pred cceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcc-cC---cc
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYK-LP---ES 540 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~-lp---~~ 540 (594)
|+.|+|++| .+..++ .+|..+..|++|+|++|.|+.+.+. |..+++|+.|||++|.|+. |. ..
T Consensus 319 L~~LdLs~N-----------~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 319 LKELDLSSN-----------RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ceeEecccc-----------ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 777777764 333333 3455666777777777777766554 6677777777777777762 21 24
Q ss_pred ccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
|.++++|+.|++.+|+|..||.. |.++++|+.|+|.+|.|.+|.+.+|..|
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 66677777777777777777655 7777777777777777777777777655
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=353.61 Aligned_cols=420 Identities=20% Similarity=0.200 Sum_probs=287.7
Q ss_pred ccEEecCCCCCcccC-hhh--hccCcEEEccCccccccccccccCCCCCccccCCCCccc--------cccccccccccc
Q psy6452 152 LSTRTFCDHELQSIE-DDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN--------TKVTNAMDIAME 220 (594)
Q Consensus 152 L~~l~l~~n~l~~ip-~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~l~~n 220 (594)
++.+++++|.++... ... +++|+.|+|++|++++..+...+..++.++..+++.+.. ..-...++++.|
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n 150 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN 150 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC
Confidence 457788888875443 333 889999999999998755554444445544444333222 233566777888
Q ss_pred ccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCC-C
Q psy6452 221 LIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-E 299 (594)
Q Consensus 221 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~-~ 299 (594)
.+.+.++..+..+++|++|+|++|.+....+..|.++++|++|+|++|.+++ .+| ..+..+++|++|+|++|.++ .
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--QIP-RELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--cCC-hHHcCcCCccEEECcCCccCCc
Confidence 8888888888889999999999998886666667889999999999998765 244 44578899999999999887 5
Q ss_pred CC-CcCCCcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC
Q psy6452 300 LP-DFLNFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK 377 (594)
Q Consensus 300 lp-~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 377 (594)
+| .+.++++|++|++++|.+++ +|..+... .+|+.|++++|.+.+..+..+.++++|++|++++|.+++..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL------KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCC------CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 66 57888999999999998885 66554332 688999999999886555555688899999999998876544
Q ss_pred c--cccCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccc---------------ccc
Q psy6452 378 P--RCTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE---------------NGV 439 (594)
Q Consensus 378 ~--~~~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~---------------~~~ 439 (594)
. ...++|+.|++++|.+. .+|..+ ..+++|+.|++++|. +.+.+|..+.....+.. +..
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 3 23468999999998665 445444 688999999999875 66777765533211100 112
Q ss_pred cCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccc
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDI 518 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 518 (594)
+.+|+.|++++|.+.+..+..+..+++|+.|++++| +..+.+|..+..+++|+.|++++|.++ .+|..+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n----------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN----------SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC----------EeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 233444444444444444444444444555555444 344455666666666666666666666 344445
Q ss_pred cCCCCCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 519 GNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 519 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
..+++|+.|+|++|++. .+|..+ ..++|+.|++++|+++ .+|..+..+++|+.|+|++|.++...+..+..+.+|
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 66677777777777766 334433 4467888888888887 567778888888888888888886666666555543
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=319.77 Aligned_cols=351 Identities=21% Similarity=0.274 Sum_probs=255.9
Q ss_pred eeceecccccccch-hhhccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCccc
Q psy6452 132 QDTITNNSVEMDEN-TVKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN 208 (594)
Q Consensus 132 ~~~~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (594)
.+...|....+... ...+.+|+...+..|.++.||... ..+|+.|+|.+|.|+.+..+ .+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-------~L---------- 145 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-------EL---------- 145 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-------HH----------
Confidence 33334444444444 455679999999999999999887 56699999999999987622 11
Q ss_pred ccccccccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCC
Q psy6452 209 TKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI 288 (594)
Q Consensus 209 ~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~ 288 (594)
.-++.|++||||.|.|+.++...|..-.++++|+|++|+|+. +..+.|..+.+|.
T Consensus 146 ----------------------~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~---l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 146 ----------------------SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT---LETGHFDSLNSLL 200 (873)
T ss_pred ----------------------HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc---cccccccccchhe
Confidence 236889999999999999999999888899999999999666 5678899999999
Q ss_pred EEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEE
Q psy6452 289 VLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLD 366 (594)
Q Consensus 289 ~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 366 (594)
.|.|+.|+|+.+| .|.++++|+.|+|..|+|..+..-.+ +-.++|+.|.|..|.+..+..++|.++.++++|+
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF-----qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF-----QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh-----cCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 9999999999999 58889999999999999986543333 3337999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCc
Q psy6452 367 ISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLI 444 (594)
Q Consensus 367 Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~ 444 (594)
|+.|+++.+..+.. ..+|+.|++++|.|..|....| .-+++|++|+|++
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~---------------------------- 326 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSS---------------------------- 326 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchh-hhcccceeEeccc----------------------------
Confidence 99999998876643 3588999999998887766554 3445555555555
Q ss_pred EEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-ccc---ccccC
Q psy6452 445 SLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIP---EDIGN 520 (594)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip---~~~~~ 520 (594)
|+++...++.|..+..|+.|+|+.|.+....+ ..|..+++|+.|||++|.|+ .|. ..|.+
T Consensus 327 ------N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 327 ------NRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred ------cccccCChhHHHHHHHhhhhcccccchHHHHh----------hHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 44555555555555566666666542222111 13344556666666666665 221 12556
Q ss_pred CCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCcc-CcccccCCCCcEEEc
Q psy6452 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFYA 575 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L 575 (594)
+++|+.|+|.+|+|++||. +|.++.+|++|||.+|.|.+| |.+|..+ .|++|-+
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 6666666666666666655 666666666666666666655 4446555 5665554
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=297.93 Aligned_cols=416 Identities=21% Similarity=0.255 Sum_probs=279.7
Q ss_pred cccccchhhhccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccc-cccCCCCCccccCCCCccc-ccccc-
Q psy6452 139 SVEMDENTVKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVS-MNVDRTPGFKLQNNDNDQN-TKVTN- 213 (594)
Q Consensus 139 ~~~~~~~~~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~-~~~~~l~~l~~~~~~~~~~-~~~~~- 213 (594)
...+.........+..+.+.+|++..+|+.+ +..++.|+.++|+++.+++. .....+..+.+++...... ..+..
T Consensus 57 l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 57 LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHH
Confidence 3444444444555666666666666666666 66666666666666665543 2222333333322221111 01111
Q ss_pred ----cccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCE
Q psy6452 214 ----AMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289 (594)
Q Consensus 214 ----~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~ 289 (594)
.++...|.+ ..+|..+..+.++..+++.+|++..+++.... |+.|++||...|.++ .+|+.+ +++.+|+.
T Consensus 137 ~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~---tlP~~l-g~l~~L~~ 210 (565)
T KOG0472|consen 137 LDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE---TLPPEL-GGLESLEL 210 (565)
T ss_pred hhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh---cCChhh-cchhhhHH
Confidence 111222333 34566666778888888888888888888765 888888888888844 467766 68888888
Q ss_pred EEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC
Q psy6452 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369 (594)
Q Consensus 290 L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 369 (594)
|+|.+|+|..+|+|.++..|++|+++.|.|..+|+.....+ .++..||+..|+++++|..+. -+.+|+.||+|+
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L-----~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSN 284 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL-----NSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSN 284 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc-----ccceeeeccccccccCchHHH-HhhhhhhhcccC
Confidence 88999988888888888888888888888888887765433 678888888888888887774 677788888888
Q ss_pred CCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcc----------------------------------------cCcc
Q psy6452 370 NQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQE----------------------------------------FLCL 409 (594)
Q Consensus 370 N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~----------------------------------------~~~L 409 (594)
|.|++++..-..-.|+.|.+.+|.+.+|-..+..+. ..+.
T Consensus 285 N~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 285 NDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred CccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 888877655332266666667766555544321000 0112
Q ss_pred cEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCcc-----------------------ccccCccccccCCC
Q psy6452 410 KELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-----------------------AVMSNVSQLKYLKN 466 (594)
Q Consensus 410 ~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~-----------------------l~~~~~~~~~~l~~ 466 (594)
+.|++++- ....+|.-++.... -.-.+..+++.|+ ..+..+..++.+++
T Consensus 365 kiL~~s~~--qlt~VPdEVfea~~------~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 365 KILDVSDK--QLTLVPDEVFEAAK------SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhccccc--ccccCCHHHHHHhh------hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 22222221 12223332222111 0112233333332 23344566777888
Q ss_pred cceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc-cccCCC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLK 545 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~ 545 (594)
|..|++++ |++-.+|..++.+..|+.|+++.|++..+|..+..+..|+.+-.++|++.++++ .+.+|.
T Consensus 437 Lt~L~L~N-----------N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 437 LTFLDLSN-----------NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred ceeeeccc-----------chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 88888888 678888888888888999999999888888888888888888888899998876 489999
Q ss_pred CCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHh
Q psy6452 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 546 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+|..|||.+|.|..||..++++++|++|.++||+|+ .|..
T Consensus 506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred hcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 999999999999999999999999999999999999 6654
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-35 Score=284.85 Aligned_cols=423 Identities=21% Similarity=0.280 Sum_probs=318.5
Q ss_pred hhccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccc-cccCCCCCccccCCCCcccccc------cccccc
Q psy6452 147 VKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVS-MNVDRTPGFKLQNNDNDQNTKV------TNAMDI 217 (594)
Q Consensus 147 ~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~-~~~~~l~~l~~~~~~~~~~~~~------~~~~~l 217 (594)
+....+..+.+++|.++.+-++. +..|.+|++.+|++...++. .....+..+...+......... ..-++.
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 33445668889999999999888 88999999999999998865 3333344443333322222110 111222
Q ss_pred cccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 218 AMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 218 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
+.|.. ..++..+..+..+..++..+|+|+.+|+++ ..+.+|..|++.+|++.. +|+.... ++.|++||..+|-+
T Consensus 122 s~n~~-~el~~~i~~~~~l~dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~---l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 122 SSNEL-KELPDSIGRLLDLEDLDATNNQISSLPEDM-VNLSKLSKLDLEGNKLKA---LPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred cccce-eecCchHHHHhhhhhhhccccccccCchHH-HHHHHHHHhhccccchhh---CCHHHHH-HHHHHhcccchhhh
Confidence 22222 234555666777888888888888888776 477788888888888544 5666654 88899999999988
Q ss_pred CCCC-CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 298 SELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 298 ~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
..+| +++++.+|..|+|.+|++..+|+. .....|++|+++.|+|+.+|+....+++++.+||+.+|+++.++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef-------~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEF-------PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCC-------CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 8888 688889999999999999988832 22257899999999999999999999999999999999999999
Q ss_pred Ccccc-CCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhh------------------------
Q psy6452 377 KPRCT-HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH------------------------ 431 (594)
Q Consensus 377 ~~~~~-~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~------------------------ 431 (594)
...+. .+|.+||+++|.++.+|... +++ .|+.|.+-||. ...+-..+.+.
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sL--gnl-hL~~L~leGNP--lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSL--GNL-HLKFLALEGNP--LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCccc--ccc-eeeehhhcCCc--hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 88665 57999999999999999987 566 89999999875 11111111100
Q ss_pred --c-------ccccccccCCCcEEEcCCccccccCccccccCC--CcceEeCCCCcCcccccccc-------------cc
Q psy6452 432 --M-------ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK--NIKYLNCSNDIDHRKSQDFV-------------NV 487 (594)
Q Consensus 432 --~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~~~~~~~~~~-------------n~ 487 (594)
. .+.....+.+.+.|++++-+++.+..+.|..-. -.+..+++.|.+.....++. |.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 0 001112344677788888888777666664332 35677777775543322211 56
Q ss_pred cccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcc-ccc
Q psy6452 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVM 566 (594)
Q Consensus 488 ~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~ 566 (594)
++-+|..++.+++|..|+|++|-+.++|..++.+..|+.|++|.|++..+|..+..+..|+.+-.++|++..++.. +..
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 6777888889999999999999999999999999999999999999999999888888899999999999999766 999
Q ss_pred CCCCcEEEccCCCCcccCHhH
Q psy6452 567 LSNLTTFYAQRKYWMFLTISL 587 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~~~~ 587 (594)
+.+|++|||.+|.+.+||+.+
T Consensus 504 m~nL~tLDL~nNdlq~IPp~L 524 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPIL 524 (565)
T ss_pred hhhcceeccCCCchhhCChhh
Confidence 999999999999999999865
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-34 Score=291.13 Aligned_cols=321 Identities=24% Similarity=0.373 Sum_probs=242.3
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVL 309 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L 309 (594)
..+.+|++|.+++|++..+.... +.++.|+.+++.+|++.. ..+|+.+| .+..|+.||||+|+++.+| .+...+++
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKn-sGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKN-SGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhcccccc-CCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence 34567777777777777776553 677777777777777754 24677776 6777777777777777777 46677777
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc--cccCCccEE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTF 387 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~~~L~~L 387 (594)
-.|+||+|+|..||..++..+ ..|-.||||+|++..+|+.+ ..+..|++|+|++|.+...... ..+.+|++|
T Consensus 129 iVLNLS~N~IetIPn~lfinL-----tDLLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINL-----TDLLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred EEEEcccCccccCCchHHHhh-----HhHhhhccccchhhhcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 777777777777776665433 45667777777777777776 3677777777877776543322 233467777
Q ss_pred eCCCC--CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 388 SMNHN--IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 388 ~L~~N--~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
.+++. .+..+|..+ ..+.+|..+|+|.|+ .-.+|.++.+ +.+|+.|+|++|.++.... ..+.-.
T Consensus 203 hms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~--Lp~vPecly~---------l~~LrrLNLS~N~iteL~~-~~~~W~ 268 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSL--DDLHNLRDVDLSENN--LPIVPECLYK---------LRNLRRLNLSGNKITELNM-TEGEWE 268 (1255)
T ss_pred hcccccchhhcCCCch--hhhhhhhhccccccC--CCcchHHHhh---------hhhhheeccCcCceeeeec-cHHHHh
Confidence 77765 455667665 577788888888775 5556665533 4578888888888876532 233446
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--cccccccCCCCCcEEEccCCCCcccCccccC
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN--CIPEDIGNLICLEKLNISHNKVYKLPESFAN 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 543 (594)
+|+.|++|. |.+..+|.++..+++|+.|.+.+|+++ .||+.++.+.+|+.+..++|.+.-+|+.+..
T Consensus 269 ~lEtLNlSr-----------NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 269 NLETLNLSR-----------NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred hhhhhcccc-----------chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 778888888 578889999999999999999999887 8999999999999999999999999999999
Q ss_pred CCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCH
Q psy6452 544 LKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+..|+.|.|+.|++-++|+++.-++.|+.|++..|+=-..|+
T Consensus 338 C~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999999999999999999998555554
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-33 Score=288.50 Aligned_cols=328 Identities=24% Similarity=0.362 Sum_probs=280.5
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCC--CCC-Cc
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS--ELP-DF 303 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp-~~ 303 (594)
|.....++.++.|.|...++..+|... +.+.+|++|.+++|++..+ . +-++.++.|+.+++.+|++. +|| ++
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~v---h-GELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISV---H-GELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhh---h-hhhccchhhHHHhhhccccccCCCCchh
Confidence 334456889999999999999999875 8999999999999997654 2 33478999999999999998 788 68
Q ss_pred CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc-cccC
Q psy6452 304 LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTH 382 (594)
Q Consensus 304 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~ 382 (594)
..+..|..||||+|+++.+|..+... .++-.|+||+|+|..||...|.+++-|-+||||+|++..+++. .-..
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~A------Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYA------KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhh------cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 89999999999999999999877543 5788999999999999999999999999999999999998876 4456
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
.|++|.|++|.+..+.-.- ...+.+|+.|.+++.+.-...+|.++ ..+.+|..++++.|.+... |..+-
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Ptsl---------d~l~NL~dvDlS~N~Lp~v-Pecly 242 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTSL---------DDLHNLRDVDLSENNLPIV-PECLY 242 (1255)
T ss_pred hhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCch---------hhhhhhhhccccccCCCcc-hHHHh
Confidence 8999999999443221111 12466888899998776677777654 4567899999999988654 67777
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc--ccCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY--KLPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~--~lp~~ 540 (594)
.+.+|+.|+||+| .++++..+.....+|++|+||+|+++.+|+.+..++.|+.|.+.+|+++ .||..
T Consensus 243 ~l~~LrrLNLS~N-----------~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-----------KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred hhhhhheeccCcC-----------ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 8999999999994 5667766777788999999999999999999999999999999999988 89999
Q ss_pred ccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhH
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISL 587 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~ 587 (594)
++.+.+|+++..++|.+.-+|+++..+..|+.|.|+.|.+-++|..+
T Consensus 312 IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh
Confidence 99999999999999999999999999999999999999999998765
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-32 Score=290.90 Aligned_cols=420 Identities=24% Similarity=0.302 Sum_probs=324.9
Q ss_pred eeeceecccccccchhhhccCccEEecCCCCCcccChhh--hccCcEEEccCcccccccccccc-CCCCCccccCCCC--
Q psy6452 131 TQDTITNNSVEMDENTVKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVSMNV-DRTPGFKLQNNDN-- 205 (594)
Q Consensus 131 ~~~~~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~-~~l~~l~~~~~~~-- 205 (594)
...+..|.....|.+.....+|.++.|.+|+++.+|..+ +.+|++||+|.|.+..++..... .....+...++..
T Consensus 72 ~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 72 QLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred hcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhh
Confidence 344567777888888888899999999999999999998 99999999999999988754211 0000011110100
Q ss_pred -cccccccccccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcC
Q psy6452 206 -DQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL 284 (594)
Q Consensus 206 -~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l 284 (594)
..... ..-.++..+.+.+.+......+.+ .|+|++|.+..+. ...+.+|+.|....|++..+. -..
T Consensus 152 ~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~-------~~g 218 (1081)
T KOG0618|consen 152 RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE-------ISG 218 (1081)
T ss_pred hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE-------ecC
Confidence 00000 222334444444444444444444 6999999998333 467899999999999976642 256
Q ss_pred CCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcE
Q psy6452 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK 364 (594)
Q Consensus 285 ~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 364 (594)
++|+.|+.++|.+..+..-..-.+|+++++++|+++.+|.|+... .+|+.+++.+|+++.++...+ ...+|+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~------~nle~l~~n~N~l~~lp~ri~-~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGAC------ANLEALNANHNRLVALPLRIS-RITSLVS 291 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhc------ccceEecccchhHHhhHHHHh-hhhhHHH
Confidence 889999999999985543334578999999999999999777654 689999999999999998887 7889999
Q ss_pred EECCCCCCCCCCCccc-cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCC
Q psy6452 365 LDISHNQIKILHKPRC-THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNL 443 (594)
Q Consensus 365 L~Ls~N~l~~l~~~~~-~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L 443 (594)
|++..|.++.+++..- ...|++|+|..|.+..+|..+...-...+..|+.+.|+ ...+| ...-..++.|
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~--l~~lp--------~~~e~~~~~L 361 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK--LSTLP--------SYEENNHAAL 361 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc--ccccc--------cccchhhHHH
Confidence 9999999999886644 67899999999999999997632233347777777764 22223 1122346689
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCccc-ccCCCCCcEEeCccccCccccccccCCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
+.|++.+|.++......+.+++.|++|+|++ |.++.+|.+ +.++..|++|+||+|+++.+|+.+..+.
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-----------NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSY-----------NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG 430 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecc-----------cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence 9999999999999999999999999999999 578888854 5689999999999999999999999999
Q ss_pred CCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCc--cCcccccCCCCcEEEccCCCCcccCHhHHhhhhC
Q psy6452 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 593 (594)
.|++|...+|+|..+| .+..++.|+++|||.|+|+. +|..... ++|++||++||....++...|.-++.
T Consensus 431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhh
Confidence 9999999999999999 68999999999999999994 4554333 89999999999988888887765543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=253.87 Aligned_cols=262 Identities=23% Similarity=0.255 Sum_probs=170.5
Q ss_pred ccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCcc
Q psy6452 152 LSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNK 231 (594)
Q Consensus 152 L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~ 231 (594)
-..++++++.++.||..+..+|+.|++++|+|+.++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~------------------------------------------- 239 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------------------------------------------- 239 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC-------------------------------------------
Confidence 4467777888888887777778888888888886651
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccE
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~ 311 (594)
.+++|++|+|++|+|+.+|. ..++|+.|++++|.++.+ |. ...+|+.|++++|+++.+|.. .++|++
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~L---p~----lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~ 306 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL---PA----LPSGLCKLWIFGNQLTSLPVL--PPGLQE 306 (788)
T ss_pred CCCCCcEEEecCCccCcccC----cccccceeeccCCchhhh---hh----chhhcCEEECcCCcccccccc--ccccce
Confidence 13567888888888887764 236777888888875543 32 225577778888887777753 467778
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|++++|+|+++|. .|.+|+.|++++|+++.+|.. ..+|+.|+|++|+|+.++. ...+|+.|++++
T Consensus 307 LdLS~N~L~~Lp~---------lp~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~ 371 (788)
T PRK15387 307 LSVSDNQLASLPA---------LPSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLASLPT--LPSELYKLWAYN 371 (788)
T ss_pred eECCCCccccCCC---------CcccccccccccCcccccccc----ccccceEecCCCccCCCCC--CCcccceehhhc
Confidence 8888887777663 234666777777777766631 2356677777777666542 223444444444
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
|.+..+|.. ..+|+.|+
T Consensus 372 N~L~~LP~l---------------------------------------------------------------~~~L~~Ld 388 (788)
T PRK15387 372 NRLTSLPAL---------------------------------------------------------------PSGLKELI 388 (788)
T ss_pred cccccCccc---------------------------------------------------------------ccccceEE
Confidence 433333321 12234444
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 551 (594)
+++| .+..+|.. .++|+.|++++|.|+.+|... .+|+.|+|++|+|+.||..+..+++|+.|+
T Consensus 389 Ls~N-----------~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 389 VSGN-----------RLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred ecCC-----------cccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 4442 22233322 246888888888888887643 467788888888888888888888888999
Q ss_pred CcCCCCC-ccCccc
Q psy6452 552 VSYNKLT-MLPDGF 564 (594)
Q Consensus 552 Ls~N~l~-~ip~~l 564 (594)
|++|+|+ .++..+
T Consensus 452 Ls~N~Ls~~~~~~L 465 (788)
T PRK15387 452 LEGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCCchHHHHH
Confidence 9999888 334434
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-29 Score=267.50 Aligned_cols=393 Identities=22% Similarity=0.281 Sum_probs=283.2
Q ss_pred CccEEecCCCCCcccChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNC 228 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~ 228 (594)
.|..+++++|++...|..+ +++|+.|+++.|.|..++ ....+++.++..++.... -..+|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp--~s~~~~~~l~~lnL~~n~---------------l~~lP~ 108 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVP--SSCSNMRNLQYLNLKNNR---------------LQSLPA 108 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCc--hhhhhhhcchhheeccch---------------hhcCch
Confidence 4889999999999999888 889999999999998876 333334444433333221 123455
Q ss_pred CccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCC-CCCCcc------------ccchhhhhcCCCCCE-EEcCC
Q psy6452 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHN-NHQDIN------------FVQESMSQKLTNLIV-LDLSH 294 (594)
Q Consensus 229 ~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~i~------------~l~~~~~~~l~~L~~-L~Ls~ 294 (594)
.+..+.+|++|++|+|++..+|.-+ ..+..++.+..++| ++..++ .+...+.....+|++ |+|++
T Consensus 109 ~~~~lknl~~LdlS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~ 187 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGPIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRY 187 (1081)
T ss_pred hHHhhhcccccccchhccCCCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeeccc
Confidence 5566788888888888888877654 35555555555555 111000 011111223344455 88888
Q ss_pred CCCCCCCCcCCCcCccEEeccCCccccCchh---h----------hhccccccCCCcceEEcCCCCCCCCChhhhccCCC
Q psy6452 295 NKLSELPDFLNFKVLKELDISHNNFESMPLC---L----------QVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK 361 (594)
Q Consensus 295 N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~---~----------~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~ 361 (594)
|.+. +-+...+.+|+.|.+..|++..+... + ........|.+|+++++++|+++.+|.+ ...+.+
T Consensus 188 N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w-i~~~~n 265 (1081)
T KOG0618|consen 188 NEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW-IGACAN 265 (1081)
T ss_pred chhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH-HHhccc
Confidence 8877 32344444444444444444332100 0 0011124567899999999999999954 468999
Q ss_pred CcEEECCCCCCCCCCCccc-cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 362 LVKLDISHNQIKILHKPRC-THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 362 L~~L~Ls~N~l~~l~~~~~-~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
|+.|+..+|+++.++...+ ..+|+.|.+..|.+..+|... ..+++|+.|+|..|+ .+.+|..+.....
T Consensus 266 le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~--L~~lp~~~l~v~~------- 334 (1081)
T KOG0618|consen 266 LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNN--LPSLPDNFLAVLN------- 334 (1081)
T ss_pred ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhcc--ccccchHHHhhhh-------
Confidence 9999999999987765533 458999999999999999976 679999999999986 7778875544332
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-cc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IG 519 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~ 519 (594)
..+..|..+.|++.......=..++.|+.|.+.+| .+....-+.+.++++|+.|+|++|+|..+|+. +.
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN----------~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN----------HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcC----------cccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 23566677777776655333345678999999997 34444445677889999999999999999987 89
Q ss_pred CCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCH
Q psy6452 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++..|+.|+||+|+++.||.+...+..|++|...+|+|..+| .+..++.|+.+|++.|.++.+..
T Consensus 405 kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhh
Confidence 999999999999999999999999999999999999999999 68999999999999999987643
|
|
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=226.75 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=94.9
Q ss_pred ceeeeeeecccccccccccccccceeeeceecccccccchhhhccCccEEecCCCCCcccChhh---hccCcEEEccCcc
Q psy6452 106 GRMICTIMKFGKEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNK 182 (594)
Q Consensus 106 g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~ 182 (594)
|..|.|..+...+|+..+ |...+ .+.|..|+|++||+++ +++|+.||||+|.
T Consensus 48 g~~VdCr~~GL~eVP~~L-------------------P~~tv------eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~ 102 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPANL-------------------PPETV------EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN 102 (498)
T ss_pred CceEEccCCCcccCcccC-------------------CCcce------EEEeccCCcccCChhhccchhhhceecccccc
Confidence 477777777666665555 22222 6778899999999999 6789999999999
Q ss_pred ccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccC-CCCcccchHhhhcCCCCC
Q psy6452 183 AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSH-QDINFVQESMSQKLTNLT 261 (594)
Q Consensus 183 i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~ 261 (594)
|+.|.+. .|++++++.+|-+-+ |+|++++.++|.++..|+
T Consensus 103 Is~I~p~---------------------------------------AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 103 ISFIAPD---------------------------------------AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred hhhcChH---------------------------------------hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 9987733 334445554444433 666666666666666666
Q ss_pred EEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCc
Q psy6452 262 VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNN 318 (594)
Q Consensus 262 ~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~ 318 (594)
.|.+.-|++. -+...+|..+++|..|.+..|.+..++ .|..+..++++.+..|.
T Consensus 144 rLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChhhhc---chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 6666666633 345566666666666666666666555 35566666666666555
|
|
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-27 Score=229.20 Aligned_cols=263 Identities=15% Similarity=0.141 Sum_probs=190.6
Q ss_pred EecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 155 RTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 155 l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+.++.++++||..++..-.+++|..|+|+.++ +..|+.++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP---------------------------------------~~aF~~l~ 91 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIP---------------------------------------PGAFKTLH 91 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCC---------------------------------------hhhccchh
Confidence 345577899999999999999999999999988 44567899
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
+|+.||||+|+|+.|.+++|.+++.|..|-+.+ |+|+ .+|.++|.++..|+.|.+.-|++..++ .|..+++|..
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh---hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 999999999999999999999999998888777 8854 589999999999999999999999877 5889999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCC------------CChhhhccCCCCcEEECCCCCCCCCCCcc
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES------------MPLCLQVHFCKLVKLDISHNQIKILHKPR 379 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~------------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 379 (594)
|.+.+|.+..++...+... ..++.+.+..|.+.. .....+.++.-.....+.++++..++...
T Consensus 169 LslyDn~~q~i~~~tf~~l-----~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGL-----AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcccchhhhhhccccccch-----hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence 9999999999887554332 567777777776331 11112222222222233333333322222
Q ss_pred c----------------------------cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhh
Q psy6452 380 C----------------------------THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431 (594)
Q Consensus 380 ~----------------------------~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~ 431 (594)
| .++|+.|++++|++..|.+.. |.....+++|.|..|+ +..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-Fe~~a~l~eL~L~~N~----------l~~ 312 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA-FEGAAELQELYLTRNK----------LEF 312 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-hcchhhhhhhhcCcch----------HHH
Confidence 2 246666777777666665554 5666667777776664 223
Q ss_pred cccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCC
Q psy6452 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475 (594)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 475 (594)
+.-..+..+++|+.|+|.+|+|+...+.+|..+.+|..|++-.|
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 33334455667777777777777777777777777777777665
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=239.08 Aligned_cols=317 Identities=20% Similarity=0.238 Sum_probs=251.0
Q ss_pred ccCccCC-CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCCCcC
Q psy6452 227 NCCNKQY-HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELPDFL 304 (594)
Q Consensus 227 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 304 (594)
+..|..+ .+|+.|++.++.+..+|... ...+|++|++++|++.. ++.+. ..+++|+.|+|++| .+..+|.+.
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~---L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls 654 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEK---LWDGV-HSLTGLRNIDLRGSKNLKEIPDLS 654 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccc---ccccc-ccCCCCCEEECCCCCCcCcCCccc
Confidence 3334444 46999999999999998764 57899999999999654 55554 68999999999987 477899999
Q ss_pred CCcCccEEeccCCc-cccCchhhhhccccccCCCcceEEcCCC-CCCCCChhhhccCCCCcEEECCCCCC-CCCCCcccc
Q psy6452 305 NFKVLKELDISHNN-FESMPLCLQVHFYVHIPYKHSQSDISHN-NFESMPLCLQVHFCKLVKLDISHNQI-KILHKPRCT 381 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~-l~~lp~~~~~~~~~~~~~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~ 381 (594)
.+++|++|++++|. +..+|..+... .+|+.|++++| .++.+|... ++++|+.|++++|.. ..++ ...
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L------~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p--~~~ 724 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYL------NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFP--DIS 724 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhcc------CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccc--ccc
Confidence 99999999999974 66788765432 68999999986 677888765 789999999999853 3332 234
Q ss_pred CCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc
Q psy6452 382 HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 461 (594)
.+|+.|++++|.+..+|..+ .+++|+.|.+.++. ...+...+..... ......++|+.|++++|......|..+
T Consensus 725 ~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~--~~~l~~~~~~l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 725 TNISWLDLDETAIEEFPSNL---RLENLDELILCEMK--SEKLWERVQPLTP-LMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred CCcCeeecCCCccccccccc---cccccccccccccc--hhhccccccccch-hhhhccccchheeCCCCCCccccChhh
Confidence 68999999999999999865 57888888887743 1111111100000 011234689999999999888889999
Q ss_pred ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccc-cCccccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV-QLNCIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 462 ~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
+.+++|+.|++++| +.++.+|..+ .+++|+.|+|++| .+..+|.. ..+|+.|+|++|.|+.+|.+
T Consensus 799 ~~L~~L~~L~Ls~C----------~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 799 QNLHKLEHLEIENC----------INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred hCCCCCCEEECCCC----------CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH
Confidence 99999999999987 5677888776 7899999999997 45566653 36899999999999999999
Q ss_pred ccCCCCCCEEECcC-CCCCccCcccccCCCCcEEEccCCC
Q psy6452 541 FANLKSLKILDVSY-NKLTMLPDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~-N~l~~ip~~l~~l~~L~~L~L~~N~ 579 (594)
+..+++|++|+|++ |+++.+|..+..+++|+.++++++.
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999999998 5888998888899999999998875
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=225.45 Aligned_cols=268 Identities=25% Similarity=0.262 Sum_probs=206.6
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
..-..|+|+++.|+.+|+... ++|+.|++++|+|+.+ |. .+++|++|+|++|+|+.+|.+ .++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~L---P~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSL---PA----LPPELRTLEVSGNQLTSLPVL--PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCC---CC----CCCCCcEEEecCCccCcccCc--ccccceee
Confidence 346689999999999988654 4799999999997764 42 357899999999999998864 46899999
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.++.+|. .|.+|+.|++++|+++.+|. ..++|+.|++++|+|++++. ...+|+.|++++|.
T Consensus 269 Ls~N~L~~Lp~---------lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 269 IFSNPLTHLPA---------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ 333 (788)
T ss_pred ccCCchhhhhh---------chhhcCEEECcCCccccccc----cccccceeECCCCccccCCC--CcccccccccccCc
Confidence 99999998874 23678899999999998875 34689999999999988754 34467778888777
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
+..+|... .+|+.|+++ +|+++... .. ..+|+.|+++
T Consensus 334 L~~LP~lp-----~~Lq~LdLS----------------------------------~N~Ls~LP-~l---p~~L~~L~Ls 370 (788)
T PRK15387 334 LTSLPTLP-----SGLQELSVS----------------------------------DNQLASLP-TL---PSELYKLWAY 370 (788)
T ss_pred cccccccc-----cccceEecC----------------------------------CCccCCCC-CC---Ccccceehhh
Confidence 77666421 244445554 44444322 11 2456777888
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECc
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVS 553 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 553 (594)
+| .+..+|.. ..+|+.|+|++|.|+.+|... ++|+.|++++|+|+.+|... .+|+.|+++
T Consensus 371 ~N-----------~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls 430 (788)
T PRK15387 371 NN-----------RLTSLPAL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP---SGLLSLSVY 430 (788)
T ss_pred cc-----------ccccCccc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch---hhhhhhhhc
Confidence 74 34456643 357999999999999998643 68999999999999998643 578899999
Q ss_pred CCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 554 YNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 554 ~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
+|+|+.||..+..+++|+.|+|++|+|+...+..+..+
T Consensus 431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 431 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred cCcccccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 99999999999999999999999999997766655433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=224.71 Aligned_cols=247 Identities=22% Similarity=0.330 Sum_probs=161.3
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
.+.+.|++++++++.+|..+. ++|+.|+|++|+|+. +|...+ ++|++|++++|+++.+|.- -..+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~Lts---LP~~l~---~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP---EQITTLILDNNELKS---LPENLQ---GNIKTLYANSNQLTSIPAT-LPDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc---cCCcEEEecCCCCCc---CChhhc---cCCCEEECCCCccccCChh-hhccccEEE
Confidence 356789999999998887542 578899999998665 565543 5889999999998888741 124788899
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
|++|.++.+|..+ +.+|+.|++++|+++.+|...+ ++|+.|++++|+++.++. .+..+|+.|++++|.
T Consensus 248 Ls~N~L~~LP~~l--------~s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~-~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 248 LSINRITELPERL--------PSALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPA-HLPSGITHLNVQSNS 315 (754)
T ss_pred CcCCccCcCChhH--------hCCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcc-cchhhHHHHHhcCCc
Confidence 9999988888644 2578888888888888776543 478888888888877653 223456666666666
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
+..+|..+ .++|+ .|++++|.++.. |..+ .++|+.|+++
T Consensus 316 Lt~LP~~l----~~sL~----------------------------------~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls 354 (754)
T PRK15370 316 LTALPETL----PPGLK----------------------------------TLEAGENALTSL-PASL--PPELQVLDVS 354 (754)
T ss_pred cccCCccc----cccce----------------------------------eccccCCccccC-Chhh--cCcccEEECC
Confidence 55555432 12344 444444444332 1112 1456666666
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccc----cCCCCCCE
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESF----ANLKSLKI 549 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~ 549 (594)
+| .+..+|..+ .++|+.|+|++|+|+.+|..+. ..|+.|++++|+|+.+|..+ ..++++..
T Consensus 355 ~N-----------~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 355 KN-----------QITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred CC-----------CCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccE
Confidence 64 233444433 2467777777777777776543 35777777777777665533 33466677
Q ss_pred EECcCCCCC
Q psy6452 550 LDVSYNKLT 558 (594)
Q Consensus 550 L~Ls~N~l~ 558 (594)
|+|.+|.|+
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 777777766
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=226.85 Aligned_cols=286 Identities=21% Similarity=0.255 Sum_probs=178.5
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCC-CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELP-DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~l~~L~ 310 (594)
+.+|+.|++++|++..++... ..+++|++|+|+++.. +..+|. ++.+++|+.|+|++| .+..+| .+..+++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~--l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKN--LKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCC--cCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 356666666666666665443 4566666666665432 222332 345666666666665 344555 355666666
Q ss_pred EEeccCC-ccccCchhhhhccccccCCCcceEEcCCCC-CCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEe
Q psy6452 311 ELDISHN-NFESMPLCLQVHFYVHIPYKHSQSDISHNN-FESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N-~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~ 388 (594)
.|++++| .++.+|..+ ...+|+.|++++|. +..+|. ...+|+.|++++|.++.++.....++|+.|.
T Consensus 685 ~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-------NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELI 753 (1153)
T ss_pred EEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccccccccccccc
Confidence 6666664 455555432 12466666666653 223332 1345666666666666655444445666666
Q ss_pred CCCCCCCCC-------CchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc
Q psy6452 389 MNHNIGMKI-------PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461 (594)
Q Consensus 389 L~~N~~~~i-------p~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 461 (594)
+.++....+ +... +...++|+.|++++|. ..+.+|.++ ..+++|+.|++++|......|..+
T Consensus 754 l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~-~l~~lP~si---------~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIP-SLVELPSSI---------QNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ccccchhhccccccccchhh-hhccccchheeCCCCC-CccccChhh---------hCCCCCCEEECCCCCCcCeeCCCC
Confidence 655322111 1111 2334677888887764 455566543 345678888887775444445444
Q ss_pred ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccC-CCCcccCcc
Q psy6452 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH-NKVYKLPES 540 (594)
Q Consensus 462 ~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~lp~~ 540 (594)
.+++|+.|++++| ..+..+|.. .++|+.|+|++|.|+.+|.++..+++|+.|+|++ |+++.+|..
T Consensus 823 -~L~sL~~L~Ls~c----------~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 823 -NLESLESLDLSGC----------SRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred -CccccCEEECCCC----------Ccccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 6788888998887 445555542 3578899999999999998888899999999988 678888887
Q ss_pred ccCCCCCCEEECcCC-CCCc
Q psy6452 541 FANLKSLKILDVSYN-KLTM 559 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N-~l~~ 559 (594)
+..+++|+.|++++| .++.
T Consensus 889 ~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 889 ISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccccCCCeeecCCCccccc
Confidence 888889999999887 4543
|
syringae 6; Provisional |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=217.95 Aligned_cols=245 Identities=24% Similarity=0.314 Sum_probs=138.3
Q ss_pred ccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCcc
Q psy6452 152 LSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNK 231 (594)
Q Consensus 152 L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~ 231 (594)
...+.+.+++++.+|..+.++|+.|+|++|+|+.++..
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~------------------------------------------ 217 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPEN------------------------------------------ 217 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChh------------------------------------------
Confidence 45666666666666666666667777777766655410
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccE
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~ 311 (594)
..++|+.|++++|+|+.+|...+ .+|+.|+|++|.++. +|..+. .+|+.|++++|+|+.+|.-. .++|+.
T Consensus 218 l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~---LP~~l~---s~L~~L~Ls~N~L~~LP~~l-~~sL~~ 287 (754)
T PRK15370 218 LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITE---LPERLP---SALQSLDLFHNKISCLPENL-PEELRY 287 (754)
T ss_pred hccCCCEEECCCCccccCChhhh---ccccEEECcCCccCc---CChhHh---CCCCEEECcCCccCcccccc-CCCCcE
Confidence 01356666666666666665432 356666666666443 444332 35666666666666665311 135666
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|++++|+|+.+|..+ +.+|+.|++++|.++.+|...+ ++|+.|++++|.++.+
T Consensus 288 L~Ls~N~Lt~LP~~l--------p~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~Lt~L---------------- 340 (754)
T PRK15370 288 LSVYDNSIRTLPAHL--------PSGITHLNVQSNSLTALPETLP---PGLKTLEAGENALTSL---------------- 340 (754)
T ss_pred EECCCCccccCcccc--------hhhHHHHHhcCCccccCCcccc---ccceeccccCCccccC----------------
Confidence 666666666655322 2355566666666665554332 3455555555555544
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
|..+ .++|+.|++++|+ ...+|. .+ .++|+.|+
T Consensus 341 ------P~~l----~~sL~~L~Ls~N~--L~~LP~---------------------------------~l--p~~L~~Ld 373 (754)
T PRK15370 341 ------PASL----PPELQVLDVSKNQ--ITVLPE---------------------------------TL--PPTITTLD 373 (754)
T ss_pred ------Chhh----cCcccEEECCCCC--CCcCCh---------------------------------hh--cCCcCEEE
Confidence 3322 1344444444432 111221 11 12344555
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccc----cCCCCCcEEEccCCCCc
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI----GNLICLEKLNISHNKVY 535 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~----~~l~~L~~L~Ls~N~l~ 535 (594)
+++| .+..+|..+. .+|+.|++++|+|+.+|..+ ..++.+..|+|.+|.++
T Consensus 374 Ls~N-----------~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 374 VSRN-----------ALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCC-----------cCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5553 2334444432 36888999999999887654 44588999999999987
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-17 Score=166.73 Aligned_cols=280 Identities=21% Similarity=0.195 Sum_probs=146.8
Q ss_pred EEEccCCCCc-ccchHhhhcCCCCCEEECCCCCCCCc--cccchhhhhcCCCCCEEEcCCCCCCCCC--------CcCCC
Q psy6452 238 TVNLSHQDIN-FVQESMSQKLTNLTVLDLSHNNHQDI--NFVQESMSQKLTNLIVLDLSHNKLSELP--------DFLNF 306 (594)
Q Consensus 238 ~L~Ls~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~i--~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--------~~~~l 306 (594)
.|+|..+.++ .-....|..+..|++|+++++.++.- ..++ ..+...++|++|+++++.+...+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3556666665 22234455666677777777775431 1122 22345566777777776665321 13455
Q ss_pred cCccEEeccCCccccC-chhhhhccccccCCCcceEEcCCCCCCCCCh----hhhccC-CCCcEEECCCCCCCCCCCccc
Q psy6452 307 KVLKELDISHNNFESM-PLCLQVHFYVHIPYKHSQSDISHNNFESMPL----CLQVHF-CKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~l-p~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~----~~~~~l-~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
++|++|++++|.+... +..+.... .. ++|++|++++|+++.-.. ..+..+ ++|+.|++++|.+++....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~--~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 155 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLL--RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-- 155 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHh--cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--
Confidence 6666666666666532 22221110 11 235555555555542111 112233 4555555555555431100
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC---
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN--- 457 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--- 457 (594)
.++. .+..+.+|+.|++++| .+++..
T Consensus 156 ---------------~~~~--~~~~~~~L~~L~l~~n----------------------------------~l~~~~~~~ 184 (319)
T cd00116 156 ---------------ALAK--ALRANRDLKELNLANN----------------------------------GIGDAGIRA 184 (319)
T ss_pred ---------------HHHH--HHHhCCCcCEEECcCC----------------------------------CCchHHHHH
Confidence 0011 1233344555555544 333211
Q ss_pred -ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-----cccc-cCCCCCcEEEcc
Q psy6452 458 -VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-----PEDI-GNLICLEKLNIS 530 (594)
Q Consensus 458 -~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-----p~~~-~~l~~L~~L~Ls 530 (594)
+..+..+++|+.|++++|.+.. .....++..+..+++|++|++++|.++.. ...+ ...+.|++|+++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTD------EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccCh------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 1122333455555655542221 11122334455667888888888888731 1111 134789999999
Q ss_pred CCCCc-----ccCccccCCCCCCEEECcCCCCCc-----cCcccccC-CCCcEEEccCCCC
Q psy6452 531 HNKVY-----KLPESFANLKSLKILDVSYNKLTM-----LPDGFVML-SNLTTFYAQRKYW 580 (594)
Q Consensus 531 ~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----ip~~l~~l-~~L~~L~L~~N~l 580 (594)
+|.++ .+...+..+++|+++++++|.++. +...+... +.|+++++.+|+|
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99886 334456666889999999999983 33344555 7889999988875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-18 Score=149.32 Aligned_cols=115 Identities=23% Similarity=0.463 Sum_probs=89.1
Q ss_pred ccccccCCCcceEeCCCCcCcccccccccc-cccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc
Q psy6452 458 VSQLKYLKNIKYLNCSNDIDHRKSQDFVNV-LWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536 (594)
Q Consensus 458 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~-~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~ 536 (594)
|..|+.++.|++||+.+| |. -..+|..|+.++.|+.|+|++|.+.-+|..++++++|+.|.+..|.+-+
T Consensus 95 prgfgs~p~levldltyn----------nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYN----------NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred ccccCCCchhhhhhcccc----------ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh
Confidence 455666666666666665 22 2356777888888999999999999888888999999999999999888
Q ss_pred cCccccCCCCCCEEECcCCCCCccCcccccCC---CCcEEEccCCCCcc
Q psy6452 537 LPESFANLKSLKILDVSYNKLTMLPDGFVMLS---NLTTFYAQRKYWMF 582 (594)
Q Consensus 537 lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~---~L~~L~L~~N~l~~ 582 (594)
+|..++.++.|+.|.+.+|+++.+|..++.+. +=+.+.+.+|+|-.
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 98888888899999999999998887765543 33567777888753
|
|
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-18 Score=150.06 Aligned_cols=74 Identities=30% Similarity=0.475 Sum_probs=51.3
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccC
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp 538 (594)
..|-.+..|+.|++++ |...-+|..++++++|+.|.+..|.+-++|..++.++.|+.|++.+|+++-+|
T Consensus 121 gnff~m~tlralyl~d-----------ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGD-----------NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cchhHHHHHHHHHhcC-----------CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 3444556666677766 45566677777777777777777777777777777777777777777777776
Q ss_pred ccccC
Q psy6452 539 ESFAN 543 (594)
Q Consensus 539 ~~~~~ 543 (594)
+.++.
T Consensus 190 pel~~ 194 (264)
T KOG0617|consen 190 PELAN 194 (264)
T ss_pred hhhhh
Confidence 65443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-15 Score=156.49 Aligned_cols=266 Identities=22% Similarity=0.174 Sum_probs=160.1
Q ss_pred EEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCC-----CC-CcCCCcCccEEeccCCccccCchhhhhc-ccccc
Q psy6452 262 VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LP-DFLNFKVLKELDISHNNFESMPLCLQVH-FYVHI 334 (594)
Q Consensus 262 ~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~-----lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~-~~~~~ 334 (594)
.|+|..+.+++-. . ...+..+.+|+.|+++++.++. ++ .+...++|++|+++++.+...+..+... ..+..
T Consensus 2 ~l~L~~~~l~~~~-~-~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTER-A-TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccc-h-HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4677788776421 2 3455677788999999888852 33 2446677888888888776433222110 00011
Q ss_pred CCCcceEEcCCCCCCCCChhhhccCCC---CcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccE
Q psy6452 335 PYKHSQSDISHNNFESMPLCLQVHFCK---LVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~~i~~~~~~~l~~---L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~ 411 (594)
..+|+.|++++|.+.......+..+.+ |++|++++|+++...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~----------------------------------- 124 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG----------------------------------- 124 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH-----------------------------------
Confidence 234444455444444322222222222 444444444433200
Q ss_pred EECcCCCCccCCccHHHhhhccccccccc-CCCcEEEcCCcccccc----CccccccCCCcceEeCCCCcCccccccccc
Q psy6452 412 LNMSSTDPFFEHLPIWLLNHMELKENGVF-SNLISLHMQNTAAVMS----NVSQLKYLKNIKYLNCSNDIDHRKSQDFVN 486 (594)
Q Consensus 412 L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n 486 (594)
.+ .+.. .+..+ ++|+.|++++|.+++. ....+..+.+|+.|++++|.+...
T Consensus 125 ------------~~-~l~~-----~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------ 180 (319)
T cd00116 125 ------------LR-LLAK-----GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA------ 180 (319)
T ss_pred ------------HH-HHHH-----HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH------
Confidence 00 0000 01112 3566666666665532 233466778899999999743321
Q ss_pred ccccCcccccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCccc--C---ccc-cCCCCCCEEECcCC
Q psy6452 487 VLWELPLSILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVYKL--P---ESF-ANLKSLKILDVSYN 555 (594)
Q Consensus 487 ~~~~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~l--p---~~~-~~l~~L~~L~Ls~N 555 (594)
....++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.++.. . ..+ ...+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 11234445556789999999999997 3445577889999999999999842 1 111 13479999999999
Q ss_pred CCC-----ccCcccccCCCCcEEEccCCCCcccCHhHH
Q psy6452 556 KLT-----MLPDGFVMLSNLTTFYAQRKYWMFLTISLL 588 (594)
Q Consensus 556 ~l~-----~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~ 588 (594)
.|+ .+.+.+..+++|+++++++|.++.-+...+
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 997 344556777999999999999997765444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-14 Score=146.12 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=87.1
Q ss_pred CCCcccEEEccCCCCcccch-HhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-C--cCCCc
Q psy6452 232 QYHDIFTVNLSHQDINFVQE-SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-D--FLNFK 307 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~-~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~--~~~l~ 307 (594)
++.+|+.+.|.+..+...+. .....+++++.||||+|-+..+..+ ..+...+++|+.|+|+.|++...- + -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-HHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45667777777777665553 3345677777777777776665433 344466777777777777765321 1 22456
Q ss_pred CccEEeccCCcccc--CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc---cccC
Q psy6452 308 VLKELDISHNNFES--MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP---RCTH 382 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~--lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~ 382 (594)
.|+.|.|+.|.++. +...+ ...++|+.|+|.+|....+....+.-++.|+.|||++|++-+.+.. ...+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~------~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWIL------LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhheEEeccCCCCHHHHHHHH------HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 67777777777662 11111 1124666666666643333333334455666666666666554422 2233
Q ss_pred CccEEeCCCCCCC
Q psy6452 383 TLQTFSMNHNIGM 395 (594)
Q Consensus 383 ~L~~L~L~~N~~~ 395 (594)
.|+.|+++.+.+.
T Consensus 272 ~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA 284 (505)
T ss_pred chhhhhccccCcc
Confidence 4444444444333
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-14 Score=149.53 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=49.6
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEe
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~ 388 (594)
-...||+.|++..+|..+... ..|+.+.|.+|.+..|+..+. ++..|++|||+.|+++.++...|.--|+.|.
T Consensus 77 t~~aDlsrNR~~elp~~~~~f------~~Le~liLy~n~~r~ip~~i~-~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAF------VSLESLILYHNCIRTIPEAIC-NLEALTFLDLSSNQLSHLPDGLCDLPLKVLI 149 (722)
T ss_pred hhhhhccccccccCchHHHHH------HHHHHHHHHhccceecchhhh-hhhHHHHhhhccchhhcCChhhhcCcceeEE
Confidence 344556666666555444322 245555555666665655553 6778888888888888776665554455555
Q ss_pred CCCCCCCCCCch
Q psy6452 389 MNHNIGMKIPEW 400 (594)
Q Consensus 389 L~~N~~~~ip~~ 400 (594)
+++|+++.+|..
T Consensus 150 ~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 150 VSNNKLTSLPEE 161 (722)
T ss_pred EecCccccCCcc
Confidence 555544444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=119.87 Aligned_cols=124 Identities=24% Similarity=0.266 Sum_probs=39.0
Q ss_pred EccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCcc
Q psy6452 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNF 319 (594)
Q Consensus 240 ~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l 319 (594)
.|..+.|..++. +.+..++++|+|++|.|+.|+.+. ..+.+|+.|+|++|.|+.++.+..++.|++|++++|+|
T Consensus 3 ~lt~~~i~~~~~--~~n~~~~~~L~L~~n~I~~Ie~L~----~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 3 RLTANMIEQIAQ--YNNPVKLRELNLRGNQISTIENLG----ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -----------------------------------S------TT-TT--EEE-TTS--S--TT----TT--EEE--SS--
T ss_pred cccccccccccc--cccccccccccccccccccccchh----hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCC
Confidence 345555666655 346667888888888876654322 25678888888888888888888888888888888888
Q ss_pred ccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCC
Q psy6452 320 ESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 320 ~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
+.++..+... .++|++|++++|+|..+.. ..+..+++|+.|++.+|.++.
T Consensus 77 ~~i~~~l~~~-----lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 77 SSISEGLDKN-----LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -S-CHHHHHH------TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CccccchHHh-----CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 8876543211 1577777777777776543 344567788888888887764
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=120.30 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=40.7
Q ss_pred cCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCc
Q psy6452 157 FCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHD 235 (594)
Q Consensus 157 l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~ 235 (594)
++.+.|..++... ..++++|+|++|+|+.+. .+. ..+.+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie---------~L~-------------------------------~~l~~ 43 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE---------NLG-------------------------------ATLDK 43 (175)
T ss_dssp -----------------------------------------S---------------------------------TT-TT
T ss_pred cccccccccccccccccccccccccccccccc---------chh-------------------------------hhhcC
Confidence 4456677777666 667889999999888765 111 12567
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC---cCCCcCccEE
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLNFKVLKEL 312 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~l~~L~~L 312 (594)
|+.|+|++|+|+.++. +..+++|++|++++|+|+.+ .......+++|++|+|++|+|.++.+ +..+++|+.|
T Consensus 44 L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i---~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 44 LEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSI---SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp --EEE-TTS--S--TT------TT--EEE--SS---S----CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred CCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcc---ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 8889999999998876 67888999999999996663 33443468889999999998886653 5577888888
Q ss_pred eccCCccccC
Q psy6452 313 DISHNNFESM 322 (594)
Q Consensus 313 ~Ls~N~l~~l 322 (594)
+|.+|.++.-
T Consensus 119 ~L~~NPv~~~ 128 (175)
T PF14580_consen 119 SLEGNPVCEK 128 (175)
T ss_dssp E-TT-GGGGS
T ss_pred eccCCcccch
Confidence 8888888754
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-12 Score=134.06 Aligned_cols=120 Identities=33% Similarity=0.478 Sum_probs=69.2
Q ss_pred CEEECCCCCC-CCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc--CccEEeccCCccccCchhhhhccccccCCC
Q psy6452 261 TVLDLSHNNH-QDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK--VLKELDISHNNFESMPLCLQVHFYVHIPYK 337 (594)
Q Consensus 261 ~~L~Ls~N~l-~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~--~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~ 337 (594)
..++++.|.+ ..+ .. ...++.++.|++.+|.++.++...... +|+.|++++|.+..+|..+ ..+++
T Consensus 96 ~~l~~~~~~~~~~~----~~-~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~------~~l~~ 164 (394)
T COG4886 96 PSLDLNLNRLRSNI----SE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL------RNLPN 164 (394)
T ss_pred ceeeccccccccCc----hh-hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh------hcccc
Confidence 3577777775 221 11 134566777777777777777654443 6777777777777765332 22356
Q ss_pred cceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcc-ccCCccEEeCCCC
Q psy6452 338 HSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR-CTHTLQTFSMNHN 392 (594)
Q Consensus 338 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~L~~N 392 (594)
|+.|++++|+++.++.... ..+.|+.|++++|+++.++... ....|+++.+++|
T Consensus 165 L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccccccCCchhhhhhhhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 6666666666666665432 4556666666666666555442 2333555555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-12 Score=132.14 Aligned_cols=195 Identities=27% Similarity=0.365 Sum_probs=104.4
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCC-CCcEEECCCCCCCCCC-CccccCCccEE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFC-KLVKLDISHNQIKILH-KPRCTHTLQTF 387 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~-~~~~~~~L~~L 387 (594)
..++++.|.+..-...+... ..++.|++.+|.++.++.... ... +|+.|++++|++..++ +...+++|+.|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~------~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L 168 (394)
T COG4886 96 PSLDLNLNRLRSNISELLEL------TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNKIESLPSPLRNLPNLKNL 168 (394)
T ss_pred ceeeccccccccCchhhhcc------cceeEEecCCcccccCccccc-cchhhcccccccccchhhhhhhhhcccccccc
Confidence 35777777764322111110 356666666666666666542 332 5666666666666653 33444555555
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
++++|.+..+|... ...+. |+.|++++|.+..... .......|
T Consensus 169 ~l~~N~l~~l~~~~--~~~~~----------------------------------L~~L~ls~N~i~~l~~-~~~~~~~L 211 (394)
T COG4886 169 DLSFNDLSDLPKLL--SNLSN----------------------------------LNNLDLSGNKISDLPP-EIELLSAL 211 (394)
T ss_pred ccCCchhhhhhhhh--hhhhh----------------------------------hhheeccCCccccCch-hhhhhhhh
Confidence 55555555555432 12333 3333333333333221 11233446
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 547 (594)
+.+.+++| ....++..+..+.++..|.+++|++..++..++.+++++.|++++|+++.++. +..+.++
T Consensus 212 ~~l~~~~N-----------~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l 279 (394)
T COG4886 212 EELDLSNN-----------SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNL 279 (394)
T ss_pred hhhhhcCC-----------cceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCcc
Confidence 66666663 23344445555566666666666666655556666666666666666666654 5566666
Q ss_pred CEEECcCCCCCcc
Q psy6452 548 KILDVSYNKLTML 560 (594)
Q Consensus 548 ~~L~Ls~N~l~~i 560 (594)
+.|++++|.++.+
T Consensus 280 ~~L~~s~n~~~~~ 292 (394)
T COG4886 280 RELDLSGNSLSNA 292 (394)
T ss_pred CEEeccCcccccc
Confidence 6666666666644
|
|
| >KOG2932|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-12 Score=118.60 Aligned_cols=73 Identities=38% Similarity=0.672 Sum_probs=69.0
Q ss_pred cccccccccccccCCceeeeccCCCccceeeeecceeeEeeecccCCcccccccCCCCeeeeceeeeeeeccccccc
Q psy6452 44 TQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMICTIMKFGKEIT 120 (594)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~C~~C~~~~~~~g~~i~~~~~~~~~~~ 120 (594)
-++++|+++...++++|+.+.|.+| .+.|++.|.+.|||+..|+++||++|+.+|.+|||+|+|+++|+-+.+
T Consensus 46 ~tv~~e~~~~~~~~p~f~~~~r~pp----hl~w~~~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CA 118 (389)
T KOG2932|consen 46 VTVACEDHLVLADLPVFKGIGRVPP----HLTWIKPVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECA 118 (389)
T ss_pred eeeccchhhhhcCCchhcccccCCC----ceeeeeecccccccccCcceEeecccCCcceeeecccccchhhhhhhh
Confidence 4789999999999999999999887 789999999999999999999999999999999999999999987754
|
|
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-12 Score=127.88 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=124.2
Q ss_pred CCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEEC
Q psy6452 336 YKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414 (594)
Q Consensus 336 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~L 414 (594)
.+|+.+.|.+..+..++. .....+++++.||||.|-+....+.. . ....+++|+.|++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-------------------~--i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-------------------K--IAEQLPSLENLNL 179 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH-------------------H--HHHhcccchhccc
Confidence 467778888877775553 23346778888888888776533210 0 1234555555555
Q ss_pred cCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc-cccCCCcceEeCCCCcCcccccccccccccCcc
Q psy6452 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ-LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL 493 (594)
Q Consensus 415 s~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~ 493 (594)
+.|+.....-. ..-..++.|+.|.++.|.++...... ...+++|+.|++..|. .+.....
T Consensus 180 s~Nrl~~~~~s---------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~----------~~~~~~~ 240 (505)
T KOG3207|consen 180 SSNRLSNFISS---------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE----------IILIKAT 240 (505)
T ss_pred ccccccCCccc---------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc----------ccceecc
Confidence 55541111000 00013456777777777776443332 3566777777777762 1111111
Q ss_pred cccCCCCCcEEeCccccCccccc--cccCCCCCcEEEccCCCCccc--Ccc-----ccCCCCCCEEECcCCCCCccCcc-
Q psy6452 494 SILYLSSIQELHLSNVQLNCIPE--DIGNLICLEKLNISHNKVYKL--PES-----FANLKSLKILDVSYNKLTMLPDG- 563 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~l--p~~-----~~~l~~L~~L~Ls~N~l~~ip~~- 563 (594)
+..-+..|++|||++|++-..+. ..+.++.|+.|+++.+.|.+| |+. ...+++|++|+++.|+|.+++.-
T Consensus 241 ~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 22234577888888887776653 366778888888888888755 332 24567788888888888765432
Q ss_pred -cccCCCCcEEEccCCCCccc
Q psy6452 564 -FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 564 -l~~l~~L~~L~L~~N~l~~l 583 (594)
+..+++|+.|.+..|++..-
T Consensus 321 ~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccchhhhhhccccccccc
Confidence 56667777777777777643
|
|
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-12 Score=134.71 Aligned_cols=264 Identities=22% Similarity=0.198 Sum_probs=149.9
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC-cCCCcCccEE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVLKEL 312 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~l~~L~~L 312 (594)
+.++.++...+.+...... ...+..++.+++..|.+..+ ......+.+|+.|++..|+|..+.. +..+++|++|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~----~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L 123 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKI----LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVL 123 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhh----hcccccccceeeeeccccchhhcccchhhhhcchhe
Confidence 4455555555555444432 13455666666777765441 1222466677777777777777666 6667777777
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC--ccccCCccEEeCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMN 390 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~~L~~L~L~ 390 (594)
++++|.|+.+... .....|+.|++++|.|+.+.... .++.|+.+++++|+++.+.. .....+++.++++
T Consensus 124 ~ls~N~I~~i~~l-------~~l~~L~~L~l~~N~i~~~~~~~--~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 124 DLSFNKITKLEGL-------STLTLLKELNLSGNLISDISGLE--SLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred eccccccccccch-------hhccchhhheeccCcchhccCCc--cchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 7777777765421 11123555555555555554332 36667777777777766655 2333445555555
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..+.... .+..+ ..+++..|.++...
T Consensus 195 ~n~i~~i~~~~---~~~~l----------------------------------~~~~l~~n~i~~~~------------- 224 (414)
T KOG0531|consen 195 GNSIREIEGLD---LLKKL----------------------------------VLLSLLDNKISKLE------------- 224 (414)
T ss_pred CCchhcccchH---HHHHH----------------------------------HHhhcccccceecc-------------
Confidence 55443333211 11111 11122222221110
Q ss_pred eCCCCcCcccccccccccccCcccccCCC--CCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCC
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLS--SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~--~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 548 (594)
. +..+. .|+.+++++|.+..++..+..+..+..|++++|++..+.. +.....+.
T Consensus 225 -------------------~----l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~ 280 (414)
T KOG0531|consen 225 -------------------G----LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLS 280 (414)
T ss_pred -------------------C----cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHH
Confidence 0 11112 3778888888888776667778888888888888886632 55566777
Q ss_pred EEECcCCCCC---ccCcc--cccCCCCcEEEccCCCCcccCH
Q psy6452 549 ILDVSYNKLT---MLPDG--FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 549 ~L~Ls~N~l~---~ip~~--l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
.+.+..|.+. ...+. ....+.++.+.+..|++.....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 281 ELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred HhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 7777777776 22222 4567788888888888776554
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-12 Score=134.31 Aligned_cols=142 Identities=21% Similarity=0.329 Sum_probs=120.6
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLN 305 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~ 305 (594)
+.+..++..|++|||+.|+++.+|..++ . --|+.|-+++|+++. +|..+ +.+..|..||.+.|.+.++| .+.+
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sNNkl~~---lp~~i-g~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSNNKLTS---LPEEI-GLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEecCcccc---CCccc-ccchhHHHhhhhhhhhhhchHHhhh
Confidence 4445667889999999999999998874 3 358999999999665 66666 58899999999999999998 6889
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+.+|+.|.+..|++..+|+.+..+ .|..||+|.|++..||.++ .++..|++|-|.+|.+++-+...|..
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~L-------pLi~lDfScNkis~iPv~f-r~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSL-------PLIRLDFSCNKISYLPVDF-RKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCC-------ceeeeecccCceeecchhh-hhhhhheeeeeccCCCCCChHHHHhc
Confidence 999999999999999999887643 6889999999999999875 69999999999999999876555543
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-12 Score=119.95 Aligned_cols=131 Identities=21% Similarity=0.144 Sum_probs=107.9
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccC
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGN 520 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 520 (594)
..|+.+++++|.|+.+. ...+-++.++.|+++.|.+ ..+. .+..+++|+.||||+|.++.+..+-..
T Consensus 284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i-----------~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRI-----------RTVQ-NLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred hhhhhccccccchhhhh-hhhhhccceeEEeccccce-----------eeeh-hhhhcccceEeecccchhHhhhhhHhh
Confidence 37888889998887654 4567788999999999633 3332 256678999999999999988777778
Q ss_pred CCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC--cccccCCCCcEEEccCCCCcccCH
Q psy6452 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP--DGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+-+.+.|.|++|.|.++. .+..+-+|..||+++|+|..+. .+++.+|.|+.+.|.+||++.++.
T Consensus 351 LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 899999999999999884 5788889999999999999653 458999999999999999998774
|
|
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-12 Score=124.18 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=48.6
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-----cccccc-cCCCCCcEEEccCC
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDI-GNLICLEKLNISHN 532 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~~~-~~l~~L~~L~Ls~N 532 (594)
..|..+++|++|||.+|-+..... ..+...+..+++|+.|++++|.+. .+-..+ ...++|++|.|.+|
T Consensus 207 eal~~~~~LevLdl~DNtft~egs------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGS------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHH------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 345666777777777652211100 012223444566666666666665 222222 23566666666666
Q ss_pred CCc-----ccCccccCCCCCCEEECcCCCC
Q psy6452 533 KVY-----KLPESFANLKSLKILDVSYNKL 557 (594)
Q Consensus 533 ~l~-----~lp~~~~~l~~L~~L~Ls~N~l 557 (594)
.|+ .+-.+....+.|..|+|++|++
T Consensus 281 eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 281 EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666 1222344456666666666666
|
|
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-11 Score=129.87 Aligned_cols=155 Identities=26% Similarity=0.266 Sum_probs=113.1
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+..++.+++..|.|..+... +..+.+|+.|++.+|+|..+..+ +..+++|++|++++|.|+.+..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccc----hhhhhcchheeccccccccccchhhccchhhh
Confidence 45677777888888874332 36778888888888887665321 35788888888888888888888888888888
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|.|+.++.. .....|+.+++++|.+..+.......+.+++.+++.+|.+..+........+..+++..|
T Consensus 146 ~l~~N~i~~~~~~-------~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISDISGL-------ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchhccCC-------ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccc
Confidence 8888888876532 123678888888888888776202477788889999998888776655556666677777
Q ss_pred CCCCCCc
Q psy6452 393 IGMKIPE 399 (594)
Q Consensus 393 ~~~~ip~ 399 (594)
.+..+..
T Consensus 219 ~i~~~~~ 225 (414)
T KOG0531|consen 219 KISKLEG 225 (414)
T ss_pred cceeccC
Confidence 6655543
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-11 Score=114.78 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=36.0
Q ss_pred CcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCc
Q psy6452 337 KHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPE 399 (594)
Q Consensus 337 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~ 399 (594)
.|+++|||+|.|+.|.... .-.|+++.|++|+|.|..+...++.++|+.||+++|.+..+..
T Consensus 285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred hhhhccccccchhhhhhhh-hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh
Confidence 4666666666666666554 2456666777777766666554555555555555554444433
|
|
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-10 Score=112.09 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCCcccEEEccCCCCcc----cchHhhhcCCCCCEEECCCCCCCCc-cccch------hhhhcCCCCCEEEcCCCCCC--
Q psy6452 232 QYHDIFTVNLSHQDINF----VQESMSQKLTNLTVLDLSHNNHQDI-NFVQE------SMSQKLTNLIVLDLSHNKLS-- 298 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~----l~~~~f~~l~~L~~L~Ls~N~l~~i-~~l~~------~~~~~l~~L~~L~Ls~N~l~-- 298 (594)
....++.|+||+|.+.. .....+...++|+..++|+=-.... ..+|. .++...++|++||||.|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 35688999999998873 2334456778888888886332111 12222 12235678999999999887
Q ss_pred CCCC----cCCCcCccEEeccCCccccC
Q psy6452 299 ELPD----FLNFKVLKELDISHNNFESM 322 (594)
Q Consensus 299 ~lp~----~~~l~~L~~L~Ls~N~l~~l 322 (594)
.++. +..+..|++|.|.+|.+...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 4554 34678899999999988743
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-10 Score=83.90 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=52.5
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
++|++|++++|+|+.+++.+|.++++|++|++++|.+ ..+++.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999999988899999999999999984 457788888999999999998875
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=83.15 Aligned_cols=58 Identities=40% Similarity=0.582 Sum_probs=31.0
Q ss_pred CCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCC
Q psy6452 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l 580 (594)
+|++|++++|+|+.+|. +|.++++|++|++++|+|+.++.. |..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45555555555555543 455555555555555555555432 55555555555555543
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.9e-09 Score=114.91 Aligned_cols=93 Identities=28% Similarity=0.405 Sum_probs=44.4
Q ss_pred ccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCC-ccCcc
Q psy6452 487 VLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDG 563 (594)
Q Consensus 487 ~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~ 563 (594)
..+.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 33444444444555555555555544 44444555555555555555554 34444455555555555555554 44444
Q ss_pred cccC-CCCcEEEccCCC
Q psy6452 564 FVML-SNLTTFYAQRKY 579 (594)
Q Consensus 564 l~~l-~~L~~L~L~~N~ 579 (594)
+..+ .++..+++.+|+
T Consensus 510 l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 LGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhhccccCceEEecCCc
Confidence 3322 234444454444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-08 Score=111.77 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=96.2
Q ss_pred CCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccC
Q psy6452 442 NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGN 520 (594)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~ 520 (594)
.++.|+|++|.+.+..+..+..+++|+.|+|++| ++.+.+|..+..+++|+.|+|++|+++ .+|+.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N----------~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN----------SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC----------cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 4788999999999999999999999999999998 677899999999999999999999999 78999999
Q ss_pred CCCCcEEEccCCCCc-ccCccccCC-CCCCEEECcCCCCC
Q psy6452 521 LICLEKLNISHNKVY-KLPESFANL-KSLKILDVSYNKLT 558 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~ 558 (594)
+++|++|+|++|+++ .+|..+..+ .++..+++++|...
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999999999 778877653 57789999999654
|
|
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-08 Score=113.20 Aligned_cols=84 Identities=29% Similarity=0.331 Sum_probs=56.7
Q ss_pred CcccEEEccCCC--CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCcc
Q psy6452 234 HDIFTVNLSHQD--INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~n~--l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~ 310 (594)
++|++|-+..|. +..++...|..++.|++|||++|. .+..+|..+ +.+-+|++|+|++..++.+| .+.++.+|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 456777777775 667777777777777777777655 334566554 56777777777777777777 466777777
Q ss_pred EEeccCCccc
Q psy6452 311 ELDISHNNFE 320 (594)
Q Consensus 311 ~L~Ls~N~l~ 320 (594)
+|++..+.-.
T Consensus 622 ~Lnl~~~~~l 631 (889)
T KOG4658|consen 622 YLNLEVTGRL 631 (889)
T ss_pred eecccccccc
Confidence 7777766543
|
|
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-08 Score=112.43 Aligned_cols=312 Identities=20% Similarity=0.197 Sum_probs=179.6
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCC-CcCCCcCc
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELP-DFLNFKVL 309 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~l~~L 309 (594)
.+..++.+.+-+|.+..++... ..++|++|-+..|.- .+..++..+|..++.|++|||++| .+..+| .++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhccCCC--CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 3467888999999998887653 566899999999962 123466788899999999999988 677999 47789999
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC----CCCccccCCcc
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI----LHKPRCTHTLQ 385 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~~~L~ 385 (594)
++|++++..++.+|.++... ..|.+|++.++.-....+.....+++|++|.+..-.... +.......+|+
T Consensus 598 ryL~L~~t~I~~LP~~l~~L------k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNL------KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hcccccCCCccccchHHHHH------HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999999999999988765 588999999887554446666679999999987665211 01111222333
Q ss_pred EEeCCCCCCCCCCchhhhcccCccc----EEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLK----ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~----~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 461 (594)
.+....... .+-.. +..+..|. .+.+.++ ...........+.+|+.|.+.++.+........
T Consensus 672 ~ls~~~~s~-~~~e~--l~~~~~L~~~~~~l~~~~~-----------~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 672 NLSITISSV-LLLED--LLGMTRLRSLLQSLSIEGC-----------SKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hheeecchh-HhHhh--hhhhHHHHHHhHhhhhccc-----------ccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 333211111 00000 01111111 1111110 011122233456677777777766643322221
Q ss_pred cc------CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCC
Q psy6452 462 KY------LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 462 ~~------l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l 534 (594)
.. ++++..+...++ .....+...--.++|+.|++.++... .+.+....+..+..+-+..+.+
T Consensus 738 ~~~~~~~~f~~l~~~~~~~~-----------~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 738 ESLIVLLCFPNLSKVSILNC-----------HMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred cccchhhhHHHHHHHHhhcc-----------ccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 11 111111111111 01111222223578899999888654 4444445555555555666665
Q ss_pred cccC--ccccCCCCCCEEECcCCCCCcc-----CcccccCCCCcEEEccCC
Q psy6452 535 YKLP--ESFANLKSLKILDVSYNKLTML-----PDGFVMLSNLTTFYAQRK 578 (594)
Q Consensus 535 ~~lp--~~~~~l~~L~~L~Ls~N~l~~i-----p~~l~~l~~L~~L~L~~N 578 (594)
..++ ...+.++++..+.+++=.+..+ |. +..+|.+.++.+.++
T Consensus 807 ~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~-l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 807 EGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK-LGKLPLLSTLTIVGC 856 (889)
T ss_pred ccceeeecCCCCceeEecccCccchhheehhcCcc-cccCccccccceecc
Confidence 5442 2445556666655555444422 22 356677777777664
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-10 Score=118.70 Aligned_cols=128 Identities=25% Similarity=0.297 Sum_probs=98.6
Q ss_pred CCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccC
Q psy6452 442 NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGN 520 (594)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~ 520 (594)
.|...+.+.|.+.... .++.-++.|+.|+|+.|+. ..+- .+..++.|++|||++|.+..+|.. ...
T Consensus 165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~-----------~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKF-----------TKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhh-----------hhhH-HHHhcccccccccccchhccccccchhh
Confidence 4556666667665443 5567778888999998632 2332 566788999999999999999875 445
Q ss_pred CCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccC
Q psy6452 521 LICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+. |+.|.|++|.++++- .+.++++|+.|||++|-|..-.+ -+..+..|+.|+|.|||+-.=|
T Consensus 232 c~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hh-heeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 55 999999999999884 58899999999999998884322 2678889999999999987655
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.9e-08 Score=93.11 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=42.6
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc---
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS--- 459 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--- 459 (594)
++..+-+..|.+.+....-.+..++.+..|+|+.++ +..+-++..+..|+.|..|.++++.+......
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~---------idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN---------IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccc---------cccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 444444444444444433334455555566666543 22333445556667777777777766443221
Q ss_pred ---ccccCCCcceEeCC
Q psy6452 460 ---QLKYLKNIKYLNCS 473 (594)
Q Consensus 460 ---~~~~l~~L~~L~Ls 473 (594)
.++.+++++.|+=+
T Consensus 271 r~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNGS 287 (418)
T ss_pred eEEEEeeccceEEecCc
Confidence 23566677766544
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-08 Score=93.71 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=125.4
Q ss_pred CCEEEcCCCCCCCCCC---cC-CCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCC
Q psy6452 287 LIVLDLSHNKLSELPD---FL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKL 362 (594)
Q Consensus 287 L~~L~Ls~N~l~~lp~---~~-~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L 362 (594)
++.|.+.++.|..... |+ ..+.+++|||.+|.|+...+. ..+..++|.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI---------------------------~~ile~lP~l 99 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI---------------------------GAILEQLPAL 99 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH---------------------------HHHHhcCccc
Confidence 4455555555554433 22 345566666666666653321 1233577777
Q ss_pred cEEECCCCCCCCCCCcc--ccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 363 VKLDISHNQIKILHKPR--CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 363 ~~L~Ls~N~l~~l~~~~--~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
++|+++.|++....... -..+|++|-|.+..+.=-........+|.++.|.+|.|
T Consensus 100 ~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N----------------------- 156 (418)
T KOG2982|consen 100 TTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN----------------------- 156 (418)
T ss_pred eEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc-----------------------
Confidence 77888877776532221 22366666666653321111112356777777777776
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc--cc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE--DI 518 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~--~~ 518 (594)
+++.+.+..+-+....+ .++.|....|....- ... +.++. -++++..+-+..|.|..... .+
T Consensus 157 -~~rq~n~Dd~c~e~~s~-------~v~tlh~~~c~~~~w-~~~-~~l~r------~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 157 -SLRQLNLDDNCIEDWST-------EVLTLHQLPCLEQLW-LNK-NKLSR------IFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred -hhhhhccccccccccch-------hhhhhhcCCcHHHHH-HHH-HhHHh------hcccchheeeecCcccchhhcccC
Confidence 44555555554433221 122222222200000 000 11111 24678888888888875533 36
Q ss_pred cCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCC-cc----Ccc--cccCCCCcEEEcc
Q psy6452 519 GNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLT-ML----PDG--FVMLSNLTTFYAQ 576 (594)
Q Consensus 519 ~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~-~i----p~~--l~~l~~L~~L~L~ 576 (594)
..++.+-.|+|+.|+|.+... .+.++++|..|.+++|.|. .+ +.. ++.+++++.|+=+
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 677888889999999886533 6788889999999999887 22 222 5678888887754
|
|
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-08 Score=87.22 Aligned_cols=90 Identities=19% Similarity=0.341 Sum_probs=46.8
Q ss_pred CCCcEEeCccccCccccccccC-CCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccC
Q psy6452 499 SSIQELHLSNVQLNCIPEDIGN-LICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~ 577 (594)
..|+..+|++|.+..+|..|.. .+.++.|+|++|.|+.+|..+..++.|+.|+++.|.|...|+-+..+.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 3444455555555555554432 235555555555555555555555555555555555555555544455555555555
Q ss_pred CCCcccCHhHH
Q psy6452 578 KYWMFLTISLL 588 (594)
Q Consensus 578 N~l~~l~~~~~ 588 (594)
|.+..||..+|
T Consensus 133 na~~eid~dl~ 143 (177)
T KOG4579|consen 133 NARAEIDVDLF 143 (177)
T ss_pred CccccCcHHHh
Confidence 55555555433
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-09 Score=113.59 Aligned_cols=158 Identities=20% Similarity=0.190 Sum_probs=107.8
Q ss_pred ccCCCcccEEEccCCCCcccch---------------------Hhhh----------cCCCCCEEECCCCCCCCccccch
Q psy6452 230 NKQYHDIFTVNLSHQDINFVQE---------------------SMSQ----------KLTNLTVLDLSHNNHQDINFVQE 278 (594)
Q Consensus 230 ~~~l~~L~~L~Ls~n~l~~l~~---------------------~~f~----------~l~~L~~L~Ls~N~l~~i~~l~~ 278 (594)
...+.+|+.|.|.++.|..... .+|. ....|...+.++|.+..+ .
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m----D 180 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM----D 180 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH----H
Confidence 3457788999999888864321 1111 112466777888886543 2
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhcc
Q psy6452 279 SMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358 (594)
Q Consensus 279 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~ 358 (594)
..+.-++.|+.|||++|+++.+..+..+++|++|||++|.++.+|.-- ..-..|..|.+++|.++.+.... +
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~------~~gc~L~~L~lrnN~l~tL~gie--~ 252 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLS------MVGCKLQLLNLRNNALTTLRGIE--N 252 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccc------hhhhhheeeeecccHHHhhhhHH--h
Confidence 344677888888888888888777778888888888888888877422 12245888888888887665443 7
Q ss_pred CCCCcEEECCCCCCCCCCCccc---cCCccEEeCCCCCCCCCCc
Q psy6452 359 FCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHNIGMKIPE 399 (594)
Q Consensus 359 l~~L~~L~Ls~N~l~~l~~~~~---~~~L~~L~L~~N~~~~ip~ 399 (594)
+.+|+.||+++|-|.+.....+ ...|+.|+|.+|.+..-|.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 7888888888887776543332 3467788888886655543
|
|
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-08 Score=87.15 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=85.7
Q ss_pred ccccCCCcceEeCCCCcCcccccccccccccCccccc-CCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccC
Q psy6452 460 QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp 538 (594)
.+.....|+..++++| .+..+|..|. .++.++.|+|++|.|+.+|..+..++.|+.|+++.|.+...|
T Consensus 48 ~l~~~~el~~i~ls~N-----------~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDN-----------GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred HHhCCceEEEEecccc-----------hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch
Confidence 3445566777788884 5556666655 345889999999999999999999999999999999999888
Q ss_pred ccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcc
Q psy6452 539 ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 539 ~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
..+..+.++-.||..+|.+..||-.+-.-+..-..++.+++|..
T Consensus 117 ~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred HHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 87877999999999999999887763322333344456677654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.9e-07 Score=62.59 Aligned_cols=36 Identities=36% Similarity=0.635 Sum_probs=14.8
Q ss_pred CcEEEccCCCCcccCccccCCCCCCEEECcCCCCCc
Q psy6452 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559 (594)
Q Consensus 524 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 559 (594)
|++|++++|+|+.+|..++.+++|+.|++++|+|+.
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 444444444444444334444444444444444443
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-07 Score=62.48 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=36.2
Q ss_pred CCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCH
Q psy6452 545 KSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++|++|++++|+|+.+|..+..+++|++|++++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999999889999999999999999998754
|
... |
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-06 Score=77.34 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC-----cCCCc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-----FLNFK 307 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~~~l~ 307 (594)
+++|..|.|++|+|+.|.+..-.-+++|..|.|.+|.|..++.+.+- ..+++|++|.+-+|.++.-.. +..++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL--a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL--ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh--ccCCccceeeecCCchhcccCceeEEEEecC
Confidence 34455555555555555544444444455555555554444433332 244455555555554443321 23444
Q ss_pred CccEEeccC
Q psy6452 308 VLKELDISH 316 (594)
Q Consensus 308 ~L~~L~Ls~ 316 (594)
+|++||.++
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 444444443
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-07 Score=90.32 Aligned_cols=133 Identities=22% Similarity=0.194 Sum_probs=95.3
Q ss_pred CcccEEEccCCCCcc-cchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCC---CcCCCcC
Q psy6452 234 HDIFTVNLSHQDINF-VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELP---DFLNFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp---~~~~l~~ 308 (594)
+.|++||||...|+. --..+++.+.+|+.|.|.++++.+ .+. ..++...+|+.|+|+.+ .++... -+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHH-HHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 469999999999883 234456889999999999999866 233 33468899999999987 566433 2678999
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCC--CC-CCChhhhccCCCCcEEECCCCCC
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN--FE-SMPLCLQVHFCKLVKLDISHNQI 372 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~--l~-~i~~~~~~~l~~L~~L~Ls~N~l 372 (594)
|..|+|+.+.++.-- ......++.++|+.|+|++.. +. +--...-..+++|.+||||+|..
T Consensus 262 L~~LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HhhcCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999999887410 111123566789999998863 22 21122235788999999998753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=83.14 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCCcEEECCCCCCCCCCCccccCCccEEeCCCC-CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccc
Q psy6452 359 FCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN 437 (594)
Q Consensus 359 l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N-~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~ 437 (594)
+.+++.|++++|.|+.++ .++.+|+.|.++++ .+..+|..+ .++|+.|++++|.. ...+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~-L~sLP~----------- 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPE-ISGLPE----------- 112 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccc-cccccc-----------
Confidence 456666666666666664 34456666666653 445555433 24666777766531 223332
Q ss_pred cccCCCcEEEcCCccccccCccccccC-CCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYL-KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE 516 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 516 (594)
+|+.|++..+.... +..+ ++|+.|.+.++.. .....+|.. -.++|++|++++|....+|.
T Consensus 113 ----sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~--------~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~ 173 (426)
T PRK15386 113 ----SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNP--------ENQARIDNL--ISPSLKTLSLTGCSNIILPE 173 (426)
T ss_pred ----ccceEEeCCCCCcc-----cccCcchHhheecccccc--------ccccccccc--cCCcccEEEecCCCcccCcc
Confidence 45555554433221 1112 2344555432200 000111100 01467777777766655554
Q ss_pred cccCCCCCcEEEccCCC
Q psy6452 517 DIGNLICLEKLNISHNK 533 (594)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~ 533 (594)
.+. .+|+.|+++.|.
T Consensus 174 ~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 174 KLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccc--ccCcEEEecccc
Confidence 444 467777776653
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-07 Score=90.44 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=57.6
Q ss_pred cceEEcCCCCCC-CCChhhhccCCCCcEEECCCCCCCCCCCcc--ccCCccEEeCCCC-CCCCCCchhhhcccCcccEEE
Q psy6452 338 HSQSDISHNNFE-SMPLCLQVHFCKLVKLDISHNQIKILHKPR--CTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELN 413 (594)
Q Consensus 338 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~~L~~L~L~~N-~~~~ip~~~~~~~~~~L~~L~ 413 (594)
+++||||+..|+ +--..++..+.+|+.|.+.++++.+-.... --.+|+.++++.+ .+++......+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 445555554444 111223456667777777777776522221 1235666666665 455555555567888888888
Q ss_pred CcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCc
Q psy6452 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNT 451 (594)
Q Consensus 414 Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n 451 (594)
++.|..+...+...+... -++|+.|+++++
T Consensus 267 lsWc~l~~~~Vtv~V~hi--------se~l~~LNlsG~ 296 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHI--------SETLTQLNLSGY 296 (419)
T ss_pred chHhhccchhhhHHHhhh--------chhhhhhhhhhh
Confidence 888754443333222111 235666666654
|
|
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=74.04 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=57.5
Q ss_pred cCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCC
Q psy6452 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCK 361 (594)
Q Consensus 283 ~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~ 361 (594)
.+.+...+||++|.+..++.|..++.|.+|.|++|+|+.|.+.+... .++|..|.|.+|.|..+.. .-++.+++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~-----~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF-----LPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred cccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh-----ccccceEEecCcchhhhhhcchhccCCc
Confidence 34556667777777777777777777777777777777776655432 2566677777776664322 12346777
Q ss_pred CcEEECCCCCCCCC
Q psy6452 362 LVKLDISHNQIKIL 375 (594)
Q Consensus 362 L~~L~Ls~N~l~~l 375 (594)
|++|.+-+|.++.-
T Consensus 115 L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHK 128 (233)
T ss_pred cceeeecCCchhcc
Confidence 88888877777653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-07 Score=86.09 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCCcEEEcCCccccccCcc-----ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc--
Q psy6452 441 SNLISLHMQNTAAVMSNVS-----QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-- 513 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-- 513 (594)
.+|+.+.+..|.|...... .+.++.+|++||+.+|-...... ..+...+..++.|+.|.+..|-++.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS------~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS------RYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH------HHHHHHhcccchhhhccccchhhcccc
Confidence 3667777777766443222 23456777777777762221110 0112233445567777777776661
Q ss_pred ---cccccc--CCCCCcEEEccCCCCc--c-----cCc-cccCCCCCCEEECcCCCCCcc
Q psy6452 514 ---IPEDIG--NLICLEKLNISHNKVY--K-----LPE-SFANLKSLKILDVSYNKLTML 560 (594)
Q Consensus 514 ---ip~~~~--~l~~L~~L~Ls~N~l~--~-----lp~-~~~~l~~L~~L~Ls~N~l~~i 560 (594)
+-..|. ..++|+.|-..+|.+. . ++. .-..++-|..|.+.+|+|++.
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 111121 2356666666666654 1 121 113455566666666666643
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-06 Score=80.88 Aligned_cols=169 Identities=18% Similarity=0.152 Sum_probs=105.2
Q ss_pred hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCCCccc
Q psy6452 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFV 249 (594)
Q Consensus 170 l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l 249 (594)
+..+.+++||+|.|..-... .+..+..+-.+|+..+++.-.....
T Consensus 29 ~d~~~evdLSGNtigtEA~e-----------------------------------~l~~~ia~~~~L~vvnfsd~ftgr~ 73 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAME-----------------------------------ELCNVIANVRNLRVVNFSDAFTGRD 73 (388)
T ss_pred hcceeEEeccCCcccHHHHH-----------------------------------HHHHHHhhhcceeEeehhhhhhccc
Confidence 66799999999999764421 0011122345666666665433211
Q ss_pred ----c------hHhhhcCCCCCEEECCCCCCCCccccc--hhhhhcCCCCCEEEcCCCCCCCCCC---------------
Q psy6452 250 ----Q------ESMSQKLTNLTVLDLSHNNHQDINFVQ--ESMSQKLTNLIVLDLSHNKLSELPD--------------- 302 (594)
Q Consensus 250 ----~------~~~f~~l~~L~~L~Ls~N~l~~i~~l~--~~~~~~l~~L~~L~Ls~N~l~~lp~--------------- 302 (594)
+ ..++.+|++|+..+||.|.+..- ..+ ...++.-..|++|.|++|.+..+..
T Consensus 74 kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK 152 (388)
T COG5238 74 KDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK 152 (388)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh
Confidence 1 12345778888888888887531 111 2344677888888888888764431
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCC--CChhhh---ccCCCCcEEECCCCCCCCC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES--MPLCLQ---VHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~--i~~~~~---~~l~~L~~L~Ls~N~l~~l 375 (594)
..+-|.|+...+..|++..-|....... +..-..|+.+.+.+|.|.. +..-+| ..+.+|+.|||.+|.++..
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~-l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAAL-LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHH-HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 2355788889999998887654433221 1222578888888888872 333322 2567888888888887753
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=68.89 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=70.4
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFL 304 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~ 304 (594)
..+|.++.+|+.+.+.. .+..+....|.++++|+.+.+..+ +. .++..+|..+++|+.+.+.. .+..++ .|.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~---~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT---SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS---CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc---ccceeeeecccccccccccc-ccccccccccc
Confidence 34677788999999885 788999999999999999999875 43 46778888888899999976 555444 477
Q ss_pred CCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCc
Q psy6452 305 NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLV 363 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 363 (594)
.+++|+.+++..+ ++.++...+.. .+|+.+.+.. .+..++...|.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~------~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSN------CNLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT-------T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcC------CCceEEEECC-CccEECCccccccccCC
Confidence 7899999999775 66666554422 2677777765 67778888887777764
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=80.73 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=50.5
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccc
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 483 (594)
..+.+++.|++++|. ...+|. ...+|+.|.++++.--...|..+ ..+|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~--L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C-------- 104 (426)
T PRK15386 49 EEARASGRLYIKDCD--IESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC-------- 104 (426)
T ss_pred HHhcCCCEEEeCCCC--CcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc--------
Confidence 346888899998873 344441 12368888888754434444433 257888888876
Q ss_pred cccccccCcccccCCCCCcEEeCccccC---cccccc
Q psy6452 484 FVNVLWELPLSILYLSSIQELHLSNVQL---NCIPED 517 (594)
Q Consensus 484 ~~n~~~~ip~~~~~l~~L~~L~Ls~N~l---~~ip~~ 517 (594)
..+..+|. +|+.|+++.+.+ ..+|..
T Consensus 105 --s~L~sLP~------sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 105 --PEISGLPE------SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred --cccccccc------ccceEEeCCCCCcccccCcch
Confidence 34555663 567777776654 345543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.1e-05 Score=65.65 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=67.8
Q ss_pred ccccccCCCcceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCc
Q psy6452 458 VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVY 535 (594)
Q Consensus 458 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~ 535 (594)
...|.++.+|+.+.+.+. +..++ ..|.++++|+.+.+.++ +..++.. |.++++|+.+.+.+ .+.
T Consensus 5 ~~~F~~~~~l~~i~~~~~------------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPNT------------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTTTTT-TT--EEEETST--------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HHHHhCCCCCCEEEECCC------------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 355667777777777642 22332 34566778889988875 7777665 88888899999976 666
Q ss_pred ccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 536 KLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 536 ~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
.++. .|..+++|+.+++..+ ++.++.. |... +|+.+.+.. .++.++...|.+..+|
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6655 7788899999999876 7777655 7776 999999886 6888899998877654
|
|
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=9.3e-05 Score=70.98 Aligned_cols=94 Identities=23% Similarity=0.306 Sum_probs=65.9
Q ss_pred cccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCC---CCCC
Q psy6452 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS---ELPD 302 (594)
Q Consensus 226 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~---~lp~ 302 (594)
+..++..+..|+.|.+.+..++.+.. |-.+++|++|.+|.|.+.....++.-+ ..+++|++|+++.|+|. +++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccch
Confidence 44455566778888888888877765 557888899999988443222344333 35588999999999877 4455
Q ss_pred cCCCcCccEEeccCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESM 322 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~l 322 (594)
+..+.+|..|++.+|..+.+
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcchhhhhcccCCcccc
Confidence 66777788888888876653
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=81.92 Aligned_cols=120 Identities=20% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCcceEEcCCCCCCCCC-hhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEEC
Q psy6452 336 YKHSQSDISHNNFESMP-LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414 (594)
Q Consensus 336 ~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~L 414 (594)
++|+.|.+++-.+..-. ...+.++++|..||+|+.+++.+......++|+.|.+.+=.+..-......-.+++|+.||+
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI 227 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI 227 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence 56666666555443221 23345778888888888888877666667778877777766665554444457899999999
Q ss_pred cCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc
Q psy6452 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS 459 (594)
Q Consensus 415 s~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 459 (594)
|......+. ..+....+ ....+++|+.||.+++.+.....+
T Consensus 228 S~~~~~~~~--~ii~qYle--c~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 228 SRDKNNDDT--KIIEQYLE--CGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cccccccch--HHHHHHHH--hcccCccccEEecCCcchhHHHHH
Confidence 986533333 22223322 223467888888887766554433
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=1e-05 Score=77.65 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=63.6
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC---cCCCcCc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLNFKVL 309 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~l~~L 309 (594)
+.+++.|++-++.|++|.- ...|+.|++|.||-|+|+.+. -+..+++|++|+|..|.|.++.+ +.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~-----pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA-----PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch-----hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 5678888888888888754 678888888888888866642 24678888888888888887764 4578888
Q ss_pred cEEeccCCcccc
Q psy6452 310 KELDISHNNFES 321 (594)
Q Consensus 310 ~~L~Ls~N~l~~ 321 (594)
+.|.|..|.-.+
T Consensus 91 r~LWL~ENPCc~ 102 (388)
T KOG2123|consen 91 RTLWLDENPCCG 102 (388)
T ss_pred hhHhhccCCccc
Confidence 888888886543
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00022 Score=79.96 Aligned_cols=107 Identities=24% Similarity=0.242 Sum_probs=51.2
Q ss_pred cCCCcEEEcCCccccccC-ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccc--c
Q psy6452 440 FSNLISLHMQNTAAVMSN-VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP--E 516 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip--~ 516 (594)
+|+|+.|.+.+-.+.... ...+..+++|..||+|+. .+..+ .+++++++|+.|.+.+=.+..-. .
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-----------nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-----------NISNL-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCC-----------CccCc-HHHhccccHHHHhccCCCCCchhhHH
Confidence 344444444444332221 222344555555555552 12222 34455555555555555554322 1
Q ss_pred cccCCCCCcEEEccCCCCcccC-------ccccCCCCCCEEECcCCCCC
Q psy6452 517 DIGNLICLEKLNISHNKVYKLP-------ESFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~lp-------~~~~~l~~L~~L~Ls~N~l~ 558 (594)
.+.+|++|+.||+|......-+ +....+++|+.||.|++.+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 2445666666666655443211 12234666677777666666
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=2.7e-05 Score=74.93 Aligned_cols=103 Identities=28% Similarity=0.230 Sum_probs=80.2
Q ss_pred hcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhcccccc
Q psy6452 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334 (594)
Q Consensus 255 ~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~ 334 (594)
+.+.+.+.|+.-++.|++| +++..++.|++|.||-|+|+++..|..+++|++|+|..|.|.++.+-. ++..
T Consensus 16 sdl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~----YLkn 86 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE----YLKN 86 (388)
T ss_pred hHHHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH----HHhc
Confidence 3467788999999998885 566799999999999999999999999999999999999999876322 3344
Q ss_pred CCCcceEEcCCCCCCC-----CChhhhccCCCCcEEE
Q psy6452 335 PYKHSQSDISHNNFES-----MPLCLQVHFCKLVKLD 366 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~~-----i~~~~~~~l~~L~~L~ 366 (594)
.++|+.|-|..|.-.+ .-..++.-+++|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4677777777776553 2233455677777775
|
|
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00038 Score=66.82 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=47.2
Q ss_pred CCCCCcEEeCccc--cCc-cccccccCCCCCcEEEccCCCCcccC--ccccCCCCCCEEECcCCCCCccCc----ccccC
Q psy6452 497 YLSSIQELHLSNV--QLN-CIPEDIGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD----GFVML 567 (594)
Q Consensus 497 ~l~~L~~L~Ls~N--~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l 567 (594)
.+++|+.|.++.| +++ .++.-...+++|++|+|++|+|+.+. ..+..+.+|..||+.+|..+.+-+ .|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3567777777777 333 33333445577777777777776431 135566677777777776664311 14555
Q ss_pred CCCcEEEc
Q psy6452 568 SNLTTFYA 575 (594)
Q Consensus 568 ~~L~~L~L 575 (594)
++|++|+-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 66666553
|
|
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=4.2e-05 Score=77.56 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=51.4
Q ss_pred CCCCCcEEeCccccCc-c-----ccccccCCCCCcEEEccCCCCc--ccCccccCCCCCCEEECcCCC-CC--ccCcccc
Q psy6452 497 YLSSIQELHLSNVQLN-C-----IPEDIGNLICLEKLNISHNKVY--KLPESFANLKSLKILDVSYNK-LT--MLPDGFV 565 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~-~-----ip~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~ip~~l~ 565 (594)
+++.|+.|.|+++.+. + +...-..+..|+.|.|++.... ..-+.+..+++|+.+++-+++ ++ .|...-.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 5778999999988543 2 2223456778888888888765 222356677888888888773 33 3333345
Q ss_pred cCCCCcEEEc
Q psy6452 566 MLSNLTTFYA 575 (594)
Q Consensus 566 ~l~~L~~L~L 575 (594)
++|++++..+
T Consensus 450 ~lp~i~v~a~ 459 (483)
T KOG4341|consen 450 HLPNIKVHAY 459 (483)
T ss_pred hCccceehhh
Confidence 6777776554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0024 Score=37.07 Aligned_cols=14 Identities=50% Similarity=0.698 Sum_probs=5.3
Q ss_pred CEEECcCCCCCccC
Q psy6452 548 KILDVSYNKLTMLP 561 (594)
Q Consensus 548 ~~L~Ls~N~l~~ip 561 (594)
++|||++|+|+.||
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33333333333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0032 Score=36.58 Aligned_cols=19 Identities=42% Similarity=0.716 Sum_probs=9.6
Q ss_pred CcEEEccCCCCcccCcccc
Q psy6452 524 LEKLNISHNKVYKLPESFA 542 (594)
Q Consensus 524 L~~L~Ls~N~l~~lp~~~~ 542 (594)
|++|+|++|+|+.||.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555544443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473|consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0003 Score=66.17 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=59.6
Q ss_pred cCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEc
Q psy6452 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYA 575 (594)
Q Consensus 496 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L 575 (594)
..+...+.||++.|++..+-..|+-++.|..|+++.|++..+|..+..+..+..+++..|..+..|.++...+.++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34456667777777766666566666777777777777777777777666777777777777777777777777777777
Q ss_pred cCCCCc
Q psy6452 576 QRKYWM 581 (594)
Q Consensus 576 ~~N~l~ 581 (594)
.+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777643
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.018 Score=34.86 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.8
Q ss_pred CCCCcEEEccCCCCcccCHhHHh
Q psy6452 567 LSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
+++|++|+|++|+|+.+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45677777777777777777765
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.018 Score=34.86 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.8
Q ss_pred CCCCcEEEccCCCCcccCHhHHh
Q psy6452 567 LSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
+++|++|+|++|+|+.+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45677777777777777777765
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.016 Score=31.21 Aligned_cols=13 Identities=54% Similarity=0.744 Sum_probs=4.0
Q ss_pred CCEEECcCCCCCc
Q psy6452 547 LKILDVSYNKLTM 559 (594)
Q Consensus 547 L~~L~Ls~N~l~~ 559 (594)
|+.|+|++|+|++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3344444443333
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.025 Score=30.49 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=6.7
Q ss_pred CCcEEEccCCCCcccC
Q psy6452 523 CLEKLNISHNKVYKLP 538 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp 538 (594)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555543
|
... |
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.0054 Score=62.70 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCcEEEcCCcccccc--CccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--cccc
Q psy6452 441 SNLISLHMQNTAAVMS--NVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN--CIPE 516 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~--~ip~ 516 (594)
+.|+.+++..+..... ..+.-.+++.|+.|.++.+...... -+..+..+-..+..|..|.|+++... ..-+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 3455555544433221 1222234566666666654322111 00111122234567778888887654 3334
Q ss_pred cccCCCCCcEEEccCCCCc---ccCccccCCCCCCEEE
Q psy6452 517 DIGNLICLEKLNISHNKVY---KLPESFANLKSLKILD 551 (594)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~ 551 (594)
.+..+++|+.++|-..+-- .+...-..++++++..
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 4667778888877776532 2222234556665543
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.00099 Score=71.65 Aligned_cols=140 Identities=20% Similarity=0.186 Sum_probs=85.4
Q ss_pred CCcEEEcCCccccccCcc----ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc----
Q psy6452 442 NLISLHMQNTAAVMSNVS----QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC---- 513 (594)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~---- 513 (594)
.+++|++..|.++..... .+.....++.++++.|.+..... .-....++..+....++++|.+++|.++.
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~--~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL--LVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh--HHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 445566666666554332 33446677777777764431100 00111112223346788888888888872
Q ss_pred -ccccccCCCC-CcEEEccCCCCcc-----cCccccCC-CCCCEEECcCCCCC-----ccCcccccCCCCcEEEccCCCC
Q psy6452 514 -IPEDIGNLIC-LEKLNISHNKVYK-----LPESFANL-KSLKILDVSYNKLT-----MLPDGFVMLSNLTTFYAQRKYW 580 (594)
Q Consensus 514 -ip~~~~~l~~-L~~L~Ls~N~l~~-----lp~~~~~l-~~L~~L~Ls~N~l~-----~ip~~l~~l~~L~~L~L~~N~l 580 (594)
+...+...+. +..|++++|++.. +.+.+..+ ..++.++++.|.|+ .+.+.+..++.++++.+++|++
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2223555555 7778888888872 23355555 67788899998888 2455566777888888888887
Q ss_pred ccc
Q psy6452 581 MFL 583 (594)
Q Consensus 581 ~~l 583 (594)
..-
T Consensus 303 ~~~ 305 (478)
T KOG4308|consen 303 TDY 305 (478)
T ss_pred ccH
Confidence 754
|
|
| >KOG0473|consensus | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.002 Score=60.80 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
+......+.||++.| .+-.+...|.-++.|..|+++.|.|..+|..+.....++.+++.+|..+..|.+
T Consensus 38 i~~~kr~tvld~~s~-----------r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-----------RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred hhccceeeeehhhhh-----------HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc
Confidence 344455666666664 222333345556788899999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEECcCCCCC
Q psy6452 541 FANLKSLKILDVSYNKLT 558 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~ 558 (594)
+...+.++++++.+|.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 999999999999999876
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.00087 Score=72.07 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=20.0
Q ss_pred CCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCc
Q psy6452 499 SSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVY 535 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~ 535 (594)
..++.++++.|.|+ .+...+..++.++.|.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34555666666555 23334445555556666655555
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.072 Score=32.15 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=12.2
Q ss_pred CcccEEEccCCCCcccchHhh
Q psy6452 234 HDIFTVNLSHQDINFVQESMS 254 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f 254 (594)
++|++|+|++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345566666666666665555
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.072 Score=32.15 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=12.2
Q ss_pred CcccEEEccCCCCcccchHhh
Q psy6452 234 HDIFTVNLSHQDINFVQESMS 254 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f 254 (594)
++|++|+|++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345566666666666665555
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.4 Score=28.87 Aligned_cols=18 Identities=61% Similarity=0.763 Sum_probs=12.5
Q ss_pred CCCCEEECcCCCCCccCc
Q psy6452 545 KSLKILDVSYNKLTMLPD 562 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~ 562 (594)
++|+.|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
|
|
| >KOG3864|consensus | Back alignment and domain information |
|---|
Probab=86.56 E-value=0.14 Score=47.80 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=59.0
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCC--CCCcCCCcCccE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSE--LPDFLNFKVLKE 311 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~l~~L~~ 311 (594)
.++.+|-++..|..+.-.-+..++.++.|.+.++.=-+=..+ ..+-...++|+.|+|++| +|++ +.-+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 578899999999988877788889999999888762110001 111124688999999988 6773 445667888888
Q ss_pred EeccCCc
Q psy6452 312 LDISHNN 318 (594)
Q Consensus 312 L~Ls~N~ 318 (594)
|.+.+=.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8877644
|
|
| >KOG4242|consensus | Back alignment and domain information |
|---|
Probab=84.85 E-value=4.9 Score=42.44 Aligned_cols=64 Identities=22% Similarity=0.081 Sum_probs=34.3
Q ss_pred cCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCC---CCChhhhccCCCCcEEECCCCCCC
Q psy6452 307 KVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFE---SMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~---~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
..+.+++|+.|.... +|..+.. ...+..++.++.+...++ ...+..+..-++++..+++.|..+
T Consensus 214 ~~lteldls~n~~Kddip~~~n~---~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNK---KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccccCCCCccchhHHHH---hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 346677777776664 5533221 122234556666665554 233333344557777777777654
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.93 Score=27.41 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=6.2
Q ss_pred CCCEEEcCCCCCCC
Q psy6452 286 NLIVLDLSHNKLSE 299 (594)
Q Consensus 286 ~L~~L~Ls~N~l~~ 299 (594)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 34444444444443
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=82.50 E-value=1.2 Score=26.98 Aligned_cols=18 Identities=56% Similarity=0.698 Sum_probs=12.6
Q ss_pred CCCCCEEECCCCCCCCcc
Q psy6452 257 LTNLTVLDLSHNNHQDIN 274 (594)
Q Consensus 257 l~~L~~L~Ls~N~l~~i~ 274 (594)
+.+|+.|+|++|+|+.++
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 357788888888866543
|
|
| >KOG1947|consensus | Back alignment and domain information |
|---|
Probab=81.71 E-value=0.34 Score=52.43 Aligned_cols=78 Identities=22% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCCCcEEeCcccc-Ccccc-cc-ccCCCCCcEEEccCCC-Cc--ccCccccCCCCCCEEECcCCCCC---ccCcccccCC
Q psy6452 498 LSSIQELHLSNVQ-LNCIP-ED-IGNLICLEKLNISHNK-VY--KLPESFANLKSLKILDVSYNKLT---MLPDGFVMLS 568 (594)
Q Consensus 498 l~~L~~L~Ls~N~-l~~ip-~~-~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~---~ip~~l~~l~ 568 (594)
+++|+.|+++++. ++..- .. ...+++|+.|.+.++. ++ .+-.....+++|++|+|+++... .+......++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4566666666665 44221 11 2235667776666555 44 23223345566777777766332 1222233455
Q ss_pred CCcEEEc
Q psy6452 569 NLTTFYA 575 (594)
Q Consensus 569 ~L~~L~L 575 (594)
+|+.|.+
T Consensus 322 ~l~~l~~ 328 (482)
T KOG1947|consen 322 NLRELKL 328 (482)
T ss_pred chhhhhh
Confidence 5555443
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=81.40 E-value=1.1 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=8.1
Q ss_pred CcceEEcCCCCCCCCC
Q psy6452 337 KHSQSDISHNNFESMP 352 (594)
Q Consensus 337 ~L~~L~Ls~N~l~~i~ 352 (594)
+|+.|++++|+++++|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4455555555555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 594 | ||||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 1e-05 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 1e-05 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-05 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-05 | ||
| 3rfj_A | 279 | Design Of A Binding Scaffold Based On Variable Lymp | 2e-04 | ||
| 3pmh_G | 290 | Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib | 3e-04 | ||
| 1ook_G | 290 | Crystal Structure Of The Complex Of Platelet Recept | 3e-04 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 3e-04 | ||
| 1p9a_G | 290 | Crystal Structure Of N-terminal Domain Of Human Pla | 3e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 3e-04 | ||
| 1g9u_A | 454 | Crystal Structure Of Yopm-leucine Rich Effector Pro | 4e-04 | ||
| 1m0z_A | 290 | Crystal Structure Of The Von Willebrand Factor Bind | 4e-04 | ||
| 1sq0_B | 288 | Crystal Structure Of The Complex Of The Wild-Type V | 4e-04 | ||
| 1m10_B | 290 | Crystal Structure Of The Complex Of Glycoprotein Ib | 4e-04 | ||
| 1p8v_A | 279 | Crystal Structure Of The Complex Of Platelet Recept | 4e-04 | ||
| 1u0n_D | 265 | The Ternary Von Willebrand Factor A1-Glycoprotein I | 5e-04 | ||
| 1gwb_B | 281 | Structure Of Glycoprotein 1b Length = 281 | 5e-04 | ||
| 3p72_A | 269 | Structure Of Platelet Glycoprotein 1b Alpha With A | 5e-04 |
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279 | Back alignment and structure |
|
| >pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290 | Back alignment and structure |
|
| >pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454 | Back alignment and structure |
|
| >pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290 | Back alignment and structure |
|
| >pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288 | Back alignment and structure |
|
| >pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290 | Back alignment and structure |
|
| >pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279 | Back alignment and structure |
|
| >pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265 | Back alignment and structure |
|
| >pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281 | Back alignment and structure |
|
| >pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 5e-35
Identities = 50/341 (14%), Positives = 97/341 (28%), Gaps = 75/341 (21%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMS-QKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ + + +NN + S S QK+ L +LD HNK+ L F L +L +
Sbjct: 546 TGPKIQIFYMGYNN---LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFC-KLVKLDISH 369
+N E +P + SHN + +P + +D S+
Sbjct: 603 DYNQIEEIPEDF---------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653
Query: 370 NQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLL 429
N+I + I + + + +S + + P L
Sbjct: 654 NKIGSEGR------------------NISCSMDDYKGINASTVTLSYNE--IQKFPTELF 693
Query: 430 NHMELKENGVFSNLISLHMQN-------TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ 482
S + ++ + N ++ K + ++
Sbjct: 694 ATG--------SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-------- 737
Query: 483 DFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY----- 535
N L L L + + +S + P N L+ I H +
Sbjct: 738 ---NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 536 --KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ P SL L + N + + + + L
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEK--LTPQLYILD 833
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-33
Identities = 52/364 (14%), Positives = 109/364 (29%), Gaps = 49/364 (13%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
N + +E L +LT ++L + + + + + + L L L+++ N+
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYD-LPELQSLNIACNRG 527
Query: 298 SELPD-----------FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----D 342
++ + +NN E P + + D
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL--------QKMVKLGLLD 579
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIPEW 400
HN + KL L + +NQI+ + + C T ++ +HN IP
Sbjct: 580 CVHNKVRHLEAFGTNV--KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
F + + ++ S + M+ + N ++ +
Sbjct: 638 FNAKSVYVMGSVDFSYN--KIGSEGRNISCSMDDYK---GINASTVTLSYNEIQKFPTEL 692
Query: 461 LKYLKNIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI- 518
I + +N + N L + + + L +L + +D
Sbjct: 693 FATGSPISTIILSNNLMTSIPE----NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748
Query: 519 -GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNK-------LTMLPDGFVMLSNL 570
L L +++S+N P N LK + + + L P G +L
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
Query: 571 TTFY 574
Sbjct: 809 IQLQ 812
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-30
Identities = 52/318 (16%), Positives = 92/318 (28%), Gaps = 77/318 (24%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNF---KVLKE 311
LT L L +N I + E + L SHNKL +P+ N V+
Sbjct: 592 GTNVKLTDLKLDYNQ---IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
+D S+N S + + S +S+N + P L + + +S+N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
+ + + + + L +++ N
Sbjct: 709 MTSIPENSLKPKDGNYKNTYL----------------LTTIDLRF-------------NK 739
Query: 432 M-ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
+ L ++ + L L ++ S N
Sbjct: 740 LTSLSDDFRATTLPYL---------------------SNMDVSY-----------NCFSS 767
Query: 491 LPLSILYLSSIQELHLS-------NVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFAN 543
P L S ++ + N L P I L +L I N + K+ E
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-- 825
Query: 544 LKSLKILDVSYNKLTMLP 561
L ILD++ N +
Sbjct: 826 TPQLYILDIADNPNISID 843
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 6e-27
Identities = 51/344 (14%), Positives = 105/344 (30%), Gaps = 27/344 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L+ +LT L VL ++ + ++LT + + H
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG--RLFGDEELTPDMSEERKHRIR 384
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ L D+ + P + I K +Q N + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
Q KL + +++ S + L ++ +
Sbjct: 445 Q-RLTKLQIIYFANSPFTYD--NIAVDWEDANSDYAKQYENEELSWS--NLKDLTDVELY 499
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
+ P LP +L + EL+ + N Q A I+
Sbjct: 500 NC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY- 557
Query: 476 IDHRKSQDFVNVLWELP--LSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
N L E P S+ + + L + ++ + G + L L + +N+
Sbjct: 558 ----------NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQ 606
Query: 534 VYKLPES-FANLKSLKILDVSYNKLTMLPDGFVM--LSNLTTFY 574
+ ++PE A ++ L S+NKL +P+ F + + +
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 4e-19
Identities = 45/334 (13%), Positives = 91/334 (27%), Gaps = 86/334 (25%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
+T L L+ + V +++ Q LT L VL + + + L D+S
Sbjct: 322 NGRVTGLSLAGFGAKGR--VPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELT-PDMSE 377
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ + F L + D+ + I
Sbjct: 378 ERKHRIRMHY------------------KKMFLDYDQRLNL-------SDLLQDAI---- 408
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ N + + + LK+ + + + +
Sbjct: 409 -----------NRNPEMKPIKKD-----SRISLKDTQIGNLTNRITFISKAIQR------ 446
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L ++ N S Y +N D+ LS
Sbjct: 447 ---LTKLQIIYFAN--------SPFTYDNIAVDWEDAN-------SDYAKQYENEELSWS 488
Query: 497 YLSSIQELHLSNV-QLNCIPEDIGNLICLEKLNISHNK----------VYKLPESFANLK 545
L + ++ L N + +P+ + +L L+ LNI+ N+ +L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 546 SLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQR 577
++I + YN L P + L
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 10/163 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN----HQDINFVQESMSQKLTNLIVLDLS 293
TV LS+ +I + + ++ + LS+N ++ ++ + L +DL
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736
Query: 294 HNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF-E 349
NKL+ L D L +D+S+N F S P + Q D N
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392
P + L++L I N I+ + + L + N
Sbjct: 797 QWPTGIT-TCPSLIQLQIGSNDIRKVDEKLTPQ-LYILDIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 238 TVNLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
T++L + + + L L+ +D+S+N + + L + H +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC---FSSFPTQPLN-SSQLKAFGIRHQR 787
Query: 297 -------LSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DIS 344
L + P L +L I N+ + K + DI+
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK------------VDEKLTPQLYILDIA 835
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQI 372
N S+ + + + + +++
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 512 NCIPEDIGNLICLEKLNISHNK-VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
+ D+ N + L+++ ++P++ L LK+L + T+ F
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 571 TTFYAQRKYWMFLTISLL 588
+RK+ + + +
Sbjct: 373 PDMSEERKHRIRMHYKKM 390
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-33
Identities = 76/386 (19%), Positives = 127/386 (32%), Gaps = 63/386 (16%)
Query: 226 LNCCNKQYHDIF-------TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQE 278
+ + LS I V S L L +L+L + +
Sbjct: 9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDK 66
Query: 279 SMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPY 336
+ L NL +LDL +K+ L F L EL + L +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-------DGYF 119
Query: 337 KHSQS----DISHNNFESMPLCLQ-VHFCKLVKLDISHNQIKILH----KPRCTHTLQTF 387
++ ++ D+S N S+ L L +D S NQI ++ +P TL F
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLH 447
S+ N W + + + + D N + G FSN IS
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSNAISK- 230
Query: 448 MQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS-------- 499
S L +I Q+ L + L LS
Sbjct: 231 --------SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 500 --------SIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKI 549
++ L+L+ ++N I ++ L L+ LN+S+N + +L +F L +
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 550 LDVSYNKLTMLPDG-FVMLSNLTTFY 574
+D+ N + ++ D F L L T
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLD 368
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 73/437 (16%), Positives = 149/437 (34%), Gaps = 55/437 (12%)
Query: 162 LQSIEDDIL-----VQLECLHIDNNKAQEYIVSMNVDRTPGFK---LQNNDNDQNTKVTN 213
+ + + L L + N + F+ L+ D N +
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 214 AMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKL--TNLTVLDLSHNNHQ 271
I H I +I ++ L +++ LDLSH
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-- 277
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVH 329
+ + + + L +L VL+L++NK++++ D F L+ L++S+N ++
Sbjct: 278 -VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE------LY 330
Query: 330 FYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388
D+ N+ + KL LD+ N + +H +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS---IPDIF 387
Query: 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDP--FFEHLPIWLLNHMELKENGVFSNLISL 446
++ N + +P+ + L E + + D F +P +L L
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP----------------HLQIL 431
Query: 447 HM-QNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQEL 504
+ QN + S +++ L N + + LS +Q L
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL------CWDVFEGLSHLQVL 485
Query: 505 HLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG 563
+L++ LN +P + +L L L+++ N++ L + +L+ILD+S N+L
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPD 544
Query: 564 FVMLSNLTTFYAQRKYW 580
+L+ +
Sbjct: 545 V--FVSLSVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 9e-17
Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 41/320 (12%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP------------LCLQVH-FYVHIP 335
+ L+++P + L +S N ++ L L + I
Sbjct: 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 336 YKHSQS-------DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT----HTL 384
+ ++ D+ + + L +L + + L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP---IWLLNHMELKENGVFS 441
++ N + + + LK ++ SS + + L L + +
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 442 NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELP-LSILYLS 499
N + + N + L + L+ S N + +F N + + S++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVL---EILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 500 SIQELHLSNVQLNCIPEDIGNLIC---LEKLNISHNKVYKL-PESFANLKSLKILDVSYN 555
I + ++ + + L++SH V+ L F LK LK+L+++YN
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
K+ + D F L NL
Sbjct: 301 KINKIADEAFYGLDNLQVLN 320
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 20/270 (7%)
Query: 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
I + LS + ++ + ++ LS N ++++ ++ +L +L L+ N
Sbjct: 383 IPDIFLSGNKLV----TLPKINLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQN 436
Query: 296 KLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESM 351
+ S L++L + N + ++ + V H Q ++HN S+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-ELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
P + H L L ++ N++ +L L+ ++ N + F+ L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV----FVSLSV 551
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
L+++ + F + + N + + S VS L ++
Sbjct: 552 LDITH-NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS----LFSLSTEG 606
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSI 501
C + + + + ++ + L++ ++ +
Sbjct: 607 CDEEEVLKSLKFSLFIVCTVTLTLFLMTIL 636
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 58/352 (16%), Positives = 121/352 (34%), Gaps = 50/352 (14%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L I +Q+ + L L LDL N I+F + ++ + LS NKL
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKL 393
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQ 356
LP + +S N E++ + ++F + +P ++ N F S
Sbjct: 394 VTLPKINLT--ANLIHLSENRLENLDI---LYFLLRVP-HLQILILNQNRFSSCSGDQTP 447
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
L +L + N +++ + F + L+ L ++
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCW--DVFEGLSH----------------LQVLYLNH 489
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
LP + +H+ + L L + + ++ +S N++ L+ S +
Sbjct: 490 NY--LNSLPPGVFSHL--------TALRGLSLNSNR--LTVLSHNDLPANLEILDISRNQ 537
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQEL----HLSNVQLNCIPEDIGNLICLEKLNISHN 532
+ D L L ++ EL + N I ++ C+ + S
Sbjct: 538 LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597
Query: 533 KVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583
++ L E + LK L S + + +++ LT + ++
Sbjct: 598 SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 46/350 (13%), Positives = 112/350 (32%), Gaps = 72/350 (20%)
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLN 305
++ + + + ++ + +NN + V+ S+ + + L +L+ +N+L F +
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFP-VETSLQK-MKKLGMLECLYNQLEGKLPAFGS 351
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFC- 360
L L++++N +P ++ +HN + +P
Sbjct: 352 EIKLASLNLAYNQITEIPANF---------CGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ +D S+N+I S++ + + + + + +N+S+
Sbjct: 403 VMSAIDFSYNEIG--------------SVDGKNFDPLDPTPF--KGINVSSINLSNNQ-- 444
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQN-------TAAVMSNVSQLKYLKNIKYLNCS 473
P L + S L S+++ ++ K + ++
Sbjct: 445 ISKFPKELFSTG--------SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 474 NDIDHRKSQDFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
N L +L L + + LS + P N L+ I +
Sbjct: 497 F-----------NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545
Query: 532 NKVY-------KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ + PE SL L + N + + + N++
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLD 593
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 47/318 (14%), Positives = 94/318 (29%), Gaps = 77/318 (24%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL---NFKVLKEL 312
L L+L++N I + + + L +HNKL +P+ + V+ +
Sbjct: 351 SEIKLASLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 313 DISHNNFESMPLCLQVHFYVHIPYKHS-QS-DISHNNFESMPLCLQVHFCKLVKLDISHN 370
D S+N S+ + S ++S+N P L L +++ N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLN 430
+ + K + F + L +++ L
Sbjct: 468 MLTEIPKNSLKDENENFKNTYL----------------LTSIDLRFN--KLTKLS----- 504
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
++ + L L ++ S N +
Sbjct: 505 -----DDFRATTLPYL---------------------VGIDLSY-----------NSFSK 527
Query: 491 LPLSILYLSSIQELHLSNVQLNC-------IPEDIGNLICLEKLNISHNKVYKLPESFAN 543
P L S+++ + N + PE I L +L I N + K+ E
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-- 585
Query: 544 LKSLKILDVSYNKLTMLP 561
++ +LD+ N +
Sbjct: 586 TPNISVLDIKDNPNISID 603
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 59/377 (15%), Positives = 118/377 (31%), Gaps = 88/377 (23%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ----------------K 283
+I FV +++ + LT L + ++ N + ++
Sbjct: 189 GQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 284 LTNLIVLDLSHNKLS-ELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
L +L +++ + +LP FL ++ ++++ N S Q
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE----------------QL 291
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN-IGMK 396
P+ K+ + I +N +K + L +N + K
Sbjct: 292 KDDWQALADAPVG-----EKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGK 345
Query: 397 IPEWFWYQEFLC----LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN-- 450
+P L LN++ +P + +L +
Sbjct: 346 LPA-------FGSEIKLASLNLAYN--QITEIPANFCGFT--------EQVENLSFAHNK 388
Query: 451 -TAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN 508
+ N+ K + + ++ S N+I L + ++ ++LSN
Sbjct: 389 LKY--IPNIFDAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 509 VQLNCIP-EDIGNLICLEKLNISHNK--------VYKLPESFANLKSLKILDVSYNKLTM 559
Q++ P E L +N+ N + E+F N L +D+ +NKLT
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 560 LPDGFVM--LSNLTTFY 574
L D F L L
Sbjct: 503 LSDDFRATTLPYLVGID 519
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 45/333 (13%), Positives = 104/333 (31%), Gaps = 42/333 (12%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL------SELPDFLNFKVL 309
+T L L V +++ Q LT L VL L +
Sbjct: 79 SNGRVTGLSLEGFGASGR--VPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 310 KELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
++ +++ + + + + I+ + + K ++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDL----IKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 369 HNQIKILHK--PRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
N I + K R T L+ F M ++ + E + + ++
Sbjct: 192 SNNITFVSKAVMRLTK-LRQFYMGNSPFVAENIC-----EAWENENSEYAQ---QYKTED 242
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDF 484
+ N +L + + N + + LK L ++ +N + N S +
Sbjct: 243 LKWDN---------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG---ISGEQ 290
Query: 485 VNVLWELPLSILYLSSIQELHLSNVQLNC--IPEDIGNLICLEKLNISHNKVYKLPESFA 542
+ W+ IQ +++ L + + + L L +N++ +F
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L L+++YN++T +P +
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 46/352 (13%), Positives = 108/352 (30%), Gaps = 89/352 (25%)
Query: 240 NLSHQDINFVQES-----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
+L IN + S+ T + NN I FV +++ + LT L + +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN---ITFVSKAVMR-LTKLRQFYMGN 215
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ ++ + + + +++ L +N +
Sbjct: 216 SPFVAENICEAWE-NENSEYA-QQYKTEDL-------------------KWDNLKD---- 250
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +++ + K+P + ++ +N+
Sbjct: 251 -------LTDVEVYNC---------------------PNLTKLPTFLK--ALPEMQLINV 280
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-AVMSNVSQLKYLKNIKYLNCS 473
+ + L + V + +++ + L+ +K + L C
Sbjct: 281 ACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
N L + + L+L+ Q+ IP + G +E L+ +HN
Sbjct: 339 Y-----------NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
Query: 533 KVYKLPESFA--NLKSLKILDVSYNKLT--------MLPDGFVMLSNLTTFY 574
K+ +P F ++ + +D SYN++ L N+++
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 14/165 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-----HQDINFVQESMSQKLTNLIVLDL 292
++NLS+ I+ + + + L+ ++L N + E+ L +DL
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN-TYLLTSIDL 495
Query: 293 SHNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF- 348
NKL++L D L +D+S+N+F P + +Q D N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT-LQTFSMNHN 392
P + L +L I N I+ + + + N
Sbjct: 556 REWPEGIT-LCPSLTQLQIGSNDIRKV--NEKITPNISVLDIKDN 597
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313
+LT L + N+ I V E + N+ VLD+ N + +
Sbjct: 564 LCPSLTQLQIGSND---IRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
Query: 314 ISHNNFESMPLCLQV 328
+ ++ + + C +
Sbjct: 618 LFYDKTQDIRGCDAL 632
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 494 SILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSL 547
S+ + L L + +P+ IG L LE L + + P+ + S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 548 KILDVSYNKLT 558
+
Sbjct: 136 EQKQKMRMHYQ 146
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 4e-32
Identities = 62/353 (17%), Positives = 122/353 (34%), Gaps = 25/353 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ L+ I + L++L L N + ++ L L L+++HN +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETN---LASLENFPIGHLKTLKELNVAHNLI 136
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
F N L+ LD+S N +S+ C + +P + D+S N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQ----------TFSMNHNIGMKIPEWFWYQ 404
+L KL + +N + C L F N+
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L ++E ++ D + + + + + S ++ + L+ +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--TIERVKDFSYNFGWQHLELV 312
Query: 465 KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI---PEDIGNL 521
+ + K F + S + L S++ L LS L+ +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG--FVMLSNLTT 572
L+ L++S N V + +F L+ L+ LD ++ L + + F+ L NL
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 69/367 (18%), Positives = 128/367 (34%), Gaps = 57/367 (15%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + + L VLDLS I +++ Q L++L L L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L++L N S+ + P H ++ +++HN +S L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLE---------NFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 354 CLQVHFC-KLVKLDISHNQIKILHK------PRCTHTLQTFSMNHN-IGMKIPEWFWYQE 405
L LD+S N+I+ ++ + + ++ N + P F +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---K 198
Query: 406 FLCLKELNMSS-------TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
+ L +L + + + L ++ + L E NL + + +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD----KSALEGL 254
Query: 459 SQLKYLKN-IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSI---------QELHLSN 508
L + + YL+ D N + L + + + Q L L N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 509 VQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML---PDGFV 565
+ P L L++L + NK S +L SL+ LD+S N L+
Sbjct: 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 566 MLSNLTT 572
++L
Sbjct: 371 GTTSLKY 377
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 61/345 (17%), Positives = 116/345 (33%), Gaps = 67/345 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ ++ +S + L NLT+ + + LTN+ L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ DF + L++ + F P + N + +V
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--------TFTSNKGGNAFS--EVDL 346
Query: 360 CKLVKLDISHNQIKILHKPRCTHT----LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L LD+S N + + L+ ++ N +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--------------------GVI 386
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-AVMSNVSQLKYLKNIKYLNCSN 474
+ F L L L Q++ MS S L+N+ YL+ S+
Sbjct: 387 TMSSNFLGLE----------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQL--NCIPEDIGNLICLEKLNISH 531
I LSS++ L ++ N +P+ L L L++S
Sbjct: 431 -----------THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
++ +L + F +L SL++L+++ N+L +PDG F L++L +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 1e-20
Identities = 67/400 (16%), Positives = 130/400 (32%), Gaps = 90/400 (22%)
Query: 164 SIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223
++ + L L + E+ N+++ L+ N + ++
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL---CNLTIEEFRLAYLDYYL 271
Query: 224 TELNCCNKQYHDIFTVNLSHQDINFVQE-SMSQKLTNLTVLDLSHNNHQDINFVQESMSQ 282
++ ++ + +L I V++ S + +L +++ +
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--------- 322
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS- 341
KL +L L + NK ++ L+ LD+S N C Q F +
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF----GTTSLKYL 378
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D+S N +M +L LD H+ +K + + +L+
Sbjct: 379 DLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRN--------------- 422
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++S H + NG+F+ L SL
Sbjct: 423 -------LIYLDISH-------------THTRVAFNGIFNGLSSL--------------- 447
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWE--LPLSILYLSSIQELHLSNVQLNCIPEDI- 518
+ L + N E LP L ++ L LS QL +
Sbjct: 448 ------EVLKMAG-----------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 519 GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+L L+ LN++ N++ +P+ F L SL+ + + N
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 9e-17
Identities = 62/357 (17%), Positives = 107/357 (29%), Gaps = 81/357 (22%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN--TKVTNAMDIAMELIDTELN 227
L L Y+ + + + +V + +N
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 228 CCNKQYHDIFTVNLSHQDINFVQESMS---QKLTNLTVLDLSHNNHQDINFVQESMSQKL 284
C Q+ + +L + + L +L LDLS N +S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGT 372
Query: 285 TNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-D 342
T+L LDLS N + + +FL + L+ LD H+N + M F V + ++ D
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLRNLIYLD 427
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
ISH + + L L ++ N + P L+
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------------- 471
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
L L++S +E F++L SL
Sbjct: 472 ------LTFLDLSQ-------------CQLEQLSPTAFNSLSSL---------------- 496
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI 518
+ LN ++ N L +P I L+S+Q++ L +C I
Sbjct: 497 -----QVLNMAS-----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNK 556
S + L LS L + + L+ L++S ++ + ++ +L L L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 557 LTMLPDG-FVMLSNLTT 572
+ L G F LS+L
Sbjct: 88 IQSLALGAFSGLSSLQK 104
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-32
Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 76/355 (21%)
Query: 226 LNCCN--KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ- 282
+ YHD+ + H + + + + + N + + + + +
Sbjct: 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDA 78
Query: 283 KLTNLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
+ L+L L + PD L+ + I +P +Q
Sbjct: 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-------------- 124
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
F L L ++ N ++ L +I
Sbjct: 125 ----------------QFAGLETLTLARNPLRALPA--------------SIA------- 147
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV-SQ 460
L+EL++ + P LP L + E+ NL SL ++ T + ++ +
Sbjct: 148 ---SLNRLRELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPAS 201
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV-QLNCIPEDIG 519
+ L+N+K L N + L L +I +L ++EL L L P G
Sbjct: 202 IANLQNLKSLKIRN-----------SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 520 NLICLEKLNISH-NKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLTT 572
L++L + + + LP L L+ LD+ L+ LP L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 11/145 (7%)
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLN---CSNDIDHRKSQDFV------NVLWEL 491
S +L+ Q + A+ L + + + S + L
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71
Query: 492 PLSILYLSSI--QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549
+ + L L +V L P+ L L+ + I + +LP++ L+
Sbjct: 72 ADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131
Query: 550 LDVSYNKLTMLPDGFVMLSNLTTFY 574
L ++ N L LP L+ L
Sbjct: 132 LTLARNPLRALPASIASLNRLRELS 156
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 21/121 (17%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC 523
L + L + P LS +Q + + L +P+ +
Sbjct: 80 QPGRVALELRS-----------VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG 128
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSY-NKLTMLPDGF---------VMLSNLTTF 573
LE L ++ N + LP S A+L L+ L + +LT LP+ L NL +
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 574 Y 574
Sbjct: 189 R 189
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-32
Identities = 48/358 (13%), Positives = 119/358 (33%), Gaps = 88/358 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++ + S+ Q N+ LDLS N ++ + + T L +L+LS N L E
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
D + L+ LD+++N + + + + ++NN +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVGPSIE----------TLHAANNNISRVSCSR---G 119
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ +++N+I +L ++ L++
Sbjct: 120 QGKKNIYLANNKITMLRD-------LDEGCRSR----------------VQYLDLKL--- 153
Query: 420 FFEHLPIWLLNHM-ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
N + + + ++ +L ++LN
Sbjct: 154 ----------NEIDTVNFAELAASSDTL---------------------EHLNLQY---- 178
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N ++++ ++ + ++ L LS+ +L + + + + +++ +NK+ +
Sbjct: 179 -------NFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 539 ESFANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594
++ ++L+ D+ N L D F + T Q + C + L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 48/340 (14%), Positives = 103/340 (30%), Gaps = 93/340 (27%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LS ++ + + T L +L+LS N + + + L+ L LDL++N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLSTLRTLDLNNNYV 92
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
EL + ++ L ++NN + Q +++N +
Sbjct: 93 QELLVGPS---IETLHAANNNISR------------VSCSRGQGKKNIYLANNKITMLRD 137
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+ ++ LD+ N+I ++ + T L+ LN
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----------------------LEHLN 175
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ N I +V +K L+ S
Sbjct: 176 LQ-------------------------YNFI-----------YDVKGQVVFAKLKTLDLS 199
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
+ N L + + + + L N +L I + + LE ++ N
Sbjct: 200 S-----------NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTF 573
+ K+ ++ V+ + L + T
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIG-NLICLEKLNISHNKVYKLP-ESFANLKSLK 548
+ + + +++ L + + +++L++S N + ++ A L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L++S N L D LS L T
Sbjct: 62 LLNLSSNVLYETLD-LESLSTLRTLD 86
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 45/156 (28%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC 229
+++ L + N+ I ++N L L
Sbjct: 143 RSRVQYLDLKLNE----IDTVNFAELAA-SSDT------------------L--EHL--- 174
Query: 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
NL + I V+ + L LDLS N + F+ +
Sbjct: 175 ----------NLQYNFIYDVKGQVV--FAKLKTLDLSSNK---LAFMGPEFQS-AAGVTW 218
Query: 290 LDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPL 324
+ L +NKL + + L+ D+ N F L
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 7e-31
Identities = 59/353 (16%), Positives = 126/353 (35%), Gaps = 71/353 (20%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
V++ Q + L N ++ ++ + + ++ + +L+L+ ++
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMP 352
E+ F +++L + N +P + +++ + N+ S+P
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---------FQNVPLLTVLVLERNDLSSLP 133
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
+ + KL L +S+N ++ + TF + L+ L
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIED-------DTFQATTS----------------LQNL 170
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+SS N + + + +L ++ +S L ++ L+
Sbjct: 171 QLSS-------------NRLTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDA 212
Query: 473 S-NDIDHRKSQDFVNVLWELPLS---------ILYLSSIQELHLSNVQLNCIPEDI-GNL 521
S N I+ + V L L L +L + E+ LS +L I +
Sbjct: 213 SHNSINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
LE+L IS+N++ L + +LK+LD+S+N L + L Y
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 61/338 (18%), Positives = 121/338 (35%), Gaps = 69/338 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NL+ I + + L + N I ++ + Q + L VL L N L
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S LP F N L L +S+NN E I + F++
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLER---------------------IEDDTFQATT--- 165
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L L +S N++ + +L ++++N+ + + ++EL+ S
Sbjct: 166 -----SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIP------IAVEELDAS 213
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + V L L +Q+ +++ + L + ++ S
Sbjct: 214 H-------------NSINVVRGPVNVELTILKLQHNN--LTDTAWLLNYPGLVEVDLSY- 257
Query: 476 IDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N L ++ + ++ L++SN +L + + L+ L++SHN +
Sbjct: 258 ----------NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLT 571
+ + L+ L + +N + L L NLT
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 8e-24
Identities = 54/322 (16%), Positives = 115/322 (35%), Gaps = 45/322 (13%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDI 314
L V H + Q + L N ++ ++ + +LP +F+ ++ L++
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ E + F Q + N +P + + L L + N +
Sbjct: 77 NDLQIEEID---TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 374 ILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
L + T L T SM++N +I + + Q L+ L +SS N
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSS-------------NR 176
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
+ + + +L ++ +S L ++ L+ S+ N + +
Sbjct: 177 LTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASH-----------NSINVV 220
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKIL 550
+ + L L + L + N L ++++S+N++ K+ F ++ L+ L
Sbjct: 221 RGPVN--VELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277
Query: 551 DVSYNKLTMLPDGFVMLSNLTT 572
+S N+L L + L
Sbjct: 278 YISNNRLVALNLYGQPIPTLKV 299
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 97/293 (33%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-------------HQDINFVQESMSQKL 284
T+++S+ ++ +++ Q T+L L LS N H ++++ S
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
+ LD SHN ++ + + L L + HNN
Sbjct: 205 IAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTA--------------------- 242
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFW 402
+ P LV++D+S+N+++ + L+ +++N + + +
Sbjct: 243 --WLLNYP--------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
L K L++S NH+ E
Sbjct: 293 PIPTL--KVLDLSH-------------NHLLHVERNQPQ--------------------- 316
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
++ L + N + L LS +++ L LS+ +C
Sbjct: 317 -FDRLENLYLDH-----------NSIVTLKLSTH--HTLKNLTLSHNDWDCNS 355
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+S+ + + + L VLDLSHN+ + V+ + Q L L L HN +
Sbjct: 278 YISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQPQ-FDRLENLYLDHNSIVT 332
Query: 300 LPDFLNFKVLKELDISHNNFESMPL 324
L LK L +SHN+++ L
Sbjct: 333 LK-LSTHHTLKNLTLSHNDWDCNSL 356
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LSH + V+ + Q L L L HN+ + L L LSHN
Sbjct: 299 VLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHNDW 351
Query: 298 SELPDFLNFKVLKELDISHNN 318
F+ + + +
Sbjct: 352 DCNSLRALFRNVARPAVDDAD 372
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 77/357 (21%), Positives = 138/357 (38%), Gaps = 71/357 (19%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDI-------------NFVQESMSQKL 284
+ L++ ++ + E +L L S N+ ++ N +++S
Sbjct: 75 ELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DI 343
L L +S+N+L +LP+ N LK +D+ +N+ + +P +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP----------PSLEFIAA 180
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWY 403
+N E +P L + +N +K L P +L++ +NI ++PE
Sbjct: 181 GNNQLEELPELQN--LPFLTAIYADNNSLKKL--PDLPLSLESIVAGNNILEELPE---L 233
Query: 404 QEFLCLKELNMSSTDPFFEHLPIWL--LNHMELKEN------GVFSNLISLHMQNTAAVM 455
Q L + + + LP L + +++N + +L L +
Sbjct: 234 QNLPFLTTIYADNNL--LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN---- 287
Query: 456 SNVSQLKYL-KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI 514
S L L N+ YLN S+ N + L S++EL++SN +L +
Sbjct: 288 -IFSGLSELPPNLYYLNASS-----------NEIRSLCDL---PPSLEELNVSNNKLIEL 332
Query: 515 PEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
P LE+L S N + ++PE NLK L V YN L PD + +L
Sbjct: 333 PALPPR---LERLIASFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPESVEDLR 383
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 67/353 (18%), Positives = 117/353 (33%), Gaps = 80/353 (22%)
Query: 256 KLTNLTVLDLSHNNHQDI----------NFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
+ + T + + + V L+L++ LS LP+
Sbjct: 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP 91
Query: 306 FKVLKELDISHNNFESMP-----------LCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
L+ L S N+ +P + +P +S+N E +P
Sbjct: 92 H--LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +D+ +N +K L P +L+ + +N ++PE Q L +
Sbjct: 150 QNSS--FLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEELPEL---QNLPFLTAIYA 202
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ + LP +L S+ N + + +L+ L + + N
Sbjct: 203 DNNS--LKKLPDLP------------LSLESIVAGNNI--LEELPELQNLPFLTTIYADN 246
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N+L LP S++ L++ + L +PE + L L++S N
Sbjct: 247 -----------NLLKTLPDLP---PSLEALNVRDNYLTDLPELPQS---LTFLDVSENIF 289
Query: 535 YKLPESFANLK-----------------SLKILDVSYNKLTMLPDGFVMLSNL 570
L E NL SL+ L+VS NKL LP L L
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL 342
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 9e-22
Identities = 54/311 (17%), Positives = 106/311 (34%), Gaps = 74/311 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L LT + +N+ + + +L + +N L ELP+ N L +
Sbjct: 193 NLPFLTAIYADNNS-------LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N +++P ++ N +P Q L LD+S N L
Sbjct: 246 NNLLKTLPDLPP---------SLEALNVRDNYLTDLPELPQ----SLTFLDVSENIFSGL 292
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
L + + N + + L+ELN+S+ LP
Sbjct: 293 --SELPPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNN--KLIELPALP------- 336
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNCSNDIDHRKSQDFVNVLWEL 491
L L + L + +N+K L+ N L E
Sbjct: 337 -----PRLERLIASF--------NHLAEVPELPQNLKQLHVEY-----------NPLREF 372
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551
P S+++L +++ L +PE NL ++L++ N + + P+ +S++ L
Sbjct: 373 PDIP---ESVEDLRMNS-HLAEVPELPQNL---KQLHVETNPLREFPDI---PESVEDLR 422
Query: 552 VSYNKLTMLPD 562
++ ++ +
Sbjct: 423 MNSERVVDPYE 433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-20
Identities = 58/295 (19%), Positives = 102/295 (34%), Gaps = 59/295 (20%)
Query: 284 LTNLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
T L + L+E+P N K E + + +E +
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-------------GNGE 56
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ CL +L++++ + L P L++ + N ++PE
Sbjct: 57 QREMAVSRLRDCLDRQ---AHELELNNLGLSSL--PELPPHLESLVASCNSLTELPE--- 108
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
LK L + + N L + + L L + N + + +L+
Sbjct: 109 --LPQSLKSLLVDN------------NNLKALSD--LPPLLEYLGVSNNQ--LEKLPELQ 150
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+K ++ N N L +LP S++ + N QL +PE + NL
Sbjct: 151 NSSFLKIIDVDN-----------NSLKKLPDL---PPSLEFIAAGNNQLEELPE-LQNLP 195
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577
L + +N + KLP+ SL+ + N L LP+ L LTT YA
Sbjct: 196 FLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADN 246
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPESFANL----- 544
+ + + +QE + L +P + N+ + + ++ + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 545 --------KSLKILDVSYNKLTMLPDGFVMLSNL 570
+ L+++ L+ LP+ L +L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESL 96
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDI------------NFVQESMSQKLTNLIVLDLSHNKLS 298
+ + NL L + +N ++ N + + NL L + N L
Sbjct: 350 AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 299 ELPDFLNFKVLKELDISHNNFESMP 323
E PD +++L ++
Sbjct: 410 EFPDIPES--VEDLRMNSERVVDPY 432
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 3e-30
Identities = 67/362 (18%), Positives = 117/362 (32%), Gaps = 77/362 (21%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+ + + + + ++T L + NN + L L++S N+L
Sbjct: 44 VLNVGESGLTTLPDCL---PAHITTLVIPDNNLTSL-------PALPPELRTLEVSGNQL 93
Query: 298 SELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ LP L + ++P L + I N S+P
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPALPSGLC------------KLWIFGNQLTSLP---- 137
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
V L +L +S NQ+ L P L +N +P L+EL++S
Sbjct: 138 VLPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSD 190
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNC 472
LP S L L N ++L L +K L
Sbjct: 191 NQ--LASLPTLP------------SELYKLWAYN--------NRLTSLPALPSGLKELIV 228
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
S N L LP+ S ++EL +S +L +P L L++ N
Sbjct: 229 SG-----------NRLTSLPVLP---SELKELMVSGNRLTSLPMLPSGL---LSLSVYRN 271
Query: 533 KVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLM 592
++ +LPES +L S +++ N L+ + Y+ + +
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 593 GL 594
Sbjct: 332 RA 333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
LN + L LP + + I L + + L +P L
Sbjct: 38 LNNGNAVLNVGE-----------SGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPEL- 83
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLS 568
L +S N++ LP L L I L LP G L
Sbjct: 84 --RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 72/435 (16%), Positives = 135/435 (31%), Gaps = 98/435 (22%)
Query: 162 LQSIEDDIL--VQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219
+ I+D ++L L + N I+ + G + + N
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDI------ 273
+++ + I L++ + L N++ + L+ + + +
Sbjct: 253 SIMEGLCDV------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306
Query: 274 ----------NFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
+++ + L L L L+ NK S + L LD+S N
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 324 LCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382
C + D+S N M +L LD H+ +K + +
Sbjct: 367 CCSYSDL----GTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEFSAFL 421
Query: 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442
+L+ L L++S + ++ +G+F
Sbjct: 422 SLEK----------------------LLYLDISY-------------TNTKIDFDGIFLG 446
Query: 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQ 502
L + L L + ++ D+ S F N +++
Sbjct: 447 L---------------TSLNTL----KMAGNSFKDNTLSNVFAN-----------TTNLT 476
Query: 503 ELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTML 560
L LS QL I + L L+ LN+SHN + L S + L SL LD S+N++
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 561 PDG-FVMLSNLTTFY 574
+L F
Sbjct: 537 KGILQHFPKSLAFFN 551
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 71/371 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + ++ + L LDLS I +++ L +L L L+ N +
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
F L+ L S+ P + +++HN S
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLE---------SFPIGQLITLKKLNVAHNFIHSCK- 144
Query: 354 CLQVHFC---KLVKLDISHNQIKILHK------PRCTHTLQTFSMNHN-IGMKIPEWFWY 403
L +F LV +D+S+N I+ + + M+ N I + F
Sbjct: 145 -LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-- 201
Query: 404 QEFLCLKELNMSS-------TDPFFEHLP-----------IWLLNHMELKENGVFSNLIS 445
+ + L EL + ++L ++E+ E + L
Sbjct: 202 -QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 446 LHMQ-----NTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
+ + T ++ + L N+ ++ + + L +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-----------VSIKYLE-DVPKHFK 308
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
Q L + QL P +L L+ L ++ NK + L SL LD+S N L+
Sbjct: 309 WQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFS 365
Query: 561 PDGFVMLSNLT 571
Sbjct: 366 GCCSYSDLGTN 376
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 59/357 (16%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ I LT+L L + ++ +L L L+++HN +
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETK---LASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 300 LPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
F N L +D+S+N ++ I+ N+ + L+
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQT---------------------ITVNDLQF----LR 177
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ + LD+S N I + + L ++ N Q L +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQ-DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQ-----NTAAVMSNVSQLKYLKNIKY 469
++E+ E + L + + T ++ + L N+
Sbjct: 237 I-------LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289
Query: 470 LNCS-NDIDHRKSQDFVNVLWELPLSILYLSSI--------QELHLSNVQLNCIPEDIGN 520
++ + I + + L + L + L L+ + + I
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS-ISFKKVA 348
Query: 521 LICLEKLNISHNKVYKLPE---SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L L++S N + S SL+ LD+S+N ++ F+ L L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++S+ + + + LT+L L ++ N+ + ++ TNL LDLS +L +
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSF--KDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
+ F L+ L++SHNN + Y S D S N E+
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSH---------YNQLYSLSTLDCSFNRIETSKG 538
Query: 354 CLQVHFCKLVKLDISHNQI 372
LQ L ++++N +
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 53/328 (16%), Positives = 97/328 (29%), Gaps = 97/328 (29%)
Query: 240 NLSHQDINFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+LS ++F +L LDLS N + + L L LD H+ L
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHSTL 411
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ + FL+ + L LDIS+ N + F +
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKI---------------------DFDGIFLGLT-- 448
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFWYQEFLCLK 410
L L ++ N K T L ++ + F L+
Sbjct: 449 ------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQ 500
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
LNMS N++ ++ ++ L SL L
Sbjct: 501 LLNMSH-------------NNLLFLDSSHYNQLYSL---------------------STL 526
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529
+CS N + + + S+ +L+N + CI E L+ +
Sbjct: 527 DCSF-----------NRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF---LQWVKE 572
Query: 530 SHNKVYKLPE----SFANLKSLKILDVS 553
+ + + + + + +LD +
Sbjct: 573 QKQFLVNVEQMTCATPVEMNTSLVLDFN 600
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 76/235 (32%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
+P + +D+S N +KIL +FS
Sbjct: 17 QCMDQKLSKVPDDI---PSSTKNIDLSFNPLKILKS-------YSFSNFSE--------- 57
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L+ L++S +E E+ + L
Sbjct: 58 -------LQWLDLSR-------------CEIETIEDKAWHGL------------------ 79
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPED-IG 519
++ L + N + L+S++ L +L + IG
Sbjct: 80 ---HHLSNLILTG-----------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125
Query: 520 NLICLEKLNISHNKVY--KLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
LI L+KLN++HN ++ KLP F+NL +L +D+SYN + + L
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+SH ++ F+ S +L +L+ LD S N I + + +L +L++N +
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR---IETSKGILQHFPKSLAFFNLTNNSV 557
Query: 298 S---ELPDFLNF 306
+ E FL +
Sbjct: 558 ACICEHQKFLQW 569
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 61/355 (17%), Positives = 130/355 (36%), Gaps = 39/355 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I ++ + NL VL L + IN ++ L +L LDLS N LS
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHF-----YVHIPYKHSQSDISHNNFESMP 352
L F LK L++ N ++++ + + I + S+I +F +
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 353 LCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHN----IGMKIPEWFWYQEF 406
L +L+I ++ + + +++ + + + +
Sbjct: 149 --------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELK-ENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465
L L++ N++ + +L V ++ + + +S++++
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICL 524
LN D + +S L + +I+ LH+ L + L +
Sbjct: 261 C--TLNGLGDFNPSESDVVSE------LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 525 EKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDG----FVMLSNLTTFY 574
+++ + ++KV+ +P +LKSL+ LD+S N + +L T
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 61/410 (14%), Positives = 124/410 (30%), Gaps = 97/410 (23%)
Query: 160 HELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219
L I DIL + L + + + S ++ + + + +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 220 ELIDTELNCCNKQYHDI---FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFV 276
+L+ L ++ D + + + + V E + + L + + +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---LFYD 301
Query: 277 QESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334
++ L + + + ++K+ +P + K L+ LD+S N L
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK---- 357
Query: 335 PYKHSQS----DISHNNFESMPLCLQV--HFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388
S +S N+ SM ++ L LDIS N + +
Sbjct: 358 --GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD--------SCQ 407
Query: 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHM 448
++ LN+SS + + + + L L +
Sbjct: 408 WPEK----------------MRFLNLSS-------------TGIRVVKTCIPQTLEVLDV 438
Query: 449 QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN 508
N N L L L +QEL++S
Sbjct: 439 SN-----------------------------------NNLDSFSLF---LPRLQELYISR 460
Query: 509 VQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+L +P+ L + IS N++ +P+ F L SL+ + + N
Sbjct: 461 NKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 46/355 (12%), Positives = 107/355 (30%), Gaps = 45/355 (12%)
Query: 240 NLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
NL + + LTNL L + + + ++ LT+L L++ L
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALSLR 161
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ + + L + + + ++ N
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS-----SVRYLELRDTNLARFQFSPL 216
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ + +L L+ + F L + N S
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL---SEVEFDDCTLNGLGDFNPSE 273
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL--------------- 461
+D L + + ++ + + + +++ V ++
Sbjct: 274 SD-VVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 462 KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIG- 519
++LK++++L+ S N + V + S+Q L LS L + +
Sbjct: 331 QHLKSLEFLDLSENLM--------VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382
Query: 520 --NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
L L L+IS N + +P+S + ++ L++S + ++ L
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEV 435
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 59/372 (15%), Positives = 125/372 (33%), Gaps = 58/372 (15%)
Query: 238 TVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
T+ + + + + ++ LT+L L++ + + Q + + ++ L L ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALS---LRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 297 LSELPD--FLNFKVLKELDISHNNFESMP---LCLQVHFYVHIPYKHSQSDISHNNFESM 351
+ L + ++ L++ N L + S ++ +F +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 352 PLCLQ--VHFCKLVKLDISHNQIKILHKPRCTH----------TLQTFSMNHNIGMKIPE 399
L+ + ++ D + N + + T++ +
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 400 WFWYQEFLCLKELNMSS------TDPFFEHLP----IWL----LNHMELKENGVFSNLIS 445
Y +K + + + F +HL + L + LK + S
Sbjct: 304 TV-YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 446 LHM----QNTAAVMSNVSQL-KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
L QN M ++ LKN+ L+ S N +P S +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-----------NTFHPMPDSCQWPEK 411
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
++ L+LS+ + + I LE L++S+N + L L+ L +S NKL L
Sbjct: 412 MRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTL 466
Query: 561 PDGFVMLSNLTT 572
PD + L
Sbjct: 467 PDA-SLFPVLLV 477
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 7e-21
Identities = 50/286 (17%), Positives = 88/286 (30%), Gaps = 35/286 (12%)
Query: 135 ITNNSVEMDENTVKTEALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDR 194
+ + + + R + +D L L + + + +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-- 285
Query: 195 TPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMS 254
++ Q + +L+ + + + + + V S S
Sbjct: 286 ---VTIRRLHIPQF------------YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD----FLNFKVLK 310
Q L +L LDLS N + + +L L LS N L + L K L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHN 370
LDIS N F MP P K ++S + C+ L LD+S+N
Sbjct: 391 SLDISRNTFHPMP------DSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNN 441
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ LQ ++ N +P+ F L + +S
Sbjct: 442 NLDSF--SLFLPRLQELYISRNKLKTLPDASL---FPVLLVMKISR 482
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 51/346 (14%), Positives = 111/346 (32%), Gaps = 47/346 (13%)
Query: 260 LTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHN 317
V D + I S + LDLS NK++ + D L+ L + +
Sbjct: 7 SGVCDGRSRSFTSIP------SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 318 NFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ + + D+S N+ S+ L L++ N + L
Sbjct: 61 RINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 377 KPRCTH---TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS------TDPFFEHLPIW 427
LQT + + + L EL + + + +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD- 173
Query: 428 LLNHMELKENG----------VFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
++H+ L + + S++ L +++T S L + +
Sbjct: 174 -IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 478 HRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC---------LEKLN 528
+ + N L +L IL LS ++ + L +++ + +L+
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 529 ISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
I ++ ++ L+ +K + V +K+ ++P L +L
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 6e-29
Identities = 71/346 (20%), Positives = 118/346 (34%), Gaps = 43/346 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
S + +Q + +L NLT LDL+ I ++ E Q L L L+ N L
Sbjct: 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLIF 95
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
+ + K LK L S+ IP + ++ + N+ S+ L
Sbjct: 96 MAETALSGPKALKHLFFIQTGISSID---------FIPLHNQKTLESLYLGSNHISSIKL 146
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTH----TLQTFSMNHNIGMKIPEWFWYQEFLCL 409
KL LD +N I L K + T + ++N N I + +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVF 204
Query: 410 KELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469
+ LN T + ++ G F ++ + ++ +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI----N 260
Query: 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529
L + + S F S +QEL L+ L+ +P + L L+KL +
Sbjct: 261 LQ-KHYFFNISSNTFHC-----------FSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKL--TMLPDGFVMLSNLTT 572
S NK L + S +N SL L + N + L NL
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 60/347 (17%), Positives = 125/347 (36%), Gaps = 85/347 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L+ ++ + + L+ L L LS N + + + +L L + N
Sbjct: 282 ELDLTATHLSELPSGLV-GLSTLKKLVLSANK---FENLCQISASNFPSLTHLSIKGNTK 337
Query: 298 S-ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFES 350
EL N + L+ELD+SH++ E+ C ++ ++S+N S
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-------RNLSHLQSLNLSYNEPLS 390
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ +L LD++ ++K+ F H LK
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQS------PFQNLHL----------------LK 428
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
LN+S + +++ +F L +L ++L
Sbjct: 429 VLNLSH-------------SLLDISSEQLFDGLPAL---------------------QHL 454
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNI 529
N F + S+ L ++ L LS L+ I + +L + +++
Sbjct: 455 NLQG-------NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 530 SHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
SHN++ E+ ++LK + L+++ N ++++ +LS T
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 83/328 (25%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
LS + + + +LT L + N + + L NL LDLSH+ +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTK--RLELGTGCLENLENLRELDLSHDDIET 364
Query: 300 LPD----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
N L+ L++S+N + F+ P
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEP---------------------LSLKTEAFKECP--- 400
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
+L LD++ ++K+ F H LK LN+S
Sbjct: 401 -----QLELLDLAFTRLKVKDAQS------PFQNLHL----------------LKVLNLS 433
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN---TAAVMSNVSQLKYLKNIKYLNC 472
+ + L + + L L++Q + + L+ L ++ L
Sbjct: 434 HS--LLDISSEQLFDGL--------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 473 S-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
S D+ F + L + + LS+ +L + + + LN++
Sbjct: 484 SFCDLSSIDQHAFTS-----------LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKLT 558
N + + S L + +++ N L
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLD 560
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NLSH ++ E + L L L+L N+ N + + Q L L +L LS L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S + F + K++ +D+SHN S K +++ N+ + L
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTS------SSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 356 QVHFCKLVKLDISHNQI 372
+ +++ N +
Sbjct: 543 LPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 54/334 (16%), Positives = 106/334 (31%), Gaps = 96/334 (28%)
Query: 238 TVNLSHQDINFVQES--MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++LSH DI + L++L L+LS+N ++ ++ L +LDL+
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFT 410
Query: 296 KLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
+L F N +LK L++SH+ S F+ +P
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLL---------------------DISSEQLFDGLP 449
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCT-----HTLQTFSMNHN-IGMKIPEWFWYQEF 406
L L++ N + + L+ ++ + F
Sbjct: 450 --------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSL 499
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466
+ +++S N + S+L +
Sbjct: 500 KMMNHVDLSH-------------NRLTSSSIEALSHLKGI-------------------- 526
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLE 525
YLN ++ N + + S+L LS + ++L L+C N+ LE
Sbjct: 527 --YLNLAS-----------NHISIILPSLLPILSQQRTINLRQNPLDC---TCSNIYFLE 570
Query: 526 KLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT 558
+ K+ + N L+ + +S L+
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 502 QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML 560
+ + N+ LN IP + N E L S N + + +F+ L +L LD++ ++ +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 561 PDG-FVMLSNLTTFY 574
+ F L T
Sbjct: 73 HEDTFQSQHRLDTLV 87
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 61/338 (18%), Positives = 121/338 (35%), Gaps = 69/338 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NL+ I + + L + N I ++ + Q + L VL L N L
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S LP F N L L +S+NN E I + F++
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLER---------------------IEDDTFQATT--- 171
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L L +S N++ + +L ++++N+ + + ++EL+ S
Sbjct: 172 -----SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAI------PIAVEELDAS 219
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + V L L +Q+ +++ + L + ++ S
Sbjct: 220 H-------------NSINVVRGPVNVELTILKLQHNN--LTDTAWLLNYPGLVEVDLSY- 263
Query: 476 IDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N L ++ + ++ L++SN +L + + L+ L++SHN +
Sbjct: 264 ----------NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLT 571
+ + L+ L + +N + L L NLT
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 7e-28
Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 87/350 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V + + + ++ + +L+L+ I + + L + N +
Sbjct: 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
LP F N +L L + N+ S + F + P
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSS---------------------LPRGIFHNTP--- 147
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
KL L +S+N ++ + TF + L+ L +S
Sbjct: 148 -----KLTTLSMSNNNLERIED-------DTFQATTS----------------LQNLQLS 179
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-N 474
S N + + + +L ++ +S L ++ L+ S N
Sbjct: 180 S-------------NRLTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASHN 221
Query: 475 DIDHRKSQDFVNVLWELPLS---------ILYLSSIQELHLSNVQLNCIPEDI-GNLICL 524
I+ + V L L L +L + E+ LS +L I + L
Sbjct: 222 SINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 525 EKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
E+L IS+N++ L + +LK+LD+S+N L + L Y
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 48/280 (17%), Positives = 103/280 (36%), Gaps = 71/280 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+++S+ ++ +++ Q T+L L LS N ++ + +L ++S+N L
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL------SLIPSLFHANVSYNLL 204
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
S L + ++ELD SHN+ + + V + + HNN +
Sbjct: 205 STLAIPIA---VEELDASHNSINVVRGPVNVEL--------TILKLQHNNLTDTAWL--L 251
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
++ LV++D+S+N+++ + L+ +++N + + + L K L++S
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL--KVLDLS 309
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
NH+ E ++ L +
Sbjct: 310 H-------------NHLLHVERNQPQ----------------------FDRLENLYLDH- 333
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
N + L LS +++ L LS+ +C
Sbjct: 334 ----------NSIVTLKLSTH--HTLKNLTLSHNDWDCNS 361
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-28
Identities = 58/348 (16%), Positives = 117/348 (33%), Gaps = 45/348 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS---QKLTNLIVLDLSHNK 296
++ +++ L L L + +++ + + LTN+ L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 297 LSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ + DF + L++ + F P ++ + + +
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL----------KRLTFTSNKGGNAFSE 343
Query: 357 VHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
V L LD+S N + T +L+ ++ N + + F L+ L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHL 401
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ ++ + + + NLI L + +T ++ L +++ L
Sbjct: 402 DFQHSN-LKQMSEFSVFLSL--------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 473 SNDIDHRKSQDFVNVLWE--LPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNI 529
+ N E LP L ++ L LS QL + +L L+ LN+
Sbjct: 453 AG-----------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 530 SHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFV--MLSNLTTFY 574
SHN + L + L SL++LD S N + + S+L
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 57/332 (17%), Positives = 114/332 (34%), Gaps = 49/332 (14%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + + L VLDLS I +++ Q L++L L L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L++L N S+ + P H ++ +++HN +S L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLE---------NFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 354 CLQV-HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
+ L LD+S N+I+ ++ + H + L L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYC-------TDLRVLHQMP------------LLNLSL 182
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
++S + + L + + +N SL++ T ++ L ++ N
Sbjct: 183 DLSLN--PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
N KS L L + L+ + + L+ I + L + ++
Sbjct: 241 GNLEKFDKSA-LEG-LCNLTIEEFRLAYL------DYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 533 KVYKLPESFANLKSLKILDVSYNKLTMLPDGF 564
+ ++ F+ + L++ K P
Sbjct: 293 TIERVK-DFSYNFGWQHLELVNCKFGQFPTLK 323
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 56/332 (16%), Positives = 101/332 (30%), Gaps = 80/332 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ L +L LDLS N +S T+L LDLS N +
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT 387
Query: 300 LP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-------DISHNNFESM 351
+ +FL + L+ LD H+N + M + S DISH +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQM-----------SEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFWYQEFL 407
+ L L ++ N + P L ++ + P F
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLS 494
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467
L+ LNMS N+ + + L SL
Sbjct: 495 SLQVLNMSH-------------NNFFSLDTFPYKCLNSL--------------------- 520
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPEDIGNLICLE 525
+ L+ S N + L + SS+ L+L+ C + L+
Sbjct: 521 QVLDYSL-----------NHIMTSKKQELQHFPSSLAFLNLTQNDFAC---TCEHQSFLQ 566
Query: 526 KLNISHNKVYKLPE----SFANLKSLKILDVS 553
+ + ++ + ++ + + +L ++
Sbjct: 567 WIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 26/171 (15%)
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
K L++S HL + F L L + + L ++
Sbjct: 30 TKNLDLSFN--PLRHLGSYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 469 YLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEK 526
L N I F LSS+Q+L L + IG+L L++
Sbjct: 80 TLILTGNPIQSLALGAFSG-----------LSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 527 LNISHNK--VYKLPESFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFY 574
LN++HN +KLPE F+NL +L+ LD+S NK+ + +L +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+SH + + + L +L VLD S N+ ++ + ++L L+L+ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDF 555
Query: 298 S---ELPDFLNF-KVLKELDISHNNFE 320
+ E FL + K ++L + E
Sbjct: 556 ACTCEHQSFLQWIKDQRQLLVEVERME 582
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 52/364 (14%), Positives = 120/364 (32%), Gaps = 82/364 (22%)
Query: 224 TELNCCNKQYHDIFT-------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFV 276
L + IF + Q + ++L ++T L ++ I +
Sbjct: 3 ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI 62
Query: 277 QESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPY 336
+ LTNL L+L+ N+++++ N L L I N +
Sbjct: 63 E-----YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS------------- 104
Query: 337 KHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
+++ L +L ++ + I + + + ++ N +
Sbjct: 105 ----------ALQNLT--------NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146
Query: 397 IPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452
L L ++ + +L +L SL +
Sbjct: 147 DLSPL--SNMTGLNYLTVTESKVKDVTPIANLT----------------DLYSLSLNYNQ 188
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN 512
+ ++S L L ++ Y N + ++ + ++ + L + N ++
Sbjct: 189 --IEDISPLASLTSLHYFTAYV-----------NQITDIT-PVANMTRLNSLKIGNNKIT 234
Query: 513 CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ + NL L L I N++ + + +L LK+L+V N+++ + LS L +
Sbjct: 235 DLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNS 291
Query: 573 FYAQ 576
+
Sbjct: 292 LFLN 295
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 7e-23
Identities = 56/324 (17%), Positives = 114/324 (35%), Gaps = 75/324 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L LT L + N DI+ +Q LTNL L L+ + +S++ N + L++
Sbjct: 86 NLVKLTNLYIGTNKITDISALQ-----NLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N+ S + +M L L ++ +++K +
Sbjct: 141 ANHNLSDL----------------------SPLSNMT--------GLNYLTVTESKVKDV 170
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS----STDPFFEHLPIWLLNH 431
L + S+N+N I L + ++
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITPVANMT------ 221
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
L SL + N ++++S L L + +L N + ++
Sbjct: 222 ----------RLNSLKIGNNK--ITDLSPLANLSQLTWLEIGT-----------NQISDI 258
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKIL 550
++ L+ ++ L++ + Q++ I + NL L L +++N++ E L +L L
Sbjct: 259 N-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316
Query: 551 DVSYNKLTMLPDGFVMLSNLTTFY 574
+S N +T + LS + +
Sbjct: 317 FLSQNHITDIR-PLASLSKMDSAD 339
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 75/287 (26%)
Query: 256 KLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
LT + L+L N+ D++ + +T L L ++ +K+ ++ N L L +
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLS-----NMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
++N E + S+ L NQI
Sbjct: 185 NYNQIEDIS-----------------------PLASLT--------SLHYFTAYVNQITD 213
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLN 430
+ L + + +N + L L + + + L
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISDINAVKDLT----- 265
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
L L++ + +S++S L L + L +N N L
Sbjct: 266 -----------KLKMLNVGSNQ--ISDISVLNNLSQLNSLFLNN-----------NQLGN 301
Query: 491 LPLSIL-YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
+ ++ L+++ L LS + I + +L ++ + ++ + K
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 35/292 (11%), Positives = 87/292 (29%), Gaps = 70/292 (23%)
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L ++++ + + + +
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV----------------------- 38
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEF 406
E + + KL ++ ++ + L+ ++N N I
Sbjct: 39 TQEELE--------SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNL 87
Query: 407 LCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ L L + + ++L NL L++ +S++S L
Sbjct: 88 VKLTNLYIGTNKITDISALQNLT----------------NLRELYLNEDN--ISDISPLA 129
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
L + LN N + ++ + L ++ ++ + I NL
Sbjct: 130 NLTKMYSLNLGA-----------NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLT 177
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L++++N++ + A+L SL N++T + ++ L +
Sbjct: 178 DLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLK 227
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 22/124 (17%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L+ LT L++ N DIN V+ LT L +L++ N++S++ N L L +
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVK-----DLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESM-PLCLQVHFCKLVKLDISH 369
++N + + + +S N+ + PL K+ D ++
Sbjct: 295 NNNQLGNEDM---------EVIGGLTNLTTLFLSQNHITDIRPLA---SLSKMDSADFAN 342
Query: 370 NQIK 373
IK
Sbjct: 343 QVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L++ + + LTNLT L LS N+ DI + L+ + D ++ + +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL-----ASLSKMDSADFANQVIKK 347
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 45/344 (13%), Positives = 109/344 (31%), Gaps = 94/344 (27%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++ + S+ Q N+ LDLS N ++ + + T L +L+LS N L E
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
D + L+ LD+++N + + +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVGPS-------------------------------- 100
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ L ++N I + R K + +++
Sbjct: 101 --IETLHAANNNISRVSCSR--------------------------GQGKKNIYLAN--- 129
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHM----QNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + + + N ++ +++LN
Sbjct: 130 ----------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY- 178
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535
N ++++ ++ + ++ L LS+ +L + + + + +++ +NK+
Sbjct: 179 ----------NFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227
Query: 536 KLPESFANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQR 577
+ ++ ++L+ D+ N L D F + T Q
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-20
Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 93/329 (28%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LS ++ + + T L +L+LS N + + + L+ L LDL++N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLSTLRTLDLNNNYV 92
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
EL + ++ L ++NN + Q +++N +
Sbjct: 93 QELLVGPS---IETLHAANNNISR------------VSCSRGQGKKNIYLANNKITMLRD 137
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+ ++ LD+ N+I ++ + T L+ LN
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----------------------LEHLN 175
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ N I +V +K L+ S
Sbjct: 176 LQ-------------------------YNFI-----------YDVKGQVVFAKLKTLDLS 199
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
+ N L + + + + L N +L I + + LE ++ N
Sbjct: 200 S-----------NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPD 562
+ K+ ++ V+ + L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 38/335 (11%), Positives = 92/335 (27%), Gaps = 74/335 (22%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L++ I +++ + + LDL N +NF ++ L L+L +N + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFIYD 183
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ + F LK LD+S N M F+S
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMG----------------------PEFQSAA------- 214
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ + + +N++ ++ + Q L+ ++
Sbjct: 215 -GVTWISLRNNKLVLI--EKALRFSQN----------------------LEHFDLRGNGF 249
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
L + + ++ V + + + Y C D+
Sbjct: 250 HCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYG-----AYCCEDLPAP 302
Query: 480 KSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP- 538
+ L L L + + + N +++ + +
Sbjct: 303 FADR---------LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353
Query: 539 ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTT 572
+ ++ L+ L + +G + L
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIG-NLICLEKLNISHNKVYKL-PESFANLKSLK 548
+ + + +++ L + + +++L++S N + ++ A L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L++S N L D LS L T
Sbjct: 62 LLNLSSNVLYETLD-LESLSTLRTLD 86
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 66/349 (18%), Positives = 138/349 (39%), Gaps = 29/349 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESM--SQKLTNLIVLDLSHN 295
T++LSH ++ + +L NL L LS+N I ++ ++L L+LS N
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNK---IQALKSEELDIFANSSLKKLELSSN 181
Query: 296 KLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMP 352
++ E F L L +++ L + + ++ +S++ +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPS---LTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 353 --LCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHN-IGMKIPEWFWYQEFL 407
L + + L LD+S+N + ++ L+ F + +N I
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLF 296
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467
++ LN+ + + + L ++ L L+M++ + L N+
Sbjct: 297 NVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEK 526
KYL+ SN S + L L S + L+L+ +++ I + L LE
Sbjct: 356 KYLSLSN------SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 527 LNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
L++ N++ + + + L+++ + +SYNK L F ++ +L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 65/358 (18%), Positives = 117/358 (32%), Gaps = 62/358 (17%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
++S + + + Q L L L++ N+ I ++ +M L NL L L
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND---IPGIKSNMFTGLINLKYLSL 360
Query: 293 SHNKLS------ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
S++ S E L L L+++ N S I +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI---------------------SKIESD 399
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFW 402
F + L LD+ N+I + + +++N F
Sbjct: 400 AFSWLG--------HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF- 450
Query: 403 YQEFLCLKELNMSSTD-PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L+ L + + P NL L + N N L
Sbjct: 451 -ALVPSLQRLMLRRVALKNVDSSPSPFQP---------LRNLTILDLSNNNIANINDDML 500
Query: 462 KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IG 519
+ L+ ++ L+ N++ + LS + L+L + + IP +
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYF---LKGLSHLHILNLESNGFDEIPVEVFK 557
Query: 520 NLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDGF--VMLSNLTTFY 574
+L L+ +++ N + LP S F N SLK L++ N +T + NLT
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 9e-26
Identities = 76/359 (21%), Positives = 128/359 (35%), Gaps = 78/359 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL+H + + + + + LT LD+ N I+ ++ + QKL L VL+L HN+LS+
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
L D F L EL + N+ + I +N F
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQK---------------------IKNNPFVKQK----- 121
Query: 358 HFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L+ LD+SHN + LQ +++N I E LK+L +
Sbjct: 122 ---NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHM------QNTAAVMSNVSQLKYLKNIK 468
SS N ++ G F + L Q ++ + +I+
Sbjct: 179 SS-------------NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 469 YLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEK 526
L+ S + + + F+ L +++ L LS LN + D L LE
Sbjct: 226 NLSLSNSQLSTTSNTTFLG---------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 527 LNISHNKVYKL-PESFANLKSLKILD---------VSYNKLTMLPDG-FVMLSNLTTFY 574
+ +N + L S L +++ L+ +S L + D F L L
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-24
Identities = 65/351 (18%), Positives = 113/351 (32%), Gaps = 80/351 (22%)
Query: 238 TVNLSHQDINFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++LS+ ++ + K TNLT+LDLS+NN +N V L L L +N
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN---LNVVGNDSFAWLPQLEYFFLEYN 282
Query: 296 KLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
+ L ++ L++ + + IS + +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQ--------------------SISLASLPKIDD 322
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHN---IGMKIPEWFWYQEFLC 408
L L++ N I + T L+ S++++ + E F
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
L LN++ N + E+ FS L L+ L
Sbjct: 383 LHILNLTK-------------NKISKIESDAFSWL---------------GHLEVL---- 410
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL-NCIPEDIGNLICLEKL 527
L N+I + L +I E++LS + + L++L
Sbjct: 411 DLG-LNEIGQELT----------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 528 NISHNK---VYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ V P F L++L ILD+S N + + D L L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 53/337 (15%), Positives = 119/337 (35%), Gaps = 87/337 (25%)
Query: 238 TVNLSHQDINFVQES----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
++LS+ + + +S + L +L+L+ N I+ ++ L +L VLDL
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK---ISKIESDAFSWLGHLEVLDLG 413
Query: 294 HNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
N++ + + + + E+ +S+N + ++ N+F
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKY---------------------LQLTRNSFAL 452
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN-IGMKIPEWFWYQE 405
+P L +L + +K + + L +++N I + +
Sbjct: 453 VP--------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EG 502
Query: 406 FLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465
L+ L++ N ++ + A + LK L
Sbjct: 503 LEKLEILDLQH-------------------------NNLA-RLWKHANPGGPIYFLKGLS 536
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLIC 523
++ LN + N E+P+ + L ++ + L LN +P + N +
Sbjct: 537 HLHILNLES-----------NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 524 LEKLNISHNKVYKLPESF--ANLKSLKILDVSYNKLT 558
L+ LN+ N + + + ++L LD+ +N
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 4e-18
Identities = 59/317 (18%), Positives = 104/317 (32%), Gaps = 91/317 (28%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDIS 315
+ V D SH + TN+ VL+L+HN+L LP +F + L LD+
Sbjct: 4 VSHEVADCSHLKLTQV------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N S + + +P L L++ HN++ L
Sbjct: 58 FNTI---------------------SKLEPELCQKLP--------MLKVLNLQHNELSQL 88
Query: 376 HKP--RCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM 432
L + N I F Q+ L L++S N +
Sbjct: 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--LITLDLSH-------------NGL 133
Query: 433 ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN-CSNDIDHRKSQDFVNVLWEL 491
+ G L+N++ L +N I KS++
Sbjct: 134 SSTKLGTQVQ---------------------LENLQELLLSNNKIQALKSEEL------- 165
Query: 492 PLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNK-VYKLPESFA---NLKS 546
I SS+++L LS+ Q+ P + L L +++ + L E S
Sbjct: 166 --DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 547 LKILDVSYNKLTMLPDG 563
++ L +S ++L+ +
Sbjct: 224 IRNLSLSNSQLSTTSNT 240
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 82/326 (25%)
Query: 240 NLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+L +I + L N+ + LS+N + + + +L L L L
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNK---YLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 299 ELPD----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ F + L LD+S+NN ++I+ + E +
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNI---------------------ANINDDMLEGLE-- 504
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
KL LD+ HN + L K H + + L LN+
Sbjct: 505 ------KLEILDLQHNNLARLWK-------------HANPGGPIYFL--KGLSHLHILNL 543
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S F+ +P+ + + L + + S ++K LN
Sbjct: 544 ESNG--FDEIPVEVFKDL--------FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 475 DIDHRKSQDFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
N++ + + ++ EL + +C E I + +N +H
Sbjct: 594 -----------NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHT 640
Query: 533 KVYKLPESF-----ANLKSLKILDVS 553
+ +L + + +
Sbjct: 641 NIPELSSHYLCNTPPHYHGFPVRLFD 666
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICL 524
+ + +CS+ L ++P + ++I L+L++ QL + + L
Sbjct: 5 SHEVADCSH-----------LKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQL 51
Query: 525 EKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++ N + KL PE L LK+L++ +N+L+ L D F +NLT +
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 74/234 (31%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D SH +P L + L+++HNQ++ L F+
Sbjct: 10 DCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAA-------NFTRYSQ--------- 50
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++ N + E + L L
Sbjct: 51 -------LTSLDVGF-------------NTISKLEPELCQKLPML--------------- 75
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPED-IG 519
K LN + N L +L +++ ELHL + + I +
Sbjct: 76 ------KVLNLQH-----------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 520 NLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
L L++SHN + + L++L+ L +S NK+ L + + ++
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 54/354 (15%), Positives = 111/354 (31%), Gaps = 99/354 (27%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + I +++ + L NL L L +N I+ + L L L LS
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---ISKISPGAFAPLVKLERLYLSK 109
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N+L ELP+ + K L+EL + N + + F +
Sbjct: 110 NQLKELPEKM-PKTLQELRVHENEITK---------------------VRKSVFNGLN-- 145
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+++ +++ N +K F L + +
Sbjct: 146 ------QMIVVELGTNPLKSSGIEN-----GAFQGMKK----------------LSYIRI 178
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN------TAAVMSNVSQLKYLKNIK 468
+ ++ G+ +L LH+ AA + ++ L L
Sbjct: 179 AD-------------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL---- 221
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
L+ N I + N ++ELHL+N +L +P + + ++ +
Sbjct: 222 GLS-FNSISAVDNGSLAN-----------TPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269
Query: 529 ISHNKVYKLPES-------FANLKSLKILDVSYNKLTML---PDGFVMLSNLTT 572
+ +N + + + S + + N + P F +
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 55/323 (17%), Positives = 102/323 (31%), Gaps = 111/323 (34%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ +LDL +N I +++ + L NL L L +NK+S++ F L+ L +S
Sbjct: 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + +P + L +L + N+I +
Sbjct: 109 KNQLKELPEKM--------------------------------PKTLQELRVHENEITKV 136
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
K F+ + + + + + N ++
Sbjct: 137 RK-------SVFNGLNQ----------------MIVVELGT-------------NPLKSS 160
Query: 436 --ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL 493
ENG F + L Y+ ++ + +P
Sbjct: 161 GIENGAFQGMKKL---------------------SYIRIAD-----------TNITTIPQ 188
Query: 494 SILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILD 551
+ S+ ELHL ++ + L L KL +S N + + S AN L+ L
Sbjct: 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 552 VSYNKLTMLPDGFVMLSNLTTFY 574
++ NKL +P G + Y
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVY 269
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 31/158 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L I V + + L NL L LS N+ I+ V +L L L++NKL +
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNS---ISAVDNGSLANTPHLRELHLNNNKLVK 254
Query: 300 LPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
+P + K ++ + + +NN + I N+F P
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISA---------------------IGSNDF--CPPGYNTK 291
Query: 359 FCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN 392
+ + N ++ RC + + +
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 64/345 (18%), Positives = 118/345 (34%), Gaps = 86/345 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L+ ++ V+ L NL L L N + + + L+NL LD+S NK+
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNR---LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
L D F + LK L++ N+ ISH F +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVY---------------------ISHRAFSGLN--- 152
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
L +L + + + H L + H I + F L L
Sbjct: 153 -----SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRL- 202
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ L I +++ L N+ L+ +
Sbjct: 203 --------KVLEISHWPYLDTMTPNCLYGL----------------------NLTSLSIT 232
Query: 474 NDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
+ L +P + +L ++ L+LS ++ I + L+ L+++ +
Sbjct: 233 H-----------CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
++ + +F L L++L+VS N+LT L + F + NL T
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-25
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 65/343 (18%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V + V E + T +LDL N I + + +L L+L+ N +
Sbjct: 15 AVLCHRKRFVAVPEGIP---TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIV 68
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S + F N L+ L + N I F +
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRL---------------------KLIPLGVFTGLS--- 104
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE-WFWYQEFLCLKEL 412
L KLDIS N+I IL + + L++ + N + I F L++L
Sbjct: 105 -----NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--LEQL 157
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ + +P L+H+ LI L +++ K L +K L
Sbjct: 158 TLEKCN--LTSIPTEALSHL--------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISH 531
S+ L + + LY ++ L +++ L +P + +L+ L LN+S+
Sbjct: 208 SHW----------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
N + + L L+ + + +L ++ F L+ L
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 61/327 (18%), Positives = 107/327 (32%), Gaps = 85/327 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ L + + + L+NLT LD+S N I + + M Q L NL L++ N L
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ F L++L + N + I +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNL---------------------TSIPTEALSHLH--- 176
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNH-NIGMKIPEWFWYQEFLCLKEL 412
L+ L + H I + + + L+ ++H + Y L L L
Sbjct: 177 -----GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSL 229
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+++ + +P +L L++L L+
Sbjct: 230 SITHCN--LTAVP-----------YLAVRHL---------------VYLRFL----NLS- 256
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
N I + L +QE+ L QL + L L LN+S
Sbjct: 257 YNPISTIEGSMLHE-----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKL 557
N++ L ES F ++ +L+ L + N L
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 48/283 (16%), Positives = 80/283 (28%), Gaps = 91/283 (32%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ D+ ++ L +L L L N + + L LIVL L H ++
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN---LTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS------DISHNNFESM 351
+ D F LK L+ISH + + I+H N ++
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLD-----------TMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
P H L L++S+N I + L+E
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEG-------SMLHELLR----------------LQE 276
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
+ + + + E F L L + LN
Sbjct: 277 IQLVG-------------GQLAVVEPYAFRGLNYL---------------------RVLN 302
Query: 472 CSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC 513
S N L L S+ + +++ L L + L C
Sbjct: 303 VSG-----------NQLTTLEESVFHSVGNLETLILDSNPLAC 334
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 84/293 (28%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF 348
+ + +P+ + + LD+ N ++ ++ + F
Sbjct: 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT---------------------LNQDEF 52
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC 408
S P L +L+++ N + + F+ N
Sbjct: 53 ASFP--------HLEELELNENIVSAVEP-------GAFNNLFN---------------- 81
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVF---SNLISLHMQNTAAVMSNVSQLKYLK 465
L+ L + S N ++L GVF SNL L + V+ + L
Sbjct: 82 LRTLGLRS-------------NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNLIC 523
N+K L + N L + L+S+++L L L IP + +L
Sbjct: 129 NLKSLEVGD-----------NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 524 LEKLNISHNKVYKLPE-SFANLKSLKILDVSYNK-LTMLPDGFVMLSNLTTFY 574
L L + H + + + SF L LK+L++S+ L + + NLT+
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L + V+ + L L VL++S N + ++ES+ + NL L L N L
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ---LTTLEESVFHSVGNLETLILDSNPL 332
Query: 298 S 298
+
Sbjct: 333 A 333
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 60/323 (18%), Positives = 117/323 (36%), Gaps = 54/323 (16%)
Query: 256 KLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLKEL 312
L+ L L L N +I + + + L L L N L+ E+P L N L +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIP---QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 313 DISHNNFE-SMPLCLQVHFYVHIPYKHSQS----DISHNNFE-SMPLCLQVHFCKLVKLD 366
+S+N +P + ++ +S+N+F ++P L L+ LD
Sbjct: 496 SLSNNRLTGEIPKWI----------GRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLD 544
Query: 367 ISHNQI--KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHL 424
++ N I P + I K + + F
Sbjct: 545 LNTNLFNGTI---PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-GNLLEFQGIR 600
Query: 425 PIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDF 484
L S ++ + ++ +L+ S
Sbjct: 601 SEQLNR---------LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY---------- 641
Query: 485 VNVLW-ELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESF 541
N+L +P I + + L+L + ++ IP+++G+L L L++S NK+ ++P++
Sbjct: 642 -NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 542 ANLKSLKILDVSYNKLT-MLPDG 563
+ L L +D+S N L+ +P+
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 76/369 (20%), Positives = 128/369 (34%), Gaps = 80/369 (21%)
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESM 280
+ L + + D+ ++S N V +S L L +S N D++
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDV----- 196
Query: 281 SQKLTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339
+ NL LD+S N S +P + L+ LDIS N S
Sbjct: 197 -SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----------DFSRAIS 244
Query: 340 QS------DISHNNFE-SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392
+IS N F +P L L ++ N
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAEN---------------------K 280
Query: 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452
+IP++ L L++S F+ +P + + L+ + SN S +
Sbjct: 281 FTGEIPDFLSGA-CDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPM-- 336
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLS-SIQELHLSNVQ 510
L ++ +K L+ S N ELP S+ LS S+ L LS+
Sbjct: 337 ------DTLLKMRGLKVLDLSF-----------NEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 511 LN-CIPEDIGN--LICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFV 565
+ I ++ L++L + +N K+P + +N L L +S+N L+ +P
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 566 MLSNLTTFY 574
LS L
Sbjct: 440 SLSKLRDLK 448
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 8e-22
Identities = 74/333 (22%), Positives = 121/333 (36%), Gaps = 95/333 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL--NFKVLKEL 312
T L +L++S N FV L +L L L+ NK + E+PDFL L L
Sbjct: 245 TCTELKLLNISSNQ-----FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 313 DISHNNFESMPLCLQVHFYVHIP--YKHSQS----DISHNNFE-SMPLCLQVHFCKLVKL 365
D+S N+F +P + +S NNF +P+ + L L
Sbjct: 300 DLSGNHFYG-----------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
D+S N+ G ++PE L L++SS + F +
Sbjct: 349 DLSFNEFS--------------------G-ELPESLTNLSAS-LLTLDLSSNN-FSGPIL 385
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
L + + L L++QN
Sbjct: 386 PNLCQNP-------KNTLQELYLQN----------------------------------- 403
Query: 486 NVL-WELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFA 542
N ++P ++ S + LHLS L+ IP +G+L L L + N + ++P+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 543 NLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFY 574
+K+L+ L + +N LT +P G +NL
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-20
Identities = 70/340 (20%), Positives = 117/340 (34%), Gaps = 62/340 (18%)
Query: 257 LTNLTVLDLSHNNHQDINFV-QESMSQKLTNLIVLDLSHNKLS-----ELPDFLNFKVLK 310
+ L L++S N ++F + S KL +L VLDLS N +S LK
Sbjct: 125 CSGLKFLNVSSNT---LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFE-SMPLCLQVHFCKLVKL 365
L IS N + + D+S NNF +P L L
Sbjct: 182 HLAISGNKISG-----------DVDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHL 228
Query: 366 DISHNQI--KILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFE 422
DIS N++ L+ +++ N IP L+ L+++ F
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS----LQYLSLAENK-FTG 283
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ 482
+P +L L L + + ++ L S+
Sbjct: 284 EIPDFLSGAC--------DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS-------- 327
Query: 483 DFVNVLW-ELPLSILY-LSSIQELHLSNVQLN-CIPEDIGNLIC-LEKLNISHNKVY-KL 537
N ELP+ L + ++ L LS + + +PE + NL L L++S N +
Sbjct: 328 ---NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 538 PESFAN--LKSLKILDVSYNKLT-MLPDGFVMLSNLTTFY 574
+ +L+ L + N T +P S L + +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 66/344 (19%), Positives = 110/344 (31%), Gaps = 94/344 (27%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS---ELPDFLNFKVLKELD 313
+LT LDLS N+ S+ + L L++S N L ++ L L+ LD
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQS---------DISHNNFE-SMPLCLQVHFCKLV 363
+S N+ S IS N + + L
Sbjct: 158 LSANSISG-----------ANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RCVNLE 203
Query: 364 KLDISHNQI--KILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPF 420
LD+S N I C+ LQ ++ N + +
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAIS----------TCTE---- 248
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
L + + N F I LK+++YL+ +
Sbjct: 249 --------LKLLNISSNQ-FVGPIPP---------LP------LKSLQYLSLAE------ 278
Query: 481 SQDFVNVL-WELPLSILY-LSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKL 537
N E+P + ++ L LS +P G+ LE L +S N
Sbjct: 279 -----NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN---F 330
Query: 538 -----PESFANLKSLKILDVSYNKLT-MLPDGFVMLS-NLTTFY 574
++ ++ LK+LD+S+N+ + LP+ LS +L T
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-18
Identities = 75/360 (20%), Positives = 130/360 (36%), Gaps = 87/360 (24%)
Query: 238 TVNLSHQDINFVQESMS---QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
+++LS + +N ++S LT L L LS+++ S + +L LDLS
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSLDLSR 109
Query: 295 NKLS-ELPDFL---NFKVLKELDISHNNFE---SMPLCLQVHFYVHIPYKHSQSDISHNN 347
N LS + + LK L++S N + + L+++ + D+S N+
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL-------DLSANS 162
Query: 348 FES---MPLCLQVHFCKLVKLDISHNQI--KILHKP--RCTHTLQTFSMNHNIGMKIPEW 400
+ L +L L IS N+I + RC + L+ ++ N
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVN-LEFLDVSSN-------- 210
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
N S+ PF L H+++ N S S
Sbjct: 211 ------------NFSTGIPFLGDCS--ALQHLDISGNK-LSGDFS-------------RA 242
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLN-CIPEDI 518
+ +K LN S+ N +P L S+Q L L+ + IP+ +
Sbjct: 243 ISTCTELKLLNISS-----------NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFL 289
Query: 519 -GNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFY 574
G L L++S N Y +P F + L+ L +S N + + D + + L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 99/321 (30%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISH 316
+T +DLS S LT L L LS++ ++ + F L LD+S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N+ + S S L L++S N +
Sbjct: 110 NSLSG-----------PVTTLTSLGSCSG----------------LKFLNVSSNTL---- 138
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
F + G+K+ L+ L++S+ + +
Sbjct: 139 ---------DFPGKVSGGLKLNS---------LEVLDLSANS-ISGANVVGWV------- 172
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L K+L S N + + +
Sbjct: 173 --LSDGCGEL---------------------KHLAISG-----------NKI-SGDVDVS 197
Query: 497 YLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSY 554
+++ L +S+ + IP +G+ L+ L+IS NK+ + + LK+L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 555 NKLT-MLPDGFVMLSNLTTFY 574
N+ +P L +L
Sbjct: 257 NQFVGPIPPL--PLKSLQYLS 275
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 8e-15
Identities = 72/362 (19%), Positives = 114/362 (31%), Gaps = 86/362 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL--NFKVLKEL 312
+ L L LS NN + K+ L VLDLS N+ S ELP+ L L L
Sbjct: 316 SCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 313 DISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDISHN 370
D+S NNF + L + + + + +N F +P L + +LV L +S N
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTL----QELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN 428
Query: 371 QI--KILHKPRC---THTLQTFSMNHN--IGMKIPEWFWYQEFLCLKELNMSSTDPFFE- 422
+ I P L+ + N G +IP+ Y + L + L +
Sbjct: 429 YLSGTI---PSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTL--ETLILDFN--DLTG 480
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV------SQLKYLKNIKYLNCSNDI 476
+P L N +NL + + N N + L+N+ L SN
Sbjct: 481 EIPSGLSN---------CTNLNWISLSN------NRLTGEIPKWIGRLENLAILKLSN-- 523
Query: 477 DHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKV 534
N +P + S+ L L+ N IP + N K
Sbjct: 524 ---------NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 535 YK-----------------------LPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
Y E L + +++ F ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 571 TT 572
Sbjct: 635 MF 636
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 62/343 (18%), Positives = 127/343 (37%), Gaps = 37/343 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I + E+ +L +L L + ++ + + L++LI+L L +N+ +
Sbjct: 36 DLSLNSIAELNETSFSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESM-P 352
L F L+ L ++ N + L +K S + NN + + P
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNF-------FKPLTSLEMLVLRDNNIKKIQP 146
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
++ + LD++ N++K + C L F H +++ L+++
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSI----CEEDLLNFQGKHFTLLRLSSI-------TLQDM 195
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
N P + L + N M ++++ L N
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLD---LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
+ H +D N L S ++ LS ++ + + + + LE+L ++
Sbjct: 253 GSSFGHTNFKDPDN----FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
N++ K+ + +F L L L++S N L + F L L
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 72/346 (20%), Positives = 131/346 (37%), Gaps = 40/346 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + ++ L NL VL L+ N + + + LT+L +L L N + +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 300 LPD---FLNFKVLKELDISHNNFESMP----LCLQVHFYVHIPYKHSQ-SDISHNNFESM 351
+ FLN + LD++ N +S+ L Q + + D++
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
+ LD+S N K R + + I K+
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
+ + F+ L + +L ++ +F+ + +V S+ + L+ L L
Sbjct: 264 PDNFT----FKGLEASGVKTCDLSKSKIFA--LL------KSVFSHFTDLEQL----TLA 307
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNIS 530
N+I+ F L+ + +L+LS L I + NL LE L++S
Sbjct: 308 -QNEINKIDDNAFWG-----------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 531 HNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+N + L + SF L +LK L + N+L +PDG F L++L +
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 52/301 (17%), Positives = 93/301 (30%), Gaps = 74/301 (24%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLT--NLIVLDLSHNKLSELPD---------- 302
+ VLDL+ N + + E + +L LS L ++ +
Sbjct: 151 LNMRRFHVLDLTFNK---VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 303 FLNFKVLKELDISHNNFESMPL--------CLQVHFYVHIPYKHSQSDISHNNFESMP-- 352
+ LD+S N F+ ++ + + S H NF+
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 353 LCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC-- 408
+ + D+S ++I L K L+ ++ N KI + F
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWGLT 323
Query: 409 -LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQN------TAAVMSNV 458
L +LN+S N + ++ +F NL L + +
Sbjct: 324 HLLKLNLSQ-------------NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPED 517
LK L L+ N L +P I L+S+Q++ L +C
Sbjct: 371 PNLKEL----ALD-------------TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Query: 518 I 518
I
Sbjct: 414 I 414
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYN 555
+ + + LS + + E L L+ L + + +F L SL IL + YN
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+ L G F L+NL
Sbjct: 90 QFLQLETGAFNGLANLEVLT 109
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 62/259 (23%)
Query: 362 LVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ +D+S N I L++ + LQ + + +
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ------------------TPGLVIRNN 73
Query: 420 FFEHLPIWLLNHMELKEN-------GVFSNLISL------HMQNTAAVMSNVSQLKYLKN 466
F L L ++L N G F+ L +L AV+S + K L +
Sbjct: 74 TFRGLS--SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTS 130
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPEDI---GNL 521
++ L + N + ++ + + L L+ ++ I E+
Sbjct: 131 LEMLVLRD-----------NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 522 ICLEKLNISHNKVYKLPE---------SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
L +S + + E + S+ LD+S N F T
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 572 TFYAQRKYWMFLTISLLCY 590
+ + S +
Sbjct: 240 KIQSLILSNSYNMGSSFGH 258
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 6e-25
Identities = 54/348 (15%), Positives = 89/348 (25%), Gaps = 107/348 (30%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ N + I+ L N V + L L+ L
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENR--NEAVSLLKECLINQFSELQLNRLNL 71
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
S LPD L + L+I+ N S+P
Sbjct: 72 SSLPDNL-PPQITVLEITQNALISLP---------------------------------E 97
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
L LD N++ L PE LK L++ +
Sbjct: 98 LPASLEYLDACDNRLSTL----------------------PE-----LPASLKHLDVDNN 130
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNCS 473
LP + L ++ N QL L +++ L+
Sbjct: 131 Q--LTMLPELP------------ALLEYINADNN--------QLTMLPELPTSLEVLSVR 168
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEK----LNI 529
N N L LP S++ L +S L +P E+
Sbjct: 169 N-----------NQLTFLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 530 SHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577
N++ +PE+ +L + + N L+ + Y
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 103/330 (31%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + DI+ +++ + L +L L L +N I+ + E L L L +S
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYISK 111
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N L E+P L L EL I N + F +
Sbjct: 112 NHLVEIPPNL-PSSLVELRIHDNRI---------------------RKVPKGVFSGLR-- 147
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ +++ N ++ F G+K L L +
Sbjct: 148 ------NMNCIEMGGNPLENSGFEP-----GAFD-----GLK------------LNYLRI 179
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S + + L LH+ + N
Sbjct: 180 SE-------------AKLTGIPKDLPETLNELHLDH-----------------------N 203
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNK 533
I + +D + S + L L + Q+ I L L +L++ +NK
Sbjct: 204 KIQAIELEDLLR-----------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPDG 563
+ ++P +LK L+++ + N +T +
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 67/341 (19%), Positives = 117/341 (34%), Gaps = 111/341 (32%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V S + V + +S + T+LDL +N+ I+ +++ + L +L L L +NK+
Sbjct: 37 VVQCSDLGLKAVPKEIS---PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKI 90
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S++ + F + L++L IS N+ +P L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL----------------------------- 121
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
LV+L I N+I+ + K FS N + + M
Sbjct: 122 ---PSSLVELRIHDNRIRKVPK-------GVFSGLRN----------------MNCIEMG 155
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
L + E G F L + YL S
Sbjct: 156 GN----------PLENSGF-EPGAFDGL----------------------KLNYLRISE- 181
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKV 534
L +P + ++ ELHL + ++ I + L +L + HN++
Sbjct: 182 ----------AKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 535 YKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ S + L +L+ L + NKL+ +P G L L Y
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 48/331 (14%), Positives = 101/331 (30%), Gaps = 93/331 (28%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L + I+ + E L L L +S N+ + + ++ ++L+ L + N++
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNH---LVEIPPNL---PSSLVELRIHDNRI 135
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
++P F + + +++ N E+ F K + IS +P L
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FD---GLKLNYLRISEAKLTGIPKDL 191
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L +L + HN+I+ + + L L +
Sbjct: 192 ---PETLNELHLDHNKIQAIEL-------EDLLRYSK----------------LYRLGLG 225
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + ENG S L +L + L+ N
Sbjct: 226 H-------------NQIRMIENGSLSFLPTL---------------------RELHLDN- 250
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-------GNLICLEKLN 528
N L +P + L +Q ++L + + + ++
Sbjct: 251 ----------NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 529 ISHNKVYKL---PESFANLKSLKILDVSYNK 556
+ +N V P +F + + K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 70/396 (17%), Positives = 132/396 (33%), Gaps = 48/396 (12%)
Query: 224 TELNCCNKQYHDIFT--------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
+ ++ N+ + ++LS I+ ++ L+ L VL LSHN + ++
Sbjct: 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD- 92
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP 335
+ +L LD+SHN+L + L+ LD+S N+F+ +P+C + +
Sbjct: 93 --FHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL- 148
Query: 336 YKHSQSDISHNNFESMPLC------LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSM 389
+ +S F + L L LV I + + L P T F
Sbjct: 149 ---TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQ 449
N +++ L L + ++ + + EL N+ H++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-----ELTRGPTLLNVTLQHIE 260
Query: 450 NTAAVMSNVSQLKYLKNIKYLNCSN-----DIDHRKSQDFVNVLWELPLSILY------- 497
T + Q + + ++YLN N ID + L L + +
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320
Query: 498 -------LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLK 548
+ + LS I + LN + N + LK L+
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584
L + N L +M N+++ L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 65/437 (14%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
LQ+I + L L + N V + ++ + L
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQK----------LTNLTVLDLSHN--N 269
L+ + T +L + + + L L LS+ N
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 270 HQDINFVQESMSQKLTNLIVLDLSHNKLS-------ELPDFLNFKVLKELDISHNNFESM 322
++ + +S+ +L+++ + +L F + ++ L+I +
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
Query: 323 PLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK--PRC 380
+ + + + F L F ++ +S + +H P
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351
Query: 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440
+ + N+ Q LK L + L+ N
Sbjct: 352 PSSFTFLNFTQNVFTDSVF----QGCSTLKR-----------------LQTLILQRN--- 387
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
L + A + N+S L+ L N ++ W + +L LSS
Sbjct: 388 -GLKNF--FKVALMTKNMSSLETLD-----VSLNSLNSHAYDRTCA--WAESILVLNLSS 437
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
L+ C+P ++ L++ +N++ +P+ +L++L+ L+V+ N+L +
Sbjct: 438 NM---LTGSVFRCLPPK------VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 561 PDG-FVMLSNLTTFYAQ 576
PDG F L++L +
Sbjct: 489 PDGVFDRLTSLQYIWLH 505
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 24/174 (13%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
+ + L+ N + V + + + +
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 222 IDTEL--NCCNKQYHDIF-----------TVNLSHQDINFVQESMSQKLT-NLTVLDLSH 267
E N + +NLS N + S+ + L + VLDL +
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS---NMLTGSVFRCLPPKVKVLDLHN 459
Query: 268 NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF 319
N I L L L+++ N+L +PD F L+ + + N +
Sbjct: 460 NRIMSIP----KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+ SN L +P+D+ + L++S N + +L + L L++L +S+N++
Sbjct: 31 ELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 558 TMLPDG-FVMLSNLTTFY 574
L F+ +L
Sbjct: 89 RSLDFHVFLFNQDLEYLD 106
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-24
Identities = 63/347 (18%), Positives = 111/347 (31%), Gaps = 108/347 (31%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ V + + ++ V + + +N L+L NN I +Q + L +L VL L
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQL 106
Query: 293 SHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
N + ++ F L L++ N I FE
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTV---------------------IPSGAFEY 145
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ KL +L + +N I+ + F L
Sbjct: 146 LS--------KLRELWLRNNPIESIP---------------------SYAF--NRVPSLM 174
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
L++ L +E G F L +L KYL
Sbjct: 175 RLDLGE------------LKKLEYISEGAFEGLFNL---------------------KYL 201
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNI 529
N + ++P ++ L ++EL +S I L L+KL +
Sbjct: 202 NLGM-----------CNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+++V + +F L SL L++++N L+ LP F L L +
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 8e-16
Identities = 61/299 (20%), Positives = 107/299 (35%), Gaps = 85/299 (28%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL +I +Q + L +L VL L N+ I ++ L +L L+L N L+
Sbjct: 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P F L+EL + +N ES I F +P
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIES---------------------IPSYAFNRVP----- 171
Query: 358 HFCKLVKLDISH-NQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L++LD+ +++ + + L+ ++ +P + L+EL M
Sbjct: 172 ---SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL---TPLVGLEELEM 225
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S NH G F L S LK L ++ ++
Sbjct: 226 SG-------------NHFPEIRPGSFHGL---------------SSLKKL----WVM-NS 252
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
+ + F L+S+ EL+L++ L+ +P D+ L L +L++ HN
Sbjct: 253 QVSLIERNAFDG-----------LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 52/280 (18%), Positives = 82/280 (29%), Gaps = 82/280 (29%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L I ++ L +L L+L N + + + L+ L L L +N +
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW---LTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+P F L LD+ + IS FE +
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELK--------------KL------EYISEGAFEGLF--- 196
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L L++ IK + L+ M+ N P F L K+L +
Sbjct: 197 -----NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL--KKLWV 249
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ + + L E F L SL LN ++
Sbjct: 250 MN-------------SQVSLIERNAFDGLASL---------------------VELNLAH 275
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
N L LP + L + ELHL + NC
Sbjct: 276 -----------NNLSSLPHDLFTPLRYLVELHLHHNPWNC 304
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 64/347 (18%), Positives = 119/347 (34%), Gaps = 108/347 (31%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ V +++ V + +S TN +L+L N I ++ + + L +L +L L
Sbjct: 42 SNQFSKVICVRKNLREVPDGIS---TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQL 95
Query: 293 SHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
S N + + F L L++ N + I + F
Sbjct: 96 SRNHIRTIEIGAFNGLANLNTLELFDNRLTT---------------------IPNGAFVY 134
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ KL +L + +N I+ + F L+
Sbjct: 135 LS--------KLKELWLRNNPIESIP---------------------SYAF--NRIPSLR 163
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
L++ L + G F L +L +YL
Sbjct: 164 RLDLGE------------LKRLSYISEGAFEGLSNL---------------------RYL 190
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNI 529
N + L E+P ++ L + EL LS L+ I L+ L+KL +
Sbjct: 191 NLAM-----------CNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+++ + +F NL+SL +++++N LT+LP F L +L +
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 6e-16
Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 85/299 (28%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL I ++ + + L +L +L LS N+ I ++ L NL L+L N+L+
Sbjct: 70 NLHENQIQIIKVNSFKHLRHLEILQLSRNH---IRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P+ F+ LKEL + +N ES I F +P
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIES---------------------IPSYAFNRIP----- 160
Query: 358 HFCKLVKLDISH-NQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +LD+ ++ + + L+ ++ +IP + L EL++
Sbjct: 161 ---SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK---LDELDL 214
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S NH+ G F L+ L +L ++ +
Sbjct: 215 SG-------------NHLSAIRPGSFQGLMHLQ------------KL-------WMI-QS 241
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
I + F N L S+ E++L++ L +P D+ L LE++++ HN
Sbjct: 242 QIQVIERNAFDN-----------LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 49/280 (17%), Positives = 87/280 (31%), Gaps = 82/280 (29%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS I ++ L NL L+L N + + L+ L L L +N +
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR---LTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+P F L+ LD+ + S IS FE +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELK--------------RL------SYISEGAFEGLS--- 185
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L L+++ ++ + L ++ N + P F + L++L M
Sbjct: 186 -----NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWM 238
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ +++ E F NL SL +N ++
Sbjct: 239 IQ-------------SQIQVIERNAFDNLQSL---------------------VEINLAH 264
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
N L LP + L ++ +HL + NC
Sbjct: 265 -----------NNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-23
Identities = 55/318 (17%), Positives = 117/318 (36%), Gaps = 69/318 (21%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L +T L + I+ V+ L NL ++ S+N+L+++ N L ++ +++
Sbjct: 45 LDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 99
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + ++ L L + +NQI +
Sbjct: 100 NQIADIT-----------------------PLANLT--------NLTGLTLFNNQITDID 128
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ L ++ N I L++L+ + +LK
Sbjct: 129 PLKNLTNLNRLELSSNTISDISAL---SGLTSLQQLSFGN-------------QVTDLKP 172
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L L + + +S++S L L N++ L +N N + ++ +
Sbjct: 173 LANLTTLERLDISSNK--VSDISVLAKLTNLESLIATN-----------NQISDIT-PLG 218
Query: 497 YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNK 556
L+++ EL L+ QL I + +L L L++++N++ L + L L L + N+
Sbjct: 219 ILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276
Query: 557 LTMLPDGFVMLSNLTTFY 574
++ + L+ LT
Sbjct: 277 ISNIS-PLAGLTALTNLE 293
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 61/324 (18%), Positives = 124/324 (38%), Gaps = 77/324 (23%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ L NLT ++ S+N DI + + LT L+ + +++N+++++ N L L +
Sbjct: 65 EYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
+N + +++ L +L++S N I
Sbjct: 120 FNNQITDID-----------------------PLKNLT--------NLNRLELSSNTISD 148
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLN 430
+ +LQ S + + P L+ L++SS L
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKP----LANLTTLERLDISSNKVSDISVLAKLT----- 199
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
NL SL N +S+++ L L N+ L+ + N L +
Sbjct: 200 -----------NLESLIATNNQ--ISDITPLGILTNLDELSLNG-----------NQLKD 235
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550
+ ++ L+++ +L L+N Q++ + + L L +L + N++ + A L +L L
Sbjct: 236 IG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNL 292
Query: 551 DVSYNKLTMLPDGFVMLSNLTTFY 574
+++ N+L + L NLT
Sbjct: 293 ELNENQLEDIS-PISNLKNLTYLT 315
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 51/320 (15%), Positives = 117/320 (36%), Gaps = 71/320 (22%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L L N D + L + L + + L +++ S
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQTD-----LDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N + +++ KLV + +++NQI +
Sbjct: 77 NNQLTDIT-----------------------PLKNLT--------KLVDILMNNNQIADI 105
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM-EL 434
L ++ +N +I + + L L +SS N + ++
Sbjct: 106 TPLANLTNLTGLTLFNN---QITDIDPLKNLTNLNRLELSS-------------NTISDI 149
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
++L L N ++++ L L ++ L+ S+ N + ++
Sbjct: 150 SALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISS-----------NKVSDIS-V 194
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ L++++ L +N Q++ I +G L L++L+++ N++ + + A+L +L LD++
Sbjct: 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252
Query: 555 NKLTMLPDGFVMLSNLTTFY 574
N+++ L L+ LT
Sbjct: 253 NQISNLA-PLSGLTKLTELK 271
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-19
Identities = 57/311 (18%), Positives = 100/311 (32%), Gaps = 73/311 (23%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
KLTNL L ++N DI + LTNL L L+ N+L ++ + L +LD+
Sbjct: 196 AKLTNLESLIATNNQISDITPLG-----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
++N ++ + KL +L + NQI
Sbjct: 251 ANNQISNLA-----------------------PLSGLT--------KLTELKLGANQISN 279
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS----STDPFFEHLPIWLLN 430
+ L +N N I L L + S L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFNNISDISPVSSLT----- 331
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
L L N +S+VS L L NI +L+ + N + +
Sbjct: 332 -----------KLQRLFFYNNK--VSDVSSLANLTNINWLSAGH-----------NQISD 367
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550
L + L+ I +L L++ P + + + + P + ++ S
Sbjct: 368 LT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
Query: 551 DVSYNKLTMLP 561
D+++N +
Sbjct: 427 DITWNLPSYTN 437
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-19
Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 68/317 (21%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
LT L LD+S N DI+ + KLTNL L ++N++S++ L EL ++
Sbjct: 175 NLTTLERLDISSNKVSDISVLA-----KLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + + S+ L LD+++NQI L
Sbjct: 230 GNQLKDIG-----------------------TLASLT--------NLTDLDLANNQISNL 258
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME-L 434
L + N I L L ++ N +E +
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELNE-------------NQLEDI 302
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
NL L + +S++S + L ++ L N N + ++ S
Sbjct: 303 SPISNLKNLTYLTLYFNN--ISDISPVSSLTKLQRLFFYN-----------NKVSDVS-S 348
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ L++I L + Q++ + + NL + +L ++ P ++ S+ +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Query: 555 NKLTMLPDGFVMLSNLT 571
+ P + T
Sbjct: 408 TGALIAPATISDGGSYT 424
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 8e-15
Identities = 43/303 (14%), Positives = 79/303 (26%), Gaps = 86/303 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
LTNLT LDL++N ++ + LT L L L N++S + L L+++
Sbjct: 241 SLTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N E + ++ L L + N I +
Sbjct: 296 ENQLEDIS-----------------------PISNLK--------NLTYLTLYFNNISDI 324
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
LQ +N + +L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSS---------------------LANLT---------- 353
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI 495
N+ L + +S+++ L L I L ++ P++
Sbjct: 354 ------NINWLSAGHNQ--ISDLTPLANLTRITQLGLND-----------QAWTNAPVNY 394
Query: 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
SI + P I + + +I+ N E +
Sbjct: 395 KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
Query: 556 KLT 558
+
Sbjct: 455 TFS 457
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-23
Identities = 66/345 (19%), Positives = 109/345 (31%), Gaps = 109/345 (31%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + + V + ++ T L+L N + + + KLT L L LS N L
Sbjct: 11 EIRCNSKGLTSVPTGIP---SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 298 SELP----DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
S LK LD+S N +M +NF +
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMS----------------------SNFLGLE- 101
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+L LD H+ +K + + F N L L+
Sbjct: 102 -------QLEHLDFQHSNLKQMSEFS------VFLSLRN----------------LIYLD 132
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+S H + NG+F+ L S L+ L + +
Sbjct: 133 ISH-------------THTRVAFNGIFNGL---------------SSLEVL----KMAGN 160
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
+ ++ F L ++ L LS QL + +L L+ LN+SHN
Sbjct: 161 SFQENFLPDIFTE-----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 533 KVYKLPES-FANLKSLKILDVSYNKLTMLPDG--FVMLSNLTTFY 574
+ L + L SL++LD S N + S+L
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 2e-21
Identities = 64/358 (17%), Positives = 108/358 (30%), Gaps = 58/358 (16%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+SH I ++ S+ + L LDLSHN I+ NL LDLS N
Sbjct: 51 IISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC------HPTVNLKHLDLSFNAFDA 104
Query: 300 LPD---FLNFKVLKELDISHNNFESMPLCLQVHF-YVHIPYKHSQSDISHNNFESMPLCL 355
LP F N LK L +S + E + H + ++ + E
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG----- 159
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L + I F N + L L +
Sbjct: 160 ------LQDFNTESLHI-------------VFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN- 474
D + L N SNL +++ T + QL + + Y + SN
Sbjct: 201 LEDNKCSYFLSILAKLQ---TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 475 ----DIDHRKSQDFVNVLWELPLSILY--------------LSSIQELHLSNVQLNCIPE 516
+D R L L + + S++ + + +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 517 DI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ L+ S+N + E+ +L L+ L + N+L L M + + +
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 6e-20
Identities = 65/380 (17%), Positives = 117/380 (30%), Gaps = 70/380 (18%)
Query: 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
F V+ S + V + +S T+L++S N I+ + S L+ L +L +SHN+
Sbjct: 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNR 56
Query: 297 LSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFES 350
+ L F + L+ LD+SHN I + + D+S N F++
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHNKLVK------------ISCHPTVNLKHLDLSFNAFDA 104
Query: 351 MPLCLQVHFCKLVKL---DISHNQIK------------------------------ILHK 377
+P+C + F + +L +S ++ L
Sbjct: 105 LPICKE--FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 378 PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN 437
F N + L L + D + L N
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ---TN 219
Query: 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY 497
SNL +++ T + QL + + Y + SN + S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN-----VKLQGQLDFRDFDYSGTS 274
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L ++ + + I + N + + + + + LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
LT L+ L T
Sbjct: 335 LLTDTVFENCGHLTELETLI 354
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 55/443 (12%), Positives = 138/443 (31%), Gaps = 75/443 (16%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L I V L+ L + N + K K + + +
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 222 IDTELNC-------------CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHN 268
L + + V ++++ +F+ + + + NL + ++
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 269 NHQDINFVQESMSQKLT--------NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFE 320
+ S+ KL L ++ + N + + + IS+ +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 321 SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380
+ S + + F + F + + + + +++H
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440
+ L+ S+ N +
Sbjct: 321 SKISP-----------------------FLHLDFSN-------------NLLTDTVFENC 344
Query: 441 SNLISLHM----QNTAAVMSNVSQL-KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLS 494
+L L N +S ++++ +K+++ L+ S N + + + + +
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-------- 396
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ S+ L++S+ L ++ L++ NK+ +P+ L++L+ L+V+
Sbjct: 397 --WTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 555 NKLTMLPDG-FVMLSNLTTFYAQ 576
N+L +PDG F L++L +
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLH 476
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 56/412 (13%), Positives = 132/412 (32%), Gaps = 69/412 (16%)
Query: 168 DILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227
+ QL+ L + + P L + T E +
Sbjct: 112 GNMSQLKFLGLSTTHLE------KSSVLPIAHLNISKVLLVLGETYGEKEDPEGL----- 160
Query: 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT-- 285
+ + V ++++ +F+ + + + NL + ++ + S+ KL
Sbjct: 161 -QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 286 ------NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339
L ++ + N + + + IS+ + + S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKI 397
+ + F + F + + + + +++H + ++N
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN----- 334
Query: 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN---------GVFSNLISLHM 448
L + + HL L + L+ N + + + SL
Sbjct: 335 ----------LLTDTVFEN----CGHLT--ELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 449 ----QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQEL 504
QN+ + + K++ LN S+ N+L + L I+ L
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSS-----------NILTDTIFRCL-PPRIKVL 426
Query: 505 HLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L + ++ IP+ + L L++LN++ N++ +P+ F L SL+ + + N
Sbjct: 427 DLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 56/431 (12%), Positives = 131/431 (30%), Gaps = 76/431 (17%)
Query: 161 ELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDI 217
+Q ++ + +LE L + +N KL +
Sbjct: 56 RIQYLDISVFKFNQELEYLDLSHN-----------------KLVKISCHPTVNL------ 92
Query: 218 AMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ 277
L+ + + F ++ L L LS + + + +
Sbjct: 93 ------KHLDLSFNAFDAL------PICKEF------GNMSQLKFLGLSTTHLEKSSVLP 134
Query: 278 ESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK-ELDISHNNFESMPLCLQVHFYVHIPY 336
+ L+VL ++ + + +F + N L + V ++
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 337 KHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
+ + + N L +++ N I+ + + +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT--WNSFIRILQLVWHTTVWYF 252
Query: 397 IPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLL--NHMELKENGVFSNLISLHMQNTAAV 454
Q L ++ + S T + L I + + ++ ++ +++++N
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTS--LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT-- 308
Query: 455 MSNVSQL-----KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSN 508
+S + + +L+ SN N+L + +L+ ++ L L
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSN-----------NLLTDTVFENCGHLTELETLILQM 357
Query: 509 VQLNCIPEDIG---NLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDG 563
QL + + + L++L+IS N V + KSL L++S N LT
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 564 FVMLSNLTTFY 574
+ +
Sbjct: 418 -CLPPRIKVLD 427
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 85/288 (29%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ F Q + + +N+ + + + + + V K++ + LD S+N L++
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR---MVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+ L+ L + N + + ++ M
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEM-------------------TTQMK----- 374
Query: 358 HFCKLVKLDISHNQIK-ILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +LDIS N + K C+ +L + +M+ N + + + +K L++
Sbjct: 375 ---SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN---ILTDTIFRCLPPRIKVLDL 428
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S N ++ V L+ ++ LN ++
Sbjct: 429 HS-------------NKIKSIPKQVVK----------------------LEALQELNVAS 453
Query: 475 DIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGNL 521
N L +P I L+S+Q++ L +C I L
Sbjct: 454 -----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 490
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 6e-21
Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 91/332 (27%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDLS+N I ++ S Q+ NL L L+ N ++ + + F + L+ LD+S
Sbjct: 52 EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N + +S + F+ + L L++ N K L
Sbjct: 109 YNYLSN---------------------LSSSWFKPLS--------SLTFLNLLGNPYKTL 139
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
+ F L +L + + + N
Sbjct: 140 GETSL-------------------------FSHLTKLQI-----------LRVGNMDTFT 163
Query: 436 E--NGVFSNL-----ISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNV 487
+ F+ L + + + + LK ++N+ +L
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDV- 220
Query: 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDI----GNLICLEKLNISHNKVYKLPESFAN 543
S + +++ L + + + I+ ++++ +
Sbjct: 221 -----TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L L+ S N+L +PDG F L++L +
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 52/301 (17%), Positives = 99/301 (32%), Gaps = 55/301 (18%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS+ I ++ S Q+ NL L L+ N IN ++E L +L LDLS+N LS
Sbjct: 58 DLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLSYNYLSN 114
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLC-----LQVHFYVHIPYKHSQSDISHNNFESMP 352
L F L L++ N ++++ L + + + + I +F +
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
L +L+I + ++ P+ + + L
Sbjct: 175 --------FLEELEIDASDLQSYE---------------------PKSL--KSIQNVSHL 203
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ L S+ + L + +
Sbjct: 204 ILHM-------------KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
R + L+++ + +S + EL S QL +P+ I L L+K+ +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 532 N 532
N
Sbjct: 311 N 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ-----ESMSQKLTNLIVLDL 292
+ L + + E +++ L+L + +F + + K + +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 293 SHNKLSELPD-FLNFKVLKELDISHNNFESMP 323
+ L ++ L EL+ S N +S+P
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 162 LQSIEDDI---LVQLECLHIDNNKAQEYIVSM--NVDRTPGFKLQNNDNDQNTKV-TNAM 215
I+ L LE L ID + Q Y ++ L Q+ + +
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK---QHILLLEIFV 218
Query: 216 DIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
D+ + EL D +++ + + K + ++ + +
Sbjct: 219 DVTSSVECLEL-------RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-- 269
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF 319
+ +++ L+ L+ S N+L +PD F L+++ + N +
Sbjct: 270 --MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-20
Identities = 54/316 (17%), Positives = 98/316 (31%), Gaps = 53/316 (16%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNN 318
N + Q + + E +L L LD ++ ++++ L +L + NN
Sbjct: 19 NFASEVAAAFEMQATDTISEE---QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN 75
Query: 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP 378
++ L + N ++ + KL L+ N++ L
Sbjct: 76 ITTLDLSQNTNLT--------YLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLDVS 124
Query: 379 RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENG 438
+ L + N L E+++S L L + +
Sbjct: 125 QNPL-LTYLNCARN---------------TLTEIDVSHN-TQLTELDCHLNKKITKLDVT 167
Query: 439 VFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL 498
+ L +L +VSQ K + LNC N + +L L+
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQ---NKLLNRLNCDT-----------NNITKLDLN--QN 211
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ L S+ +L I D+ L L + S N + +L S L L L L
Sbjct: 212 IQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLL 267
Query: 559 MLPDGFVMLSNLTTFY 574
+ + L F
Sbjct: 268 EID--LTHNTQLIYFQ 281
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 79/328 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + + T LT LD S N +++ + L L+ N +++
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV------SQNKLLNRLNCDTNNITK 205
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
L D L LD S N + + + + D S N + +
Sbjct: 206 L-DLNQNIQLTFLDCSSNKLTEIDVTPLT--------QLTYFDCSVNPLTELDVS---TL 253
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
KL L + + T L F +KEL+++
Sbjct: 254 SKLTTLHCIQTDLLEIDLTHNTQ-LIYFQAEGCRK--------------IKELDVTH--- 295
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
+ L L Q ++SQ + YL +N
Sbjct: 296 --------------------NTQLYLLDCQAAGITELDLSQ---NPKLVYLYLNN----- 327
Query: 480 KSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE 539
L EL +S + + ++ L N + +G + L + + +P+
Sbjct: 328 ------TELTELDVS--HNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPK 378
Query: 540 SFANLKSL------KILDVSYNKLTMLP 561
SL +LD N + + P
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMNIEP 406
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 29/196 (14%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ++ L +L LH E ++ N Q + ++ + +
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI---YFQAEGCRKIKELDVTHNTQLY- 300
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS 281
L+C I ++LS + L L L++ +++
Sbjct: 301 ---LLDCQAAG---ITELDLS-------------QNPKLVYLYLNNTELTELDV------ 335
Query: 282 QKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
T L L + + + L + +MP + + I
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395
Query: 342 DISHNNFESMPLCLQV 357
D N P V
Sbjct: 396 DQFGNPMNIEPGDGGV 411
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 42/309 (13%), Positives = 98/309 (31%), Gaps = 89/309 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L N + +N D + L + L ++ + L L++
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQAD-----LDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + +++ K+ +L++S N +K +
Sbjct: 72 DNQITDLA-----------------------PLKNLT--------KITELELSGNPLKNV 100
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
+++T + +I + L+ L +
Sbjct: 101 SAIAGLQSIKTLDLTST---QITDVTPLAGLSNLQVLYLDL------------------- 138
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI 495
N I+ N+S L L N++YL+ N + +L +
Sbjct: 139 ------NQIT-----------NISPLAGLTNLQYLSIGN-----------AQVSDLT-PL 169
Query: 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
LS + L + +++ I + +L L ++++ +N++ + AN +L I+ ++
Sbjct: 170 ANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQ 227
Query: 556 KLTMLPDGF 564
+T P +
Sbjct: 228 TITNQPVFY 236
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
+NLI L +++ +++++ LK L I L S N L + +I L
Sbjct: 62 LNNLIGLELKDNQ--ITDLAPLKNLTKITELELSG-----------NPLKNVS-AIAGLQ 107
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559
SI+ L L++ Q+ + + L L+ L + N++ + A L +L+ L + +++
Sbjct: 108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 560 LPDGFVMLSNLTTFYAQ 576
L LS LTT A
Sbjct: 166 L-TPLANLSKLTTLKAD 181
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 40/218 (18%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD-- 418
+K+ + + + T S I Q L L +
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQIT 76
Query: 419 --PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
++L + L + + NVS + L++IK L+ ++
Sbjct: 77 DLAPLKNLT----------------KITELELSGNP--LKNVSAIAGLQSIKTLDLTS-- 116
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
+ ++ + LS++Q L+L Q+ I + L L+ L+I + +V
Sbjct: 117 ---------TQITDVT-PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 537 LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L ANL L L NK++ + L NL +
Sbjct: 166 L-TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVH 201
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
LTNL L + + D+ + L+ L L NK+S++ + L E+ +
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLA-----NLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Query: 315 SHNNFESMP 323
+N +
Sbjct: 203 KNNQISDVS 211
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 28/155 (18%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID-TELNC 228
L ++ L + + + + + L N ++TN +A L + L+
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN------QITNISPLA-GLTNLQYLSI 158
Query: 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI 288
N Q D+ + L+ LT L N DI+ + L NLI
Sbjct: 159 GNAQVSDL---------------TPLANLSKLTTLKADDNKISDISPL-----ASLPNLI 198
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
+ L +N++S++ N L + +++ + P
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 21/140 (15%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
N + + K L VL L + + + V +++ L LDLSHN L +
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 300 LPDFLNFKV---LKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMP 352
+ L L++S + +P L D+S+N + P
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGL------------PAKLSVLDLSYNRLDRNP 290
Query: 353 LCLQVHFCKLVKLDISHNQI 372
++ L + N
Sbjct: 291 SPD--ELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 42/309 (13%), Positives = 84/309 (27%), Gaps = 71/309 (22%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDF----LNFKVLKE 311
K +L L + ++ L L L + +++ L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
L++ + ++ + L + I+ + + F L LD+S N
Sbjct: 126 LNLRNVSWATRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
I P F + L L+ M + L
Sbjct: 185 E--------------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------- 223
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
++ L+ S+ N L +
Sbjct: 224 -----------------------------AAARVQLQGLDLSH-----------NSLRDA 243
Query: 492 PLSI--LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549
+ + S + L+LS L +P+ + L L++S+N++ + P S L +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP-SPDELPQVGN 300
Query: 550 LDVSYNKLT 558
L + N
Sbjct: 301 LSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 42/329 (12%), Positives = 80/329 (24%), Gaps = 83/329 (25%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFLNFKVLKELD 313
+L L + D+ + + K +L L + ++ L L+EL
Sbjct: 44 SLEYLLKRVDTEADLGQFTDII--KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ + + P L+ L L++ +
Sbjct: 102 LENLEV---------------------------TGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 374 ILHK------PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIW 427
L+ S+ + + F L L++S
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSD----------- 182
Query: 428 LLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNV 487
N + + ++ L N
Sbjct: 183 --------------NPEL-----GERGLISALCPLKFPTLQVLALRN-------AGMETP 216
Query: 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPESFANLK 545
+Q L LS+ L L LN+S + ++P+
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PA 274
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L +LD+SYN+L P L +
Sbjct: 275 KLSVLDLSYNRLDRNPS-PDELPQVGNLS 302
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 50/296 (16%), Positives = 87/296 (29%), Gaps = 102/296 (34%)
Query: 285 TNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
+ L N++S +P F + L L + N +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---------------------AR 70
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHN-QIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
I F + L +LD+S N Q++ + TF
Sbjct: 71 IDAAAFTGLA--------LLEQLDLSDNAQLRSVDP-------ATFHGLGR--------- 106
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++ ++ G+F L + L
Sbjct: 107 -------LHTLHLDR-------------CGLQELGPGLFRGL---------------AAL 131
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GN 520
+YL YL N + F + L ++ L L +++ +PE
Sbjct: 132 QYL----YLQ-DNALQALPDDTFRD-----------LGNLTHLFLHGNRISSVPERAFRG 175
Query: 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L L++L + N+V + +F +L L L + N L+ LP L L
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 19/168 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + + + L L LDLS N + V + L L L L L E
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L+ L + N +++P F + + + N S+P
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDT---F------RDLGNLTHLFLHGNRISSVPE 170
Query: 354 CLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE 399
L +L + N++ +H R L T + N +P
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 36/157 (22%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L + + + + L L L L N + + + + L NL L L N++S
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA---LQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P+ F L L + N + + F +
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAH---------------------VHPHAFRDLG----- 201
Query: 358 HFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHN 392
+L+ L + N + L LQ +N N
Sbjct: 202 ---RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-11
Identities = 49/287 (17%), Positives = 75/287 (26%), Gaps = 98/287 (34%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLS 298
L I+ V + + NLT+L L N + + + L L LDLS N +L
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ F L L + + + F +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQE---------------------LGPGLFRGLA---- 129
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
L L + N ++ L TF N L L +
Sbjct: 130 ----ALQYLYLQDNALQALPD-------DTFRDLGN----------------LTHLFLHG 162
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQN------TAAVMSNVSQLKYLKNI 467
N + F L SL + ++ +L L
Sbjct: 163 -------------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL--- 206
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC 513
YL N L LP L L ++Q L L++ C
Sbjct: 207 -YLFA-------------NNLSALPTEALAPLRALQYLRLNDNPWVC 239
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 15/302 (4%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
N D + +L + + + CL V F + +
Sbjct: 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLL 275
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW-Y 403
E+ + TF + E
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335
Query: 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKY 463
C + + F L + ++ E L L +N +++ + ++
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTIILLMRA 394
Query: 464 LKNIKYLNCSN---------DIDHRKSQDFV--NVLWELPLSILYLSSIQELHLSNVQLN 512
L + Y + D D + L E + + + ++ LHL++ L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 513 CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ + L+ + L++SHN++ LP + A L+ L++L S N L + G L L
Sbjct: 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512
Query: 573 FY 574
Sbjct: 513 LL 514
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 6e-12
Identities = 45/305 (14%), Positives = 102/305 (33%), Gaps = 30/305 (9%)
Query: 261 TVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL-SELPDFLNFKVLKELDISHNNF 319
T+L + + + + +++ + DL L +LP + D
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332
Query: 320 ESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR 379
+ + ++S + L+ +L +L+ N+ +L
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEP-ENKWCLLTIIL 390
Query: 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439
L Q F LK ++ + +LL + LK
Sbjct: 391 LMRALDPLLYEKET---------LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
++ L ++ ++ + L+ L + +L+ S+ N L LP ++ L
Sbjct: 442 DVRVLHLAHKD----LTVLCHLEQLLLVTHLDLSH-----------NRLRALPPALAALR 486
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKL 557
++ L S+ L + + NL L++L + +N++ + + L +L++ N L
Sbjct: 487 CLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 558 TMLPD 562
Sbjct: 546 CQEEG 550
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 225 ELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL 284
E + +Y D+ ++L+H+D+ + ++L +T LDLSHN + + L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRAL----PPALAAL 485
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
L VL S N L + N L+EL + +N +
Sbjct: 486 RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 40/264 (15%)
Query: 157 FCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMD 216
H + I Q EC+ + + S ++ +L ++T + + ++
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE---KSTVLQSELE 369
Query: 217 IAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSH-----NNHQ 271
EL + E NK + + D ++ Q + L +D +
Sbjct: 370 SCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFY 331
+ + ++ VL L+H L+ L ++ LD+SHN ++P L
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA---- 483
Query: 332 VHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391
L L S N ++ + LQ + +
Sbjct: 484 --------------------------ALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517
Query: 392 NIGMKIPEWFWYQEFLCLKELNMS 415
N + L LN+
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQ 541
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-07
Identities = 52/387 (13%), Positives = 108/387 (27%), Gaps = 64/387 (16%)
Query: 173 LECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + ++ + F + + +D A ++ +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESM-SQKLTNLIVLD 291
++ +L +N + ++ S L +
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355
Query: 292 LSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
LS K + L L + K L+EL+ N + + + L + + Y+
Sbjct: 356 LSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQ-------- 406
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+F L +D + + M + L L
Sbjct: 407 -------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD----------VRVLHLA 449
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
+++ E L + + H++L N L +L L L+ ++ L
Sbjct: 450 HKDLTVL-CHLEQLLL--VTHLDLSHN----RLRALP-----------PALAALRCLEVL 491
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE--DIGNLICLEKLN 528
S+ N L + + L +QEL L N +L + + L LN
Sbjct: 492 QASD-----------NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539
Query: 529 ISHNKVYKLPES----FANLKSLKILD 551
+ N + + L S+ +
Sbjct: 540 LQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 56/340 (16%), Positives = 98/340 (28%), Gaps = 106/340 (31%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + N L + +Q+ +L +++S N +
Sbjct: 13 VFLCQESKVTEIPSDLP---RNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
E+ + F N L E+ I N ++ I+ F+++P
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKAN--------------NL------LYINPEAFQNLP-- 104
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L L IS+ IK L H+LQ L++
Sbjct: 105 ------NLQYLLISNTGIKHLPDVHKIHSLQ-----------------------KVLLDI 135
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
++ E F L + L +LN
Sbjct: 136 QD------------NINIHTIERNSFVGL--------------SFESVIL----WLNK-- 163
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLS-NVQLNCIPEDI-GNLICLEKLNISHN 532
N + E+ S + + EL+LS N L +P D+ L+IS
Sbjct: 164 -----------NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 533 KVYKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+++ LP NLK L+ K + V L +
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 7e-11
Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 49/280 (17%)
Query: 233 YHDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
+ D+ + +S + ++ + L L + + N+ + ++ Q L NL L
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LLYINPEAFQNLPNLQYLL 110
Query: 292 LSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE 349
+S+ + LPD ++ LDI N +I I N+F
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNI--------------NI------HTIERNSFV 150
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE-WFW---Y 403
+ + V L ++ N I+ +H T + ++N ++P F
Sbjct: 151 GLSF-------ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203
Query: 404 QEFLCLKELNMSSTDPF-FEHLP-IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ- 460
L + + S + E+L + + LK+ L++L A ++ S
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVAL----MEASLTYPSHC 259
Query: 461 ---LKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSIL 496
+ + I L+ N R+ D++ S+
Sbjct: 260 CAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLA 299
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 50/299 (16%), Positives = 83/299 (27%), Gaps = 94/299 (31%)
Query: 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE 349
+K++E+P L + EL I F
Sbjct: 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRV---------------------IQKGAFS 51
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ--TFSMNHNIGMKIPEWFWYQEFL 407
L K++IS N + ++ FS
Sbjct: 52 GFG--------DLEKIEISQNDV--------LEVIEADVFSNLPK--------------- 80
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQNT------AAVMSNV 458
L E+ + N++ F NL +L + NT +
Sbjct: 81 -LHEIRIEKA------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI 518
Q L + + +I + FV + +E L L+ + I
Sbjct: 128 LQKVLL----DIQDNINIHTIERNSFVGLSFES----------VILWLNKNGIQEIHNSA 173
Query: 519 GNLICLEKLNISH-NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
N L++LN+S N + +LP F ILD+S ++ LP L L
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 19/170 (11%)
Query: 162 LQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAM--D 216
L I + L L+ L I N + + L DN +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 217 IAMELIDTELNCCNKQY--HDIF-------TVNLSHQDINFVQESMSQKLTNLTVLDLSH 267
++ E + LN Q + F + ++ + + + +LD+S
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 268 NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
I+ + + L L L +LP L E +++
Sbjct: 212 TR---IHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLTYP 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-13
Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 86/289 (29%)
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
I +L +++ + ++ ++++ +S+
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 59
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ +P + KL ++ N++ + L ++ N KI
Sbjct: 60 ----GIQYLP--------NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN---KI----- 99
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ L L SL +++ +S+++ L
Sbjct: 100 -------------KDLSSLKDLK----------------KLKSLSLEHNG--ISDINGLV 128
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+L ++ L N N + ++ + L+ + L L + Q++ I + L
Sbjct: 129 HLPQLESLYLGN-----------NKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLT 175
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
L+ L +S N + L + A LK+L +L++ + P SNL
Sbjct: 176 KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINH--QSNLV 221
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 1e-12
Identities = 52/322 (16%), Positives = 102/322 (31%), Gaps = 83/322 (25%)
Query: 224 TELNCCNKQYHDIF---------TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDIN 274
E + IF NL + + +L ++ + ++++ + +
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 59
Query: 275 FVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334
+Q L N+ L L+ NKL+++ N K L L + N
Sbjct: 60 GIQ-----YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--------------- 99
Query: 335 PYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIG 394
D+S + + + KL L + HN I ++ L++ + +N
Sbjct: 100 ------KDLS--SLKDLK--------KLKSLSLEHNGISDINGLVHLPQLESLYLGNN-- 141
Query: 395 MKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450
KI + L L++ L L ++ L +N +
Sbjct: 142 -KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT--KLQNLYLSKNHI----------- 187
Query: 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ 510
S++ L LKN+ L + K + + L + ++
Sbjct: 188 -----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN----------TVKNTDGS 232
Query: 511 LNCIPEDIGNLICLEKLNISHN 532
L PE I + EK N+ +
Sbjct: 233 LVT-PEIISDDGDYEKPNVKWH 253
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 5e-10
Identities = 32/216 (14%), Positives = 74/216 (34%), Gaps = 54/216 (25%)
Query: 359 FCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418
F + +K ++ + +++ N++ +
Sbjct: 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------------------- 59
Query: 419 PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
++LP N+ L + ++++ L LKN+ +L
Sbjct: 60 -GIQYLP----------------NVTKLFLNGNK--LTDIKPLTNLKNLGWLFLDE---- 96
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N + +L S+ L ++ L L + ++ I + +L LE L + +NK+ +
Sbjct: 97 -------NKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI- 146
Query: 539 ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ L L L + N+++ + L+ L Y
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY 181
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 6e-10
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 24/171 (14%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L L L L +N DI + +LT L L L N++S++ L+ L +
Sbjct: 128 VHLPQLESLYLGNNKITDITVLS-----RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFCKLVKLDISHN 370
S N+ + ++ ++ + P+ Q + + +
Sbjct: 183 SKNHISDLR-----------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFF 421
+ + N+ +PE+ F+ + + + F
Sbjct: 232 SLVTPEIISDDGDYE----KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 86/289 (29%)
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
I +L +++ + ++ ++++ +S+
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 62
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ +P + KL ++ N++ + L ++ N
Sbjct: 63 ----GIQYLP--------NVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN---------- 100
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ + L L SL +++ +S+++ L
Sbjct: 101 ----------KVKDLSSL-KDLK----------------KLKSLSLEHNG--ISDINGLV 131
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+L ++ L N N + ++ + L+ + L L + Q++ I + L
Sbjct: 132 HLPQLESLYLGN-----------NKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
L+ L +S N + L + A LK+L +L++ + P SNL
Sbjct: 179 KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINH--QSNLV 224
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/305 (13%), Positives = 93/305 (30%), Gaps = 111/305 (36%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+L ++ + ++++ + + +Q L N+ L L+ NKL+++ N K L L +
Sbjct: 43 NELNSIDQIIANNSDIKSVQGIQ-----YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL 97
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
N D+S + + + KL L + HN I
Sbjct: 98 DENKV---------------------KDLS--SLKDLK--------KLKSLSLEHNGIS- 125
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMEL 434
+ L+ L +
Sbjct: 126 --------DINGLVHLPQ----------------LESLYLG------------------- 142
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
+N I ++++ L L + L+ + N + ++
Sbjct: 143 ------NNKI-----------TDITVLSRLTKLDTLSLED-----------NQISDIV-P 173
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVS 553
+ L+ +Q L+LS ++ + + L L+ L + + P + +NL + +
Sbjct: 174 LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 554 YNKLT 558
L
Sbjct: 233 DGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 54/217 (24%)
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
F + +K ++ + +++ N++ +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 62
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
++LP N+ L + ++++ L LKN+ +L
Sbjct: 63 --GIQYLP----------------NVTKLFLNGNK--LTDIKPLANLKNLGWLFLDE--- 99
Query: 478 HRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537
N + +L S+ L ++ L L + ++ I + +L LE L + +NK+ +
Sbjct: 100 --------NKVKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI 149
Query: 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ L L L + N+++ + L+ L Y
Sbjct: 150 -TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY 184
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 490 ELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+ + + Q++HL+ L + + +G L L++ +N++Y LP+ LK L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTFY 574
L+VS+N L +P G L
Sbjct: 271 HSLNVSFNNLCGEIPQGGN-LQRFDVSA 297
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 6e-11
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+P +I L+ + L++++ ++ IP+ + + L L+ S+N + LP S ++L +L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTF 573
+ N+++ +PD + S L T
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTS 178
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 491 LPLSILYLSSIQELHLSNV-QLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+P S+ L + L++ + L IP I L L L I+H V +P+ + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTFY 574
LD SYN L+ LP L NL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGIT 155
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICL-EKLNISHNKVY-KLPESFANLKS 546
LP SI L ++ + +++ IP+ G+ L + IS N++ K+P +FANL +
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198
Query: 547 LKILDVSYNKLT-MLPDGFVMLSNLTTFYAQR 577
L +D+S N L F N + +
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 256 KLTNLTVLDLSHNNHQDINF---VQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLK 310
KLT L L ++H N + + +SQ + L+ LD S+N LS LP + + L
Sbjct: 99 KLTQLHYLYITHTN-----VSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 311 ELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDIS 368
+ N ++P + IS N +P L +D+S
Sbjct: 153 GITFDGNRISGAIPDSYG-----SFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLS 205
Query: 369 HNQI 372
N +
Sbjct: 206 RNML 209
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLKELD 313
N + L+ N+ + F + NL LDL +N++ LP L K L L+
Sbjct: 219 SDKNTQKIHLAKNS---LAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 314 ISHNNFE 320
+S NN
Sbjct: 275 VSFNNLC 281
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 62/322 (19%), Positives = 107/322 (33%), Gaps = 88/322 (27%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH-NKLS-ELPDFL-NFKVLKEL 312
+ + LDLS N + S++ L L L + N L +P + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 313 DISHNNFESMPLCLQVHFYVHIPYKHSQS------DISHNNFE-SMPLCLQVHFCKLVKL 365
I+H N IP SQ D S+N ++P + LV +
Sbjct: 107 YITHTNVSG-----------AIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGI 154
Query: 366 DISHNQI--KILHKPR----CTHTLQTFSMNHN--IGMKIPEWFWYQEFLCLKELNMSST 417
N+I I P + + +++ N G KIP F N++
Sbjct: 155 TFDGNRISGAI---PDSYGSFSKLFTSMTISRNRLTG-KIPPTFA----------NLN-- 198
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
L ++L N S KN + ++ +
Sbjct: 199 -----------LAFVDLSRNM-LEGDAS-------------VLFGSDKNTQKIHLAK--- 230
Query: 478 HRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY 535
N L +L + ++ L L N ++ +P+ + L L LN+S N +
Sbjct: 231 --------NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 536 -KLPESFANLKSLKILDVSYNK 556
++P+ NL+ + + NK
Sbjct: 282 GEIPQGG-NLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 514 IPEDIGNLICLEKLNISHNKVY---KLPESFANLKSLKILDVS-YNKLT-MLPDGFVMLS 568
+ + + L++S + +P S ANL L L + N L +P L+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 569 NLTTFY 574
L Y
Sbjct: 102 QLHYLY 107
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 95/582 (16%), Positives = 167/582 (28%), Gaps = 185/582 (31%)
Query: 28 EDNTDFGPDE-NEEPVPTQIDMEADISQLE-----APTFT--TITRGPPKPMLSLRWDHT 79
N F E + I Q + F ++R +P L LR
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLR---- 141
Query: 80 VHLIGEKVLNPIIHTCEKCEKPIMIYGRMICTIMK-FGKEITTVLEEDTNSGTQDTITNN 138
L L P K ++I G + GK T + D +
Sbjct: 142 QAL---LELRP--------AKNVLIDG------VLGSGK---TWV-------ALDVCLSY 174
Query: 139 SVE--MDEN----TVKTEALSTRTFCDHELQSIEDDILVQLE--CLHIDNNKAQEYIVSM 190
V+ MD +K C+ + +L L+ ID N S
Sbjct: 175 KVQCKMDFKIFWLNLKN--------CN-----SPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 191 NVDRTPG---------FKLQNN-------DNDQNTKVTNAMDIAME-LIDTELNCCNKQY 233
N+ K + N QN K NA +++ + L+ T KQ
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQV 277
Query: 234 HDIFT------VNLSHQDINFVQ-ESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKL 284
D + ++L H + E S K + DL
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLT 324
Query: 285 TNLIVLDLSHNKLSELPDFLNF-------KVLKELDISHNNFESMPLCLQVHFY------ 331
TN L + + + + K+ ++ S N E P + F
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFP 382
Query: 332 --VHIPYK---------------------HSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
HIP H S + ES + + L +L +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYL-ELKVK 438
Query: 369 HNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEW---FWYQEFLC--LKELNMSSTDPFF 421
LH+ H +TF + IP + ++Y + LK + F
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDD----LIPPYLDQYFYS-HIGHHLKNIEHPERMTLF 493
Query: 422 EHLPI---WL---LNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
+ + +L + H N + ++++ + QLK+ K Y+ ++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNA------------SGSILNTLQQLKFYK--PYICDNDP 539
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED 517
R ++ L ++ L S + +++ + ED
Sbjct: 540 KYERLVNAILDFLPKIE-ENLICSK----YTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 66/430 (15%), Positives = 135/430 (31%), Gaps = 101/430 (23%)
Query: 222 IDTELNCCNKQYHDIFTVNL----SHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ 277
+D E QY DI +V + D VQ+ L+ ++I+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-----------EEIDHII 55
Query: 278 ESMSQKLTNLIVLDLSHNKLSEL-PDFL------NFKVLKELDISHNNFESMPLCLQVHF 330
S L + +K E+ F+ N+K L + SM +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---- 111
Query: 331 YVHIPYKHSQSDISHNN---FESMPLCLQVHFCKLVK--LDISHNQIKILH------KPR 379
Y+ Q D +N+ F + + KL + L++ + ++ K
Sbjct: 112 YI------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-- 163
Query: 380 CT----HTLQTFSMNHNIGMKIPEWFW--------------YQEFLCLK-ELNMSSTDPF 420
T ++ + + KI FW + L + + N +S
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHM-QNTAAVMSNVSQLKYLKNIKYLNC------- 472
++ L ++ L+ +N V+ NV K L+C
Sbjct: 220 SSNIK---LRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTR 273
Query: 473 -SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
D + ++ + L ++ L L L+C P+D+ + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKY-LDCRPQDLPREVL----TTNP 327
Query: 532 NKVYKLPESFANLKSL--KILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF------- 582
++ + ES + + V+ +KLT + + L+ L ++ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSA 385
Query: 583 -LTISLLCYL 591
+ LL +
Sbjct: 386 HIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 84/501 (16%), Positives = 146/501 (29%), Gaps = 136/501 (27%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ED + +C + Q+ S+ L + D +A+ + L
Sbjct: 22 LSVFEDAFVDNFDCKDV-----QDMPKSI---------LSKEEIDHIIMSKDAVSGTLRL 67
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMS----QKLTNLTVLDLSHNNHQDIN--F 275
T L+ + F + + F+ + Q + + + N F
Sbjct: 68 FWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 276 VQESMS--QKLTNLIVLDLSHNKLSELPD---------------------FLNFKVLKE- 311
+ ++S Q L L EL L++KV +
Sbjct: 127 AKYNVSRLQPYLKL------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 312 ------LDISHNNFESMPLCLQVHFYVHI-PYKHSQSDISHN---NFESMPLCLQVHF-- 359
L++ + N L + I P S+SD S N S+ L+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 360 -----CKLVKLDISHNQI--------KILHKPR---------CTHTLQTFSMNHNIGMKI 397
C LV L++ + + KIL R T +H++ +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN 457
E + L LK L+ D LP L N ++I+ +++ A N
Sbjct: 301 DE----VKSLLLKYLDCRPQD-----LP-----REVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 458 VSQLKY--LKNI--KYLNCSNDIDHRKS-QDFV----NVLWELP---LSILYLSSIQELH 505
+ L I LN ++RK + +P LS+++ I+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKS-- 402
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNK--VYKLP-------ESFANLKSL--KILDVSY 554
+ N + L K +P N +L I+D Y
Sbjct: 403 --------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HY 453
Query: 555 NKLTML-PDGFVMLSNLTTFY 574
N D + FY
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY 474
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 60/302 (19%), Positives = 95/302 (31%), Gaps = 99/302 (32%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDLS N + + L VLDLS ++ + D + + L L ++
Sbjct: 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N +S+ F + L KL + L
Sbjct: 85 GNPIQSLA---------------------LGAFSGLS--------SLQKLVAVETNLASL 115
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM-EL 434
L+T LKELN++ N +
Sbjct: 116 E-NFPIGHLKT----------------------LKELNVAH-------------NLIQSF 139
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
K FSNL + L++L L+ SN I D L ++PL
Sbjct: 140 KLPEYFSNL---------------TNLEHL----DLS-SNKIQSIYCTDLRV-LHQMPLL 178
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVS 553
L L LS +N I I L++L + N++ +P+ F L SL+ + +
Sbjct: 179 NL------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232
Query: 554 YN 555
N
Sbjct: 233 TN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLN 305
+ L++L L N + + L L L+++HN + F N
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
L+ LD+S N +S+ +P + D+S N + +L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKEL 205
Query: 366 DISHNQIKIL 375
+ NQ+K +
Sbjct: 206 ALDTNQLKSV 215
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES--FANLKSLKILDVSY 554
LSS+Q+L L + G+L L++LN++HN + F+NL +L+ LD+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 555 NKLTMLPDG-FVMLSNLTTFYAQ 576
NK+ + +L +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLS 181
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 56/216 (25%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS +I +++ Q L++L+ L L+ N I + L++L L L+
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
L + + K LKEL+++HN +S F ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFK--------------------LPEYFSNLT----- 149
Query: 358 HFCKLVKLDISHNQIKILHK------PRCTHTLQTFSMNHNIGMKIPEW-FWYQEFLCLK 410
L LD+S N+I+ ++ + + ++ N I F + + LK
Sbjct: 150 ---NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLK 203
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL 446
EL + + N ++ +G+F L SL
Sbjct: 204 ELALDT-------------NQLKSVPDGIFDRLTSL 226
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 53/302 (17%), Positives = 91/302 (30%), Gaps = 111/302 (36%)
Query: 285 TNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
+ LDLS N L L F +F L+ LD+S ++
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--------------------- 66
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHNIGMKIPEW 400
I ++S+ L L ++ N I+ L +LQ +
Sbjct: 67 IEDGAYQSLS--------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-- 116
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
N +L
Sbjct: 117 ------------------------------------NFPIGHL---------------KT 125
Query: 461 LKYLKNIKYLNCSNDIDHRKSQD-FVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI- 518
LK L + N I K + F N L++++ L LS+ ++ I
Sbjct: 126 LKEL----NVA-HNLIQSFKLPEYFSN-----------LTNLEHLDLSSNKIQSIYCTDL 169
Query: 519 GNLICLE----KLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
L + L++S N + + +F ++ LK L + N+L +PDG F L++L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQK 228
Query: 573 FY 574
+
Sbjct: 229 IW 230
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 26/145 (17%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ ++ ++ L L L+++HN Q LTNL LDLS NK+
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKI 161
Query: 298 SELP--DFLNFKVLK----ELDISHNNFESMP------LCLQVHFYVHIPYKHSQSDISH 345
+ D + LD+S N + + L+ + +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK------------ELALDT 209
Query: 346 NNFESMPLCLQVHFCKLVKLDISHN 370
N +S+P + L K+ + N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYL 498
N+ L + N A +N + + L N++ L D+ K + L
Sbjct: 65 AHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSG-----------L 111
Query: 499 SSIQELHLSNVQL-NCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+S+ L +S+ + I I L + +++S+N L LK L++ ++ +
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171
Query: 558 TMLPDGFVMLSNLTTFYA 575
G L YA
Sbjct: 172 HDY-RGIEDFPKLNQLYA 188
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNH-QDINFVQESMSQKLTNLIVLDLSHNK 296
+++SH + + L + +DLS+N DI ++ L L L++ +
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK-----TLPELKSLNIQFDG 170
Query: 297 LSELPDFLNFKVLKELDISHNNFES 321
+ + +F L +L
Sbjct: 171 VHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
++ +LT + L++ N D+ ++ N+ L +++ + L+ L I
Sbjct: 42 QMNSLTYITLANINVTDLTGIE-----YAHNIKDLTINNIHATNYNPISGLSNLERLRIM 96
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
+ S + S DISH+ + L K+ +D+S+N
Sbjct: 97 GKDVTSDKIP---------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS--ELPDFLNFKVLKEL 312
+ N+ L +++ + + N + L+NL L + ++ ++P+ L L
Sbjct: 63 EYAHNIKDLTINNIHATNYNPI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 313 DISHNNFESMPLCLQVHF----YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
DISH+ + L + + Y + +DI +++P +L L+I
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP--------ELKSLNIQ 167
Query: 369 HNQIK 373
+ +
Sbjct: 168 FDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 13/119 (10%)
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLS 499
SNL L + + L L ++ L+ S + D L
Sbjct: 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-----------LP 136
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ + LS + L L+ LNI + V+ + L L +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 35/136 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-K 296
+ + +D+ + LT+LT+LD+SH+ H D + L + +DLS+N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGA 148
Query: 297 LSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
++++ LK L+I + D E P
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGV---------------------HDYR--GIEDFP---- 181
Query: 357 VHFCKLVKLDISHNQI 372
KL +L I
Sbjct: 182 ----KLNQLYAFSQTI 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 67/278 (24%)
Query: 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI 288
C ++ S Q + V +S+ + +LDLSHNN + E +LTNL
Sbjct: 18 CASN-----ILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLR--AEWTPTRLTNLH 67
Query: 289 VLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L LSHN L+ + F+ L+ LD+S N+ ++
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD---------------------EF 106
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQTFSMNHNIGMKIPEW-FW 402
F + L L + +N I ++ + LQ ++ N + P
Sbjct: 107 LFSDLQ--------ALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIK 157
Query: 403 YQEFL-CLKELNMSS------TDPFFEHLPIWLLNHMELKEN---------GVFSNLISL 446
L L L++SS + LP W+ N + L N +FS+
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217
Query: 447 HMQNTAAVMSNV-----SQLKYLKNIKYLNCSNDIDHR 479
+ + ++ +L + ++ + NCS +
Sbjct: 218 QLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESA 255
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
+ +++ L LS+ L+ + E + +L LE L + +N + + +F ++ L+ L +S N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 556 KLTMLPDG-FVMLSNLT 571
+++ P + L
Sbjct: 147 QISRFPVELIKDGNKLP 163
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDI--GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
S L LS+ L+ + + L L L +SHN + + +F + +L+ LD+S N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
L L + F L L
Sbjct: 99 HLHTLDEFLFSDLQALEVLL 118
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+L +LDVS+N+LT LP G L L Y
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 429 LNHMELKENGVFSNLISL--------HMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
L+ EL + V L L +Q+ + + L L ++
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL----DVSF-------- 109
Query: 481 SQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP 538
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP
Sbjct: 110 -----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 539 ES-FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L++L L + N L +P GF L +
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
+ T+L LS N + + T L L+L +L++L VL LD+SHN
Sbjct: 31 KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87
Query: 318 NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+S+PL Q +P + D+S N S+PL +L +L + N++K L
Sbjct: 88 QLQSLPLLGQ-----TLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ++ D+ LH+ N + ++ + T +L + + TK+ L
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKL-QVDGTLPVL 79
Query: 222 IDTELNCCNKQYHDIFTV----------NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQ 271
L+ + Q + + ++S + + + L L L L N +
Sbjct: 80 --GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + L L L++N L+ELP + L L + N+ ++P
Sbjct: 138 TL---PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 48/277 (17%), Positives = 83/277 (29%), Gaps = 79/277 (28%)
Query: 281 SQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQ 340
K+ + + ++ L+ LP L K L +S N +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYT------------------- 45
Query: 341 SDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEW 400
S +L +L++ ++ L L T ++HN +P
Sbjct: 46 --FSLATLMPYT--------RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
Q L L++S N + G L +
Sbjct: 96 G--QTLPALTVLDVSF-------------NRLTSLPLGALRGL---------------GE 125
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI- 518
L+ L YL N L LP +L +++L L+N L +P +
Sbjct: 126 LQEL----YLKG-------------NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 519 GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
L L+ L + N +Y +P+ F L + N
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVLKELDI 314
L L L++NN + + + L NL L L N L +P F +L +
Sbjct: 146 PTPKLEKLSLANNN---LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 315 SHN 317
N
Sbjct: 203 HGN 205
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKL 557
+ EL+L Q +P+++ N L +++S+N++ L SF+N+ L L +SYN+L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 558 TMLPDG-FVMLSNLTTFY 574
+P F L +L
Sbjct: 91 RCIPPRTFDGLKSLRLLS 108
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFAN 543
N +P + + + LSN +++ + N+ L L +S+N++ +P +F
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
LKSL++L + N ++++P+G F LS L+
Sbjct: 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 514 IPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
IP D+ +L + N+ +P+ +N K L ++D+S N+++ L + F ++ L T
Sbjct: 29 IPRDV------TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 573 FY 574
Sbjct: 83 LI 84
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+LT++DLS+N I+ + +T L+ L LS+N+L +P F K L+ L
Sbjct: 51 SNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 313 DISHNNFESMP 323
+ N+ +P
Sbjct: 108 SLHGNDISVVP 118
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+T L L LS+N + I L +L +L L N +S +P+ F + L L
Sbjct: 76 NMTQLLTLILSYNRLRCI---PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
Query: 314 ISHN 317
I N
Sbjct: 133 IGAN 136
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
LKN++ L ++ N L LP+ + L ++ EL L QL +P + +L
Sbjct: 84 LKNLETLWVTD-----------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L L++ +N++ LP+ F L SLK L + N+L +P+G F L+ L T
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY 497
+ ++ L +Q+ L ++ L ++ N L LP I
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-----------NKLQTLPAGIFK 82
Query: 498 -LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSY 554
L +++ L +++ +L +P + L+ L +L + N++ LP F +L L L + Y
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 555 NKLTMLPDG-FVMLSNLTTFY 574
N+L LP G F L++L
Sbjct: 143 NELQSLPKGVFDKLTSLKELR 163
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 438 GVF---SNLISLHMQNT--AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP 492
G+F NL +L + + A+ V L N+ L N L LP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGV--FDQLVNLAELRLDR-----------NQLKSLP 125
Query: 493 LSILY-LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKI 549
+ L+ + L L +L +P+ + L L++L + +N++ ++PE F L LK
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 550 LDVSYNKLTMLPDG-FVMLSNLTTFY 574
L + N+L +P+G F L L
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQ 211
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 224 TELNCCNKQY----HDIFT-------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQD 272
L + + +F + L + + + LT LT L L +N Q
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 273 INFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + + KLT+L L L +N+L +P+ F LK L + +N + +P
Sbjct: 148 L---PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+LT L +L L+ N Q + + ++L NL L ++ NKL LP F L EL
Sbjct: 58 HRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 313 DISHNNFESMP 323
+ N +S+P
Sbjct: 115 RLDRNQLKSLP 125
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDL N + +LT L +L L+ NKL LP F K L+ L ++
Sbjct: 37 ADTKKLDLQSNKLSSL---PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N +++P+ + ++ + N +S+P + KL L + +N+++ L
Sbjct: 94 DNKLQALPIGVFDQ-----LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT+L L L +N + V E KLT L L L +N+L +P+ F + + LK L
Sbjct: 155 KLTSLKELRLYNNQ---LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 314 ISHN 317
+ N
Sbjct: 212 LQEN 215
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 223 DTELNCCNKQYHDI-------FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
+ + K I T+ L + + L N++ + +S + +
Sbjct: 13 EEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT--LQQ 70
Query: 276 VQESMSQKLTNLIVLDLSHNK-LSELPD--FLNFKVLKELDISHNNFESMPLC-----LQ 327
++ L+ + +++ + + L+ + +LK L I + + P
Sbjct: 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Query: 328 VHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ F + I + I N F+ + + + L + +N +
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCN-------ETLTLKLYNNGFTSVQ 172
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 56/234 (23%)
Query: 362 LVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF- 420
L + ++ + FS N + + +S
Sbjct: 33 TQTLKLIETHLRTIPS-------HAFSNLPN----------------ISRIYVSIDVTLQ 69
Query: 421 ------FEHLP----IWLLNHMELK--ENGVFSNLISL---HMQNTA-AVMSNVSQLKYL 464
F +L I + N L + L L + NT + +++++
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129
Query: 465 KNIKYLNCS--NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
L + + F + E L L N + N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNET----------LTLKLYNNGFTSVQGYAFNGT 179
Query: 523 CLEKLNISHNKVYKL--PESFANLKS-LKILDVSYNKLTMLP-DGFVMLSNLTT 572
L+ + ++ NK + ++F + S +LDVS +T LP G L L
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 498 LSSIQELHLS-NVQLNCIPEDI-GNLICLEKLNISHNKVYKL--PESFANLKSLKILDVS 553
L +I +++S +V L + NL + + I + + P++ L LK L +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 554 YNKLTMLPDG--FVMLSNLTTFY 574
L M PD
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILE 136
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 498 LSSIQELHLSNVQLNCIPED--IGNLICLEKLNISHN-KVYKLPE-SFANLKS-LKILDV 552
L ++ L + N L P+ + + L I+ N + +P +F L + L +
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163
Query: 553 SYNKLTMLPDGFVMLSNLTTFY 574
N T + + L Y
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVY 185
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 488 LWELPLSILYLSSIQELHLS-NVQLNCIP-EDIGNLICLEKLNISHNKVYKL-PESFANL 544
+ + ++ EL++ L + D+ L L L I + + + P++F
Sbjct: 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79
Query: 545 KSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L++S+N L L V +L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQELV 109
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 223 DTELNCCNKQYHDIF----------TVNLSHQ-DINFVQESMSQKLTNLTVLDLSHNNHQ 271
+ L C D + + +Q + ++ + L L L + +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-- 67
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNF 319
+ FV L L+LS N L L + L+EL +S N
Sbjct: 68 -LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
+ ++ L +N+ L N L L L L L ++ L + L
Sbjct: 21 LDSLHHLPGAENLTELYIENQ----------QHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 514 IPEDI-GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ D L +LN+S N + L SL+ L +S N L
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
++L+ + + ++N Q + +Q TNL L LSHN++S+L + L+EL +
Sbjct: 38 KELSGVQNFNGDNSNIQSLAGMQ-----FFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92
Query: 315 SHNNFESMP----LCLQVHFYVHIPYKHSQSDISHNNFESM-PLCLQVHFCKLVKLDISH 369
+ N +++ CL + + +N L H L L I +
Sbjct: 93 NRNRLKNLNGIPSACLS------------RLFLDNNELRDTDSLI---HLKNLEILSIRN 137
Query: 370 NQIKILHKPRCTHTLQTFSMNHN 392
N++K + L+ ++ N
Sbjct: 138 NKLKSIVMLGFLSKLEVLDLHGN 160
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L NL +L + +N + I + L+ L VLDL N+++ K + +D+
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLG-----FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 315 SHNNFESMPLCLQVHFYVHIPYK 337
+ + P+ Q Y+ K
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVK 202
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 81/312 (25%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L N +L + D+ +E L+ + + ++ + L F LKEL +
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQKE-----LSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
SHN SD+S + + KL +L ++ N++K
Sbjct: 71 SHNQI---------------------SDLS--PLKDLT--------KLEELSVNRNRLKN 99
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMEL 434
L + L +++N + TD HL
Sbjct: 100 L-NGIPSACLSRLFLDNN--------------------ELRDTDS-LIHLK--------- 128
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPL 493
NL L ++N + ++ L +L ++ L+ N+I + + + + L
Sbjct: 129 -------NLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 494 SILYLSSIQELHLSNVQ-LNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILD 551
+ + + + N + + G I IS+ Y + +
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWI--SPYYISNGGSYVDGCVLWELPVYTDEVS 237
Query: 552 VSYNKLTMLPDG 563
+++ + +
Sbjct: 238 YKFSEYINVGET 249
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 32/149 (21%)
Query: 456 SNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLS---------ILYLSSIQELH 505
+ V L N N + SQ ++ + + + ++++ELH
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELH 69
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP--------------------ESFANLK 545
LS+ Q++ + + +L LE+L+++ N++ L +S +LK
Sbjct: 70 LSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK 128
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L+IL + NKL + LS L
Sbjct: 129 NLEILSIRNNKLKSI-VMLGFLSKLEVLD 156
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 42/215 (19%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD-- 418
VK ++ + L + +Q F+ +++ + Q F LKEL++S
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGM---QFFTNLKELHLSHNQIS 76
Query: 419 --PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
+ L L L + + N++ + + L N
Sbjct: 77 DLSPLKDLT----------------KLEELSVNRNR--LKNLNGIP-SACLSRLFLDN-- 115
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
N L + S+++L +++ L + N +L I +G L LE L++ N++
Sbjct: 116 ---------NELRDTD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN 164
Query: 537 LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
LK + +D++ K P + L
Sbjct: 165 T-GGLTRLKKVNWIDLTGQKCVNEPVKY--QPELY 196
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 31/264 (11%), Positives = 86/264 (32%), Gaps = 64/264 (24%)
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
++++ + ++ + +D+ + + +
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSV---------------------TDLV--SQKEL 40
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
+ + ++ I+ L + L+ ++HN +I + ++ L+E
Sbjct: 41 S--------GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN---QISDLSPLKDLTKLEE 89
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
L+++ N ++ + L L + N + + L +LKN++ L+
Sbjct: 90 LSVNR-------------NRLKNLNGIPSACLSRLFLDNNE--LRDTDSLIHLKNLEILS 134
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
N N L + + +LS ++ L L ++ + L + ++++
Sbjct: 135 IRN-----------NKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181
Query: 532 NKVYKLPESFANLKSLKILDVSYN 555
K P L I + +
Sbjct: 182 QKCVNEPVK--YQPELYITNTVKD 203
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 35/137 (25%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
V L+ + I Q + LDL I E++ L +D S N++
Sbjct: 2 VKLTAELIE--QAAQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIR 55
Query: 299 ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
+L F + LK L +++N I +++P
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICR---------------------IGEGLDQALP------ 88
Query: 359 FCKLVKLDISHNQIKIL 375
L +L +++N + L
Sbjct: 89 --DLTELILTNNSLVEL 103
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+EL L ++ I L + ++ S N++ KL + F L+ LK L V+ N++
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI 76
Query: 558 TMLPDGFV-MLSNLTTFY 574
+ +G L +LT
Sbjct: 77 CRIGEGLDQALPDLTELI 94
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ +++ I + E + Q L +LT L L++N+ ++ + L +L L + N +
Sbjct: 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRNPV 125
Query: 298 SELPD-----FLNFKVLKELD 313
+ ++ LD
Sbjct: 126 TNKKHYRLYVIYKVPQVRVLD 146
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNL 521
K ++ ++ SN N + EL L S+ L L ++ +P+ + L
Sbjct: 55 YKKLRRIDLSN-----------NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L+ L ++ NK+ L +F +L +L +L + NKL + G F L + T +
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS+ I+ + Q L +L L L N I + +S+ + L +L +L L+ NK++
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNANKINC 118
Query: 300 LPD--FLNFKVLKELDISHNNFESMP 323
L F + L L + N +++
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIA 144
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNK 556
+I E+ L + IP L ++++S+N++ +L +F L+SL L + NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 557 LTMLPDG-FVMLSNLTTFY 574
+T LP F L +L
Sbjct: 92 ITELPKSLFEGLFSLQLLL 110
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
L +DLS+N I+ + Q L +L L L NK++ELP F L+ L
Sbjct: 53 SPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 313 DISHNNFESMP 323
++ N +
Sbjct: 110 LLNANKINCLR 120
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 514 IPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
+PE I ++ + N + +P +F+ K L+ +D+S N+++ L F L +L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 572 TFY 574
+
Sbjct: 84 SLV 86
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L I + +S+ + L +L +L L+ N IN ++ Q L NL +L L NKL
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 300 LPD--FLNFKVLKELDISHNNFE 320
+ F + ++ + ++ N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 55/350 (15%), Positives = 98/350 (28%), Gaps = 104/350 (29%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFLNF-KVLKE 311
++ LD+ D + + L V+ L L+E + L L E
Sbjct: 3 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
L++ N + + LQ CK+ KL + +
Sbjct: 61 LNLRSNE------------------------LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS---TDPFFEHL---- 424
+ C T L+EL++S D + L
Sbjct: 97 LTGAG---CGVLSSTLRTLPT----------------LQELHLSDNLLGDAGLQLLCEGL 137
Query: 425 --PIWLLNHMELKENGV--------------FSNLISLHMQNT----AAVMSNVSQLKYL 464
P L ++L+ + + L + N A V LK
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197
Query: 465 K-NIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
++ L S + +D ++ +S++EL L + N + + +
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIV-------ASKASLRELALGS---NKLGDVGMAEL 247
Query: 523 C---------LEKLNISHNK-----VYKLPESFANLKSLKILDVSYNKLT 558
C L L I L +SLK L ++ N+L
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 106/368 (28%)
Query: 252 SMSQKLTNLTVLDLSHNNHQDINFVQ--ESMSQKLTNLIVLDLSHNKLSE-----LPDFL 304
S + L L L LS N D E + L L L + LS L L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166
Query: 305 -NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLV 363
KEL +S+N+ I+ + L+ C+L
Sbjct: 167 RAKPDFKELTVSNND------------------------INEAGVRVLCQGLKDSPCQLE 202
Query: 364 KLDISHNQIKILHKPRCTHTL-QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFE 422
L + + L + + L+EL + S
Sbjct: 203 ALKLESCGV----TSDNCRDLCGIVASKAS----------------LRELALGSNKLGDV 242
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQN---TAAVMSNVSQ-LKYLKNIKYLN-CSNDID 477
+ L L + S L +L + TA ++ + L+ +++K L+ N++
Sbjct: 243 G--MAELCPGLLHPS---SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
Query: 478 HRKSQDFVNVLWE--LPLSILYLS--------------------SIQELHLSNVQLNCIP 515
++ L E L L++ + EL +SN N +
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN---NRL- 353
Query: 516 EDIG-NLIC---------LEKLNISHNKV-----YKLPESFANLKSLKILDVSYNKLTML 560
ED G +C L L ++ V L + SL+ LD+S N L
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG-- 411
Query: 561 PDGFVMLS 568
G + L
Sbjct: 412 DAGILQLV 419
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 36/131 (27%)
Query: 252 SMSQKLTNLTVLDLSHNNHQD--INFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL 304
S+ + L L +S+N +D + + + + Q + L VL L+ +S+ L L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394
Query: 305 -NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC--LQVHFCK 361
L+ELD+S+N + + L ++ C
Sbjct: 395 LANHSLRELDLSNNCLG--------------------------DAGILQLVESVRQPGCL 428
Query: 362 LVKLDISHNQI 372
L +L +
Sbjct: 429 LEQLVLYDIYW 439
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-09
Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 38/174 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
I +E S T ++L H I + ++S L L LS N + +
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLST-LKACKHLALSTNNIEK 62
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ + L+ L + N + + N +++
Sbjct: 63 ISSLSGMENLRILSLGRNLIKKI-----------------------ENLDAVA------- 92
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
L +L IS+NQI L L+ M++N KI W E L L+
Sbjct: 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNN---KITNW---GEIDKLAALD 140
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
+ ++ ++ L + + L LS + I + + L L++ N + K+ A
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L+ L +SYN++ L G L NL Y
Sbjct: 94 TLEELWISYNQIASL-SGIEKLVNLRVLY 121
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 503 ELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
ELH + + + L + L +S N + K+ S + +++L+IL + N + + +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87
Query: 563 GFVMLSNLTTFY 574
+ L +
Sbjct: 88 LDAVADTLEELW 99
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+ +++ L L + I LE+L IS+N++ L L +L++L +S NK+
Sbjct: 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKI 127
Query: 558 TMLPD--GFVMLSNLTTFY 574
T + L L
Sbjct: 128 TNWGEIDKLAALDKLEDLL 146
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L I + E++ L L +S+N ++ ++ KL NL VL +S+NK++
Sbjct: 76 SLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGIE-----KLVNLRVLYMSNNKITN 129
Query: 300 LPDFL---NFKVLKELDISHN 317
+ L++L ++ N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 456 SNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
+S L ++N++ L+ N++ ++ +++EL +S Q+ +
Sbjct: 61 EKISSLSGMENLRILSLGR-----------NLIKKIENLDAVADTLEELWISYNQIASL- 108
Query: 516 EDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLT 558
I L+ L L +S+NK+ E A L L+ L ++ N L
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
N S+ I ++E + + + + L+ N +++ Q M + L +L L L N+++
Sbjct: 63 NFSNNKITDIEEGAFEGASGVNEILLTSNRLENV---QHKMFKGLESLKTLMLRSNRITC 119
Query: 300 LPD--FLNFKVLKELDISHNNFESMP 323
+ + F+ ++ L + N ++
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVA 145
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 450 NTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSN 508
N V+ K L ++ +N SN N + ++ S + E+ L++
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSN-----------NKITDIEEGAFEGASGVNEILLTS 90
Query: 509 VQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FV 565
+L + + L L+ L + N++ + SF L S+++L + N++T + G F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 566 MLSNLTTFY 574
L +L+T
Sbjct: 151 TLHSLSTLN 159
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
EL L+N + + L L K+N S+NK+ + E +F + + ++ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L + F L +L T
Sbjct: 92 RLENVQHKMFKGLESLKTLM 111
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKEL 312
+KL L ++ S+N I ++E + + + + L+ N+L + F + LK L
Sbjct: 54 KKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
Query: 313 DISHNNFESMP 323
+ N +
Sbjct: 111 MLRSNRITCVG 121
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
L L++N + + +KL L ++ S+NK++++ + F + E+ ++
Sbjct: 32 QYTAELRLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89
Query: 316 HNNFESMP 323
N E++
Sbjct: 90 SNRLENVQ 97
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ + VQ M + L +L L L N I V L+++ +L L N+++
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 300 LPD--FLNFKVLKELDISHNNF 319
+ F L L++ N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L + +LN N L L + L+ + L L+N QL +P + +L
Sbjct: 58 LTKLTWLNLDY-----------NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L+KL + N++ LP F L LK L ++ N+L +P G F L+NL T
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L + L +N N L LPL + +L+ + +L+L QL +P + L
Sbjct: 82 LTELGTLGLAN-----------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++L ++ N++ +P F L +L+ L +S N+L +P G F L L T
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
LT L L L N + + + +LT L L L+ N+L +P F L+ L
Sbjct: 104 DHLTQLDKLYLGGNQLKSL---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160
Query: 313 DISHNNFESMP 323
+S N +S+P
Sbjct: 161 SLSTNQLQSVP 171
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L +++EL+L + QL +P + +L L L++ N++ LP + F L LK L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 556 KLTMLPDGFVMLSNLTTFY 574
KLT LP G L++LT
Sbjct: 123 KLTELPRGIERLTHLTHLA 141
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L N+K L + N L LP+ + L+ + L L QL +P + L
Sbjct: 63 LINLKELYLGS-----------NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L++L + NK+ +LP L L L + N+L +P G F LS+LT Y
Sbjct: 112 VHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVLKELDI 314
LT LTVLDL N + + ++ +L +L L + NKL+ELP L L +
Sbjct: 86 SLTQLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 315 SHNNFESMP 323
N +S+P
Sbjct: 143 DQNQLKSIP 151
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPED--IGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
EL L++ +L I D G L L KL + N++ + + F ++ L + N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
K+ + + F+ L L T
Sbjct: 89 KIKEISNKMFLGLHQLKTLN 108
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L + +L L QL I + +++L + NK+ ++ F L LK L++ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+++ + G F L++LT+
Sbjct: 113 QISCVMPGSFEHLNSLTSLN 132
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+L +L L+L N I + + + +++ L L NK+ E+ + FL LK L
Sbjct: 51 GRLPHLVKLELKRNQLTGI---EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 313 DISHNNFESMP 323
++ N +
Sbjct: 108 NLYDNQISCVM 118
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGN-L 521
L N+ YL + N L LP + L++++EL L QL +P+ + + L
Sbjct: 84 LTNLTYLILTG-----------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L LN++HN++ LP+ F L +L LD+SYN+L LP+G F L+ L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+SI ++ +N + + I L + L + NK++ + + L +L L ++ N+L
Sbjct: 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97
Query: 558 TMLPDG-FVMLSNLTTFYAQRK 578
LP+G F L+NL
Sbjct: 98 QSLPNGVFDKLTNLKELVLVEN 119
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 429 LNHMELKENGVF---SNLISLHMQNT--AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483
L +L + +NL L + ++ + V L N+K L
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVE--------- 118
Query: 484 FVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES- 540
N L LP + L+++ L+L++ QL +P+ + L L +L++S+N++ LPE
Sbjct: 119 --NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
F L LK L + N+L +PDG F L++L +
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 25/199 (12%)
Query: 129 SGTQDTITNNSVEMDENTVKTEALSTRTFCDHELQSIED-DILVQLECLHIDNNKAQEYI 187
+ + SV + ++ + +++S++ L + L + NK +
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 188 VSMNVDRTPGFKLQNNDNDQNTKV-TNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDI 246
+ L N Q + D L EL Q +
Sbjct: 80 ALKELTNLTYLILTGN---QLQSLPNGVFDKLTNL--KELVLVENQ-------------L 121
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FL 304
+ + + KLTNLT L+L+HN Q + + + KLTNL LDLS+N+L LP+ F
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 305 NFKVLKELDISHNNFESMP 323
LK+L + N +S+P
Sbjct: 179 KLTQLKDLRLYQNQLKSVP 197
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ L VLD +N I E ++ + NL L L + L + + LK+L++
Sbjct: 24 AAVREL-VLDNCKSNDGKI----EGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL 78
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP--LCLQVHFCKLVKLDISHNQI 372
S N L + ++S N + + L+ L LD+ + ++
Sbjct: 79 SENRIFGGLDMLAEKL-----PNLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL--NFKV 308
E ++ + NL L L + ++ + KL L L+LS N++ D L
Sbjct: 42 EGLTAEFVNLEFLSLINVGLISVSNL-----PKLPKLKKLELSENRIFGGLDMLAEKLPN 96
Query: 309 LKELDISHNNFESM 322
L L++S N + +
Sbjct: 97 LTHLNLSGNKLKDI 110
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN--CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547
L L ++++EL L N + N I + LE L++ + + + + L L
Sbjct: 15 HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKL 73
Query: 548 KILDVSYNKLTMLPDGFV-MLSNLTTFY 574
K L++S N++ D L NLT
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLN 101
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS I + +++KL NLT L+LS N +DI+ ++ +KL L LDL + ++
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEV 132
Query: 298 SELPD-----FLNFKVLKELD 313
+ L D F L LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGN-LICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L+S+ +L+L +L +P + N L L LN+S N++ LP F L LK L ++ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L LPDG F L+ L
Sbjct: 111 QLQSLPDGVFDKLTQLKDLR 130
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L ++ L N L LP + L+S+ L+LS QL +P + L
Sbjct: 51 LTSLTQLYLGG-----------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++L ++ N++ LP+ F L LK L + N+L +PDG F L++L +
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
+ L L L +P + L L +L + NK+ LP F L SL L++S N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L LP+G F L+ L
Sbjct: 88 LQSLPNGVFDKLTQLKELA 106
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT+LT L+LS N Q + + KLT L L L+ N+L LPD F LK+L
Sbjct: 74 KLTSLTYLNLSTNQLQSL---PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 314 ISHNNFESMP 323
+ N +S+P
Sbjct: 131 LYQNQLKSVP 140
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 51/340 (15%), Positives = 106/340 (31%), Gaps = 81/340 (23%)
Query: 258 TNLTVLDLSHNNHQD--INFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL--NFKV 308
+T LDLS NN + ++ + ++ L+LS N L L L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES---MPLC--LQVHFCKLV 363
+ L++S N V IP+ + D+ N+F S +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 364 KLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH 423
L++ N + + + L + LN+
Sbjct: 142 SLNLRGNDL----GIKSSDELIQILAAIPAN--------------VNSLNLRG------- 176
Query: 424 LPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483
N+ L L + S + + L L +N + + +
Sbjct: 177 ------NN--LASKNC----AEL----AKFLASIPASVTSL----DL-SANLLGLKSYAE 215
Query: 484 FVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVYK-- 536
+ +P + + L+L L+ + +L L+ + + ++ V
Sbjct: 216 LAYIFSSIP------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 537 ------LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
L +F N++ + ++D + ++ P + +SNL
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIH--PSHSIPISNL 307
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 250 QESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL 309
E ++ +++ L L ++ + E ++ + L L + L+ + + L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKL 66
Query: 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP--LCLQVHFCKLVKLDI 367
K+L++S N L + ++S N + + L+ L LD+
Sbjct: 67 KKLELSDNRVSGGLEVLAEKC-----PNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDL 120
Query: 368 SHNQI 372
+ ++
Sbjct: 121 FNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 490 ELPLSILYLSSIQELHLSNVQLNC--IPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547
L L S ++EL L N + N + LE L+ + + + + L L
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKL 66
Query: 548 KILDVSYNKLTMLPDGFV-MLSNLTTFY 574
K L++S N+++ + NLT
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLN 94
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS ++ E +++K NLT L+LS N +D++ ++ +KL NL LDL + ++
Sbjct: 68 KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEV 125
Query: 298 SELPD-----FLNFKVLKELD 313
+ L D F L LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFA-NLKSLKILDVSYNK 556
++ L NV L I ++ L L+KL +S N+V E A +L L++S NK
Sbjct: 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 557 LTMLPD 562
+ L
Sbjct: 100 IKDLST 105
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 14/158 (8%)
Query: 176 LHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN----- 230
I + + + + +N P L +Q ++ M + L+
Sbjct: 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141
Query: 231 -KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
+I V + + + + L L+LS+N ++ + S+ QK NL +
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDM-SSIVQKAPNLKI 200
Query: 290 LDLSHNKLSELPDF--LNFKVLKELDISHNNFESMPLC 325
L+LS N+L + + L+EL + N LC
Sbjct: 201 LNLSGNELKSERELDKIKGLKLEELWLDGN-----SLC 233
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L+ + +L LS Q+ +P+ + L L L + NK+ LP F L LK L + N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L +PDG F L++L +
Sbjct: 111 QLKSVPDGIFDRLTSLQKIW 130
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 502 QELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTM 559
L L + +L +P + L L KL++S N++ LP+ F L L IL + NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 560 LPDG-FVMLSNLTTFY 574
LP+G F L+ L
Sbjct: 91 LPNGVFDKLTQLKELA 106
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
KLT LT L LS N Q + + + KLT L +L L NKL LP+ F LKEL
Sbjct: 49 DKLTQLTKLSLSQNQIQSL---PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Query: 313 DISHNNFESMP 323
+ N +S+P
Sbjct: 106 ALDTNQLKSVP 116
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
+ Q L L+N Q+ + + +L+ L++L + NK+ +P F L L LD++ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L +P G F L +LT Y
Sbjct: 93 LKSIPRGAFDNLKSLTHIY 111
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLT 558
++ N++L +P I ++L +++N++ KL F +L +L+ L + NKLT
Sbjct: 13 DQTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70
Query: 559 MLPDG-FVMLSNLTTFY 574
+P G F L+ LT
Sbjct: 71 AIPTGVFDKLTQLTQLD 87
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 48/353 (13%), Positives = 107/353 (30%), Gaps = 54/353 (15%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDLSHNKLSELPDFLNF-KV 308
++Q T+L VL+ I+ E++++ +L+ + + ++ EL F
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244
Query: 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
L+E + + + P K + +S+ MP+ L ++ KLD+
Sbjct: 245 LEEFCGGS--LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLL 301
Query: 369 HNQI---KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC--LKELNMSSTDPFFEH 423
+ + + L+ + IG + E C LK L +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA---QYCKQLKRLRIERGA----D 354
Query: 424 LPIWLLNHMELKENGVFS------NLISLHMQNT-------AAVMSNVSQLKYLKNIKYL 470
+ + G+ + L + + + ++ + + L + +
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414
Query: 471 NCSNDIDHRKSQDFVNVLWELP-LSILYLSS-------------------IQELHLSNVQ 510
D ++L L ++ + L V
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474
Query: 511 L--NCIPEDIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSYNKLTM 559
+ E L+KL + + + L SL+ L V + +M
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
++ Q L+L + Q+ + + L L +L++ +N++ LP F L L L ++ N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L +P G F L +LT +
Sbjct: 90 LKSIPRGAFDNLKSLTHIW 108
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLT 558
S + S L +P I + L + N++ KL F L L LD+ N+LT
Sbjct: 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 559 MLPDG-FVMLSNLTTFY 574
+LP G F L+ LT
Sbjct: 68 VLPAGVFDKLTQLTQLS 84
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 46/365 (12%), Positives = 104/365 (28%), Gaps = 112/365 (30%)
Query: 257 LTNLTV--LDLSHNN--HQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL-NF 306
+ ++ L + +D V + + ++ + LS N + L + + +
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 307 KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLD 366
K L+ + S + D + L KL +
Sbjct: 60 KDLEIAEFSDIFTGRV------------------KDEIPEALRLLLQALLKC-PKLHTVR 100
Query: 367 ISHNQI---------KILHKPRCTHTLQTFSMNHN-IG-----------MKIPEWFWYQE 405
+S N L K L+ +++N +G ++ +
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHT---PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157
Query: 406 FLCLKELNMSSTDPFFEHLPIWLLNHME----------LKENGVFSNLISLHMQNT---- 451
L+ + N +E + + L ++ M
Sbjct: 158 APPLRSIICGR-------------NRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRP 201
Query: 452 AAVMSNVSQ-LKYLKNIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV 509
+ + + L Y + +K L+ N H S L P +++EL L++
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-------NLRELGLND- 253
Query: 510 QLNCIPEDIGNLIC----------LEKLNISHNK-----VYKLPESFA-NLKSLKILDVS 553
+ + L+ L + +N+ V L + L L+++
Sbjct: 254 --CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311
Query: 554 YNKLT 558
N+ +
Sbjct: 312 GNRFS 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.86 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.79 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.73 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.62 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.56 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.47 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.45 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.41 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.39 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.25 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.24 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.23 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.13 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.1 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.7 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.62 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.47 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.45 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.32 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.31 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.84 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.76 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.66 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.64 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.51 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.5 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 94.58 |
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=367.68 Aligned_cols=420 Identities=17% Similarity=0.166 Sum_probs=266.1
Q ss_pred cchhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccc----------
Q psy6452 143 DENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNT---------- 209 (594)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~---------- 209 (594)
+....+..+|+++++++|.++.+++.. +++|++|+|++|+++++.+. .+.+++.++...+......
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccC
Confidence 445556678889999999998886554 77899999999999877643 3444444443333322222
Q ss_pred cccccccccccccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCC--EEECCCCCCCCccccchhhhhc----
Q psy6452 210 KVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLT--VLDLSHNNHQDINFVQESMSQK---- 283 (594)
Q Consensus 210 ~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~--~L~Ls~N~l~~i~~l~~~~~~~---- 283 (594)
.-...++++.|.+.......+..+++|++|++++|.++.+++..|..+++|+ .|++++|.+++ +++..|..
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~---~~~~~~~~~~L~ 205 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG---IEPGAFDSAVFQ 205 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE---ECTTTTTTCEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc---cChhHhhhcccc
Confidence 2244556666666654334444478888888888888888777788888888 78888887654 22222211
Q ss_pred ---------------------------------------------CC--CCCEEEcCCCCCCCCCC--cCCCcCccEEec
Q psy6452 284 ---------------------------------------------LT--NLIVLDLSHNKLSELPD--FLNFKVLKELDI 314 (594)
Q Consensus 284 ---------------------------------------------l~--~L~~L~Ls~N~l~~lp~--~~~l~~L~~L~L 314 (594)
+. +|+.|++++|.++.++. |..+++|++|++
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 11 56667777777776653 667777777777
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC-CCCc--cccCCccEEeCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI-LHKP--RCTHTLQTFSMNH 391 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~--~~~~~L~~L~L~~ 391 (594)
++|.++.+|..+.. .++|++|++++|.++.+++..+.++++|++|++++|.+.+ ++.. ...++|++|++++
T Consensus 286 ~~n~l~~lp~~l~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 286 TATHLSELPSGLVG------LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp TTSCCSCCCSSCCS------CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred cCCccCCCChhhcc------cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 77777777765432 2567777777777777766666677777777777777663 3322 2335677777777
Q ss_pred CCCCCCCc-hhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc-ccccCCCcce
Q psy6452 392 NIGMKIPE-WFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS-QLKYLKNIKY 469 (594)
Q Consensus 392 N~~~~ip~-~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 469 (594)
|.+..++. ...+..+++|+.|++++|. +.+..|. .+..+++|+.|++++|.+++..+. .+..+++|++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTE---------AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTT---------TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CccccccCcchhcccCCCCCEEECCCCc-CCcCCHH---------HhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 76665531 1113567777777777764 2222222 234455667777777766655443 3666667777
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc--cc--ccccCCCCCcEEEccCCCCccc-CccccCC
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC--IP--EDIGNLICLEKLNISHNKVYKL-PESFANL 544 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~--ip--~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l 544 (594)
|++++| ...+..|..+..+++|++|++++|.++. ++ ..+..+++|++|+|++|+++.+ |..|..+
T Consensus 430 L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 430 LNLSHS----------LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp EECTTC----------CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred EECCCC----------ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 777665 3333445556666777777777777663 22 3466677777777777777765 4466777
Q ss_pred CCCCEEECcCCCCCc-cCcccccCCCCcEEEccCCCCcccCHhHHhhhhC
Q psy6452 545 KSLKILDVSYNKLTM-LPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~-ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 593 (594)
++|++|+|++|+++. .|..+..+++| +|++++|+++.+++..|..+.+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 777777777777764 34556677777 7777777777777666665544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=384.13 Aligned_cols=415 Identities=21% Similarity=0.261 Sum_probs=289.0
Q ss_pred hccCccEEecCCCCCcc-cChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCcc-------c-cccccccc
Q psy6452 148 KTEALSTRTFCDHELQS-IEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQ-------N-TKVTNAMD 216 (594)
Q Consensus 148 ~~~~L~~l~l~~n~l~~-ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~-------~-~~~~~~~~ 216 (594)
...+|+.+++++|.++. +|..+ +++|++|+|++|++++..+...+..+..+.+.+..... . ..-...++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 33455555555555542 23222 45556666666655554433333333333332221110 0 12234445
Q ss_pred ccccccccccccCccCCCcccEEEccCCCCc-ccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCC-CCCEEEcCC
Q psy6452 217 IAMELIDTELNCCNKQYHDIFTVNLSHQDIN-FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT-NLIVLDLSH 294 (594)
Q Consensus 217 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~-~L~~L~Ls~ 294 (594)
++.|.+.+..+..+..+++|++|++++|+++ .++...|..+++|++|++++|++++ .+|..+ ..++ +|++|++++
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l-~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESL-TNLSASLLTLDLSS 377 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE--CCCTTH-HHHTTTCSEEECCS
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc--cccHHH-HhhhcCCcEEEccC
Confidence 5555555555666666666666666666665 5555555666666666666666432 233333 3333 666666666
Q ss_pred CCCC-CCC-CcCC--CcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC
Q psy6452 295 NKLS-ELP-DFLN--FKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369 (594)
Q Consensus 295 N~l~-~lp-~~~~--l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 369 (594)
|.++ .+| .+.. +++|++|++++|.+++ +|..+.. .++|+.|++++|.+++..+..|.++++|+.|++++
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 6665 233 3333 5677777777777774 5554432 26889999999998876666777889999999999
Q ss_pred CCCCCCCCcc--ccCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEE
Q psy6452 370 NQIKILHKPR--CTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL 446 (594)
Q Consensus 370 N~l~~l~~~~--~~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L 446 (594)
|.+++..+.. ..++|++|++++|.+. .+|..+ ..+++|+.|++++|+ +.+.+|.++ ..+++|++|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~p~~~---------~~l~~L~~L 519 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNR-LTGEIPKWI---------GRLENLAIL 519 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC-CCSCCCGGG---------GGCTTCCEE
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCc-cCCcCChHH---------hcCCCCCEE
Confidence 9988655443 3468999999999776 556654 788999999999875 777788755 446799999
Q ss_pred EcCCccccccCccccccCCCcceEeCCCCcCccccc-cc-----------------------------------------
Q psy6452 447 HMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ-DF----------------------------------------- 484 (594)
Q Consensus 447 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~----------------------------------------- 484 (594)
++++|.+++..|..+..+++|++|++++|.+..... .+
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999986542111 00
Q ss_pred ------------------ccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCC
Q psy6452 485 ------------------VNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANL 544 (594)
Q Consensus 485 ------------------~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 544 (594)
....+.+|..+..+++|+.|+|++|+++ .+|..++++++|+.|+|++|+++ .+|..|+.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0123445667778899999999999999 88999999999999999999999 789999999
Q ss_pred CCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCccc
Q psy6452 545 KSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
++|++|||++|+++ .+|..+..+++|++|++++|+++..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999999 8899999999999999999998753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=386.83 Aligned_cols=419 Identities=20% Similarity=0.173 Sum_probs=322.2
Q ss_pred hccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccc--cccCCCCCccccCCCCcc-----ccccccccccc
Q psy6452 148 KTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVS--MNVDRTPGFKLQNNDNDQ-----NTKVTNAMDIA 218 (594)
Q Consensus 148 ~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~--~~~~~l~~l~~~~~~~~~-----~~~~~~~~~l~ 218 (594)
...+|+.+++++|.++...+.+ +++|++|+|++|++++..+. .....++.+.+.+..... ...-...++++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 3456667777777775533333 66777777777777765432 222333333332222111 11234456666
Q ss_pred ccccccccccCccCC-CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 219 MELIDTELNCCNKQY-HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 219 ~n~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
.|.+.+.++..+... ++|++|+|++|+++...+..|..+++|++|++++|.+++ .+|...+..+++|++|++++|.+
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCcc
Confidence 777777777766654 888888888888887766777888888888888888543 46766677888888888888888
Q ss_pred C-CCC-CcCCCc-CccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 298 S-ELP-DFLNFK-VLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 298 ~-~lp-~~~~l~-~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
+ .+| .+..++ +|++|++++|.+++ +|..+.. ...++|++|++++|.+++..+..+.++++|++|++++|+++
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ----NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC----STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh----cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 7 666 466665 88888888888875 5544321 11368999999999999666666779999999999999998
Q ss_pred CCCCccc--cCCccEEeCCCCCCC-CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCC
Q psy6452 374 ILHKPRC--THTLQTFSMNHNIGM-KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450 (594)
Q Consensus 374 ~l~~~~~--~~~L~~L~L~~N~~~-~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~ 450 (594)
+..+..+ .++|+.|++++|.+. .+|..+ ..+++|+.|++++|+ +.+.+|..+ ..+++|+.|++++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~-l~~~~p~~l---------~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFND-LTGEIPSGL---------SNCTNLNWISLSN 499 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC-CCSCCCGGG---------GGCTTCCEEECCS
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCc-ccCcCCHHH---------hcCCCCCEEEccC
Confidence 7655443 468999999999776 566655 789999999999975 677777654 4567999999999
Q ss_pred ccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-ccccc------------
Q psy6452 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPED------------ 517 (594)
Q Consensus 451 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~------------ 517 (594)
|++++..|..+..+++|++|++++| ...+.+|..+..+++|+.|++++|.++ .+|..
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N----------~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNN----------SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSS----------CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CccCCcCChHHhcCCCCCEEECCCC----------cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 9999999999999999999999998 677889999999999999999999887 55543
Q ss_pred ----------------------------------------------------------ccCCCCCcEEEccCCCCc-ccC
Q psy6452 518 ----------------------------------------------------------IGNLICLEKLNISHNKVY-KLP 538 (594)
Q Consensus 518 ----------------------------------------------------------~~~l~~L~~L~Ls~N~l~-~lp 538 (594)
+..+++|++|+|++|+++ .+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 334678999999999999 679
Q ss_pred ccccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 539 ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 539 ~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
..++.+++|+.|+|++|+|+ .+|..++.+++|++|+|++|+++...+..+..|..|
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 99999999999999999999 899999999999999999999998777777777654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=369.46 Aligned_cols=473 Identities=16% Similarity=0.150 Sum_probs=282.4
Q ss_pred eceeeeeeecccccccccccccccceeeeceecccccccc-hhhhccCccEEecCCCCCcccChhh---hccCcEEEccC
Q psy6452 105 YGRMICTIMKFGKEITTVLEEDTNSGTQDTITNNSVEMDE-NTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDN 180 (594)
Q Consensus 105 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~ 180 (594)
.|+++.|.+..-..++..+. .....++...|....++. ...+..+|+.+++++|.++.+++.. +++|++|+|++
T Consensus 5 ~~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 5 SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp BSSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred ECCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 35566665544444443322 112223333333223333 3344456777777777777765544 56677777777
Q ss_pred ccccccccc--cccCCCCCccccCCCC-------cccccccccccccccccccccccCccCCCcccEEEccCCCCcccch
Q psy6452 181 NKAQEYIVS--MNVDRTPGFKLQNNDN-------DQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQE 251 (594)
Q Consensus 181 N~i~~~~~~--~~~~~l~~l~~~~~~~-------~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 251 (594)
|+++++++. .....+..+.+..... .....-...++++.|.+....+..+.++++|++|++++|+++.+++
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 777766532 1222333333322211 1112233455666666766666777777788888888888777776
Q ss_pred Hhhh--cCCCCCEEECCCCCCCCcc------------------------------------------------ccchhhh
Q psy6452 252 SMSQ--KLTNLTVLDLSHNNHQDIN------------------------------------------------FVQESMS 281 (594)
Q Consensus 252 ~~f~--~l~~L~~L~Ls~N~l~~i~------------------------------------------------~l~~~~~ 281 (594)
..|. .+++|++|++++|.++++. .+++..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 6554 3467777777777765421 0112233
Q ss_pred hcCC--CCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhcc---------------------------
Q psy6452 282 QKLT--NLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHF--------------------------- 330 (594)
Q Consensus 282 ~~l~--~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~--------------------------- 330 (594)
..++ +|++|++++|.++.++ .|..+++|++|++++|.++++++..+...
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 3333 3888888888887554 47788888888888888876543211100
Q ss_pred -ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC--CCCCcccc----CCccEEeCCCCCCCCCCchhhh
Q psy6452 331 -YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK--ILHKPRCT----HTLQTFSMNHNIGMKIPEWFWY 403 (594)
Q Consensus 331 -~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~----~~L~~L~L~~N~~~~ip~~~~~ 403 (594)
.....++|++|++++|.+++++...|.++++|++|++++|.++ .++...+. ++|+.|++++|.+..++... +
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~ 401 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-F 401 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-T
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-h
Confidence 1122357888888888888888888888888888888888643 33332222 47888888888777775544 4
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc--
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS-- 481 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-- 481 (594)
..+++|+.|++++|. +.+.+|.. .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....
T Consensus 402 ~~l~~L~~L~L~~N~-l~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNE-IGQELTGQ--------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp TTCTTCCEEECCSSC-CEEECCSG--------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred hCCCCCCEEeCCCCc-CccccCcc--------cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 678888888888874 44444421 2233455666666666555555545555555555555444221000
Q ss_pred -ccc------------ccccccCc-ccccCCCCCcEEeCccccCccccc---------cccCCCCCcEEEccCCCCcccC
Q psy6452 482 -QDF------------VNVLWELP-LSILYLSSIQELHLSNVQLNCIPE---------DIGNLICLEKLNISHNKVYKLP 538 (594)
Q Consensus 482 -~~~------------~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~---------~~~~l~~L~~L~Ls~N~l~~lp 538 (594)
..+ .|.+..+| ..+..+++|++|+|++|+++.++. .|.++++|++|+|++|+|+.+|
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 000 02233333 345666777777777777765421 2566777777777777777776
Q ss_pred c-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 539 E-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 539 ~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
. .|.++++|++|+|++|+|+.+|.. |..+++|++|+|++|+++.+++..|.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 5 577777777777777777777665 66777777788877777777777665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=362.21 Aligned_cols=414 Identities=16% Similarity=0.138 Sum_probs=313.7
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
.++.+++++|.++.+++.. +++|++|+|++|+++++.+ ..+.+++.++ .++++.|.+....+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~--------------~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLD--------------TLVLTANPLIFMAE 98 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCC--------------EEECTTCCCSEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccC--------------eeeCCCCcccccCh
Confidence 5679999999999997655 7889999999999988753 3333444433 45556677777778
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
..|.++++|++|++++|+|+.+++..|.++++|++|++++|+++++ +...+..+++|++|++++|.++.++ .|..
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI---KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC---CCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc---CcccccCCcccCEEEcccCcccccChhhhhh
Confidence 8889999999999999999999887889999999999999997764 2222345999999999999999775 3788
Q ss_pred CcCcc--EEeccCCccccCchhhhhccc----------------------------------------------cccCCC
Q psy6452 306 FKVLK--ELDISHNNFESMPLCLQVHFY----------------------------------------------VHIPYK 337 (594)
Q Consensus 306 l~~L~--~L~Ls~N~l~~lp~~~~~~~~----------------------------------------------~~~~~~ 337 (594)
+++|+ +|++++|.++++++..+.... ...+.+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 88898 899999999886654432110 000126
Q ss_pred cceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc-cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcC
Q psy6452 338 HSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416 (594)
Q Consensus 338 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~ 416 (594)
++.|++++|.++.++...|.++++|++|++++|+++.++.. ...++|++|++++|.+..++... +..+++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCC
Confidence 78899999999999988888999999999999999887654 33468999999999888775543 47788888888888
Q ss_pred CCCccCCccHH-Hhhhc-------------c----cccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCc
Q psy6452 417 TDPFFEHLPIW-LLNHM-------------E----LKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478 (594)
Q Consensus 417 n~~~~~~lp~~-~~~~~-------------~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 478 (594)
|. ..+.+|.. +.... . ...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 335 n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--- 410 (606)
T 3t6q_A 335 NT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT--- 410 (606)
T ss_dssp CS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC---
T ss_pred CC-cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC---
Confidence 74 33344332 11100 0 112345566666666666666666666666667777777665
Q ss_pred ccccccccccccCcc-cccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcc--cC--ccccCCCCCCEEEC
Q psy6452 479 RKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYK--LP--ESFANLKSLKILDV 552 (594)
Q Consensus 479 ~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~--lp--~~~~~l~~L~~L~L 552 (594)
...+..|. .+..+++|++|++++|.++.+ |..+..+++|++|+|++|+++. ++ ..+..+++|++|++
T Consensus 411 -------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 411 -------RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp -------CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred -------cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 33333343 377889999999999999865 5568899999999999999985 33 46889999999999
Q ss_pred cCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 553 SYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 553 s~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
++|+++.+ |..+..+++|++|+|++|+++.+++..|..+..|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 99999976 5669999999999999999999999888877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=362.78 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred cccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCccc-c
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCI-P 515 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~i-p 515 (594)
..+++|+.|++++|.+++..+..+..+++|++|++++| ...+ .+|..+..+++|++|+|++|+++.+ |
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC----------cCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 34455555666666555555555555566666666554 2333 2456666677777777777777654 3
Q ss_pred ccccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcccccCC-CCcEEEccCCCCcc
Q psy6452 516 EDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLS-NLTTFYAQRKYWMF 582 (594)
Q Consensus 516 ~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~-~L~~L~L~~N~l~~ 582 (594)
..+..+++|++|+|++|+++.+ |..|..+++|++|+|++|+|+.+|..+..++ +|++|++++|++..
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 4466777777777777777755 5566777777777777777777766666665 47777777777664
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=357.61 Aligned_cols=339 Identities=21% Similarity=0.232 Sum_probs=189.1
Q ss_pred cccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC-CCCCC--C
Q psy6452 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK-LSELP--D 302 (594)
Q Consensus 226 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp--~ 302 (594)
.+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++++. + +..++.+++|++|++++|. +..+| .
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 143 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-V-TSLFPNLTNLQTLRIGNVETFSEIRRID 143 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-S-SCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-h-hhhhhccCCccEEECCCCccccccCHhh
Confidence 3344555666666666666666666665666666666666666654321 1 1234556666666666665 44444 3
Q ss_pred cCCCcCccEEeccCCcccc-Cchhhhhcc------------------ccccCCCcceEEcCCCCCCCCC---hhhhccCC
Q psy6452 303 FLNFKVLKELDISHNNFES-MPLCLQVHF------------------YVHIPYKHSQSDISHNNFESMP---LCLQVHFC 360 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~------------------~~~~~~~L~~L~Ls~N~l~~i~---~~~~~~l~ 360 (594)
|.++++|++|++++|.+++ +|..+.... .....++|++|++++|.+++++ ......++
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 5566666666666666654 333222110 0011245666666666665532 11111222
Q ss_pred CCcEEECC----------------------------CCCCCCCCCc----------------------------------
Q psy6452 361 KLVKLDIS----------------------------HNQIKILHKP---------------------------------- 378 (594)
Q Consensus 361 ~L~~L~Ls----------------------------~N~l~~l~~~---------------------------------- 378 (594)
+|+.|+++ +|.+.++...
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 33333332 2222211000
Q ss_pred ---cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc
Q psy6452 379 ---RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455 (594)
Q Consensus 379 ---~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 455 (594)
...++|+.|++++|.+..+|..+ +..+++|+.|++++|+ +.+.+|... ..+..+++|++|++++|.+++
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENL-MVEEYLKNS------ACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSC-CCHHHHHHH------TCTTSSTTCCEEECTTSCCCC
T ss_pred hhhhhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCc-cccccccch------hhhhccccCcEEEccCCcccc
Confidence 11236778888888888888766 4578889999998875 444443221 123556788888888888877
Q ss_pred cCc--cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCC
Q psy6452 456 SNV--SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533 (594)
Q Consensus 456 ~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 533 (594)
..+ ..+..+++|++|++++| .+..+|..+..+++|++|++++|.|+.+|..+. ++|++|+|++|+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~ 442 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRN-----------TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNN 442 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTC-----------CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSC
T ss_pred cccchhhhhcCCCCCEEECCCC-----------CCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCC
Confidence 643 45788888888888885 445677777777888888888888876665432 344444444444
Q ss_pred CcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 534 VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 534 l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
|+.++ ..+++|++|+|++|+|+.||. ...+++|++|+|++|+++.+++..|..+
T Consensus 443 l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 443 LDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred hhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 44432 234445555555555554443 2344445555555555554444444433
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=366.45 Aligned_cols=329 Identities=16% Similarity=0.219 Sum_probs=235.3
Q ss_pred cccCcc--CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcC------CCCCEEEcCCCC
Q psy6452 226 LNCCNK--QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKL------TNLIVLDLSHNK 296 (594)
Q Consensus 226 ~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l------~~L~~L~Ls~N~ 296 (594)
+|..+. ++++|++|+|++|++....+..|.++++|++|++++|+ +++ ..+|..+ ..+ ++|++|++++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-~~lp~~~-~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-EQLKDDW-QALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-HHHHHHH-HHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-ccchHHH-HhhhccccCCCCCEEECCCCc
Confidence 455555 67777777777777765555566777777777777776 543 0244433 333 777777777777
Q ss_pred CCCCCC---cCCCcCccEEeccCCccc-cCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC-CcEEECCCCC
Q psy6452 297 LSELPD---FLNFKVLKELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK-LVKLDISHNQ 371 (594)
Q Consensus 297 l~~lp~---~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~~L~Ls~N~ 371 (594)
++.+|. +..+++|++|++++|.++ .+| .+.. .++|+.|++++|.++.+|.. +.++++ |++|++++|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~------l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS------EIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE------EEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC------CCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCc
Confidence 777775 667777777777777777 566 3321 24677777777777776665 446776 7777777777
Q ss_pred CCCCCCccc---cCCccEEeCCCCCCCCC-Cchhhhc-------ccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 372 IKILHKPRC---THTLQTFSMNHNIGMKI-PEWFWYQ-------EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 372 l~~l~~~~~---~~~L~~L~L~~N~~~~i-p~~~~~~-------~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
++.++.... .++|+.|++++|.+... |..+ . .+++|+.|++++|. ...+|..+.. .+
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~~~~L~~L~Ls~N~--l~~lp~~~~~--------~l 456 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFKGINVSSINLSNNQ--ISKFPKELFS--------TG 456 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCCCCCEEEEECCSSC--CCSCCTHHHH--------TT
T ss_pred CcccchhhhhcccCccCEEECcCCcCCCcchhhh--cccccccccCCCCCEEECcCCc--cCcCCHHHHc--------cC
Confidence 776654322 12577777777766543 3322 2 55678888888765 2255544322 34
Q ss_pred CCCcEEEcCCccccccCccccccCC-------CcceEeCCCCcCcccccccccccccCccccc--CCCCCcEEeCccccC
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLK-------NIKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQL 511 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~--~l~~L~~L~Ls~N~l 511 (594)
++|++|++++|.++......+.... +|+.|++++| .+..+|..+. .+++|+.|+|++|+|
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-----------KLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-----------CCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-----------cCCccChhhhhccCCCcCEEECCCCCC
Confidence 5788888888888755544554443 8999999985 4557888887 899999999999999
Q ss_pred ccccccccCCCCCcEEEcc------CCCCc-ccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccC
Q psy6452 512 NCIPEDIGNLICLEKLNIS------HNKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 512 ~~ip~~~~~l~~L~~L~Ls------~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+.+|..+..+++|++|+|+ +|++. .+|.++..+++|++|+|++|+|+.||..+. ++|++|+|++|++..++
T Consensus 526 ~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 9999989999999999995 45555 678889999999999999999999998865 79999999999999888
Q ss_pred HhHHh
Q psy6452 585 ISLLC 589 (594)
Q Consensus 585 ~~~~~ 589 (594)
...++
T Consensus 604 ~~~~~ 608 (636)
T 4eco_A 604 LSYVC 608 (636)
T ss_dssp CTTTH
T ss_pred HHhcc
Confidence 65554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.64 Aligned_cols=414 Identities=19% Similarity=0.214 Sum_probs=261.1
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.++... +++|++|+|++|+++++.+. .+.+++.++ .++++.|.+....
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~--------------~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLK--------------VLNLQHNELSQLS 89 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCC--------------EEECCSSCCCCCC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcC--------------EEECCCCccCccC
Confidence 36778888888888887654 67788888888888776532 222222222 2334444444444
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC----
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---- 302 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---- 302 (594)
+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.+++ +++..+..+++|++|++++|.++.++.
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC---CCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc---cCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 4467777888888888888887777777778888888888887655 344555677888888888888776652
Q ss_pred cCCCcCccEEeccCCccccCchhhhhcc-cc---------------------ccCCCcceEEcCCCCCCCCChhhhccCC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHF-YV---------------------HIPYKHSQSDISHNNFESMPLCLQVHFC 360 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~-~~---------------------~~~~~L~~L~Ls~N~l~~i~~~~~~~l~ 360 (594)
+..+++|++|++++|.++++++..+... .+ ....+|+.|++++|.++++.+..|.+++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 2355778888888887777554322110 00 0114677788888887777666666664
Q ss_pred C--CcEEECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccc
Q psy6452 361 K--LVKLDISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436 (594)
Q Consensus 361 ~--L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~ 436 (594)
. |+.|++++|.++++.+..+ .++|++|++++|.+..++... +..+++|+.|++++|. ..+.++..-........
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFS 324 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCB-CCC------CCEECTTT
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchh-hhcccccccccccChhh
Confidence 4 8888888888877665433 457888888888776665433 4677778888777642 22222111111111123
Q ss_pred ccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc---ccc--------------cccc-ccCcccccCC
Q psy6452 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS---QDF--------------VNVL-WELPLSILYL 498 (594)
Q Consensus 437 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~---~~~--------------~n~~-~~ip~~~~~l 498 (594)
+..+++|++|++++|.+++..+..|..+++|++|++++|...... ..+ .|.+ +..|..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 456788899999999988888888888888888888887432110 000 0222 2335567777
Q ss_pred CCCcEEeCccccCc-ccc-ccccCCCCCcEEEccCCCCccc---------------------------CccccCCCCCCE
Q psy6452 499 SSIQELHLSNVQLN-CIP-EDIGNLICLEKLNISHNKVYKL---------------------------PESFANLKSLKI 549 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~-~ip-~~~~~l~~L~~L~Ls~N~l~~l---------------------------p~~~~~l~~L~~ 549 (594)
++|+.|+|++|.++ .+| ..|.++++|++|++++|+++.+ |..|..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 88888888888876 455 3467777777777777776544 334445555555
Q ss_pred EECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 550 LDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 550 L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|+|++|+|+.+|.. +..+++|++|++++|+++.+
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 55555555554433 55555555555555555544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=368.80 Aligned_cols=408 Identities=15% Similarity=0.189 Sum_probs=236.0
Q ss_pred cCccEEecCCCCCc-ccChhh--hccCcEEEc-cCccccccccccccCC---CCCcc-----------------------
Q psy6452 150 EALSTRTFCDHELQ-SIEDDI--LVQLECLHI-DNNKAQEYIVSMNVDR---TPGFK----------------------- 199 (594)
Q Consensus 150 ~~L~~l~l~~n~l~-~ip~~~--l~~L~~L~L-s~N~i~~~~~~~~~~~---l~~l~----------------------- 199 (594)
-+++.++|++++++ .||+.+ +++|++|+| ++|.+.+..+...... +....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 45779999999994 888777 999999999 9998877632211000 00000
Q ss_pred -----------ccCCCCcc-cccccccccccccccccccccCccCCCcccEEEccCCCCcc------------------c
Q psy6452 200 -----------LQNNDNDQ-NTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINF------------------V 249 (594)
Q Consensus 200 -----------~~~~~~~~-~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------l 249 (594)
........ .......+....|.+.+ +|..+.++++|++|+|++|+|+. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00000000 00000000111134444 55556666666666666666665 4
Q ss_pred chHh-hhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC-CCC--CCC-c-------CCCcCccEEeccCC
Q psy6452 250 QESM-SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK-LSE--LPD-F-------LNFKVLKELDISHN 317 (594)
Q Consensus 250 ~~~~-f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~-l~~--lp~-~-------~~l~~L~~L~Ls~N 317 (594)
|..+ |.++++|++|+|++|.+.+ .+| ..+..+++|++|+|++|+ ++. +|. + ..+++|++|+|++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~--~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMT--QLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCC--SCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCc--cCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 4443 3366666666666666543 244 334566666666666665 553 441 2 23336666666666
Q ss_pred ccccCch--hhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc-cccCC-ccEEeCCCCC
Q psy6452 318 NFESMPL--CLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHT-LQTFSMNHNI 393 (594)
Q Consensus 318 ~l~~lp~--~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~-L~~L~L~~N~ 393 (594)
.++.+|. .+... ++|+.|+|++|.++.+| .|..+++|+.|++++|+++.++.. ...++ |+.|++++|.
T Consensus 559 ~L~~ip~~~~l~~L------~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 559 NLEEFPASASLQKM------VKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCCBCCCHHHHTTC------TTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred cCCccCChhhhhcC------CCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 6666665 33221 45666666666666555 445566666666666666654432 12234 6666666666
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCC----------------------------ccHHHhhhcccccccccCCCcE
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEH----------------------------LPIWLLNHMELKENGVFSNLIS 445 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~----------------------------lp~~~~~~~~~~~~~~~~~L~~ 445 (594)
+..+|..+.....++|+.|++++|. +.+. +|..+. ..+++|+.
T Consensus 631 L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--------~~l~~L~~ 701 (876)
T 4ecn_A 631 LKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--------ATGSPIST 701 (876)
T ss_dssp CCSCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--------HTTCCCSE
T ss_pred CCcCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--------ccCCCCCE
Confidence 6566554422222335666665543 3333 332221 12345666
Q ss_pred EEcCCccccccCccccccC-------CCcceEeCCCCcCcccccccccccccCccccc--CCCCCcEEeCccccCccccc
Q psy6452 446 LHMQNTAAVMSNVSQLKYL-------KNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPE 516 (594)
Q Consensus 446 L~l~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~--~l~~L~~L~Ls~N~l~~ip~ 516 (594)
|++++|.++......+... ++|+.|++++| .+..+|..+. .+++|+.|+|++|+|+.+|.
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-----------~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-----------KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-----------CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCC-----------CCccchHHhhhccCCCcCEEEeCCCCCCccch
Confidence 6666666653333333222 25666666663 3446777776 77888888888888888877
Q ss_pred cccCCCCCcEEEccC------CCCc-ccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 517 DIGNLICLEKLNISH------NKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 517 ~~~~l~~L~~L~Ls~------N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
.+..+++|+.|+|++ |++. .+|.+|..+++|+.|+|++|+|+.||..+. ++|+.|+|++|++..++...|+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 777888888888866 5554 567778888888888888888888877754 5888888888888887777766
Q ss_pred hh
Q psy6452 590 YL 591 (594)
Q Consensus 590 ~l 591 (594)
..
T Consensus 849 ~~ 850 (876)
T 4ecn_A 849 PY 850 (876)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=357.35 Aligned_cols=405 Identities=16% Similarity=0.128 Sum_probs=251.3
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
..++.+++++|.++.++... +++|++|+|++|+++++.+. .+.+++.++ .++++.|.+....
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~--------------~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLS--------------NLILTGNPIQSFS 96 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCC--------------EEECTTCCCCCCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcC--------------EeECCCCcccccC
Confidence 35667777777777777644 56777777777777766522 223333332 3444455555555
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFL 304 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~ 304 (594)
+..|.++++|++|+|++|+++.+++..|+++++|++|++++|.++++ .+| ..++.+++|++|++++|+++.++ .|.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCC-GGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce-ech-HhHhhcCCCCEEEccCCcceecChhhhh
Confidence 66677777777777777777777766667777777777777776542 133 34467777777777777777544 344
Q ss_pred CCcCcc----EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCC-------------------------------
Q psy6452 305 NFKVLK----ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE------------------------------- 349 (594)
Q Consensus 305 ~l~~L~----~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~------------------------------- 349 (594)
.+.+|+ +|++++|.++.++...+.. .+|+.|++++|.+.
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 444443 6777777777666544321 14555555555432
Q ss_pred ---------------------------CCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhh
Q psy6452 350 ---------------------------SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402 (594)
Q Consensus 350 ---------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~ 402 (594)
+..+. |..+++|+.|++++|.++.++.....++|+.|++++|.++.+|..
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-- 325 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-- 325 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC--
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC--
Confidence 00011 334455555555555555554333334566666666655555521
Q ss_pred hcccCcccEEECcCCCCccCCccHHH-------------hhhc--ccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 403 YQEFLCLKELNMSSTDPFFEHLPIWL-------------LNHM--ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 403 ~~~~~~L~~L~Ls~n~~~~~~lp~~~-------------~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.+++|+.|++++|.. .+.++... .... ....+..+++|++|++++|.+++.. ..+..+++|
T Consensus 326 --~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L 401 (606)
T 3vq2_A 326 --DLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEEL 401 (606)
T ss_dssp --CCSSCCEEEEESCSS-CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTC
T ss_pred --CCCccceeeccCCcC-ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCC
Confidence 445555555554421 11100000 0000 0011123445555555555554432 445555555
Q ss_pred ceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcc-ccccccCCCCCcEEEccCCCCcc--cCccccC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVYK--LPESFAN 543 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~ 543 (594)
+.|++++| ...+..| ..+..+++|++|++++|.++. +|..+..+++|++|+|++|+++. +|..|..
T Consensus 402 ~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 402 QHLDFQHS----------TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CEEECTTS----------EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CeeECCCC----------ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 56665554 3333344 467788999999999999985 56668999999999999999985 6778999
Q ss_pred CCCCCEEECcCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 544 LKSLKILDVSYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
+++|++|+|++|+++.+ |..+..+++|++|++++|+++.+++..|..+.+|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 99999999999999966 5568999999999999999999988888877654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=341.86 Aligned_cols=374 Identities=18% Similarity=0.199 Sum_probs=278.2
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+.++++++.+|. ..++|++|+|++|+++++. +..|.++
T Consensus 14 ~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~---------------------------------------~~~~~~l 53 (455)
T 3v47_A 14 NAICINRGLHQVPE-LPAHVNYVDLSLNSIAELN---------------------------------------ETSFSRL 53 (455)
T ss_dssp EEECCSSCCSSCCC-CCTTCCEEECCSSCCCEEC---------------------------------------TTTTSSC
T ss_pred ccCcCCCCcccCCC-CCCccCEEEecCCccCcCC---------------------------------------hhHhccC
Confidence 45566778888887 6678999999999888764 2233456
Q ss_pred CcccEEEccCCCCc-ccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCC--CCC--cCCCcC
Q psy6452 234 HDIFTVNLSHQDIN-FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE--LPD--FLNFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~--~~~l~~ 308 (594)
++|++|+|++|.+. .+++..|.++++|++|+|++|++++ +.+..|+.+++|++|+|++|.+++ ++. |..+++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 78888888888876 6667777888888888888888544 445666788888888888888875 223 777888
Q ss_pred ccEEeccCCccccC-chhhhhccccccCCCcceEEcCCCCCCCCChhhhccC--CCCcEEECCCCCCCCCCCccc-----
Q psy6452 309 LKELDISHNNFESM-PLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF--CKLVKLDISHNQIKILHKPRC----- 380 (594)
Q Consensus 309 L~~L~Ls~N~l~~l-p~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~----- 380 (594)
|++|++++|.++++ |..++ ...++|++|++++|.++.+....+..+ .+|+.|++++|.+..++....
T Consensus 131 L~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGG-----GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CCEEECCCCccCccCccccc-----CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 88888888888875 43322 122678888888888887776666555 678888888888877664432
Q ss_pred -----cCCccEEeCCCCCCCCCCchhhh--cccCcccEEECcCCCCccCCccHHHhhhccccccc--ccCCCcEEEcCCc
Q psy6452 381 -----THTLQTFSMNHNIGMKIPEWFWY--QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENG--VFSNLISLHMQNT 451 (594)
Q Consensus 381 -----~~~L~~L~L~~N~~~~ip~~~~~--~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~--~~~~L~~L~l~~n 451 (594)
.++|+.|++++|.+......... ....+|+.|++++|......+............+. ..++|+.|++++|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 25788888888866543322211 12378888888886422211111000000001111 2368999999999
Q ss_pred cccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEcc
Q psy6452 452 AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNIS 530 (594)
Q Consensus 452 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls 530 (594)
.+++..+..+..+++|++|++++| ...+..|..+..+++|++|+|++|.|+.+ |..|..+++|++|+|+
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQN----------EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred cccccchhhcccCCCCCEEECCCC----------cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 999999999999999999999997 44445567888999999999999999977 4568999999999999
Q ss_pred CCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 531 HNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 531 ~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+|+++.+ |.+|..+++|++|+|++|+|+.+|.. +..+++|++|++++|+++.-.+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999987 66899999999999999999998776 7899999999999999997554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=361.86 Aligned_cols=346 Identities=17% Similarity=0.166 Sum_probs=285.9
Q ss_pred ccccccccccCccCCCcccEEEccCCCCcc------------------cchHhhh--cCCCCCEEECCCCCCCCccccch
Q psy6452 219 MELIDTELNCCNKQYHDIFTVNLSHQDINF------------------VQESMSQ--KLTNLTVLDLSHNNHQDINFVQE 278 (594)
Q Consensus 219 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------l~~~~f~--~l~~L~~L~Ls~N~l~~i~~l~~ 278 (594)
.|.+++ +|..+.++++|++|+|++|+++. +|.. +. ++++|++|+|++|.+.+ .+|
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~--~~p- 266 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT--KLP- 266 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS--SCC-
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc--cCh-
Confidence 356667 88889999999999999999998 6655 46 89999999999999866 466
Q ss_pred hhhhcCCCCCEEEcCCCC-CCC--CC-CcCCC------cCccEEeccCCccccCch--hhhhccccccCCCcceEEcCCC
Q psy6452 279 SMSQKLTNLIVLDLSHNK-LSE--LP-DFLNF------KVLKELDISHNNFESMPL--CLQVHFYVHIPYKHSQSDISHN 346 (594)
Q Consensus 279 ~~~~~l~~L~~L~Ls~N~-l~~--lp-~~~~l------~~L~~L~Ls~N~l~~lp~--~~~~~~~~~~~~~L~~L~Ls~N 346 (594)
..+..+++|++|++++|+ +++ +| .+..+ ++|++|++++|+++.+|. .+... ++|+.|++++|
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l------~~L~~L~L~~N 340 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM------KKLGMLECLYN 340 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC------TTCCEEECCSC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC------CCCCEEeCcCC
Confidence 455799999999999998 885 77 35554 999999999999999997 55432 68999999999
Q ss_pred CCC-CCChhhhccCCCCcEEECCCCCCCCCCCc-cccCC-ccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCC
Q psy6452 347 NFE-SMPLCLQVHFCKLVKLDISHNQIKILHKP-RCTHT-LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH 423 (594)
Q Consensus 347 ~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~-L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~ 423 (594)
.++ .+| .|..+++|++|++++|+++.++.. ...++ |+.|++++|.+..+|..+....+++|+.|++++|. +.+.
T Consensus 341 ~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~ 417 (636)
T 4eco_A 341 QLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSV 417 (636)
T ss_dssp CCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTT
T ss_pred cCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCc
Confidence 999 888 677999999999999999977654 23456 99999999999999987644445699999999975 6666
Q ss_pred ccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccC------
Q psy6452 424 LPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY------ 497 (594)
Q Consensus 424 lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~------ 497 (594)
+|..+.... ...-.+.+|++|++++|.++......+..+++|++|++++| .+..+|..+..
T Consensus 418 ~p~~l~~~~--~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-----------~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 418 DGKNFDPLD--PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-----------MLTEIPKNSLKDENENF 484 (636)
T ss_dssp TTCSSCTTC--SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-----------CCSBCCSSSSEETTEEC
T ss_pred chhhhcccc--cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-----------CCCCcCHHHhccccccc
Confidence 664332100 00014568999999999999777777788999999999996 33456654432
Q ss_pred --CCCCcEEeCccccCcccccccc--CCCCCcEEEccCCCCcccCccccCCCCCCEEECc------CCCCC-ccCccccc
Q psy6452 498 --LSSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPESFANLKSLKILDVS------YNKLT-MLPDGFVM 566 (594)
Q Consensus 498 --l~~L~~L~Ls~N~l~~ip~~~~--~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls------~N~l~-~ip~~l~~ 566 (594)
+++|++|+|++|+|+.+|..+. .+++|++|+|++|+|+.+|..+..+++|++|+|+ +|++. .+|..+..
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 3499999999999999999886 9999999999999999999999999999999995 56666 78999999
Q ss_pred CCCCcEEEccCCCCcccCHhHHhhh
Q psy6452 567 LSNLTTFYAQRKYWMFLTISLLCYL 591 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~~~~~~~l 591 (594)
+++|++|+|++|+++.+|..++..|
T Consensus 565 l~~L~~L~Ls~N~l~~ip~~~~~~L 589 (636)
T 4eco_A 565 CPSLTQLQIGSNDIRKVNEKITPNI 589 (636)
T ss_dssp CSSCCEEECCSSCCCBCCSCCCTTC
T ss_pred CCCCCEEECCCCcCCccCHhHhCcC
Confidence 9999999999999999998766444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=350.00 Aligned_cols=400 Identities=18% Similarity=0.193 Sum_probs=260.5
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
.++.+++++|.++.++... +++|++|+|++|+++++++ ..+.+++.++ .++++.|.+....+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~--------------~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLS--------------TLILTGNPIQSLAL 93 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCC--------------EEECTTCCCCEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCC--------------EEeCcCCcCCccCH
Confidence 5778999999998888654 7789999999999988763 3333444433 34445555666666
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
..|.++++|++|++++|+++.++...|.++++|++|++++|.++++. +| ..++.+++|++|++++|.++.++ .+..
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CC-GGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceec-Ch-hhhcccCCCCEEeCcCCccceecHHHccc
Confidence 77888889999999999888888766888889999999998876532 34 34578889999999999888664 4667
Q ss_pred CcCc----cEEeccCCccccCchhhhhcc---------------------------------------------------
Q psy6452 306 FKVL----KELDISHNNFESMPLCLQVHF--------------------------------------------------- 330 (594)
Q Consensus 306 l~~L----~~L~Ls~N~l~~lp~~~~~~~--------------------------------------------------- 330 (594)
+++| ++|++++|.++.+++..+...
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 7777 788999998887654332110
Q ss_pred -------------------------ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCcc
Q psy6452 331 -------------------------YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ 385 (594)
Q Consensus 331 -------------------------~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~ 385 (594)
.....++|+.|++++|.++.++.... .+ +|+.|++++|.++.++.. ..++|+
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-~~-~L~~L~l~~n~~~~l~~~-~l~~L~ 328 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NF-GWQHLELVNCKFGQFPTL-KLKSLK 328 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS-CC-CCSEEEEESCBCSSCCBC-BCSSCC
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc-cC-CccEEeeccCcccccCcc-cccccC
Confidence 00112456666666666666665543 44 677777777766655442 233444
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCC--ccHHHhhhccc--------------ccccccCCCcEEEcC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH--LPIWLLNHMEL--------------KENGVFSNLISLHMQ 449 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~--lp~~~~~~~~~--------------~~~~~~~~L~~L~l~ 449 (594)
.|++++|.+...... ..+++|+.|++++|. +.+. .|..+.....+ ..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp EEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred EEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence 444444433222211 345555555555543 1111 12222111000 013345566666666
Q ss_pred CccccccCc-cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--cccccccCCCCCcE
Q psy6452 450 NTAAVMSNV-SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN--CIPEDIGNLICLEK 526 (594)
Q Consensus 450 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~ 526 (594)
+|.+.+..+ ..+..+++|++|++++| ...+..|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHT----------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTS----------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCccccccchhhhhcCCCCCEEeCcCC----------cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 666655544 34566666666666665 334445666777788888888888776 57777788888888
Q ss_pred EEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccC
Q psy6452 527 LNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 527 L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|+|++|+++.+ |.+|..+++|++|++++|+++.+|.. +..+++|++|++++|+++.-.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 88888888866 55777788888888888888866544 777888888888888877543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=343.52 Aligned_cols=385 Identities=19% Similarity=0.205 Sum_probs=244.1
Q ss_pred chhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccc----------cc
Q psy6452 144 ENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN----------TK 210 (594)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~----------~~ 210 (594)
.......+|+.+++++|+++.+++.. +++|++|+|++|+++++++ ..+.+++.++...+..... ..
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccccccCCCccccccc
Confidence 34455668889999999999988765 6789999999999988763 2333444443332222111 11
Q ss_pred cccccccccccccc-ccccCccCCCcccEEEccCCCCcccchHhhhcCCCC----CEEECCCCCCCCccccchhhhhcCC
Q psy6452 211 VTNAMDIAMELIDT-ELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNL----TVLDLSHNNHQDINFVQESMSQKLT 285 (594)
Q Consensus 211 ~~~~~~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L----~~L~Ls~N~l~~i~~l~~~~~~~l~ 285 (594)
-...++++.|.+.. .++..+.++++|++|++++|+++.+++..|..+++| ++|++++|.+++ +++..|...
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~---~~~~~~~~~- 200 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEI- 200 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE---ECTTTTTTC-
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee---cCHHHhccC-
Confidence 23334444444443 345555556666666666666665555555555555 566666665433 222222211
Q ss_pred CCCEEEcCCCCC----------------------------------------------------------C-CCC-CcCC
Q psy6452 286 NLIVLDLSHNKL----------------------------------------------------------S-ELP-DFLN 305 (594)
Q Consensus 286 ~L~~L~Ls~N~l----------------------------------------------------------~-~lp-~~~~ 305 (594)
+|+.|++++|.. . .++ .|..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 233333332210 0 000 1233
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhh-------------------ccCCCCcEEE
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ-------------------VHFCKLVKLD 366 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~-------------------~~l~~L~~L~ 366 (594)
+++|++|++++|.++.+|..+. . . +|++|++++|.+..++...+ ..+++|++|+
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~-----~-~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSY-----N-F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCS-----C-C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred cCcccEEEecCccchhhhhhhc-----c-C-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 4555556666665555554321 1 1 45555555555554443211 3556666666
Q ss_pred CCCCCCCCCC--Cc--cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCC
Q psy6452 367 ISHNQIKILH--KP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442 (594)
Q Consensus 367 Ls~N~l~~l~--~~--~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~ 442 (594)
+++|.++.+. +. ...++|+.|++++|.+..++.. +..+++|+.|++++|. +.+..| ...+..+++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--------~~~~~~l~~ 422 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSE--------FSVFLSLRN 422 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTT--------SCTTTTCTT
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccc--------hhhhhcCCC
Confidence 6666665542 11 2234666666666666666554 3566677777777653 222111 123456789
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccccccc-ccCcccccCCCCCcEEeCccccCccc-cccccC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLNCI-PEDIGN 520 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~-~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~ 520 (594)
|++|++++|.+.+..+..+..+++|++|++++| ... +.+|..+..+++|++|+|++|+++.+ |..|..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCC----------cCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 999999999999999999999999999999997 333 46888999999999999999999977 677999
Q ss_pred CCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCC-ccC
Q psy6452 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT-MLP 561 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~-~ip 561 (594)
+++|++|+|++|+++.++. .|..+++|+.|++++|+++ .+|
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999999998865 7899999999999999999 444
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=356.78 Aligned_cols=383 Identities=16% Similarity=0.152 Sum_probs=305.9
Q ss_pred CCCcccChhh--hccCcEEEccCccccc------------------cccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 160 HELQSIEDDI--LVQLECLHIDNNKAQE------------------YIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 160 n~l~~ip~~~--l~~L~~L~Ls~N~i~~------------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
|+++.||..+ +++|++|+|++|+|++ ++....+..++. +..++++.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~--------------L~~L~Ls~ 500 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD--------------LTDVELYN 500 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT--------------CCEEEEES
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC--------------CCEEECcC
Confidence 5566688877 8999999999999998 442222223333 33556677
Q ss_pred cccccccccCccCCCcccEEEccCCC-Ccc--cchHh------hhcCCCCCEEECCCCCCCCccccch-hhhhcCCCCCE
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQD-INF--VQESM------SQKLTNLTVLDLSHNNHQDINFVQE-SMSQKLTNLIV 289 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~------f~~l~~L~~L~Ls~N~l~~i~~l~~-~~~~~l~~L~~ 289 (594)
|.+.+.+|..+.++++|+.|+|++|+ ++. +|..+ +..+++|++|+|++|.++. +|. ..+..+++|++
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGL 577 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCE
Confidence 77888889999999999999999998 886 55432 2244599999999999764 665 36689999999
Q ss_pred EEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCC-cceEEcCCCCCCCCChhhhccCC--CCcEEE
Q psy6452 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYK-HSQSDISHNNFESMPLCLQVHFC--KLVKLD 366 (594)
Q Consensus 290 L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~-L~~L~Ls~N~l~~i~~~~~~~l~--~L~~L~ 366 (594)
|+|++|.++.+|.|..+++|++|+|++|.++.+|..+... ++ |+.|++++|.++.+|.. +..++ +|+.|+
T Consensus 578 L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l------~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF------TDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVD 650 (876)
T ss_dssp EECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEE------CTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEE
T ss_pred EECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhc------cccCCEEECcCCCCCcCchh-hhccccCCCCEEE
Confidence 9999999999999999999999999999999999765432 45 99999999999998854 33444 499999
Q ss_pred CCCCCCCCCCCcc-------ccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccc
Q psy6452 367 ISHNQIKILHKPR-------CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439 (594)
Q Consensus 367 Ls~N~l~~l~~~~-------~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~ 439 (594)
+++|++++..+.. ...+|+.|++++|.+..+|..+ +..+++|+.|++++|. ...+|..+..... .....
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~-~~~l~~L~~L~Ls~N~--L~~ip~~~~~~~~-~~l~n 726 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNL--MTSIPENSLKPKD-GNYKN 726 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH-HHTTCCCSEEECCSCC--CSCCCTTSSSCTT-SCCTT
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH-HccCCCCCEEECCCCc--CCccChHHhcccc-ccccc
Confidence 9999998753321 1248999999999999999887 5689999999999985 3377764432211 01233
Q ss_pred cCCCcEEEcCCccccccCccccc--cCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcc------ccC
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLK--YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN------VQL 511 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~------N~l 511 (594)
+++|+.|++++|.++ ..+..+. .+++|+.|++++| .+..+|..+..+++|+.|+|++ |++
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-----------~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-----------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-----------CCSSCCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-----------CCCccchhhhcCCCCCEEECCCCCCcccccc
Confidence 458999999999999 4566665 8999999999996 4445899999999999999987 665
Q ss_pred c-cccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC-cccccCCCCcEEEccCCCCcccC
Q psy6452 512 N-CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 512 ~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
. .+|..+..+++|+.|+|++|+|+.||..+. ++|+.|+|++|+|..+. ..+.....+..+.|.+|++..|.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~ 867 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEE
T ss_pred cccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccC
Confidence 5 788899999999999999999999998765 69999999999999764 34666667788888888887664
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=342.22 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=101.7
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++|+++.||..+.++|++|+|++|+++++++. .+.+++.++ .++++.|.+....+..|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~--------------~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS-DILSLSKLR--------------ILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHH-HHTTCTTCC--------------EEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChh-hcccccccc--------------EEecCCCccCCcChHHhhc
Confidence 3678888888888887788888888888888876532 222333322 2334444555555666777
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCc--c
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL--K 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L--~ 310 (594)
+++|++|+|++|+|+.++.. .+++|++|+|++|.++++. +| ..|+.+++|++|++++|.++. ..+..+++| +
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-~p-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~ 141 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-IC-KEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNIS 141 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-CC-GGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEE
T ss_pred ccCCCEEecCCCceeecCcc---ccCCccEEeccCCcccccc-ch-hhhccCCcceEEEecCcccch-hhccccccceee
Confidence 78888888888888877764 6788888888888866531 22 445778888888888888775 345666666 8
Q ss_pred EEeccCCcc
Q psy6452 311 ELDISHNNF 319 (594)
Q Consensus 311 ~L~Ls~N~l 319 (594)
+|++++|.+
T Consensus 142 ~L~l~~n~l 150 (520)
T 2z7x_B 142 KVLLVLGET 150 (520)
T ss_dssp EEEEEECTT
T ss_pred EEEeecccc
Confidence 888888877
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=342.87 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=141.5
Q ss_pred cCCccEEeCCCCCCCCCCc-hhhhcccCcccEEECcCCCCccCCccHHHh----------------hhcccccccccCCC
Q psy6452 381 THTLQTFSMNHNIGMKIPE-WFWYQEFLCLKELNMSSTDPFFEHLPIWLL----------------NHMELKENGVFSNL 443 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~-~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~----------------~~~~~~~~~~~~~L 443 (594)
.++|+.+++++|.+..... ...+..+.+|+.++++.+.. ..++..+. .......+..+.++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE--EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccc--ccccccccccccccchhhhhcccccccccccccccccc
Confidence 4567777777775543211 11123455666666665431 01111000 11112234567788
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCcccc-ccccCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCIP-EDIGNL 521 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l 521 (594)
+.++++.|.+.+..+..+..+++|+.|++++| +... ..|..+..+++|++|+|++|+|+.++ ..|.++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N----------~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccchhhhhhhhhhc----------ccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 99999999999999999999999999999987 4333 45778889999999999999999774 569999
Q ss_pred CCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccC-cccccC-CCCcEEEccCCCCcc
Q psy6452 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLP-DGFVML-SNLTTFYAQRKYWMF 582 (594)
Q Consensus 522 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip-~~l~~l-~~L~~L~L~~N~l~~ 582 (594)
++|++|+|++|+|+.++. .|..+++|++|+|++|+|+.++ ..+..+ ++|++|+|++|+|+.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999855 7999999999999999999774 458887 689999999999985
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=323.78 Aligned_cols=349 Identities=21% Similarity=0.264 Sum_probs=292.9
Q ss_pred ccCccEEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccc
Q psy6452 149 TEALSTRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227 (594)
Q Consensus 149 ~~~L~~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~ 227 (594)
..+++.+++.++.++.+|... +++|++|+|++|.++++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------------------- 85 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--------------------------------------- 85 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------------------
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh---------------------------------------
Confidence 346789999999999998644 8899999999999987651
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK 307 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~ 307 (594)
+.++++|++|++++|+++.+++ +..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.+..++
T Consensus 86 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 86 --LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI---DP--LKNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred --hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC---hH--HcCCCCCCEEECCCCccCCChhhccCC
Confidence 2457889999999999999887 78999999999999997764 33 678999999999999999998899999
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
+|++|+++ |.+..++. + ...++|+.|++++|.++.++. +..+++|++|++++|.++++.+....++|+.|
T Consensus 157 ~L~~L~l~-~~~~~~~~-~------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 226 (466)
T 1o6v_A 157 SLQQLSFG-NQVTDLKP-L------ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDEL 226 (466)
T ss_dssp TCSEEEEE-ESCCCCGG-G------TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred cccEeecC-CcccCchh-h------ccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCcccccccccccCCCCEE
Confidence 99999996 56665543 2 233689999999999998864 56899999999999999988777777899999
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
++++|.+..++. +..+++|+.|++++|. +.+. + .+..+++|+.|++++|.+++..+ +..+++|
T Consensus 227 ~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~-~----------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 227 SLNGNQLKDIGT---LASLTNLTDLDLANNQ-ISNL-A----------PLSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp ECCSSCCCCCGG---GGGCTTCSEEECCSSC-CCCC-G----------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ECCCCCcccchh---hhcCCCCCEEECCCCc-cccc-h----------hhhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 999998888764 4689999999999975 2222 2 14567899999999999988755 8889999
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 547 (594)
+.|++++| .+..++. +..+++|+.|+|++|+++.++. +..+++|+.|++++|+++.++ .+..+++|
T Consensus 290 ~~L~L~~n-----------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L 355 (466)
T 1o6v_A 290 TNLELNEN-----------QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNI 355 (466)
T ss_dssp SEEECCSS-----------CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred CeEEcCCC-----------cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCC
Confidence 99999996 3344443 7788999999999999998765 788999999999999999884 68899999
Q ss_pred CEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhH
Q psy6452 548 KILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISL 587 (594)
Q Consensus 548 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~ 587 (594)
+.|++++|+++.++. +..+++|+.|++++|+++.+|...
T Consensus 356 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred CEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 999999999997755 889999999999999999877654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=338.00 Aligned_cols=383 Identities=18% Similarity=0.205 Sum_probs=204.7
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++|+++.||...+++|++|+|++|+|+++++ ..+.+++.++ .++++.|.+....+..|.++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~--------------~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRM-PDISFLSELR--------------VLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCG-GGTTTCTTCC--------------EEECCSCCCCEECTTTTTTC
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCCccccCh-hhhccCCCcc--------------EEECCCCCCCcCCHHHhCCC
Confidence 66777777777777667777777777777776652 2222333322 23333444444445666777
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCc--cE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL--KE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L--~~ 311 (594)
++|++|+|++|+|+.++.. .+++|++|+|++|+++++. + +..|+.+++|++|++++|.++.. .+..+++| ++
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~-~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLP-V-CKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSC 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCC-C-CGGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEE
T ss_pred CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccC-c-hHhhcccCcccEEecCCCccccC-chhhhhhceeeE
Confidence 8888888888888888764 7888888888888865531 1 24567888888888888888753 45555555 88
Q ss_pred EeccCCcc--cc-Cchhhhhcc--------------------ccccCCCcceEEcCCCCCC--CCCh--hhhcc------
Q psy6452 312 LDISHNNF--ES-MPLCLQVHF--------------------YVHIPYKHSQSDISHNNFE--SMPL--CLQVH------ 358 (594)
Q Consensus 312 L~Ls~N~l--~~-lp~~~~~~~--------------------~~~~~~~L~~L~Ls~N~l~--~i~~--~~~~~------ 358 (594)
|++++|.+ ++ .|..+.... ......+|+.+++++|... .++. ..+.+
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 88888887 54 232222100 0000112333333333200 0000 00001
Q ss_pred ---------------------CCCCcEEECCCCCCCC-CCCccc--------------------------------cCCc
Q psy6452 359 ---------------------FCKLVKLDISHNQIKI-LHKPRC--------------------------------THTL 384 (594)
Q Consensus 359 ---------------------l~~L~~L~Ls~N~l~~-l~~~~~--------------------------------~~~L 384 (594)
.++|++|++++|.+++ ++...+ ..+|
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 1133444444444331 111110 0124
Q ss_pred cEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC--ccccc
Q psy6452 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN--VSQLK 462 (594)
Q Consensus 385 ~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~ 462 (594)
+.|++++|.+..++. ...+++|+.|++++|. +.+.+|. .+..+++|+.|++++|.+++.. +..+.
T Consensus 334 ~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 334 KMLSISDTPFIHMVC---PPSPSSFTFLNFTQNV-FTDSVFQ---------GCSTLKRLQTLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp SEEEEESSCCCCCCC---CSSCCCCCEEECCSSC-CCTTTTT---------TCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred eEEEccCCCcccccC---ccCCCCceEEECCCCc-cccchhh---------hhcccCCCCEEECCCCCcCCcccchhhhc
Confidence 444444443322221 1344555555555543 2222222 1233455555666655555432 33455
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCccc-ccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+++|++|++++| ...+.+|.. +..+++|++|++++|+|+ .+|..+. ++|++|+|++|+|+.||..
T Consensus 401 ~l~~L~~L~l~~N----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~ 468 (562)
T 3a79_B 401 NMSSLETLDVSLN----------SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD 468 (562)
T ss_dssp TCTTCCEEECTTS----------CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCC----------cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChh
Confidence 5555666666554 222224432 445566666666666664 3333222 5666666666666666665
Q ss_pred ccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+..+++|++|+|++|+|+.+|.. +..+++|++|++++|+|+.
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 55666666666666666666665 6666666666666666653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=352.68 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=105.1
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc-ccCccC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL-NCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~-~~~~~~ 232 (594)
..+.++++++.||. .+++|++|||++|+|+++.+ ..+..++.++. ++++.+.....+ +..|.+
T Consensus 8 ~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~--------------LdLs~n~~~~~i~~~~f~~ 71 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQL--------------LELGSQYTPLTIDKEAFRN 71 (844)
T ss_dssp EEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSE--------------EEECTTCCCCEECTTTTSS
T ss_pred EEEccCCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeE--------------EeCCCCCCccccCHHHhcC
Confidence 45566777888887 67778888888888877652 33344444332 333334333333 566777
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC---CcCCCcCc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP---DFLNFKVL 309 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~l~~L 309 (594)
+++|++|+|++|.|+.+.+..|.++++|++|+|++|.+++. .++...++.+++|++|+|++|.+++++ .|.++++|
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC-CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc-cccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 88888888888888888777788888888888888886652 122334677888888888888887653 37788888
Q ss_pred cEEeccCCccccC
Q psy6452 310 KELDISHNNFESM 322 (594)
Q Consensus 310 ~~L~Ls~N~l~~l 322 (594)
++|++++|.++++
T Consensus 151 ~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 151 KSIDFSSNQIFLV 163 (844)
T ss_dssp CEEEEESSCCCCC
T ss_pred CEEECCCCcCCee
Confidence 8888888888764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=352.38 Aligned_cols=443 Identities=16% Similarity=0.126 Sum_probs=236.1
Q ss_pred eceeeeeeecccccccccccccccceeeeceecc-cccccchhhhccCccEEecCCC-CCcccChhh---hccCcEEEcc
Q psy6452 105 YGRMICTIMKFGKEITTVLEEDTNSGTQDTITNN-SVEMDENTVKTEALSTRTFCDH-ELQSIEDDI---LVQLECLHID 179 (594)
Q Consensus 105 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~n~-~~~~~~~~~~~~~L~~l~l~~n-~l~~ip~~~---l~~L~~L~Ls 179 (594)
.|+++.|....-..++. +. .....++...|. ....+.......+|+.+++++| .+..|++.. +++|++|+|+
T Consensus 5 ~~~~~dcs~~~L~~vP~-lp--~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ-VL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TTEEEEESCCCSSCCCS-SC--TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eceEEEccCCCCCCCCC-CC--CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45566665444444333 11 112233333343 3333445556678889999888 557775544 7789999999
Q ss_pred CccccccccccccCCCCCccccCCCCcccccccccccccccccccccccC--ccCCCcccEEEccCCCCcccch-Hhhhc
Q psy6452 180 NNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC--NKQYHDIFTVNLSHQDINFVQE-SMSQK 256 (594)
Q Consensus 180 ~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-~~f~~ 256 (594)
+|+++++.+. .+.+++.++ .++++.|.+....+.. +..+++|++|+|++|.++.+.. ..|++
T Consensus 82 ~N~l~~~~p~-~~~~l~~L~--------------~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 82 SSKIYFLHPD-AFQGLFHLF--------------ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TCCCCEECTT-SSCSCSSCC--------------CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred CCcCcccCHh-HccCCcccC--------------EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 9999887532 333333333 3344445555433333 6778888888888888877653 46788
Q ss_pred CCCCCEEECCCCCCCCccccchhhhhcC--CCCCEEEcCCCCCCC-CC-CcCCCcC------ccEEeccCCcccc-Cchh
Q psy6452 257 LTNLTVLDLSHNNHQDINFVQESMSQKL--TNLIVLDLSHNKLSE-LP-DFLNFKV------LKELDISHNNFES-MPLC 325 (594)
Q Consensus 257 l~~L~~L~Ls~N~l~~i~~l~~~~~~~l--~~L~~L~Ls~N~l~~-lp-~~~~l~~------L~~L~Ls~N~l~~-lp~~ 325 (594)
+++|++|+|++|.++++ .+..+..+ ++|+.|++++|.+.. .| .+..+++ |++|++++|.++. ++..
T Consensus 147 L~~L~~L~Ls~N~i~~~---~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLV---CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp CSSCCEEEEESSCCCCC---CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred CCCCCEEECCCCcCCee---CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH
Confidence 88888888888886653 23334444 677777777777663 22 2333333 7777777776553 2222
Q ss_pred hhhcc--------------------------------ccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 326 LQVHF--------------------------------YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 326 ~~~~~--------------------------------~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
+.... ....+.+|+.|++++|.+..++...|..+++|+.|++++|.++
T Consensus 224 ~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred HHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC
Confidence 21100 0001245666666666666655555556666666666666666
Q ss_pred CCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCc
Q psy6452 374 ILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNT 451 (594)
Q Consensus 374 ~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n 451 (594)
++.+..+ .++|+.|++++|.+..++... +..+++|+.|++++|+ + ..++. ..+..+++|+.|++++|
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~-i-~~~~~--------~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNH-I-AIIQD--------QTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCC-C-CCCCS--------SCSCSCCCCCEEEEETC
T ss_pred CCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCC-C-CccCh--------hhhcCCCCCCEEECCCC
Confidence 5544332 345666666666555553322 3455666666666553 1 11111 11122333333333333
Q ss_pred ccc---------------------------------------ccC-ccccccCCCcceEeCCCCcCcccccccccccccC
Q psy6452 452 AAV---------------------------------------MSN-VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491 (594)
Q Consensus 452 ~l~---------------------------------------~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~i 491 (594)
.++ +.. ...+..+++|+.|++++|.+.....
T Consensus 373 ~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------- 443 (844)
T 3j0a_A 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG--------- 443 (844)
T ss_dssp CSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS---------
T ss_pred CCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc---------
Confidence 332 211 1123355666666666653321110
Q ss_pred cccccCCCCCcEEeCccccCccc------cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCccc
Q psy6452 492 PLSILYLSSIQELHLSNVQLNCI------PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDGF 564 (594)
Q Consensus 492 p~~~~~l~~L~~L~Ls~N~l~~i------p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~l 564 (594)
+..+..+++|+.|+|++|.++.+ +..|..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+|+.+|...
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 01122344555555555555422 1235555666666666666665533 4556666666666666666554442
Q ss_pred ccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 565 VMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 565 ~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
.. ++|+.|+|++|+++.+++..|.
T Consensus 524 ~~-~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 524 LP-ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CC-SCCCEEEEEEECCCCCCSCCCS
T ss_pred hh-ccccEEECCCCcCCCCChhHhC
Confidence 22 5566666666666665555443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=333.41 Aligned_cols=350 Identities=19% Similarity=0.178 Sum_probs=245.3
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC--C-Cc
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL--P-DF 303 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l--p-~~ 303 (594)
+..|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|++++ +++..|+.+++|++|+|++|.++.+ | .+
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC---CChhhhhcCcccCeeccccCccccCCCchhh
Confidence 4556778999999999999999999999999999999999999665 5677788999999999999999854 4 36
Q ss_pred CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCC------------
Q psy6452 304 LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ------------ 371 (594)
Q Consensus 304 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~------------ 371 (594)
..+++|++|++++|++++++......+ .........++++.|.++.++...+. ...++.+++++|.
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred ccchhhhhhcccCccccccccccccch-hhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcC
Confidence 788999999999999998754433221 12334456788888888766554432 2223333333332
Q ss_pred ----------------------------------------------------------------------CCCCCCcccc
Q psy6452 372 ----------------------------------------------------------------------IKILHKPRCT 381 (594)
Q Consensus 372 ----------------------------------------------------------------------l~~l~~~~~~ 381 (594)
+..+....+.
T Consensus 248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 327 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 327 (635)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC
T ss_pred Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccc
Confidence 1111111222
Q ss_pred CCccEEeCCCCCCCCCCchh------------------hhcccCcccEEECcCCCCc-cCCccHHHhhhccc--------
Q psy6452 382 HTLQTFSMNHNIGMKIPEWF------------------WYQEFLCLKELNMSSTDPF-FEHLPIWLLNHMEL-------- 434 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~------------------~~~~~~~L~~L~Ls~n~~~-~~~lp~~~~~~~~~-------- 434 (594)
..++.|++.+|.+..++... ....+++|+.+++++|... .+..+........+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 34555666555444433211 1124667778888776522 22333333222111
Q ss_pred ------ccccccCCCcEEEcCCccccccC-ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCc
Q psy6452 435 ------KENGVFSNLISLHMQNTAAVMSN-VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS 507 (594)
Q Consensus 435 ------~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls 507 (594)
..+..+++|+.+++..+...... ...+..+.+++.++++.| ...+..|..+..+++|+.|+|+
T Consensus 408 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n----------~l~~~~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----------HTRVAFNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS----------CCEECCTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccchhhhhcccccccccccccccccccccccccc----------ccccccccccccchhhhhhhhh
Confidence 11234556666666666554433 345667777777777776 4444556677788999999999
Q ss_pred cccCc--cccccccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 508 NVQLN--CIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 508 ~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
+|.+. .+|..|..+++|++|+|++|+|+.+ |.+|.++++|++|+|++|+|+.++.. |..+++|++|+|++|+|+.+
T Consensus 478 ~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred hcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 99755 3577799999999999999999988 55899999999999999999988654 99999999999999999999
Q ss_pred CHhHHhhh
Q psy6452 584 TISLLCYL 591 (594)
Q Consensus 584 ~~~~~~~l 591 (594)
++..|..+
T Consensus 558 ~~~~l~~l 565 (635)
T 4g8a_A 558 KKQELQHF 565 (635)
T ss_dssp CSSCTTCC
T ss_pred CHHHHHhh
Confidence 99887655
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.09 Aligned_cols=398 Identities=16% Similarity=0.202 Sum_probs=288.9
Q ss_pred cchhhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 143 DENTVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
+.......+|+++++++|+++.+++.. +++|++|+|++|+++++++. .+.+++.++ .++++.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~--------------~L~Ls~ 107 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLK--------------YLNLMG 107 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCC--------------EEECTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCc--------------EEECCC
Confidence 334445567888888888888887654 67788888888888876632 233334333 234444
Q ss_pred ccccc-ccccCccCCCcccEEEccCCC-CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCC
Q psy6452 220 ELIDT-ELNCCNKQYHDIFTVNLSHQD-INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297 (594)
Q Consensus 220 n~~~~-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l 297 (594)
|.+.. ..+..+.++++|++|++++|+ +..+++..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.+
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---YQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---ECTTTTTTCSEEEEEEEECSBS
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---cChhhhhccccCceEecccCcc
Confidence 44443 345667888899999999987 677877778889999999999998655 3345567888899999999988
Q ss_pred CCCCC--cCCCcCccEEeccCCccccCc---hhhhhcc-----------------------ccccCCCcceEEcCCCCCC
Q psy6452 298 SELPD--FLNFKVLKELDISHNNFESMP---LCLQVHF-----------------------YVHIPYKHSQSDISHNNFE 349 (594)
Q Consensus 298 ~~lp~--~~~l~~L~~L~Ls~N~l~~lp---~~~~~~~-----------------------~~~~~~~L~~L~Ls~N~l~ 349 (594)
..+|. +..+++|++|++++|++++++ ..+.... ......+|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 87764 346899999999999998752 1110000 0011234455555555443
Q ss_pred CCCh-----------------------------------hhhccCCCCcEEECCCCCCCCCCCcc--ccCCccEEeCCCC
Q psy6452 350 SMPL-----------------------------------CLQVHFCKLVKLDISHNQIKILHKPR--CTHTLQTFSMNHN 392 (594)
Q Consensus 350 ~i~~-----------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~~L~~L~L~~N 392 (594)
++.. ..+....+|+.|++++|.++.++... ..++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 3211 11233468999999999998877654 3679999999999
Q ss_pred CCCCC-Cch-hhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 393 IGMKI-PEW-FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 393 ~~~~i-p~~-~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
.+... |.. ..+..+++|+.|++++|+ ...++... ..+..+++|++|++++|.++. .|..+..+++|++|
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L 415 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNH--LRSMQKTG------EILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFL 415 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSC--CCCHHHHH------HHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEE
T ss_pred ccccccccchhhhhccccCcEEEccCCc--ccccccch------hhhhcCCCCCEEECCCCCCcc-CChhhcccccccEE
Confidence 87653 221 224678999999999985 22333200 113567899999999999984 56778899999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| .+..+|..+ .++|++|+|++|+|+.++ ..+++|++|+|++|+|+.||. ...+++|++|
T Consensus 416 ~Ls~N-----------~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 416 NLSST-----------GIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVM 478 (549)
T ss_dssp ECTTS-----------CCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEE
T ss_pred ECCCC-----------Ccccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEE
Confidence 99996 344555443 268999999999999875 578999999999999999987 5678999999
Q ss_pred ECcCCCCCccCcc-cccCCCCcEEEccCCCCcccC
Q psy6452 551 DVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 551 ~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+|++|+|+.+|.. +..+++|++|++++|++..--
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 9999999977654 899999999999999997643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=330.34 Aligned_cols=384 Identities=16% Similarity=0.184 Sum_probs=277.4
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.+++.. +++|++|+|++|+++++.+ ..+..++.++. ++++.|.+. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~--------------L~Ls~N~l~-~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEY--------------LDLSHNKLV-KI 84 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCE--------------EECCSSCCC-EE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCE--------------EecCCCcee-ec
Confidence 57789999999999988654 7789999999999998753 23444444443 333444444 23
Q ss_pred ccCccCCCcccEEEccCCCCcccc-hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCC--CEEEcCCCCC--C-CC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL--IVLDLSHNKL--S-EL 300 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L--~~L~Ls~N~l--~-~l 300 (594)
+.. .+++|++|+|++|+|+.++ +..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ . ..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK------SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG------GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch------hhccccccceeeEEEeecccccccccc
Confidence 333 6899999999999999864 4668999999999999999765 335678888 9999999998 3 22
Q ss_pred C-Cc--------------------------CCCcCccEEeccCCc-------cccCchhhhhcc----------------
Q psy6452 301 P-DF--------------------------LNFKVLKELDISHNN-------FESMPLCLQVHF---------------- 330 (594)
Q Consensus 301 p-~~--------------------------~~l~~L~~L~Ls~N~-------l~~lp~~~~~~~---------------- 330 (594)
| .+ ..+++|+.|++++|. +.+..+.+....
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 2 12 235666777776664 211000110000
Q ss_pred -----ccccCCCcceEEcCCCCCC-CCChhhh----ccCCCCcEEECCCCCCCCCCCccc-----cCCccEEeCCCCCCC
Q psy6452 331 -----YVHIPYKHSQSDISHNNFE-SMPLCLQ----VHFCKLVKLDISHNQIKILHKPRC-----THTLQTFSMNHNIGM 395 (594)
Q Consensus 331 -----~~~~~~~L~~L~Ls~N~l~-~i~~~~~----~~l~~L~~L~Ls~N~l~~l~~~~~-----~~~L~~L~L~~N~~~ 395 (594)
......+|++|++++|.++ .+|...| .++++|+.+++++|.+ .++.... ..+|+.|++++|.+.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc
Confidence 0001137888888888877 5666553 5778888888888887 4442211 135888888888776
Q ss_pred CCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc--cCccccccCCCcceEeCC
Q psy6452 396 KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM--SNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 396 ~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls 473 (594)
.++. ...+++|+.|++++|+ +.+.+|. .+..+++|+.|++++|.+++ ..+..+..+++|++|+++
T Consensus 316 ~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 316 HMLC---PSKISPFLHLDFSNNL-LTDTVFE---------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCCC---CSSCCCCCEEECCSSC-CCTTTTT---------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred cccc---hhhCCcccEEEeECCc-cChhhhh---------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 6552 2578889999999875 4444443 23567789999999999887 445678889999999999
Q ss_pred CCcCcccccccccccccCccc-ccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEE
Q psy6452 474 NDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 551 (594)
+| ...+.+|.. +..+++|++|++++|.++ .+|..+. ++|++|+|++|+|+.+|..+..+++|++|+
T Consensus 383 ~N----------~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 383 QN----------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp SS----------CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred CC----------cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE
Confidence 86 333336654 667889999999999986 5555554 789999999999999988777999999999
Q ss_pred CcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 552 VSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 552 Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|++|+|+.+|.. +..+++|++|++++|+++.-
T Consensus 451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999887 88899999999999998863
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=315.97 Aligned_cols=338 Identities=19% Similarity=0.266 Sum_probs=279.9
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|++++|.+.+ .+++..|..+++|++|+|++|.++.+ | .|.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 689999999999999988889999999999999999754 47778889999999999999999966 4 5889999999
Q ss_pred EeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCCCCcccc----CCcc
Q psy6452 312 LDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKILHKPRCT----HTLQ 385 (594)
Q Consensus 312 L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~~L~ 385 (594)
|++++|.+++ ++... .+...++|++|++++|.++.+.+ ..|.++++|++|++++|.++++.+..+. .+|+
T Consensus 108 L~L~~n~l~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGN----FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp EECTTSCCBTHHHHSS----TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred EeCCCCCCCccccCcc----cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999987 33220 01223699999999999998854 4588999999999999999987765442 4899
Q ss_pred EEeCCCCCCCCCCchhh-------hcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC-
Q psy6452 386 TFSMNHNIGMKIPEWFW-------YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN- 457 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~-------~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~- 457 (594)
.|++++|.+..++.... ...+++|+.|++++|+ +.+.+|..+.... ...+|+.|++++|...+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAI------AGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHT------TTCCEEEEECTTCTTTSCCT
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccc------cccceeeEeecccccccccc
Confidence 99999998888876431 1255789999999975 6677776665432 2368999999988654432
Q ss_pred ---------cccccc--CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCc
Q psy6452 458 ---------VSQLKY--LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLE 525 (594)
Q Consensus 458 ---------~~~~~~--l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~ 525 (594)
...+.. .++|+.|++++| ...+..|..+..+++|++|+|++|.++.+ |..|..+++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKS----------KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSS----------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred chhhhccCcccccccccccCceEEEecCc----------cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 222322 368999999997 55566778889999999999999999977 45699999999
Q ss_pred EEEccCCCCccc-CccccCCCCCCEEECcCCCCCcc-CcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 526 KLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 526 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
+|+|++|+++.+ |..|..+++|++|+|++|+|+.+ |..+..+++|++|+|++|+++.+++..|..+.+|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 999999999988 55889999999999999999976 6679999999999999999999999988877654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=310.72 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=272.3
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCc
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVL 309 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L 309 (594)
.+++++.|++++|.++.++...|..+++|++|++++|.+++ +++..|..+++|++|+|++|.++.++ .|.++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 36899999999999999999999999999999999999654 67778899999999999999999886 37899999
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeC
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSM 389 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L 389 (594)
++|++++|.++.+|..++. ..++|++|++++|.++.+++..|.++++|++|++++|+++.++ ....++|+.|++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFH-----NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCHHHhc-----CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeec
Confidence 9999999999999876542 2379999999999999999998999999999999999999875 345579999999
Q ss_pred CCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcce
Q psy6452 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469 (594)
Q Consensus 390 ~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 469 (594)
++|.+..++ ..++|+.|++++|. ...+|. ..+++|+.|++++|.+++. ..+..+++|+.
T Consensus 194 ~~n~l~~~~------~~~~L~~L~l~~n~--l~~~~~-----------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 194 SYNLLSTLA------IPIAVEELDASHNS--INVVRG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp CSSCCSEEE------CCSSCSEEECCSSC--CCEEEC-----------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccccccccC------CCCcceEEECCCCe--eeeccc-----------cccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 999877654 34689999999985 222232 2356999999999999875 57899999999
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCE
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 549 (594)
|++++| ...+..|..+..+++|++|+|++|+++.+|..+..+++|++|+|++|+++.+|..+..+++|++
T Consensus 253 L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 253 VDLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322 (390)
T ss_dssp EECCSS----------CCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSE
T ss_pred EECCCC----------cCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCE
Confidence 999997 3444457788899999999999999999998888999999999999999999988889999999
Q ss_pred EECcCCCCCccCcccccCCCCcEEEccCCCCcccC
Q psy6452 550 LDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 550 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|+|++|+|+.++ +..+++|++|++++|+|+.-.
T Consensus 323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred EECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 999999999886 678999999999999998643
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=319.52 Aligned_cols=381 Identities=19% Similarity=0.210 Sum_probs=237.0
Q ss_pred ccchhhhccCccEEecCCCCCcccChhh--hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 142 MDENTVKTEALSTRTFCDHELQSIEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~n~l~~ip~~~--l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
+....++...|+.+.+++|.++.||..+ +++|++|++++|++++..+. .+..+..+......... ..-...++++.
T Consensus 3 ~~p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~-~~~l~~L~l~~ 80 (454)
T 1jl5_A 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL-DRQAHELELNN 80 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH-HHTCSEEECTT
T ss_pred ccccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh-ccCCCEEEecC
Confidence 3444556677889999999999999877 88999999999999875533 12222222111000000 00112334444
Q ss_pred cccccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCC
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~ 299 (594)
+.+++ ++. ..++|++|++++|+++.++. .+++|++|++++|+++++..+ .++|++|++++|++++
T Consensus 81 ~~l~~-lp~---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 81 LGLSS-LPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp SCCSC-CCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSS
T ss_pred Ccccc-CCC---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCC
Confidence 44333 122 24689999999999999874 358999999999997775322 2689999999999999
Q ss_pred CCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcc
Q psy6452 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR 379 (594)
Q Consensus 300 lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 379 (594)
+|+|.++++|++|++++|+++++|... .+|++|++++|+++.++ .+.++++|++|++++|++++++.
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~lp~~~---------~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKKLPDLP---------PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSCCCCCC---------TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC--
T ss_pred CcccCCCCCCCEEECCCCcCcccCCCc---------ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC--
Confidence 999999999999999999999988532 58999999999999987 36799999999999999998654
Q ss_pred ccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcc
Q psy6452 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVS 459 (594)
Q Consensus 380 ~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 459 (594)
..++|+.|++++|.+..+|. +..+++|+.|++++|+ + ..+|. .+++|+.|++++|.+++.. .
T Consensus 213 ~~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~-l-~~l~~------------~~~~L~~L~l~~N~l~~l~-~ 274 (454)
T 1jl5_A 213 LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNL-L-KTLPD------------LPPSLEALNVRDNYLTDLP-E 274 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSC-C-SSCCS------------CCTTCCEEECCSSCCSCCC-C
T ss_pred CcCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCc-C-Ccccc------------cccccCEEECCCCcccccC-c
Confidence 34689999999999988885 4689999999999975 2 23442 1246667777776666532 1
Q ss_pred ccccCCCcceEeCCCCcCcccccc---c------ccccccCcccccCC-CCCcEEeCccccCccccccccCCCCCcEEEc
Q psy6452 460 QLKYLKNIKYLNCSNDIDHRKSQD---F------VNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n~~~~~~~~---~------~n~~~~ip~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 529 (594)
..++|+.|++++|.+...... . .|.+..++ .+ ++|++|++++|+++.+|.. +++|++|++
T Consensus 275 ---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 275 ---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIA 344 (454)
T ss_dssp ---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred ---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccccccc---CCcCCEEEC
Confidence 125566666666533321000 0 01122222 22 5889999999999888764 588999999
Q ss_pred cCCCCcccCccccCCCCCCEEECcCCCCCc---cCcccccC-------------CCCcEEEccCCCCccc
Q psy6452 530 SHNKVYKLPESFANLKSLKILDVSYNKLTM---LPDGFVML-------------SNLTTFYAQRKYWMFL 583 (594)
Q Consensus 530 s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---ip~~l~~l-------------~~L~~L~L~~N~l~~l 583 (594)
++|+++.+|. .+++|++|++++|+++. +|.++..+ ++|++|++++|+++.+
T Consensus 345 ~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 345 SFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred CCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 9999999887 47899999999999986 56777777 7899999999999853
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=311.56 Aligned_cols=340 Identities=21% Similarity=0.253 Sum_probs=290.1
Q ss_pred CcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEc
Q psy6452 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNL 241 (594)
Q Consensus 162 l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L 241 (594)
...++...+++++.|++++|.++.++ . +..+++|++|+|
T Consensus 37 ~~~i~~~~l~~l~~L~l~~~~i~~l~---------~--------------------------------~~~l~~L~~L~L 75 (466)
T 1o6v_A 37 TDTVSQTDLDQVTTLQADRLGIKSID---------G--------------------------------VEYLNNLTQINF 75 (466)
T ss_dssp TSEECHHHHHTCCEEECCSSCCCCCT---------T--------------------------------GGGCTTCCEEEC
T ss_pred ccccChhHhccccEEecCCCCCccCc---------c--------------------------------hhhhcCCCEEEC
Confidence 45566666899999999999988765 1 134689999999
Q ss_pred cCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCcccc
Q psy6452 242 SHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFES 321 (594)
Q Consensus 242 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~ 321 (594)
++|.++.+++ |..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.+..+++|++|++++|.++.
T Consensus 76 s~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADI---TP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred CCCccCCchh--hhccccCCEEECCCCccccC---hh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence 9999999987 89999999999999997764 33 68999999999999999999999999999999999999998
Q ss_pred CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchh
Q psy6452 322 MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401 (594)
Q Consensus 322 lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~ 401 (594)
++. + ...++|++|+++ |.+..++. +.++++|+.|++++|.++.++.....++|+.|++++|.+..++.
T Consensus 149 ~~~-~------~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 149 ISA-L------SGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp CGG-G------TTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred Chh-h------ccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence 873 2 223699999996 56666655 67999999999999999998776677899999999999888876
Q ss_pred hhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccc
Q psy6452 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKS 481 (594)
Q Consensus 402 ~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 481 (594)
+..+++|+.|++++|. + ..+ ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 217 -~~~l~~L~~L~l~~n~-l-~~~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n------ 275 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQ-L-KDI----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN------ 275 (466)
T ss_dssp -GGGCTTCCEEECCSSC-C-CCC----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS------
T ss_pred -ccccCCCCEEECCCCC-c-ccc----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC------
Confidence 3679999999999985 2 222 234567899999999999988765 889999999999996
Q ss_pred cccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC
Q psy6452 482 QDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 482 ~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+..+|. +..+++|+.|++++|+++.++. +..+++|+.|+|++|+++.++. +..+++|+.|++++|+++.++
T Consensus 276 -----~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 276 -----QISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp -----CCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred -----ccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence 3444554 7789999999999999998876 8899999999999999998865 789999999999999999884
Q ss_pred cccccCCCCcEEEccCCCCcccCHhHHhhhhC
Q psy6452 562 DGFVMLSNLTTFYAQRKYWMFLTISLLCYLMG 593 (594)
Q Consensus 562 ~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 593 (594)
.+..+++|++|++++|+++.+++ +..+.+
T Consensus 348 -~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 376 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQISDLTP--LANLTR 376 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred -hhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence 68999999999999999998876 555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=315.14 Aligned_cols=315 Identities=21% Similarity=0.241 Sum_probs=240.1
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+++++.||....+++++|+|++|+++++. +..|.++
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~---------------------------------------~~~~~~l 55 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN---------------------------------------QDEFASF 55 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC---------------------------------------TTTTTTC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC---------------------------------------HhHccCC
Confidence 4566788899999988899999999999999865 2234567
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|.|+.+.+..|.++++|++|+|++|+++. ++...|..+++|++|+|++|.++.++ .|..+++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 899999999999999988889999999999999999655 67788889999999999999999664 5889999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|++++|.++.++...+. ..++|+.|++++|.++.++...|.++++|+.|++++|.++.+....
T Consensus 133 L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~------------ 195 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFS-----GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS------------ 195 (477)
T ss_dssp EEECCTTCCEECTTSST-----TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC------------
T ss_pred EECCCCccceeChhhcc-----CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh------------
Confidence 99999999987654332 2368999999999999999888889999999999999988765432
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
+..+++|+.|++++|+ ..+.+|.... ...+|+.|++++|.++......+..+++|+.|+
T Consensus 196 -----------~~~l~~L~~L~l~~~~-~~~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 196 -----------FKRLYRLKVLEISHWP-YLDTMTPNCL---------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp -----------SCSCTTCCEEEEECCT-TCCEECTTTT---------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred -----------cccCcccceeeCCCCc-cccccCcccc---------cCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 2456677777777653 3344443221 123677788888777776666777777777777
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKI 549 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~ 549 (594)
+++| ...+..+..+..+++|+.|+|++|+++.+ |..|..+++|++|+|++|+|+.++. .|..+++|+.
T Consensus 255 Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 255 LSYN----------PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CCSS----------CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred CCCC----------cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 7775 22222234566677777777777777755 4457777777777777777777755 5667777777
Q ss_pred EECcCCCCC
Q psy6452 550 LDVSYNKLT 558 (594)
Q Consensus 550 L~Ls~N~l~ 558 (594)
|+|++|+++
T Consensus 325 L~l~~N~l~ 333 (477)
T 2id5_A 325 LILDSNPLA 333 (477)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcc
Confidence 777777776
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=321.54 Aligned_cols=363 Identities=16% Similarity=0.186 Sum_probs=264.4
Q ss_pred cCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 150 EALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.+++.+++++|.++.+++.. +++|++|+|++|+|+++.+ ..+.+++.++. ++++.|.+. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~--------------L~Ls~N~l~-~l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEY--------------LDVSHNRLQ-NI 115 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCE--------------EECTTSCCC-EE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCE--------------EECCCCcCC-cc
Confidence 45678888888888888654 6788888888888887753 33344444433 334444444 33
Q ss_pred ccCccCCCcccEEEccCCCCcccc-hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCC--CEEEcCCCCC--CCC-
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL--IVLDLSHNKL--SEL- 300 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L--~~L~Ls~N~l--~~l- 300 (594)
+.. .+++|++|+|++|+++.++ +..|.++++|++|++++|++++. .+..+++| ++|++++|.+ +..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------chhhhhhceeeEEEeecccccccccC
Confidence 333 6899999999999999987 36789999999999999997652 23455666 9999999998 422
Q ss_pred C-Cc--------------------------CCCcCccEEeccCCccc--cCchhhhh-----------------------
Q psy6452 301 P-DF--------------------------LNFKVLKELDISHNNFE--SMPLCLQV----------------------- 328 (594)
Q Consensus 301 p-~~--------------------------~~l~~L~~L~Ls~N~l~--~lp~~~~~----------------------- 328 (594)
| .+ ..+++|+.|++++|... .++..+..
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 2 12 24556777777776310 00000000
Q ss_pred -ccccccCCCcceEEcCCCCCC-CCChhhhc------------------------------cCCCCcEEECCCCCCCCCC
Q psy6452 329 -HFYVHIPYKHSQSDISHNNFE-SMPLCLQV------------------------------HFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 329 -~~~~~~~~~L~~L~Ls~N~l~-~i~~~~~~------------------------------~l~~L~~L~Ls~N~l~~l~ 376 (594)
........+|++|++++|.++ .+|...|. ...+|+.|++++|.+..+.
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 000001137788888888777 55554421 1246889999999987766
Q ss_pred CccccCCccEEeCCCCCCCC-CCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc
Q psy6452 377 KPRCTHTLQTFSMNHNIGMK-IPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455 (594)
Q Consensus 377 ~~~~~~~L~~L~L~~N~~~~-ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 455 (594)
.....++|++|++++|.+.. +|..+ ..+++|+.|++++|+ +. .++... ..+..+++|+.|++++|.+++
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~-~~~~~~------~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNG-LK-NFFKVA------LMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSC-CC-BTTHHH------HTTTTCTTCCEEECTTSCCBS
T ss_pred CccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCC-cC-Ccccch------hhhcCCCCCCEEECCCCcCCC
Confidence 54567799999999998877 45443 789999999999985 22 222110 123567899999999999998
Q ss_pred -cCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCC
Q psy6452 456 -SNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 456 -~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l 534 (594)
.....+..+++|++|++++| ...+.+|..+. ++|+.|+|++|+|+.+|..+..+++|++|+|++|+|
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n----------~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSN----------MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSS----------CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred ccChhhhcCcccCCEEECCCC----------CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 55566899999999999998 34445554443 699999999999999999877999999999999999
Q ss_pred cccCcc-ccCCCCCCEEECcCCCCC
Q psy6452 535 YKLPES-FANLKSLKILDVSYNKLT 558 (594)
Q Consensus 535 ~~lp~~-~~~l~~L~~L~Ls~N~l~ 558 (594)
+.+|.. |..+++|+.|++++|+++
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcC
Confidence 999886 999999999999999998
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=318.01 Aligned_cols=309 Identities=16% Similarity=0.184 Sum_probs=270.8
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
+.+++.|++++|.++.+|+..|..+++|++|+|++|.+++ +++..|..+++|++|+|++|.++.++ .|.++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 5789999999999999999999999999999999999655 66777899999999999999999887 378999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|+|++|.++.+|..++.. .++|++|++++|.++.+++..|.++++|++|++++|.+++++ ....++|+.|+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHN-----TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECC
T ss_pred EEEeeCCCCCCCCHHHhcc-----CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcc
Confidence 9999999999998765422 379999999999999999988999999999999999999875 3446799999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..++ ..++|+.|++++|. ...+|. ...++|+.|++++|.+++. ..+..+++|+.|
T Consensus 201 ~n~l~~l~------~~~~L~~L~ls~n~--l~~~~~-----------~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L 259 (597)
T 3oja_B 201 YNLLSTLA------IPIAVEELDASHNS--INVVRG-----------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 259 (597)
T ss_dssp SSCCSEEE------CCTTCSEEECCSSC--CCEEEC-----------SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCcccccc------CCchhheeeccCCc--cccccc-----------ccCCCCCEEECCCCCCCCC--hhhccCCCCCEE
Confidence 99877654 35689999999985 222222 2236899999999999874 678999999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| ...+..|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|++|
T Consensus 260 ~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 260 DLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp ECCSS----------CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred ECCCC----------ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 99997 45556688899999999999999999999988889999999999999999999989999999999
Q ss_pred ECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 551 DVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 551 ~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
+|++|+|+.+| +..+++|+.|++++|+|+.-
T Consensus 330 ~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999999886 67889999999999999753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=303.07 Aligned_cols=343 Identities=21% Similarity=0.249 Sum_probs=247.2
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
.++.+++++|+++.+|. .+++|++|++++|++++++.. ...++.+ +++.|.+.. ++.
T Consensus 72 ~l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~--~~~L~~L-----------------~l~~n~l~~-l~~-- 128 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL--PQSLKSL-----------------LVDNNNLKA-LSD-- 128 (454)
T ss_dssp TCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC--CTTCCEE-----------------ECCSSCCSC-CCS--
T ss_pred CCCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc--cCCCcEE-----------------ECCCCccCc-ccC--
Confidence 46899999999999987 468899999999999986521 2222222 223333322 111
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..++|++|++++|+++.++. |.++++|++|++++|+++++ |. ...+|++|++++|+++.+|++.++++|+
T Consensus 129 -~~~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l---p~----~~~~L~~L~L~~n~l~~l~~~~~l~~L~ 198 (454)
T 1jl5_A 129 -LPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL---PD----LPPSLEFIAAGNNQLEELPELQNLPFLT 198 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCC---CC----CCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred -CCCCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCccc---CC----CcccccEEECcCCcCCcCccccCCCCCC
Confidence 12689999999999999883 89999999999999997764 43 2369999999999999999999999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|. .+.+|++|++++|.++.+|. +..+++|++|++++|++++++. ..++|+.|+++
T Consensus 199 ~L~l~~N~l~~l~~---------~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~ 265 (454)
T 1jl5_A 199 AIYADNNSLKKLPD---------LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVR 265 (454)
T ss_dssp EEECCSSCCSSCCC---------CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECC
T ss_pred EEECCCCcCCcCCC---------CcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECC
Confidence 99999999999874 23699999999999999984 6799999999999999998764 45799999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccC-CCcce
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL-KNIKY 469 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~ 469 (594)
+|.+..+|.. .++|+.|++++|. +.+ +|. ..++|+.|++++|.+++.. .+ ++|++
T Consensus 266 ~N~l~~l~~~-----~~~L~~L~ls~N~-l~~-l~~------------~~~~L~~L~l~~N~l~~i~-----~~~~~L~~ 321 (454)
T 1jl5_A 266 DNYLTDLPEL-----PQSLTFLDVSENI-FSG-LSE------------LPPNLYYLNASSNEIRSLC-----DLPPSLEE 321 (454)
T ss_dssp SSCCSCCCCC-----CTTCCEEECCSSC-CSE-ESC------------CCTTCCEEECCSSCCSEEC-----CCCTTCCE
T ss_pred CCcccccCcc-----cCcCCEEECcCCc-cCc-ccC------------cCCcCCEEECcCCcCCccc-----CCcCcCCE
Confidence 9999998864 4789999999985 222 221 1258999999999998742 23 58999
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc---cCccccCC--
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK---LPESFANL-- 544 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l-- 544 (594)
|++++| .+..+|.. +++|++|++++|+++.+|. .+++|++|++++|+++. +|.++..+
T Consensus 322 L~Ls~N-----------~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 322 LNVSNN-----------KLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp EECCSS-----------CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred EECCCC-----------cccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 999996 34456654 5899999999999999988 57999999999999997 56677766
Q ss_pred -----------CCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 545 -----------KSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 545 -----------~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
++|++|++++|+++.+|.- -.+++.|.+.+|.+...
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDP 431 (454)
T ss_dssp CC------------------------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCc
Confidence 8899999999999954321 13567777888877653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=301.76 Aligned_cols=308 Identities=20% Similarity=0.263 Sum_probs=223.6
Q ss_pred hhhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccc
Q psy6452 146 TVKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELI 222 (594)
Q Consensus 146 ~~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~ 222 (594)
.+...+++.+++.++.++.+|... +++|++|+|++|.++++++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~---------------------------------- 86 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT---------------------------------- 86 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT----------------------------------
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh----------------------------------
Confidence 344556777888888888888765 5678888888887776541
Q ss_pred ccccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-
Q psy6452 223 DTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP- 301 (594)
Q Consensus 223 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp- 301 (594)
..|..+++|++|+|++|+++.+++..|.++++|++|++++|.++. ++..+|..+++|++|++++|.++.++
T Consensus 87 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 87 -----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred -----hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc---CCHHHhcCCCCCcEEECCCCccCccCh
Confidence 123456778888888888888777777778888888888887553 56666777788888888888877665
Q ss_pred -CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc
Q psy6452 302 -DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 302 -~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
.|..+++|++|++++|.++.++.. ..++|+.|++++|.++.++ ..++|+.|++++|.++.++.. .
T Consensus 159 ~~~~~l~~L~~L~l~~n~l~~~~~~--------~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~-~ 224 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP-V 224 (390)
T ss_dssp TTTSSCTTCCEEECCSSCCSBCCGG--------GCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC-C
T ss_pred hhccCCCCCCEEECCCCcCCccccc--------cccccceeecccccccccC-----CCCcceEEECCCCeeeecccc-c
Confidence 367777888888888877766421 1246666666666665443 233566666666666655322 2
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 460 (594)
.++|+.|++++|.+..++ .+..+++|+.|++++|.+++..+..
T Consensus 225 ~~~L~~L~l~~n~l~~~~-------------------------------------~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTA-------------------------------------WLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSSCCEEECCSSCCCCCG-------------------------------------GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccccEEECCCCCCcccH-------------------------------------HHcCCCCccEEECCCCcCCCcChhH
Confidence 234444444444443321 2234557777777777788777888
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
|..+++|+.|++++| .+..+|..+..+++|++|+|++|+++.+|..+..+++|++|+|++|+|+.++
T Consensus 268 ~~~l~~L~~L~L~~n-----------~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 268 FVKMQRLERLYISNN-----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp GTTCSSCCEEECCSS-----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred ccccccCCEEECCCC-----------cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence 899999999999995 4555676777889999999999999999988989999999999999999886
Q ss_pred ccCCCCCCEEECcCCCCCc
Q psy6452 541 FANLKSLKILDVSYNKLTM 559 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ 559 (594)
+..+++|+.|++++|+++.
T Consensus 335 ~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCTTCCCSEEECCSSCEEH
T ss_pred chhhccCCEEEcCCCCccc
Confidence 7788999999999999983
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=290.73 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=260.6
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..+++|++|+++++.++.++. +..+++|++|++++|.++++ ++ +..+++|++|++++|.++.++.|..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~---~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI---SP--LSNLVKLTNLYIGTNKITDISALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccc---hh--hhcCCcCCEEEccCCcccCchHHcCCCcCC
Confidence 457899999999999999976 78999999999999997764 44 689999999999999999999999999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++.++. + ...++|+.|++++|........ +..+++|++|++++|.++.+......++|+.|+++
T Consensus 114 ~L~l~~n~i~~~~~-~------~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 114 ELYLNEDNISDISP-L------ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp EEECTTSCCCCCGG-G------TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred EEECcCCcccCchh-h------ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 99999999999875 2 2337999999999955543333 67999999999999999998876677899999999
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..++. +..+++|+.|++++|. +.+ ++ .+..+++|+.|++++|.++...+ +..+++|+.|
T Consensus 186 ~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~-~~----------~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 186 YNQIEDISP---LASLTSLHYFTAYVNQ-ITD-IT----------PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp TSCCCCCGG---GGGCTTCCEEECCSSC-CCC-CG----------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCccccccc---ccCCCccceeecccCC-CCC-Cc----------hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 999998887 4789999999999975 222 21 14567899999999999988765 8899999999
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc-CccccCCCCCCE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKI 549 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 549 (594)
++++| .+..+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|+++.+ +..+..+++|++
T Consensus 249 ~l~~n-----------~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 249 EIGTN-----------QISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp ECCSS-----------CCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred ECCCC-----------ccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 99996 33344 35788999999999999999985 588999999999999999966 457899999999
Q ss_pred EECcCCCCCccCcccccCCCCcEEEccCCCCcc
Q psy6452 550 LDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 550 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
|++++|+++.++. +..+++|++|++++|+|+.
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC----
T ss_pred EEccCCccccccC-hhhhhccceeehhhhcccC
Confidence 9999999998866 8899999999999999873
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=312.17 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=227.7
Q ss_pred hhccCccEEecCCCCCcccChhh---hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 147 VKTEALSTRTFCDHELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 147 ~~~~~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
+...+++.+++.+|.++.+|..+ +++|++|+|++|.++++++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~----------------------------------- 92 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT----------------------------------- 92 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----------------------------------
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----------------------------------
Confidence 33456678888888888888766 6678888888888887651
Q ss_pred cccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--
Q psy6452 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-- 301 (594)
Q Consensus 224 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-- 301 (594)
..|..+++|++|+|++|.|+.+++..|.++++|++|+|++|.+++ +|+.+|+.+++|++|+|++|.++.++
T Consensus 93 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 93 ----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred ----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC---CCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 233456788888888888888888888888888888888888554 66777778888888888888888665
Q ss_pred CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc
Q psy6452 302 DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT 381 (594)
Q Consensus 302 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 381 (594)
.|..+++|++|++++|.+++++... .++|+.|++++|.++.++ ..++|+.|++++|.++.++... .
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~~~~--------l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~-~ 231 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVDLSL--------IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV-N 231 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCGGG--------CTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC-C
T ss_pred hhhcCCcCcEEECcCCCCCCcChhh--------hhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc-C
Confidence 3778888888888888888765321 256777777777666543 3346677777777766554322 2
Q ss_pred CCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc
Q psy6452 382 HTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 461 (594)
++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..|
T Consensus 232 ~~L~~L~L~~n~l~~~-------------------------------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-------------------------------------AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SCCCEEECCSSCCCCC-------------------------------------GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred CCCCEEECCCCCCCCC-------------------------------------hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 3455555555444332 122345577777777777888778888
Q ss_pred ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccc
Q psy6452 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESF 541 (594)
Q Consensus 462 ~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~ 541 (594)
..+++|+.|++++| .+..+|..+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.|+.++ +
T Consensus 275 ~~l~~L~~L~Ls~N-----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~ 341 (597)
T 3oja_B 275 VKMQRLERLYISNN-----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--L 341 (597)
T ss_dssp TTCSSCCEEECTTS-----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--C
T ss_pred cCccCCCEEECCCC-----------CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--h
Confidence 88999999999985 4455677777788999999999999999988888999999999999999885 6
Q ss_pred cCCCCCCEEECcCCCCC
Q psy6452 542 ANLKSLKILDVSYNKLT 558 (594)
Q Consensus 542 ~~l~~L~~L~Ls~N~l~ 558 (594)
..+++|+.|+|++|+++
T Consensus 342 ~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhcCCCCEEEeeCCCCC
Confidence 77889999999999988
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=301.43 Aligned_cols=308 Identities=16% Similarity=0.172 Sum_probs=171.5
Q ss_pred hhhhccCccEEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 145 NTVKTEALSTRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 145 ~~~~~~~L~~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
...+..+|+.+++++|.++.+|... +++|++|+|++|++++++ +..++.++. ++++.|.+.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~--------------L~Ls~N~l~ 98 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTY--------------LACDSNKLT 98 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSE--------------EECCSSCCS
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc----cccCCCCCE--------------EECcCCCCc
Confidence 3344567889999999999987433 889999999999998863 222222221 122222222
Q ss_pred cccccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC-CCCCCCC
Q psy6452 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELPD 302 (594)
Q Consensus 224 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 302 (594)
+. .+.++++|++|++++|+++.++ +..+++|++|++++|+++++ + ++.+++|++|++++| .+..+ .
T Consensus 99 ~~---~~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~---l~~l~~L~~L~l~~n~~~~~~-~ 165 (457)
T 3bz5_A 99 NL---DVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---D---VSHNTQLTELDCHLNKKITKL-D 165 (457)
T ss_dssp CC---CCTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---C---CTTCTTCCEEECTTCSCCCCC-C
T ss_pred ee---ecCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---c---cccCCcCCEEECCCCCccccc-c
Confidence 21 1344555555555555555543 44555555555555554442 1 244555555555555 23333 3
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+..+++|++|++++|+++++| + ...++|+.|++++|.++.++ +..+++|++|++++|++++++ ....+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l------~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip-~~~l~ 233 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--V------SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID-VTPLT 233 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--C------TTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred cccCCcCCEEECCCCccceec--c------ccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC-ccccC
Confidence 455555555555555555544 1 11135555555555555542 345555555555555555544 22334
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|+.|++++|.+..+|. ..+++|+.|++++| +|+.|++++|.+.+..+ +.
T Consensus 234 ~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n------------------------~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV----STLSKLTTLHCIQT------------------------DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp TCSEEECCSSCCSCCCC----TTCTTCCEEECTTC------------------------CCSCCCCTTCTTCCEEE--CT
T ss_pred CCCEEEeeCCcCCCcCH----HHCCCCCEEeccCC------------------------CCCEEECCCCccCCccc--cc
Confidence 55555555555555442 23445555555443 55666666666555544 45
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcc--------cccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCC
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPL--------SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~--------~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l 534 (594)
.+++|+.|++++|. ..+.+|. .+.++++|++|++++|+|+.++ +..+++|+.|++++|+|
T Consensus 284 ~l~~L~~L~Ls~n~----------~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 284 GCRKIKELDVTHNT----------QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCTTCCCCCCTTCT----------TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccccCCEEECCCCc----------ccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence 67778888887772 3333332 1344566667777777666653 66666777777777766
Q ss_pred ccc
Q psy6452 535 YKL 537 (594)
Q Consensus 535 ~~l 537 (594)
+.+
T Consensus 352 ~~l 354 (457)
T 3bz5_A 352 QDF 354 (457)
T ss_dssp CBC
T ss_pred CCc
Confidence 654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=283.58 Aligned_cols=281 Identities=22% Similarity=0.247 Sum_probs=195.8
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|++++|+++.+++ |..+++|++|++++|.++++ + .+..+++|++|++++|.++.++.+..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~--~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---S--ALQNLTNLRELYLNEDNISDISPLANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---G--GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---h--HHcCCCcCCEEECcCCcccCchhhccCCceeEE
Confidence 4666777777777766665 56667777777777765543 2 245667777777777777666666666777777
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|........+ ...++|++|++++|.+..++. +..+++|+.|++++|.+++++.....++|+.+++++|
T Consensus 138 ~l~~n~~~~~~~~~------~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 138 NLGANHNLSDLSPL------SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp ECTTCTTCCCCGGG------TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCCCcccccch------hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccC
Confidence 77776433322122 222466777777777666655 4566777777777777776665555566777777777
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++. +..+++|+.|++++|. ...++. +..+++|+.|++++|.++.. ..+..+++|++|++
T Consensus 210 ~l~~~~~---~~~~~~L~~L~l~~n~--l~~~~~----------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 210 QITDITP---VANMTRLNSLKIGNNK--ITDLSP----------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272 (347)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSC--CCCCGG----------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CCCCCch---hhcCCcCCEEEccCCc--cCCCcc----------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence 6666655 3567777777777764 112221 34567888888888888765 56888999999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCccccCCCCCCEEE
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 551 (594)
++| .+..+| .+..+++|+.|++++|.++.+ |..+..+++|++|+|++|+++.++. +..+++|++|+
T Consensus 273 ~~n-----------~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 273 GSN-----------QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CSS-----------CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES
T ss_pred cCC-----------ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee
Confidence 996 334443 577889999999999999955 4558999999999999999998876 88899999999
Q ss_pred CcCCCCC
Q psy6452 552 VSYNKLT 558 (594)
Q Consensus 552 Ls~N~l~ 558 (594)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999986
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=298.23 Aligned_cols=314 Identities=20% Similarity=0.236 Sum_probs=247.8
Q ss_pred cEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEec
Q psy6452 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDI 314 (594)
Q Consensus 237 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~L 314 (594)
+.+++++++++.+|... .+++++|+|++|++++ +++..|..+++|++|+|++|.++.++ .|.++++|++|+|
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 56777778888777643 2577888888888544 55566777888888888888877653 4777888888888
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNHN 392 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N 392 (594)
++|.++.+|...+.. .++|++|+|++|.++.+++..|.++++|+.|++++|.++.+.+..+ .++|+.|++++|
T Consensus 88 ~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 88 RSNRLKLIPLGVFTG-----LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CSSCCCSCCTTSSTT-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CCCcCCccCcccccC-----CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 888888777654322 2578888888888887777777788888888888888877765443 357888888888
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++... +..+++|+.|++++|. +.+ ++ ...+..+++|+.|++++|...+..+..+....+|+.|++
T Consensus 163 ~l~~~~~~~-l~~l~~L~~L~l~~n~-i~~-~~--------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 163 NLTSIPTEA-LSHLHGLIVLRLRHLN-INA-IR--------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp CCSSCCHHH-HTTCTTCCEEEEESCC-CCE-EC--------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred cCcccChhH-hcccCCCcEEeCCCCc-CcE-eC--------hhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 888887765 5789999999999975 221 22 224566789999999999887777766666679999999
Q ss_pred CCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccCCCCCCE
Q psy6452 473 SNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFANLKSLKI 549 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 549 (594)
++| .+..+| ..+..+++|+.|+|++|.|+.++.. |..+++|+.|+|++|+++.+ |..|..+++|++
T Consensus 232 ~~n-----------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 232 THC-----------NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp ESS-----------CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred cCC-----------cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE
Confidence 995 455666 4678899999999999999988664 89999999999999999987 568999999999
Q ss_pred EECcCCCCCccCcc-cccCCCCcEEEccCCCCccc
Q psy6452 550 LDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 550 L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l 583 (594)
|+|++|+|+.+|.. |..+++|++|+|++|+|+.-
T Consensus 301 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred EECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999998776 88999999999999999853
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=289.56 Aligned_cols=337 Identities=18% Similarity=0.168 Sum_probs=247.0
Q ss_pred ChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCC
Q psy6452 166 EDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQD 245 (594)
Q Consensus 166 p~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 245 (594)
+...+++|++|++++|.+++++ . +..+++|++|+|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~---------~--------------------------------l~~l~~L~~L~Ls~n~ 75 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT---------G--------------------------------IEKLTGLTKLICTSNN 75 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT---------T--------------------------------GGGCTTCSEEECCSSC
T ss_pred ChhHcCCCCEEEccCCCcccCh---------h--------------------------------hcccCCCCEEEccCCc
Confidence 3333899999999999999764 1 1346788888888888
Q ss_pred CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchh
Q psy6452 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLC 325 (594)
Q Consensus 246 l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~ 325 (594)
|+.++ +..+++|++|++++|.++++ + ++.+++|++|++++|+++.++ +..+++|++|++++|++++++
T Consensus 76 l~~~~---~~~l~~L~~L~Ls~N~l~~~---~---~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-- 143 (457)
T 3bz5_A 76 ITTLD---LSQNTNLTYLACDSNKLTNL---D---VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-- 143 (457)
T ss_dssp CSCCC---CTTCTTCSEEECCSSCCSCC---C---CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--
T ss_pred CCeEc---cccCCCCCEEECcCCCCcee---e---cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--
Confidence 88875 67888888888888887764 2 567888888888888888875 788888888888888888875
Q ss_pred hhhccccccCCCcceEEcCCC-CCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhc
Q psy6452 326 LQVHFYVHIPYKHSQSDISHN-NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404 (594)
Q Consensus 326 ~~~~~~~~~~~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~ 404 (594)
+ ...++|++|++++| .+..++ +..+++|++|++++|++++++ ....++|+.|++++|.+..++ +.
T Consensus 144 l------~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~----l~ 209 (457)
T 3bz5_A 144 V------SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD----LN 209 (457)
T ss_dssp C------TTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC----CT
T ss_pred c------ccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec----cc
Confidence 1 22367888888888 455552 457888888888888888876 444568888888888887774 36
Q ss_pred ccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccc
Q psy6452 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDF 484 (594)
Q Consensus 405 ~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 484 (594)
.+++|+.|++++|+ +.+ +| +..+++|+.|++++|.+++..+.. +++|+.|++++|.+....-..
T Consensus 210 ~l~~L~~L~Ls~N~-l~~-ip-----------~~~l~~L~~L~l~~N~l~~~~~~~---l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 210 QNIQLTFLDCSSNK-LTE-ID-----------VTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp TCTTCSEEECCSSC-CSC-CC-----------CTTCTTCSEEECCSSCCSCCCCTT---CTTCCEEECTTCCCSCCCCTT
T ss_pred cCCCCCEEECcCCc-ccc-cC-----------ccccCCCCEEEeeCCcCCCcCHHH---CCCCCEEeccCCCCCEEECCC
Confidence 78888888888875 222 33 345678888888888888875444 444444444443332221111
Q ss_pred ccccccCcccccCCCCCcEEeCccccCc-cccc--------cccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCC
Q psy6452 485 VNVLWELPLSILYLSSIQELHLSNVQLN-CIPE--------DIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555 (594)
Q Consensus 485 ~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~--------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 555 (594)
-...+.+| +..+++|+.|++++|... .+|. .+.++++|++|+|++|+|+.++ +..+++|+.|++++|
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS
T ss_pred CccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC
Confidence 14566666 467899999999999643 4432 2677889999999999999984 889999999999999
Q ss_pred CCCccCcc--c----------ccCCCCcEEEccCCCCc-ccCHhHHh
Q psy6452 556 KLTMLPDG--F----------VMLSNLTTFYAQRKYWM-FLTISLLC 589 (594)
Q Consensus 556 ~l~~ip~~--l----------~~l~~L~~L~L~~N~l~-~l~~~~~~ 589 (594)
+|+.++.- + ..+..|+.+++++|.++ .||.+++.
T Consensus 350 ~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 350 HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 99976421 1 12356788899999988 56766543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=275.10 Aligned_cols=290 Identities=18% Similarity=0.253 Sum_probs=230.2
Q ss_pred ccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCc
Q psy6452 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFK 307 (594)
Q Consensus 230 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~ 307 (594)
+....+++.++++++.++.+|... .++|++|++++|++++ +++..|..+++|++|+|++|.++.+ | .|..++
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCCcCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 344568999999999999998754 3789999999999665 6677788999999999999999987 4 588999
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC--CCccccCCcc
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL--HKPRCTHTLQ 385 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~~L~ 385 (594)
+|++|++++|.++.+|..+. ++|++|++++|.++.++...|.++++|+.|++++|.++.. ....
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------ 166 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA------ 166 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG------
T ss_pred CCCEEECCCCcCCccChhhc--------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh------
Confidence 99999999999999886542 6899999999999999999999999999999999998752 2211
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
+..+++|+.|++++|. ...+|.. .+++|+.|++++|.+++..+..+..++
T Consensus 167 -----------------~~~l~~L~~L~l~~n~--l~~l~~~-----------~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 167 -----------------FQGMKKLSYIRIADTN--ITTIPQG-----------LPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp -----------------GGGCTTCCEEECCSSC--CCSCCSS-----------CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred -----------------ccCCCCcCEEECCCCc--cccCCcc-----------ccccCCEEECCCCcCCccCHHHhcCCC
Confidence 2345555555555543 1222221 124788888888888888888899999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc-cccC-
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFAN- 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~- 543 (594)
+|+.|++++| ...+..+..+..+++|++|+|++|.|+.+|..+..+++|++|+|++|+|+.++. .|..
T Consensus 217 ~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 217 NLAKLGLSFN----------SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp TCCEEECCSS----------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CCCEEECCCC----------cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 9999999986 333333447788899999999999999999999999999999999999998865 5543
Q ss_pred -----CCCCCEEECcCCCCCc--c-CcccccCCCCcEEEccCCC
Q psy6452 544 -----LKSLKILDVSYNKLTM--L-PDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 544 -----l~~L~~L~Ls~N~l~~--i-p~~l~~l~~L~~L~L~~N~ 579 (594)
...|+.|++++|.+.. + |..|..+.+++.++|++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999983 4 4558899999999999985
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=277.56 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=229.5
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
..+++.++++++.++.+|... .++|++|++++|.+++ +++..|..+++|++|++++|.++.++ .|.++++|+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 457999999999999999755 3789999999999654 66777899999999999999999773 588999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC--CCCccccC-CccEE
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI--LHKPRCTH-TLQTF 387 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~-~L~~L 387 (594)
+|++++|.++.+|..++ .+|++|++++|.++.++...|.++++|+.|++++|.++. +.+..+.. +|+.|
T Consensus 106 ~L~L~~n~l~~l~~~~~--------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp EEECCSSCCCSCCSSCC--------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred EEECCCCcCCccCcccc--------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 99999999999986543 689999999999999999999999999999999999974 33222221 56666
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
++++|.+..+|..+ +++|+.|++++|.+++..+..+..+++|
T Consensus 178 ~l~~n~l~~l~~~~--------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 178 RISEAKLTGIPKDL--------------------------------------PETLNELHLDHNKIQAIELEDLLRYSKL 219 (332)
T ss_dssp BCCSSBCSSCCSSS--------------------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred ECcCCCCCccCccc--------------------------------------cCCCCEEECCCCcCCccCHHHhcCCCCC
Confidence 66666665555432 1366777777777877777888889999
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc-cccC---
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFAN--- 543 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~--- 543 (594)
+.|++++| ...+..|..+..+++|++|+|++|+|+.+|..+..+++|++|++++|+|+.++. .|..
T Consensus 220 ~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 220 YRLGLGHN----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp SCCBCCSS----------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred CEEECCCC----------cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 99999986 333333446788899999999999999999999999999999999999998865 5543
Q ss_pred ---CCCCCEEECcCCCCC--cc-CcccccCCCCcEEEccCCC
Q psy6452 544 ---LKSLKILDVSYNKLT--ML-PDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 544 ---l~~L~~L~Ls~N~l~--~i-p~~l~~l~~L~~L~L~~N~ 579 (594)
..+|+.|++++|.+. .+ |..|..+++|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467999999999998 45 4458899999999999885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=262.86 Aligned_cols=265 Identities=21% Similarity=0.232 Sum_probs=164.9
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
+|++|++++|+|+.+++..|.++++|++|++++|++++ +++..|+.+++|++|++++|.++.+|.-.. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc---cCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEEC
Confidence 45555555555555555445555555555555555332 333444555555555555555555542111 45555555
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCC--CChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES--MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++|.++.+|...+. ..++|+.|++++|.++. +....|..+ +|++|++++|+++.++... .++|+.|++++|
T Consensus 131 ~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n 203 (332)
T 2ft3_A 131 HDNRIRKVPKGVFS-----GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHN 203 (332)
T ss_dssp CSSCCCCCCSGGGS-----SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSS
T ss_pred CCCccCccCHhHhC-----CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCC
Confidence 55555555443221 11455555555555542 444444445 6666777777766655432 256777777777
Q ss_pred CCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.+..++... +..+ ++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 204 ~i~~~~~~~-l~~l----------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 204 KIQAIELED-LLRY----------------------------------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CCCCCCTTS-STTC----------------------------------TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred cCCccCHHH-hcCC----------------------------------CCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 665555322 1233 35555566666666666677888899999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccC------CCCCcEEEccCCCCc--cc-Ccccc
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGN------LICLEKLNISHNKVY--KL-PESFA 542 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~------l~~L~~L~Ls~N~l~--~l-p~~~~ 542 (594)
++| .+..+|..+..+++|++|++++|+|+.++.. |.. ..+|+.|++++|.+. .+ |.+|.
T Consensus 249 ~~N-----------~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 249 DNN-----------KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CSS-----------CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCC-----------cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 985 5568888899999999999999999988654 543 478999999999998 55 45899
Q ss_pred CCCCCCEEECcCCC
Q psy6452 543 NLKSLKILDVSYNK 556 (594)
Q Consensus 543 ~l~~L~~L~Ls~N~ 556 (594)
.+++|+.|++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999999984
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=259.46 Aligned_cols=267 Identities=19% Similarity=0.208 Sum_probs=177.3
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
++++.|+|++|+|+.+++..|.++++|++|+|++|.+++ +.+..|..+++|++|++++|.++.+|.-. .++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEE
Confidence 345566666666666665556666666666666666443 33444556666666666666666555311 15666666
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCC--CChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES--MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
+++|.++.++...+.. .++|+.|++++|.++. +....|.++++|++|++++|.++.++.... ++|++|++++
T Consensus 128 l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~ 201 (330)
T 1xku_A 128 VHENEITKVRKSVFNG-----LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDG 201 (330)
T ss_dssp CCSSCCCBBCHHHHTT-----CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTT
T ss_pred CCCCcccccCHhHhcC-----CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCC
Confidence 6666666655443221 2466666666666653 445566678888888888888877654332 5666666666
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
|.+..++... +.. +++|+.|++++|.+++..+..+..+++|++|+
T Consensus 202 n~l~~~~~~~-~~~----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 202 NKITKVDAAS-LKG----------------------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp SCCCEECTGG-GTT----------------------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CcCCccCHHH-hcC----------------------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 6555443222 123 34566666666677777777788899999999
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccC------CCCCcEEEccCCCCcc--c-Cccc
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGN------LICLEKLNISHNKVYK--L-PESF 541 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~------l~~L~~L~Ls~N~l~~--l-p~~~ 541 (594)
+++| .+..+|..+..+++|++|++++|.|+.++.. |.. ...|+.|++++|.+.. + |..|
T Consensus 247 L~~N-----------~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 247 LNNN-----------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp CCSS-----------CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCC-----------cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 9995 5668888899999999999999999988764 432 4789999999999983 4 4589
Q ss_pred cCCCCCCEEECcCCC
Q psy6452 542 ANLKSLKILDVSYNK 556 (594)
Q Consensus 542 ~~l~~L~~L~Ls~N~ 556 (594)
..+.+++.++|++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 999999999999985
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=280.25 Aligned_cols=264 Identities=22% Similarity=0.259 Sum_probs=172.6
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
+++.+++++|.++.||..+.++|++|+|++|+|+.++.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------------------------------------------ 78 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------------------------------------------ 78 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------------------------------------------
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------------------------------------------
Confidence 35678888888888887777788888888888876651
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
.+++|++|+|++|+|+.++. .+++|++|++++|.++++ +. .+++|+.|++++|+++.+|.. +++|+
T Consensus 79 -~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l---~~----~l~~L~~L~L~~N~l~~lp~~--l~~L~ 144 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL---PA----LPSGLCKLWIFGNQLTSLPVL--PPGLQ 144 (622)
T ss_dssp -CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCC---CC----CCTTCCEEECCSSCCSCCCCC--CTTCC
T ss_pred -cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCC---CC----CCCCcCEEECCCCCCCcCCCC--CCCCC
Confidence 14678888888888887776 567888888888886653 32 457788888888888877753 47788
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|. .+.+|+.|++++|.++.++ ..+++|+.|++++|.|++++. ..++|+.|+++
T Consensus 145 ~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~ 209 (622)
T 3g06_A 145 ELSVSDNQLASLPA---------LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT--LPSELYKLWAY 209 (622)
T ss_dssp EEECCSSCCSCCCC---------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECC
T ss_pred EEECcCCcCCCcCC---------ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC--ccchhhEEECc
Confidence 88888888777663 2256777777777777766 245667777777777665442 12334444444
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+|.+..+|. .+++|+.|
T Consensus 210 ~N~l~~l~~---------------------------------------------------------------~~~~L~~L 226 (622)
T 3g06_A 210 NNRLTSLPA---------------------------------------------------------------LPSGLKEL 226 (622)
T ss_dssp SSCCSSCCC---------------------------------------------------------------CCTTCCEE
T ss_pred CCcccccCC---------------------------------------------------------------CCCCCCEE
Confidence 433333221 01333444
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
++++| .+..+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|++|+|+.+|..+..+++|+.|
T Consensus 227 ~Ls~N-----------~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 227 IVSGN-----------RLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp ECCSS-----------CCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred EccCC-----------ccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 44442 222233 224567777777777777766 5577777777777777777777777777777
Q ss_pred ECcCCCCCc-cCcccc
Q psy6452 551 DVSYNKLTM-LPDGFV 565 (594)
Q Consensus 551 ~Ls~N~l~~-ip~~l~ 565 (594)
+|++|+|+. +|..+.
T Consensus 290 ~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 290 NLEGNPLSERTLQALR 305 (622)
T ss_dssp ECCSCCCCHHHHHHHH
T ss_pred EecCCCCCCcCHHHHH
Confidence 777777773 344343
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-32 Score=290.93 Aligned_cols=341 Identities=15% Similarity=0.081 Sum_probs=201.7
Q ss_pred CCCcccEEEccCCCCcccc----hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCC----CCCEEEcCCCCCCC----
Q psy6452 232 QYHDIFTVNLSHQDINFVQ----ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT----NLIVLDLSHNKLSE---- 299 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~----~L~~L~Ls~N~l~~---- 299 (594)
.+++|++|+|++|+++... +..+..+++|++|+|++|.+++. .+..++..++ +|++|+|++|.++.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV--GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH--HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH--HHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 3567778888888777432 33456677788888888775431 1223334454 68888888887773
Q ss_pred -CC-CcCCCcCccEEeccCCccccCc-hhhhhccccccCCCcceEEcCCCCCCCCC----hhhhccCCCCcEEECCCCCC
Q psy6452 300 -LP-DFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMP----LCLQVHFCKLVKLDISHNQI 372 (594)
Q Consensus 300 -lp-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l 372 (594)
++ .+..+++|++|++++|.++... ..+.... .....+|++|++++|.++... ...+..+++|++|++++|.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL-LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH-TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHH-hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 23 3667777888888888776422 1111111 111246778888888777543 33345567788888888777
Q ss_pred CCCCCccc-------cCCccEEeCCCCCCCCC-----CchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc
Q psy6452 373 KILHKPRC-------THTLQTFSMNHNIGMKI-----PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440 (594)
Q Consensus 373 ~~l~~~~~-------~~~L~~L~L~~N~~~~i-----p~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~ 440 (594)
+......+ .++|++|++++|.+... +.. +..+++|+.|++++|. +.+.-...+.. .....+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~-l~~~~~~~l~~----~~~~~~ 255 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI--VASKASLRELALGSNK-LGDVGMAELCP----GLLHPS 255 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH--HHHCTTCCEEECCSSB-CHHHHHHHHHH----HHTSTT
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH--HHhCCCccEEeccCCc-CChHHHHHHHH----HHhcCC
Confidence 65332222 23777888887766653 332 2567778888887763 21111000000 011235
Q ss_pred CCCcEEEcCCcccccc----CccccccCCCcceEeCCCCcCcccccccccccccCccccc-CCCCCcEEeCccccCcc--
Q psy6452 441 SNLISLHMQNTAAVMS----NVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC-- 513 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~-~l~~L~~L~Ls~N~l~~-- 513 (594)
++|++|++++|.++.. .+..+..+++|++|++++|.+..... ..+...+. ..++|++|+|++|.++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA------RLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH------HHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH------HHHHHHhccCCccceeeEcCCCCCchHH
Confidence 6777888887777664 34455567777888887763321110 01111111 22477777777777763
Q ss_pred ---ccccccCCCCCcEEEccCCCCccc-Ccc----ccC-CCCCCEEECcCCCCC-----ccCcccccCCCCcEEEccCCC
Q psy6452 514 ---IPEDIGNLICLEKLNISHNKVYKL-PES----FAN-LKSLKILDVSYNKLT-----MLPDGFVMLSNLTTFYAQRKY 579 (594)
Q Consensus 514 ---ip~~~~~l~~L~~L~Ls~N~l~~l-p~~----~~~-l~~L~~L~Ls~N~l~-----~ip~~l~~l~~L~~L~L~~N~ 579 (594)
++..+..+++|++|+|++|+++.. +.. +.. .++|++|+|++|+|+ .+|..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 455566677777777777777633 122 221 567777777777777 466667777777777777777
Q ss_pred CcccCHhHH
Q psy6452 580 WMFLTISLL 588 (594)
Q Consensus 580 l~~l~~~~~ 588 (594)
++......+
T Consensus 410 i~~~~~~~l 418 (461)
T 1z7x_W 410 LGDAGILQL 418 (461)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 765544333
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=275.28 Aligned_cols=386 Identities=15% Similarity=0.080 Sum_probs=253.4
Q ss_pred CccEEecCCCCCcccChhh----hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI----LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~----l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.++.++++++.++..+... +++|++|+|++|.+++.... .+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-----------------------------------~l 48 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-----------------------------------DI 48 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH-----------------------------------HH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH-----------------------------------HH
Confidence 4568888888887666432 77899999999988753210 11
Q ss_pred ccCccCCCcccEEEccCCCCcccch-HhhhcCC----CCCEEECCCCCCCCcc--ccchhhhhcCCCCCEEEcCCCCCCC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQE-SMSQKLT----NLTVLDLSHNNHQDIN--FVQESMSQKLTNLIVLDLSHNKLSE 299 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~----~L~~L~Ls~N~l~~i~--~l~~~~~~~l~~L~~L~Ls~N~l~~ 299 (594)
+..+..+++|++|+|++|.++.... ..+..++ +|++|+|++|.+++.. .+ +..+..+++|++|+|++|.++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH-HHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH-HHHHccCCceeEEECCCCcCch
Confidence 2223446778888888888876443 3334455 6888888888865321 22 3445678888888888888763
Q ss_pred C--CC-----cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhc-----cCCCCcEEEC
Q psy6452 300 L--PD-----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV-----HFCKLVKLDI 367 (594)
Q Consensus 300 l--p~-----~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~-----~l~~L~~L~L 367 (594)
. .. +...++|++|++++|+++.......... +...++|++|++++|.++......+. ..++|++|++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 2 11 2235678888888888775321111000 11125788888888887754333222 3568888888
Q ss_pred CCCCCCCCCCc------cccCCccEEeCCCCCCCCCC-----chhhhcccCcccEEECcCCCCccCC----ccHHHhhhc
Q psy6452 368 SHNQIKILHKP------RCTHTLQTFSMNHNIGMKIP-----EWFWYQEFLCLKELNMSSTDPFFEH----LPIWLLNHM 432 (594)
Q Consensus 368 s~N~l~~l~~~------~~~~~L~~L~L~~N~~~~ip-----~~~~~~~~~~L~~L~Ls~n~~~~~~----lp~~~~~~~ 432 (594)
++|.++..... ...++|++|++++|.++... ..+ +..+++|+.|++++|. +.+. ++..
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~----- 279 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL-LHPSSRLRTLWIWECG-ITAKGCGDLCRV----- 279 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH-TSTTCCCCEEECTTSC-CCHHHHHHHHHH-----
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH-hcCCCCceEEECcCCC-CCHHHHHHHHHH-----
Confidence 88887763211 22457888888888665432 111 2357889999998874 2221 2322
Q ss_pred ccccccccCCCcEEEcCCccccccCcccccc-----CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCc
Q psy6452 433 ELKENGVFSNLISLHMQNTAAVMSNVSQLKY-----LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS 507 (594)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls 507 (594)
+..+++|++|++++|.++...+..+.. .++|+.|++++|.+... ....++..+..+++|++|+|+
T Consensus 280 ----l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 280 ----LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp ----HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------GHHHHHHHHHHCSSCCEEECC
T ss_pred ----HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------HHHHHHHHHhhCCCccEEEcc
Confidence 233678999999999887665555543 36899999999743321 112356677788999999999
Q ss_pred cccCccc-cc----cccC-CCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCCcc-----Cccc-ccCCCC
Q psy6452 508 NVQLNCI-PE----DIGN-LICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLTML-----PDGF-VMLSNL 570 (594)
Q Consensus 508 ~N~l~~i-p~----~~~~-l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~i-----p~~l-~~l~~L 570 (594)
+|.|+.. +. .+.. .++|++|+|++|+++ .+|..+..+++|++|+|++|+|+.. .+.+ ....+|
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L 429 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 429 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcch
Confidence 9999843 22 2332 689999999999999 6788888899999999999999832 2222 234579
Q ss_pred cEEEccCCCCcccCHhHHhh
Q psy6452 571 TTFYAQRKYWMFLTISLLCY 590 (594)
Q Consensus 571 ~~L~L~~N~l~~l~~~~~~~ 590 (594)
+.|.+.++.+.......+..
T Consensus 430 ~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 430 EQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CEEECTTCCCCHHHHHHHHH
T ss_pred hheeecccccCHHHHHHHHH
Confidence 99999998887665555443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=256.47 Aligned_cols=241 Identities=22% Similarity=0.288 Sum_probs=163.9
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++..++.++.||..+.++++.|+|++|+|+++.+ ..|.++
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~---------------------------------------~~~~~l 87 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV---------------------------------------NSFKHL 87 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT---------------------------------------TTTSSC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH---------------------------------------HHhhCC
Confidence 44556778889998888889999999999887651 223456
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+++. ++...|..+++|++|+|++|.++.++. |..+++|++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT---IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS---CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe---eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 788888888888888887778888888888888888554 566667777888888888887776663 666777777
Q ss_pred EeccCC-ccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 312 LDISHN-NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 312 L~Ls~N-~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
|++++| .++.+ +...|.++++|++|++++|.++.++.
T Consensus 165 L~l~~~~~l~~i-----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~------------- 202 (440)
T 3zyj_A 165 LDLGELKRLSYI-----------------------------SEGAFEGLSNLRYLNLAMCNLREIPN------------- 202 (440)
T ss_dssp EECCCCTTCCEE-----------------------------CTTTTTTCSSCCEEECTTSCCSSCCC-------------
T ss_pred eCCCCCCCccee-----------------------------CcchhhcccccCeecCCCCcCccccc-------------
Confidence 777663 33333 33344566777777777777664321
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
+..+++|+.|++++ |.+++.
T Consensus 203 ------------~~~l~~L~~L~Ls~----------------------------------N~l~~~-------------- 222 (440)
T 3zyj_A 203 ------------LTPLIKLDELDLSG----------------------------------NHLSAI-------------- 222 (440)
T ss_dssp ------------CTTCSSCCEEECTT----------------------------------SCCCEE--------------
T ss_pred ------------cCCCcccCEEECCC----------------------------------CccCcc--------------
Confidence 11222222222222 222221
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCCCCCC
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANLKSLK 548 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~ 548 (594)
.|..+..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|+|+.+|. .|..+++|+
T Consensus 223 --------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 223 --------------------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp --------------------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred --------------------ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 13344456677788888888886644 47788888888888888887765 567788888
Q ss_pred EEECcCCCCC
Q psy6452 549 ILDVSYNKLT 558 (594)
Q Consensus 549 ~L~Ls~N~l~ 558 (594)
.|+|++|.+.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 8888888776
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=254.73 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=137.0
Q ss_pred EecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 155 RTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 155 l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+.+++.++.||....++|++|++++|+++++++ ..+.+++
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~---------------------------------------~~~~~l~ 76 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN---------------------------------------SDLQRCV 76 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT---------------------------------------TTTTTCT
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCH---------------------------------------HHhccCC
Confidence 4567889999999888899999999999998652 1234578
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC---cCCCcCccE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLNFKVLKE 311 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~l~~L~~ 311 (594)
+|++|++++|+|+.+++..|.++++|++|++++|++++ ++...|+.+++|++|++++|+++.+|. |..+++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN---LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS---CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc---CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 99999999999999988889999999999999999665 677778899999999999999998875 778999999
Q ss_pred EeccCC-ccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHN-NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N-~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|++++| .++.++...+. ..++|++|++++|.++++.+..|..+++|++|++++|.++.
T Consensus 154 L~l~~n~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EEEEESSSCCEECTTTTT-----TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred EECCCCccccccCHHHcc-----CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999998 47766543221 12567777777777776666666666677777777666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=249.99 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=201.1
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
.+++.++++.+.+...+...+..+++|++|+|++|.+++ +++..|..+++|++|+|++|.++.+++|..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEE
Confidence 457778889999988888888888999999999999665 56677889999999999999999777788999999999
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.+++++.. ++|++|++++|.++.++... +++|++|++++|+++++.+..
T Consensus 87 Ls~n~l~~l~~~----------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~-------------- 139 (317)
T 3o53_A 87 LNNNYVQELLVG----------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLD-------------- 139 (317)
T ss_dssp CCSSEEEEEEEC----------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBC--------------
T ss_pred CcCCccccccCC----------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchh--------------
Confidence 999999886621 46777777777766655432 455666666666665432211
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCcccc-ccCCCcceEeC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL-KYLKNIKYLNC 472 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L 472 (594)
+..++ +|++|++++|.+++..+..+ ..+++|++|++
T Consensus 140 ---------~~~l~----------------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 140 ---------EGCRS----------------------------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp ---------TGGGS----------------------------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred ---------hhccC----------------------------------CCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 12333 55555555566666656655 47889999999
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEEC
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDV 552 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 552 (594)
++|. +..+|. ...+++|++|+|++|+|+.+|..+..+++|++|+|++|+|+.+|..+..+++|+.|++
T Consensus 177 ~~N~-----------l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 177 QYNF-----------IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp TTSC-----------CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCCc-----------Cccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 9963 334432 2347899999999999999988888999999999999999999888888999999999
Q ss_pred cCCCCC--ccCcccccCCCCcEEEccCC
Q psy6452 553 SYNKLT--MLPDGFVMLSNLTTFYAQRK 578 (594)
Q Consensus 553 s~N~l~--~ip~~l~~l~~L~~L~L~~N 578 (594)
++|+++ .+|..+..+++|+.|+++++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 999998 66777888899999888843
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-28 Score=251.19 Aligned_cols=273 Identities=19% Similarity=0.218 Sum_probs=189.0
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
+.....++++++++.+|...+ ++|++|++++|.+++ ++...|..+++|++|++++|.++.++ .|.++++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 444558889999999987554 588999999999554 66667788999999999999988764 4888888899
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCC-CCCCCCccccCCccEEeC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQ-IKILHKPRCTHTLQTFSM 389 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~L 389 (594)
|++++|+++++|...+.. .++|++|++++|+++.++. ..|.++++|++|++++|. ++.+.+..
T Consensus 105 L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---------- 169 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKP-----LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD---------- 169 (353)
T ss_dssp EECCSSCCSSCCHHHHTT-----CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----------
T ss_pred EECCCCcCCcCCHhHhCC-----CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH----------
Confidence 988888888877653321 2466777777777766665 555666666666666663 44332111
Q ss_pred CCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcce
Q psy6452 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469 (594)
Q Consensus 390 ~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 469 (594)
+..++ +|+.|++++|.+++..+..+..+++|++
T Consensus 170 -------------~~~l~----------------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 170 -------------FAGLT----------------------------------FLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp -------------TTTCC----------------------------------EEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred -------------ccCCC----------------------------------CCCEEECCCCCcCccCHHHHhccccCCe
Confidence 12333 4444555555555555666777777777
Q ss_pred EeCCCCcCcccccccccccccCcccc-cCCCCCcEEeCccccCcccccc----ccCCCCCcEEEccCCCCc-----ccCc
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSI-LYLSSIQELHLSNVQLNCIPED----IGNLICLEKLNISHNKVY-----KLPE 539 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~----~~~l~~L~~L~Ls~N~l~-----~lp~ 539 (594)
|++++| .++.+|..+ ..+++|+.|++++|.++.++.. ......++.++|+++.++ .+|.
T Consensus 203 L~l~~n-----------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 203 LILHMK-----------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp EEEECS-----------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ecCCCC-----------ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 777774 234444433 3467788888888887755321 234567778888888776 4667
Q ss_pred cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 540 SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 540 ~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++..+++|++|+|++|+|+.+|.. |..+++|++|++++|+++.-.+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 778888888888888888888877 5788888888888888876543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=244.17 Aligned_cols=250 Identities=22% Similarity=0.273 Sum_probs=172.4
Q ss_pred CcccEEEccCCCCcc--cchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCC-CCC-CcCCCcC
Q psy6452 234 HDIFTVNLSHQDINF--VQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELP-DFLNFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~--l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~l~~ 308 (594)
.+++.|+|++|.++. ..+..|.++++|++|++++ |.+++ .+| ..+..+++|++|+|++|.++ .+| .|..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 567888888888775 3334567777788888874 76543 233 33467777777777777776 555 3666777
Q ss_pred ccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 309 LKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 309 L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
|++|++++|.+++ +|.. |..+++|++|++++|++++.
T Consensus 127 L~~L~Ls~N~l~~~~p~~------------------------------~~~l~~L~~L~L~~N~l~~~------------ 164 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPS------------------------------ISSLPNLVGITFDGNRISGA------------ 164 (313)
T ss_dssp CCEEECCSSEEESCCCGG------------------------------GGGCTTCCEEECCSSCCEEE------------
T ss_pred CCEEeCCCCccCCcCChH------------------------------HhcCCCCCeEECcCCcccCc------------
Confidence 7777777777663 4432 23566666777766666531
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
+|..+ ..++ ++|+.|++++|.+++..+..+..++ |
T Consensus 165 ---------~p~~l--~~l~---------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 165 ---------IPDSY--GSFS---------------------------------KLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ---------CCGGG--GCCC---------------------------------TTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred ---------CCHHH--hhhh---------------------------------hcCcEEECcCCeeeccCChHHhCCc-c
Confidence 12211 1111 1445555555555555566666665 7
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc-ccCccccCCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY-KLPESFANLKS 546 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 546 (594)
+.|++++| ...+..|..+..+++|+.|+|++|.++..+..+..+++|++|+|++|+|+ .+|.++..+++
T Consensus 200 ~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 200 AFVDLSRN----------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp SEEECCSS----------EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred cEEECcCC----------cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 77777776 44455667777888888888888888866555888899999999999998 67888999999
Q ss_pred CCEEECcCCCCC-ccCcccccCCCCcEEEccCCC-CcccC
Q psy6452 547 LKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKY-WMFLT 584 (594)
Q Consensus 547 L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~~l~ 584 (594)
|++|+|++|+|+ .+|.. ..+++|+.+++++|+ +...|
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999998 67765 788999999999998 44433
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=250.52 Aligned_cols=245 Identities=18% Similarity=0.165 Sum_probs=197.5
Q ss_pred CccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcC
Q psy6452 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKV 308 (594)
Q Consensus 229 ~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~ 308 (594)
.+..+++|++|+|++|+|+.+++..|..+++|++|+|++|.+++ +++ +..+++|++|++++|.++.++. .++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~--~~~l~~L~~L~Ls~n~l~~l~~---~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELLV---GPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---EEE--ETTCTTCCEEECCSSEEEEEEE---CTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---chh--hhhcCCCCEEECcCCccccccC---CCC
Confidence 34456799999999999999999999999999999999999765 333 6899999999999999987763 389
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEe
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~ 388 (594)
|++|++++|.+++++... .++|++|++++|+++.++...|..+++|++|++++|.++++.+..+.
T Consensus 101 L~~L~l~~n~l~~~~~~~--------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------- 165 (317)
T 3o53_A 101 IETLHAANNNISRVSCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------- 165 (317)
T ss_dssp CCEEECCSSCCSEEEECC--------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------
T ss_pred cCEEECCCCccCCcCccc--------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------
Confidence 999999999999876432 26899999999999999998888999999999999999875433221
Q ss_pred CCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcc
Q psy6452 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468 (594)
Q Consensus 389 L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 468 (594)
..+++|+.|++++| .++.. .....+++|+
T Consensus 166 ---------------~~l~~L~~L~L~~N----------------------------------~l~~~--~~~~~l~~L~ 194 (317)
T 3o53_A 166 ---------------ASSDTLEHLNLQYN----------------------------------FIYDV--KGQVVFAKLK 194 (317)
T ss_dssp ---------------GGTTTCCEEECTTS----------------------------------CCCEE--ECCCCCTTCC
T ss_pred ---------------hccCcCCEEECCCC----------------------------------cCccc--ccccccccCC
Confidence 23344444444443 23222 1122366777
Q ss_pred eEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc--ccCccccCCCC
Q psy6452 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY--KLPESFANLKS 546 (594)
Q Consensus 469 ~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~ 546 (594)
+|++++| .+..+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus 195 ~L~Ls~N-----------~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 195 TLDLSSN-----------KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp EEECCSS-----------CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred EEECCCC-----------cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 7777774 4555666788889999999999999999999999999999999999999 66778899999
Q ss_pred CCEEECcCC-CCC
Q psy6452 547 LKILDVSYN-KLT 558 (594)
Q Consensus 547 L~~L~Ls~N-~l~ 558 (594)
|+.|++++| .++
T Consensus 264 L~~l~l~~~~~l~ 276 (317)
T 3o53_A 264 VQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEECCCchhcc
Confidence 999999954 444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=236.63 Aligned_cols=245 Identities=21% Similarity=0.303 Sum_probs=166.0
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC----CccccCCcc
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH----KPRCTHTLQ 385 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~~~L~ 385 (594)
+.++++++.++.+|.. +++++++|++++|.++.++..+|.++++|++|++++|.++.+. .....++|+
T Consensus 10 ~~l~c~~~~l~~ip~~--------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG--------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSC--------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCC--------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 3445555555555432 2245555555555555555555555555555555555555431 011234555
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
+|++++|.+..+|..+ ..+++|+.|++++|+ + ..++. ...+..+++|++|++++|.+.+..+..+..++
T Consensus 82 ~L~Ls~n~i~~l~~~~--~~l~~L~~L~l~~n~-l-~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 82 YLDLSFNGVITMSSNF--LGLEQLEHLDFQHSN-L-KQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp EEECCSCSEEEEEEEE--ETCTTCCEEECTTSE-E-ESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred EEECCCCccccChhhc--CCCCCCCEEECCCCc-c-ccccc-------chhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 6666665555555543 566777777777753 1 11111 12344567888888888888888888888889
Q ss_pred CcceEeCCCCcCcccccccccccc-cCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-ccc
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFA 542 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~-~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~ 542 (594)
+|++|++++| ...+ .+|..+..+++|++|+|++|.|+.+ |..+..+++|++|+|++|+++.++. .+.
T Consensus 151 ~L~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 151 SLEVLKMAGN----------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TCCEEECTTC----------EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred CCCEEECCCC----------ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 9999999986 3333 4677888889999999999999977 5568889999999999999998865 788
Q ss_pred CCCCCCEEECcCCCCCcc-CcccccCC-CCcEEEccCCCCccc
Q psy6452 543 NLKSLKILDVSYNKLTML-PDGFVMLS-NLTTFYAQRKYWMFL 583 (594)
Q Consensus 543 ~l~~L~~L~Ls~N~l~~i-p~~l~~l~-~L~~L~L~~N~l~~l 583 (594)
.+++|++|+|++|+|+.+ |..+..++ +|++|+|++|+++.-
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 889999999999999854 55677774 899999999998764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=240.76 Aligned_cols=272 Identities=21% Similarity=0.231 Sum_probs=179.6
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC---C-CcCCCcCccE
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL---P-DFLNFKVLKE 311 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l---p-~~~~l~~L~~ 311 (594)
-+.++++++.++.+|...+ ++|++|++++|+++. ++..+|..+++|++|+|++|.++.+ + .+..+++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCEEEcCCCCcccCCCCCC---CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 3578888888888887443 678888888888554 6677778888888888888888754 2 4557788888
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
|++++|.++.+|..+.. .++|++|++++|.++.++. ..|..+++|++|++++|.++++.+..
T Consensus 83 L~Ls~n~i~~l~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------- 145 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLG------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI----------- 145 (306)
T ss_dssp EECCSCSEEEEEEEEET------CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-----------
T ss_pred EECCCCccccChhhcCC------CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-----------
Confidence 88888888877654321 2567777777777766654 45566777777777777665432211
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccc-cCccccccCCCcce
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM-SNVSQLKYLKNIKY 469 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 469 (594)
+..++ +|+.|++++|.+++ ..+..+..+++|++
T Consensus 146 ------------~~~l~----------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 146 ------------FNGLS----------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp ------------TTTCT----------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred ------------cccCc----------------------------------CCCEEECCCCccccccchhHHhhCcCCCE
Confidence 12333 44444444455544 34556667777777
Q ss_pred EeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCccc-CccccCC-CC
Q psy6452 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL-PESFANL-KS 546 (594)
Q Consensus 470 L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~ 546 (594)
|++++| ...+..|..+..+++|++|+|++|.++.++. .+..+++|++|+|++|+++.+ |..+..+ ++
T Consensus 180 L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 180 LDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp EECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred EECCCC----------CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 777775 2333335667777888888888888887765 477888888888888888865 4467777 48
Q ss_pred CCEEECcCCCCCccCc---ccccCCCCcEEEccCCCCcccCHh
Q psy6452 547 LKILDVSYNKLTMLPD---GFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 547 L~~L~Ls~N~l~~ip~---~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
|++|+|++|+++.-.. ....+...+.+.+..+.+..-.+.
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 8888888888873211 122334444455555555543333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=250.50 Aligned_cols=269 Identities=25% Similarity=0.247 Sum_probs=218.2
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
.+++.|++++|.|+.+|...+ ++|++|+|++|.|+. +|. .+++|++|+|++|+|+.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC---CCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC---CCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEE
Confidence 358999999999999987654 799999999999765 443 57899999999999999987 779999999
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.++++|. .+.+|+.|++++|+++.+|.. +++|++|++++|.+++++. ..++|+.|++++|.
T Consensus 108 Ls~N~l~~l~~---------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 108 IFSNPLTHLPA---------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ 172 (622)
T ss_dssp ECSCCCCCCCC---------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC
T ss_pred CcCCcCCCCCC---------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCC
Confidence 99999999875 236899999999999988863 4789999999999988753 44678888888887
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
+..+|. .+++|+.|++++ |.+++... .+++|+.|+++
T Consensus 173 l~~l~~-----~~~~L~~L~Ls~----------------------------------N~l~~l~~----~~~~L~~L~L~ 209 (622)
T 3g06_A 173 LTSLPM-----LPSGLQELSVSD----------------------------------NQLASLPT----LPSELYKLWAY 209 (622)
T ss_dssp CSCCCC-----CCTTCCEEECCS----------------------------------SCCSCCCC----CCTTCCEEECC
T ss_pred CCCCcc-----cCCCCcEEECCC----------------------------------CCCCCCCC----ccchhhEEECc
Confidence 777662 234455555554 44443221 24678888888
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECc
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVS 553 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 553 (594)
+| .+..+|.. +++|+.|+|++|+|+.+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|+
T Consensus 210 ~N-----------~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 210 NN-----------RLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp SS-----------CCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CC-----------cccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCC
Confidence 85 44556643 478999999999999998 466899999999999999987 67899999999
Q ss_pred CCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhhh
Q psy6452 554 YNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLM 592 (594)
Q Consensus 554 ~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 592 (594)
+|+|+.||..+..+++|+.|+|++|+++...+..+..+.
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999999999999999999998888776654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=242.01 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=111.8
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+++++.||..+.+++++|+|++|+|+++. +..|.++
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~---------------------------------------~~~~~~l 98 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ---------------------------------------ADTFRHL 98 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC---------------------------------------TTTTTTC
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceEC---------------------------------------HHHcCCC
Confidence 4556677888899888888999999999888765 1233557
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+++. +++..|..+++|++|+|++|.++.++ .|..+++|++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB---CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc---cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 788888888888888888888888888888888888554 66777778888888888888888776 3677778888
Q ss_pred EeccC-CccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 312 LDISH-NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 312 L~Ls~-N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
|++++ |.++.++. ..|.++++|++|++++|++++++
T Consensus 176 L~l~~~~~l~~i~~-----------------------------~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 176 LDLGELKKLEYISE-----------------------------GAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp EECCCCTTCCEECT-----------------------------TTTTTCTTCCEEECTTSCCSSCC
T ss_pred EeCCCCCCccccCh-----------------------------hhccCCCCCCEEECCCCcccccc
Confidence 88777 34444443 33445666666666666666543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=240.05 Aligned_cols=245 Identities=20% Similarity=0.263 Sum_probs=172.3
Q ss_pred CCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEE
Q psy6452 286 NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365 (594)
Q Consensus 286 ~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 365 (594)
....++.+++.++.+|.-. .++|++|+|++|.++.++...+. ..++|+.|+|++|.++.++...|.++++|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFR-----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcC-----CCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 4567777777777777311 25777888888887776543322 12577777777777777777777777777777
Q ss_pred ECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCC
Q psy6452 366 DISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNL 443 (594)
Q Consensus 366 ~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L 443 (594)
+|++|+++.++...+ .++|++|++++|.+..++... +..+++|+.|++++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~~~------------------------- 182 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGELK------------------------- 182 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCT-------------------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH-HhcCCcccEEeCCCCC-------------------------
Confidence 777777777665433 346667777766666666544 3555555555555532
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLI 522 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~ 522 (594)
.+.......|..+++|++|++++| .+..+| .+..+++|++|+|++|.|+.+ |..|.+++
T Consensus 183 --------~l~~i~~~~~~~l~~L~~L~L~~n-----------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 183 --------KLEYISEGAFEGLFNLKYLNLGMC-----------NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp --------TCCEECTTTTTTCTTCCEEECTTS-----------CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred --------CccccChhhccCCCCCCEEECCCC-----------cccccc-cccccccccEEECcCCcCcccCcccccCcc
Confidence 333334456777778888888875 334444 466778888888888888866 45588888
Q ss_pred CCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 523 CLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+|+.|+|++|+++.+ +..|..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+|..
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 888888888888877 44788888888888888888877665 7788888888888888764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=245.68 Aligned_cols=234 Identities=19% Similarity=0.220 Sum_probs=174.0
Q ss_pred CCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCC
Q psy6452 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYK 337 (594)
Q Consensus 258 ~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~ 337 (594)
++|++|+|++|.+++ +++..|..+++|++|+|++|.++++++|..+++|++|+|++|.|+++|.. ++
T Consensus 34 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----------~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----------PS 100 (487)
T ss_dssp GGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----------TT
T ss_pred CCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----------CC
Confidence 378888888888655 55666788888888888888888666688888888888888888876531 46
Q ss_pred cceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 338 HSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 338 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
|+.|++++|.++.++.. .+++|+.|++++|.++++.+.. +..
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~------------ 142 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-----------------------EGC------------ 142 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-----------------------GGG------------
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-----------------------hcC------------
Confidence 66666666666665543 2456666666666666532211 122
Q ss_pred CCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc-cCCCcceEeCCCCcCcccccccccccccCccccc
Q psy6452 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK-YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496 (594)
Q Consensus 418 ~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~ 496 (594)
+++|+.|++++|.+++..+..+. .+++|+.|++++|. +..+|. ..
T Consensus 143 ----------------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-----------l~~~~~-~~ 188 (487)
T 3oja_A 143 ----------------------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-----------IYDVKG-QV 188 (487)
T ss_dssp ----------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-----------CCEEEC-CC
T ss_pred ----------------------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-----------cccccc-cc
Confidence 23566666666677776677765 78899999999863 333332 33
Q ss_pred CCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCC--ccCcccccCCCCcEEE
Q psy6452 497 YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFY 574 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~ 574 (594)
.+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 57889999999999998888888889999999999999998888888899999999999988 6677788888888888
Q ss_pred cc
Q psy6452 575 AQ 576 (594)
Q Consensus 575 L~ 576 (594)
++
T Consensus 269 ~~ 270 (487)
T 3oja_A 269 KQ 270 (487)
T ss_dssp HH
T ss_pred cc
Confidence 86
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=224.70 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=181.6
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.||...+++|++|+|++|+++++++ ..|..+
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~---------------------------------------~~~~~~ 55 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPA---------------------------------------ASFRAC 55 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECT---------------------------------------TTTTTC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCH---------------------------------------HHcccC
Confidence 66778889999998888999999999999998662 223557
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
++|++|++++|.++.+.+..|.++++|++|++++|. ++. +++..+..+++|++|++++|.++.++ .|.++++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS---VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc---cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 899999999999999988889999999999999997 655 55667789999999999999999875 378899999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEe
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~ 388 (594)
+|++++|.++.++...+. ..++|++|++++|+++.++...|.++++|++|++++|.++++.+..+ .++|+.|+
T Consensus 133 ~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccCHhHhc-----cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 999999999988765432 23689999999999999998888899999999999999998765543 35888888
Q ss_pred CCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 389 L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+++|.+..++... +..+++|+.|++++|.
T Consensus 208 l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 208 LFANNLSALPTEA-LAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHH-cccCcccCEEeccCCC
Confidence 8888888887654 4677888888888875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=249.57 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=193.7
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
..+++|++|+|++|.|+.+++..|..+++|++|+|++|.+++ +++ +..+++|++|+|++|.|+.++.. ++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD--LESLSTLRTLDLNNNYVQELLVG---PSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE---EEE--CTTCTTCCEEECCSSEEEEEEEC---TTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC---Ccc--cccCCCCCEEEecCCcCCCCCCC---CCcC
Confidence 345689999999999999999899999999999999999765 333 68999999999999999987643 8999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.+++++... .++|+.|++++|.++++++..|.++++|+.|+|++|.++++.+..+.
T Consensus 103 ~L~L~~N~l~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------- 165 (487)
T 3oja_A 103 TLHAANNNISRVSCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165 (487)
T ss_dssp EEECCSSCCCCEEECC--------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---------
T ss_pred EEECcCCcCCCCCccc--------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---------
Confidence 9999999999976432 26899999999999999888888999999999999999875432221
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceE
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 470 (594)
..+++|+.|++++| .+++. ..+..+++|+.|
T Consensus 166 -------------~~l~~L~~L~Ls~N----------------------------------~l~~~--~~~~~l~~L~~L 196 (487)
T 3oja_A 166 -------------ASSDTLEHLNLQYN----------------------------------FIYDV--KGQVVFAKLKTL 196 (487)
T ss_dssp -------------GGTTTCCEEECTTS----------------------------------CCCEE--ECCCCCTTCCEE
T ss_pred -------------hhCCcccEEecCCC----------------------------------ccccc--cccccCCCCCEE
Confidence 23444444444443 33333 122346777788
Q ss_pred eCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc--ccCccccCCCCCC
Q psy6452 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY--KLPESFANLKSLK 548 (594)
Q Consensus 471 ~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~ 548 (594)
++++| .+..+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.+. .+|.++..++.|+
T Consensus 197 ~Ls~N-----------~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 197 DLSSN-----------KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp ECCSS-----------CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred ECCCC-----------CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 88874 4455666788899999999999999999999999999999999999999 6777888899999
Q ss_pred EEECc
Q psy6452 549 ILDVS 553 (594)
Q Consensus 549 ~L~Ls 553 (594)
.++++
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 99886
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=229.51 Aligned_cols=240 Identities=20% Similarity=0.179 Sum_probs=174.8
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCcc
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ 385 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~ 385 (594)
.+++++|+|++|.++.+|..++.. ++|++|++++|.++.+|..+ .++++|++|++++|.++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l------~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~------------ 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRL------SHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLR------------ 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGG------TTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCC------------
T ss_pred ccceeEEEccCCCchhcChhhhhC------CCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccc------------
Confidence 356667777777776666554432 45666666666666555432 45666666666666655
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 465 (594)
.+|..+ ..+++|+.|++++|+ ..+.+|..+........+..+++|++|++++|.++ ..|..+..++
T Consensus 141 ----------~lp~~l--~~l~~L~~L~L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 141 ----------ALPASI--ASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp ----------CCCGGG--GGCTTCCEEEEEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred ----------cCcHHH--hcCcCCCEEECCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 444433 566677777777653 45556554433222233456789999999999998 5677799999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccC
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFAN 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 543 (594)
+|++|++++| .+..+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++. .+|..+..
T Consensus 207 ~L~~L~L~~N-----------~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 207 NLKSLKIRNS-----------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp TCCEEEEESS-----------CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred CCCEEEccCC-----------CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 9999999995 45568888999999999999998776 77888999999999999998766 67889999
Q ss_pred CCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCcccCHhHHh
Q psy6452 544 LKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWMFLTISLLC 589 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~ 589 (594)
+++|++|+|++|++. .+|..+..+++|+.+++..|.+..++.....
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~~ 322 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-------
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhcc
Confidence 999999999998776 8999999999999999999998888765443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=236.94 Aligned_cols=259 Identities=15% Similarity=0.084 Sum_probs=177.9
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhh------hcCCCCCEEEcCCCCCC-CCCC-
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS------QKLTNLIVLDLSHNKLS-ELPD- 302 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~------~~l~~L~~L~Ls~N~l~-~lp~- 302 (594)
...++|++|++++|.+ .+|...+.. |++|+|++|.++.+ .++.... ..+++|++|+|++|.++ .+|.
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 4457899999999999 888776544 89999999997543 3444331 16899999999999998 5664
Q ss_pred c--CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc
Q psy6452 303 F--LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 303 ~--~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
+ ..+++|++|++++|+++++|..+.... ...+++|++|++++|+++.++...|.++++|++|++++|++.+...
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHH-TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHH-HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 4 789999999999999999875554321 1223678888888888888887777788888888888887653100
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 460 (594)
++..+.+..+++|+.|++++| .+++.
T Consensus 191 ----------------~~~~~~~~~l~~L~~L~L~~N----------------------------------~l~~~---- 216 (312)
T 1wwl_A 191 ----------------LISALCPLKFPTLQVLALRNA----------------------------------GMETP---- 216 (312)
T ss_dssp ----------------HHHHSCTTSCTTCCEEECTTS----------------------------------CCCCH----
T ss_pred ----------------HHHHHHhccCCCCCEEECCCC----------------------------------cCcch----
Confidence 011110122333333333332 22210
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccc--ccccCCCCCcEEEccCCCCccc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIP--EDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
+.++. .+..+++|++|+|++|+|+..+ ..+..+++|++|+|++|+|+.+
T Consensus 217 ----------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 217 ----------------------------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp ----------------------------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred ----------------------------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 01111 1234567777777777777543 3356678888888888888888
Q ss_pred CccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCccc
Q psy6452 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 538 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l 583 (594)
|..+. ++|++|+|++|+|+.+|. +..+++|++|++++|+|+..
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 77665 788888888888888766 78888888888888888754
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=234.88 Aligned_cols=243 Identities=23% Similarity=0.333 Sum_probs=178.4
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccE
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQT 386 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~ 386 (594)
.+.++++++.++.+|..+ +.+++.|+|++|+++.++...|.++++|++|+|++|.|+.+....+ .++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 344555555555555322 2445555555555555555555555555555555555555543333 245555
Q ss_pred EeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCC-ccccccCccccccCC
Q psy6452 387 FSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN-TAAVMSNVSQLKYLK 465 (594)
Q Consensus 387 L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~ 465 (594)
|++++|.+..++... +..+++|+.|++++|. ...+|. ..+..+++|+.|++++ +.+....+..|..++
T Consensus 117 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~--i~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 117 LELFDNRLTTIPNGA-FVYLSKLKELWLRNNP--IESIPS--------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp EECCSSCCSSCCTTT-SCSCSSCCEEECCSCC--CCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred EECCCCcCCeeCHhH-hhccccCceeeCCCCc--ccccCH--------HHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 555555555565543 4788999999999985 223332 2345678999999998 556666777899999
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccC-ccccC
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLP-ESFAN 543 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~ 543 (594)
+|++|++++| .+..+| .+..+++|++|+|++|+|+.+ |..|..+++|+.|+|++|+|+.++ ..|..
T Consensus 186 ~L~~L~L~~n-----------~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 186 NLRYLNLAMC-----------NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp SCCEEECTTS-----------CCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ccCeecCCCC-----------cCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 9999999995 455666 478899999999999999977 556999999999999999999884 48999
Q ss_pred CCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+|..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999988766 7899999999999999874
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=216.86 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=123.6
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTF 387 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L 387 (594)
++++++++.++.+|.. +++++++|++++|.++.++...|..+++|++|++++|.++++.+..+ .++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~--------~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG--------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTT--------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcC--------CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 4555555555555532 23455566666666665555555566666666666666665533322 2344444
Q ss_pred eCCCCC-CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 388 SMNHNI-GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 388 ~L~~N~-~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
++++|. +..++... +..+++ |++|++++|.+++..+..+..+++
T Consensus 86 ~l~~n~~l~~~~~~~-~~~l~~----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 86 DLSDNAQLRSVDPAT-FHGLGR----------------------------------LHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp ECCSCTTCCCCCTTT-TTTCTT----------------------------------CCEEECTTSCCCCCCTTTTTTCTT
T ss_pred eCCCCCCccccCHHH-hcCCcC----------------------------------CCEEECCCCcCCEECHhHhhCCcC
Confidence 444442 33332221 234444 445555555555555555666666
Q ss_pred cceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFAN 543 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 543 (594)
|++|++++| .+..+| ..+..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+++.+ |..|..
T Consensus 131 L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 131 LQYLYLQDN-----------ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp CCEEECCSS-----------CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCEEECCCC-----------cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 666666664 223333 2355566666666666666666553 66666666666666666655 446666
Q ss_pred CCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+++|+.|++++|+|+.+|.. +..+++|++|++++|++..
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 66666667666666666543 6666666666666666653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=224.55 Aligned_cols=229 Identities=18% Similarity=0.179 Sum_probs=180.7
Q ss_pred cCccEEeccCCcccc---CchhhhhccccccCCCcceEEcCC-CCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 307 KVLKELDISHNNFES---MPLCLQVHFYVHIPYKHSQSDISH-NNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~---lp~~~~~~~~~~~~~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
.++++|+|++|.+++ +|..+... ++|++|++++ |.+.+..+..|.++++|++|++++|.+++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l------~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------- 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL------PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA------- 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC------TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------
T ss_pred ceEEEEECCCCCccCCcccChhHhCC------CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------
Confidence 567888888888874 56554322 5777777774 777644444456777777777777777642
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|..+ ..+++|+.|++++|. +.+.+|..+ ..+++|++|++++|.+++..+..+.
T Consensus 117 --------------~p~~~--~~l~~L~~L~Ls~N~-l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 117 --------------IPDFL--SQIKTLVTLDFSYNA-LSGTLPPSI---------SSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp --------------CCGGG--GGCTTCCEEECCSSE-EESCCCGGG---------GGCTTCCEEECCSSCCEEECCGGGG
T ss_pred --------------CCHHH--hCCCCCCEEeCCCCc-cCCcCChHH---------hcCCCCCeEECcCCcccCcCCHHHh
Confidence 33332 567777777777763 444555433 4467889999999999988899999
Q ss_pred cCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+. +|++|++++| ...+.+|..+..++ |++|++++|.++ .+|..|..+++|++|+|++|+++..+..
T Consensus 171 ~l~~~L~~L~L~~N----------~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 171 SFSKLFTSMTISRN----------RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CCCTTCCEEECCSS----------EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred hhhhcCcEEECcCC----------eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 998 9999999998 56668888898887 999999999999 5566799999999999999999976666
Q ss_pred ccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCCCc-ccCH
Q psy6452 541 FANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKYWM-FLTI 585 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~l~~ 585 (594)
+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+++ .+|.
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 889999999999999999 88999999999999999999998 4544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=222.29 Aligned_cols=235 Identities=20% Similarity=0.223 Sum_probs=148.4
Q ss_pred cCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCccccCchhhhhcccccc
Q psy6452 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334 (594)
Q Consensus 256 ~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~ 334 (594)
..+++++|+|++|.++. +|..+ ..+++|++|+|++|.++.+| .+..+++|++|+|++|.++.+|..+...
T Consensus 79 ~~~~l~~L~L~~n~l~~---lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l----- 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ---FPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL----- 149 (328)
T ss_dssp TSTTCCEEEEESSCCSS---CCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC-----
T ss_pred cccceeEEEccCCCchh---cChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC-----
Confidence 45778888888888553 56554 45888888888888888777 4777888888888888888777654321
Q ss_pred CCCcceEEcCCCCCC-CCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEE
Q psy6452 335 PYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~ 413 (594)
++|++|++++|++. .+|.... . .++.+ .....++|++|++++|.+..+|..+ ..++
T Consensus 150 -~~L~~L~L~~n~~~~~~p~~~~-~------~~~~~-------~~~~l~~L~~L~L~~n~l~~lp~~l--~~l~------ 206 (328)
T 4fcg_A 150 -NRLRELSIRACPELTELPEPLA-S------TDASG-------EHQGLVNLQSLRLEWTGIRSLPASI--ANLQ------ 206 (328)
T ss_dssp -TTCCEEEEEEETTCCCCCSCSE-E------EC-CC-------CEEESTTCCEEEEEEECCCCCCGGG--GGCT------
T ss_pred -cCCCEEECCCCCCccccChhHh-h------ccchh-------hhccCCCCCEEECcCCCcCcchHhh--cCCC------
Confidence 35555555554332 3332221 0 00000 0000223333333333333333332 3333
Q ss_pred CcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcc
Q psy6452 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL 493 (594)
Q Consensus 414 Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~ 493 (594)
+|++|++++|.+++. +..+..+++|++|++++| +..+.+|.
T Consensus 207 ----------------------------~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n----------~~~~~~p~ 247 (328)
T 4fcg_A 207 ----------------------------NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGC----------TALRNYPP 247 (328)
T ss_dssp ----------------------------TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTC----------TTCCBCCC
T ss_pred ----------------------------CCCEEEccCCCCCcC-chhhccCCCCCEEECcCC----------cchhhhHH
Confidence 455555555555543 335677778888888877 66777787
Q ss_pred cccCCCCCcEEeCccccCc-cccccccCCCCCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCCccC
Q psy6452 494 SILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++. .+|..+..+++|+.+++..|.+..++
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 8888888888888887655 77777888888888888887765 67888888888888888887766553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=213.45 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=118.7
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+.++++++++++++|.++.+|..+ +++++.|++++|.++.++...|.++++|++|++++|.|+.++.....+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred ccccCCccEEECCCCCCCcCCCCC--------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 456677777777777777777432 357777888888887777777788889999999999888776655555
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|++|++++|.+..+|..+ ..+ ++|++|++++|+++...+..|.
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~--~~l----------------------------------~~L~~L~l~~N~l~~l~~~~~~ 121 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLG--QTL----------------------------------PALTVLDVSFNRLTSLPLGALR 121 (290)
T ss_dssp TCCEEECCSSCCSSCCCCT--TTC----------------------------------TTCCEEECCSSCCCCCCSSTTT
T ss_pred cCCEEECCCCcCCcCchhh--ccC----------------------------------CCCCEEECCCCcCcccCHHHHc
Confidence 6666666666665555432 222 3444444444445544445555
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
.+++|++|++++| .+..+|. .+..+++|+.|+|++|+|+.+|.. |..+++|++|+|++|+|+.+|..
T Consensus 122 ~l~~L~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 122 GLGELQELYLKGN-----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TCTTCCEEECTTS-----------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCC-----------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 5555555555553 2222222 233455555555555555555443 34455555555555555555554
Q ss_pred ccCCCCCCEEECcCCCCC
Q psy6452 541 FANLKSLKILDVSYNKLT 558 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~ 558 (594)
+..+.+|+.|+|++|.+.
T Consensus 191 ~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCCCSEEECCSCCBC
T ss_pred hcccccCCeEEeCCCCcc
Confidence 444455555555555554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-25 Score=247.53 Aligned_cols=334 Identities=14% Similarity=0.053 Sum_probs=218.1
Q ss_pred CCCcccEEEccCCCCcccc----hHhhhcCCCCCEEECCCCCCCCcc--ccchhhhhcCCCCCEEEcCCCCCCCCC-CcC
Q psy6452 232 QYHDIFTVNLSHQDINFVQ----ESMSQKLTNLTVLDLSHNNHQDIN--FVQESMSQKLTNLIVLDLSHNKLSELP-DFL 304 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~i~--~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~ 304 (594)
++++|++|+|++|.++... ...+..+++|++|++++|.++++. .+ ...+..+++|++|++++|.+..++ .+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 4678888888888876553 234567888888888888876322 22 234467888888888888887776 356
Q ss_pred CCcCccEEeccCCcccc-CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCc---cc
Q psy6452 305 NFKVLKELDISHNNFES-MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP---RC 380 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~l~~-lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~ 380 (594)
.+++|++|++++..... .+... .....+.+|+.|+++++....++. .+..+++|++|++++|.++..... ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKY---MNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSS---SCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred hhhHHHhhcccccccccchHHHH---HHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 77888888887533221 11110 112344678888888865555554 345788899999998887653321 34
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcC----------CCCccCCccHHHhhhcccccccccCCCcEEEcCC
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS----------TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~----------n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~ 450 (594)
.++|+.|+++++ +...........+++|+.|++++ ++...+.-...+ ...+++|++|+++.
T Consensus 317 ~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--------~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 317 CPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL--------AQGCQELEYMAVYV 387 (592)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH--------HHHCTTCSEEEEEE
T ss_pred CcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH--------HhhCccCeEEEeec
Confidence 568888888843 22111111235678899999984 332222111111 13467899999988
Q ss_pred ccccccCcccccc-CCCcceEeCCCCcCccccccccccccc------CcccccCCCCCcEEeCcccc--Cc-ccccc-cc
Q psy6452 451 TAAVMSNVSQLKY-LKNIKYLNCSNDIDHRKSQDFVNVLWE------LPLSILYLSSIQELHLSNVQ--LN-CIPED-IG 519 (594)
Q Consensus 451 n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~n~~~~------ip~~~~~l~~L~~L~Ls~N~--l~-~ip~~-~~ 519 (594)
+.+++..+..+.. +++|+.|+++++... +.++. ++..+..+++|++|++++|. ++ ..+.. ..
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~-------n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDRE-------ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCC-------SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCC-------ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 8888777766655 888999988621000 23333 33335668889999997543 55 22233 34
Q ss_pred CCCCCcEEEccCCCCcc--cCccccCCCCCCEEECcCCCCC--ccCcccccCCCCcEEEccCCCCcccCHh
Q psy6452 520 NLICLEKLNISHNKVYK--LPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
.+++|++|+|++|+++. ++..+..+++|++|+|++|+|+ .++..+..+++|++|+|++|+++.....
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 57889999999998873 4555678889999999999887 2444456788999999999988765443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=209.68 Aligned_cols=216 Identities=19% Similarity=0.269 Sum_probs=181.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..+..++.||....++|++|++++|+++++++ ..|.++
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~---------------------------------------~~~~~l 51 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS---------------------------------------YSFFSF 51 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECT---------------------------------------TTTTTC
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCH---------------------------------------hHhccc
Confidence 45566778899998888899999999999998762 123457
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|++++|+++.+++..|.++++|++|++++|.+++ +++..|..+++|++|++++|.++.++. +..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc---cChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 899999999999999999889999999999999999655 666778899999999999999998874 889999999
Q ss_pred EeccCCcccc--CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCc----EEECCCCCCCCCCCccccC-Cc
Q psy6452 312 LDISHNNFES--MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLV----KLDISHNQIKILHKPRCTH-TL 384 (594)
Q Consensus 312 L~Ls~N~l~~--lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~----~L~Ls~N~l~~l~~~~~~~-~L 384 (594)
|++++|.++. +|..+.. .++|++|++++|+++.++...|..+++|+ .|++++|.++.++...+.. +|
T Consensus 129 L~l~~n~l~~~~l~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L 202 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (276)
T ss_dssp EECCSSCCCCCCCCGGGGG------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE
T ss_pred EECcCCccceecCchhhcc------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc
Confidence 9999999997 5655432 26899999999999999888777777777 8999999999887665443 79
Q ss_pred cEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 385 ~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+.|++++|.+..+|... +..+++|+.|++++|.
T Consensus 203 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSC
T ss_pred cEEECCCCceeecCHhH-hcccccccEEEccCCc
Confidence 99999999888888765 4678888888888864
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=209.35 Aligned_cols=204 Identities=25% Similarity=0.269 Sum_probs=156.1
Q ss_pred cCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc
Q psy6452 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK 307 (594)
Q Consensus 228 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~ 307 (594)
|.+..+++++.+++++++++.+|...+ +++++|+|++|.+++ +++..|..+++|++|+|++|.|+.++....++
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred ccccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 445778999999999999999997654 789999999999654 66777889999999999999999888778899
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
+|++|++++|+++.+|..+. ..++|+.|++++|+++.++...|.++++|++|++++|+++++++.
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--------- 142 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------- 142 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTT------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---------
T ss_pred cCCEEECCCCcCCcCchhhc------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh---------
Confidence 99999999999998886432 124677777777777777776677777777777777776654322
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.|..+++|
T Consensus 143 ------------------------------------------------------------------------~~~~l~~L 150 (290)
T 1p9a_G 143 ------------------------------------------------------------------------LLTPTPKL 150 (290)
T ss_dssp ------------------------------------------------------------------------TTTTCTTC
T ss_pred ------------------------------------------------------------------------hcccccCC
Confidence 12223333
Q ss_pred ceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCc
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~ 535 (594)
+.|++++| .+..+|. .+..+++|+.|+|++|+|+.+|..+..+.+|+.|+|++|.+.
T Consensus 151 ~~L~L~~N-----------~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANN-----------NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTS-----------CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCC-----------cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 33333332 2233333 235578899999999999999999888899999999999987
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=207.99 Aligned_cols=204 Identities=22% Similarity=0.259 Sum_probs=129.9
Q ss_pred CCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCCCCCCCCCchhhhcccCcccEEE
Q psy6452 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413 (594)
Q Consensus 336 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~ 413 (594)
.++++|++++|.++.++...|.++++|++|++++|+++.++...+ .++|++|++++|.+..++... +..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l------- 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGL------- 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTC-------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-hcCC-------
Confidence 445555555555555555455555566666666665555443222 123333333333333333221 2333
Q ss_pred CcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc-cCc
Q psy6452 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELP 492 (594)
Q Consensus 414 Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~-~ip 492 (594)
++|++|++++|.+++..+..+..+++|++|++++| ...+ .+|
T Consensus 100 ---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------~l~~~~l~ 142 (276)
T 2z62_A 100 ---------------------------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN----------LIQSFKLP 142 (276)
T ss_dssp ---------------------------TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS----------CCCCCCCC
T ss_pred ---------------------------ccccEEECCCCCccccCchhcccCCCCCEEECcCC----------ccceecCc
Confidence 45555555555666655556777888888888885 2222 357
Q ss_pred ccccCCCCCcEEeCccccCccccc-cccCCCCCc----EEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcc-ccc
Q psy6452 493 LSILYLSSIQELHLSNVQLNCIPE-DIGNLICLE----KLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVM 566 (594)
Q Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~ 566 (594)
..+..+++|++|+|++|+++.++. .+..+++|+ +|++++|+++.++.......+|+.|+|++|+|+.+|.. +..
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence 778888888888888888887754 355555555 88888888888866554555888888888888888766 678
Q ss_pred CCCCcEEEccCCCCcccC
Q psy6452 567 LSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 567 l~~L~~L~L~~N~l~~l~ 584 (594)
+++|++|++++|+|+.-.
T Consensus 223 l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSCCEEECCSSCBCCCT
T ss_pred cccccEEEccCCcccccC
Confidence 888888888888888543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-23 Score=203.14 Aligned_cols=88 Identities=28% Similarity=0.513 Sum_probs=48.0
Q ss_pred ccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCc
Q psy6452 495 ILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571 (594)
Q Consensus 495 ~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~ 571 (594)
+..+++|++|+|++|.|+.+|.. |..+++|++|+|++|+++.++. .|..+++|++|+|++|+|+.+|.. +..+++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 34445555555555555555443 4555555555555555555543 355555555555555555555443 55555555
Q ss_pred EEEccCCCCcc
Q psy6452 572 TFYAQRKYWMF 582 (594)
Q Consensus 572 ~L~L~~N~l~~ 582 (594)
.|+|++|+|..
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 55555555543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=204.17 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=152.9
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++++++.||....+++++|+|++|+++++++ ..|.+
T Consensus 19 ~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~ 59 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPS---------------------------------------KAFHR 59 (270)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCT---------------------------------------TSSSS
T ss_pred CEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCH---------------------------------------HHhcC
Confidence 467888899999998888889999999999987651 23355
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+|+.++..+|..+++|++|++++|++++ ++...|..+++|++|++++|.++.++. |..+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC---CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc---CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 7889999999999999998888889999999999999655 667778889999999999999998774 77889999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEe
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~ 388 (594)
+|++++|.++.+|...+. ..++|+.|++++|.++.++...|.++++|++|++++|+++.++...+ .++|+.|+
T Consensus 137 ~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFD-----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHhHcc-----CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 999999999988765432 22688888888888888888888888888888888888887654332 22444444
Q ss_pred CCCC
Q psy6452 389 MNHN 392 (594)
Q Consensus 389 L~~N 392 (594)
+++|
T Consensus 212 l~~N 215 (270)
T 2o6q_A 212 LQEN 215 (270)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 4444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-24 Score=216.90 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=170.9
Q ss_pred CccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCc
Q psy6452 151 ALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN 230 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~ 230 (594)
+|+.+.+++|.+ .+|..+...|++|+|++|+++........ . .....+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~------~-------------------------~~~~~~ 91 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRI------L-------------------------FGALRV 91 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHH------H-------------------------HHHHHH
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHH------H-------------------------HHHHHh
Confidence 466778888888 89988877799999999999653311000 0 000001
Q ss_pred cCCCcccEEEccCCCCcc-cchHhh-hcCCCCCEEECCCCCCCCccccchhhhhcC-----CCCCEEEcCCCCCCCCC--
Q psy6452 231 KQYHDIFTVNLSHQDINF-VQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKL-----TNLIVLDLSHNKLSELP-- 301 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~-l~~~~f-~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l-----~~L~~L~Ls~N~l~~lp-- 301 (594)
.++++|++|+|++|+++. ++...| ..+++|++|+|++|+++++ | ..+..+ ++|++|+|++|+++.++
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---h-HHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 246788888888888874 444433 7788888888888886653 3 334454 78888888888888766
Q ss_pred CcCCCcCccEEeccCCccccC---chhhhhccccccCCCcceEEcCCCCCCC---CChhhhccCCCCcEEECCCCCCCCC
Q psy6452 302 DFLNFKVLKELDISHNNFESM---PLCLQVHFYVHIPYKHSQSDISHNNFES---MPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 302 ~~~~l~~L~~L~Ls~N~l~~l---p~~~~~~~~~~~~~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
.|..+++|++|++++|++.+. +..+. ....++|++|++++|+++. ++...+.++++|++|++++|++++.
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALC----PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSC----TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHH----hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 477888888888888887642 22220 1223678888888888884 3445566778888888888888875
Q ss_pred CC-c--cccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCcc
Q psy6452 376 HK-P--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452 (594)
Q Consensus 376 ~~-~--~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~ 452 (594)
.+ . ...++|++|++++|.+..+|..+. ++|+.|++++|+ +.+ +|. +..+++|++|++++|+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~-l~~-~p~----------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNR-LDR-NPS----------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSC-CCS-CCC----------TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCC-CCC-Chh----------HhhCCCCCEEeccCCC
Confidence 52 2 234688888888888888887652 788888888875 222 232 3456788888888888
Q ss_pred cccc
Q psy6452 453 AVMS 456 (594)
Q Consensus 453 l~~~ 456 (594)
+++.
T Consensus 308 l~~~ 311 (312)
T 1wwl_A 308 FLDS 311 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8753
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=202.88 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=144.0
Q ss_pred CcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEc
Q psy6452 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNL 241 (594)
Q Consensus 162 l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L 241 (594)
++.||. ..++|++|++++|+++++++ ..|.++++|++|++
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~---------------------------------------~~~~~l~~L~~L~l 62 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPS---------------------------------------HAFSNLPNISRIYV 62 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECT---------------------------------------TTTTTCTTCCEEEE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECH---------------------------------------HHccCCCCCcEEeC
Confidence 666776 55678888888888877651 12345677888888
Q ss_pred cCCC-CcccchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc---EEeccC
Q psy6452 242 SHQD-INFVQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK---ELDISH 316 (594)
Q Consensus 242 s~n~-l~~l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~---~L~Ls~ 316 (594)
++|+ ++.+++..|.++++|++|++++ |+++. +++..|..+++|++|++++|.++.+|.|..+++|+ +|++++
T Consensus 63 ~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 63 SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139 (239)
T ss_dssp ECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---ECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEES
T ss_pred CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---cCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCC
Confidence 8886 7888777777888888888887 77543 56666777888888888888888777777777777 888888
Q ss_pred C-ccccCchhhhhccccccCCCcc-eEEcCCCCCCCCChhhhccCCCCcEEECCCCC-CCCCCCccc--c-CCccEEeCC
Q psy6452 317 N-NFESMPLCLQVHFYVHIPYKHS-QSDISHNNFESMPLCLQVHFCKLVKLDISHNQ-IKILHKPRC--T-HTLQTFSMN 390 (594)
Q Consensus 317 N-~l~~lp~~~~~~~~~~~~~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~--~-~~L~~L~L~ 390 (594)
| .++.+|...+.. ..+|+ .|++++|+++.++...|.. ++|+.|++++|+ ++.++...+ . ++|+.|+++
T Consensus 140 N~~l~~i~~~~~~~-----l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 140 NPYMTSIPVNAFQG-----LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCCEECTTTTTT-----TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred CcchhhcCcccccc-----hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 8 777776553322 25677 7888888777777777755 677888888884 777665433 2 567777777
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
+|.+..+|.. .+++|+.|+++++
T Consensus 214 ~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 214 QTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp TCCCCCCCCT----TCTTCSEEECTTC
T ss_pred CCccccCChh----HhccCceeeccCc
Confidence 7777777653 3566777777664
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=205.28 Aligned_cols=216 Identities=18% Similarity=0.241 Sum_probs=148.9
Q ss_pred CCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCcc
Q psy6452 260 LTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339 (594)
Q Consensus 260 L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~ 339 (594)
+..+.+..+.++++ +. +..+++|++|++++|.++.++.+..+++|++|++++|.++.++. +. ..++|+
T Consensus 21 ~~~~~l~~~~~~~~--~~---~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~------~l~~L~ 88 (308)
T 1h6u_A 21 AIKIAAGKSNVTDT--VT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LK------NLTKIT 88 (308)
T ss_dssp HHHHHTTCSSTTSE--EC---HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GT------TCCSCC
T ss_pred HHHHHhCCCCcCce--ec---HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-Hc------cCCCCC
Confidence 33445666775552 11 24678899999999999988888888999999999999888775 22 225677
Q ss_pred eEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCC
Q psy6452 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419 (594)
Q Consensus 340 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~ 419 (594)
+|++++|.++.++ .+..+++|++|++++|++++++.. ..+++|+.|++++
T Consensus 89 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~l-------------------------~~l~~L~~L~l~~--- 138 (308)
T 1h6u_A 89 ELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPL-------------------------AGLSNLQVLYLDL--- 138 (308)
T ss_dssp EEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGGG-------------------------TTCTTCCEEECCS---
T ss_pred EEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchhh-------------------------cCCCCCCEEECCC---
Confidence 7777777777664 345666777777777766654321 2333344444433
Q ss_pred ccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCC
Q psy6452 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499 (594)
Q Consensus 420 ~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~ 499 (594)
|.+++..+ +..+++|+.|++++| .+..++. +..++
T Consensus 139 -------------------------------n~l~~~~~--l~~l~~L~~L~l~~n-----------~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 139 -------------------------------NQITNISP--LAGLTNLQYLSIGNA-----------QVSDLTP-LANLS 173 (308)
T ss_dssp -------------------------------SCCCCCGG--GGGCTTCCEEECCSS-----------CCCCCGG-GTTCT
T ss_pred -------------------------------CccCcCcc--ccCCCCccEEEccCC-----------cCCCChh-hcCCC
Confidence 33333222 555666666666664 2333443 66778
Q ss_pred CCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCccc
Q psy6452 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGF 564 (594)
Q Consensus 500 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l 564 (594)
+|+.|++++|.++.++. +..+++|++|+|++|+++.++. +..+++|+.|++++|+++..|..+
T Consensus 174 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 89999999999988875 7888899999999999988874 888889999999999888776553
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-23 Score=203.39 Aligned_cols=227 Identities=19% Similarity=0.240 Sum_probs=128.7
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
..+..+++..+.+..+.. ...+++|+.|++++|.++.+ + .+..+++|++|++++|.++.++.+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~---~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCC---T--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccccc--cccccceeeeeeCCCCcccc---c--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEE
Confidence 345556666666665544 34567777777777775543 1 2356677777777777777666666677777777
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
+++|.+++++...+. ..++|++|++++|+++.++...|.++++|++|++++|+++++++
T Consensus 92 L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 150 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFD-----KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------------- 150 (272)
T ss_dssp CTTSCCCCCCTTTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CCCCccCccChhHhc-----CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH----------------
Confidence 777776665543321 11345555555555555555544455555555555555443321
Q ss_pred CCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCC
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 473 (594)
..+..+++|+.|+++
T Consensus 151 -----------------------------------------------------------------~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 151 -----------------------------------------------------------------GVFDKLTNLTELDLS 165 (272)
T ss_dssp -----------------------------------------------------------------TTTTTCTTCCEEECC
T ss_pred -----------------------------------------------------------------HHhccCccCCEEECC
Confidence 222223333333333
Q ss_pred CCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCccccCCCCCCEEEC
Q psy6452 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPESFANLKSLKILDV 552 (594)
Q Consensus 474 ~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 552 (594)
+| +..+..+..+..+++|++|++++|+++.++.. +..+++|++|+|++|.+. +.+++|+.|++
T Consensus 166 ~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~ 229 (272)
T 3rfs_A 166 YN----------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSE 229 (272)
T ss_dssp SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHH
T ss_pred CC----------CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHH
Confidence 32 11111122234556677777777777766544 677777777777777654 23456777777
Q ss_pred cCCCCC-ccCcccccCCC
Q psy6452 553 SYNKLT-MLPDGFVMLSN 569 (594)
Q Consensus 553 s~N~l~-~ip~~l~~l~~ 569 (594)
+.|+++ .+|.+++.+..
T Consensus 230 ~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCCcccCcccccCC
Confidence 777777 66766665544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-23 Score=216.31 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred EEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccch----hhhhcCC-CCCEEEcCCCCCCCCC--CcCCC----
Q psy6452 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQE----SMSQKLT-NLIVLDLSHNKLSELP--DFLNF---- 306 (594)
Q Consensus 238 ~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~----~~~~~l~-~L~~L~Ls~N~l~~lp--~~~~l---- 306 (594)
++++++|.++...+..+...++|++|+|++|.+++ .+. ..+..++ +|++|+|++|.++... .+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45677777777766666556668888888887544 333 4556676 7888888888777543 23332
Q ss_pred -cCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhc----c-CCCCcEEECCCCCCCC
Q psy6452 307 -KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV----H-FCKLVKLDISHNQIKI 374 (594)
Q Consensus 307 -~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~----~-l~~L~~L~Ls~N~l~~ 374 (594)
++|++|+|++|.++..+.......+...+++|++|++++|.++..+...+. . .++|++|++++|.++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 778888888888776543322221223335677777777777666554432 2 2467777777777664
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=199.72 Aligned_cols=184 Identities=22% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+++.++ .+..+++|++|++++|.+++ +++..|..+++|++|++++|+++.++. |..+++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc---cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 456666666666666654 35566666666666666443 445555566666666666666665553 55666666
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMN 390 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~ 390 (594)
+|++++|.++++|...+. ..++|+.|++++|++++++...|.++++|++|++++|++++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------- 197 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-------------- 197 (272)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------
T ss_pred EEECCCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--------------
Confidence 666666666665543321 1245666666666666665555555566666666666555443
Q ss_pred CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 391 HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 391 ~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
... +..+++|+.|++++|. +.+. +++++.+++..|.+++..|..++.+..
T Consensus 198 --------~~~-~~~l~~L~~L~l~~N~-~~~~----------------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 198 --------DGV-FDRLTSLQYIWLHDNP-WDCT----------------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --------TTT-TTTCTTCCEEECCSSC-BCCC----------------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --------HHH-HhCCcCCCEEEccCCC-cccc----------------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 322 3456677777777653 2222 235566666666666666665555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=199.19 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=165.8
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
++..+.+..+.++.+.. +..+++|++|++++|.++.+ + .+..+++|++|++++|.++.++.+..+++|++|++
T Consensus 20 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l---~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L 92 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI---E--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL 92 (308)
T ss_dssp HHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC---T--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred HHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCc---h--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc
Confidence 34445666777776544 45789999999999997764 3 25789999999999999999988999999999999
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIG 394 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~ 394 (594)
++|.++.++. + ...++|++|++++|.++.++. +..+++|++|++++|.+++++..
T Consensus 93 ~~n~l~~~~~-~------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l---------------- 147 (308)
T 1h6u_A 93 SGNPLKNVSA-I------AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL---------------- 147 (308)
T ss_dssp CSCCCSCCGG-G------TTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGG----------------
T ss_pred cCCcCCCchh-h------cCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCccc----------------
Confidence 9999999863 2 233799999999999999875 67999999999999999876532
Q ss_pred CCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCC
Q psy6452 395 MKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474 (594)
Q Consensus 395 ~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 474 (594)
..+++|+.|++++| .+++..+ +..+++|+.|++++
T Consensus 148 ---------~~l~~L~~L~l~~n----------------------------------~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 148 ---------AGLTNLQYLSIGNA----------------------------------QVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp ---------GGCTTCCEEECCSS----------------------------------CCCCCGG--GTTCTTCCEEECCS
T ss_pred ---------cCCCCccEEEccCC----------------------------------cCCCChh--hcCCCCCCEEECCC
Confidence 23333444444433 3332222 45566666666666
Q ss_pred CcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccc
Q psy6452 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESF 541 (594)
Q Consensus 475 n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~ 541 (594)
| .+..++. +..+++|++|+|++|+++.++. +..+++|+.|+|++|.++..|..+
T Consensus 183 n-----------~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 183 N-----------KISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp S-----------CCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred C-----------ccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 4 2333443 6678899999999999998874 899999999999999999877644
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=205.50 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=60.0
Q ss_pred cCCCCCcEEeCccccCccc-cccccCC---CCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCc
Q psy6452 496 LYLSSIQELHLSNVQLNCI-PEDIGNL---ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571 (594)
Q Consensus 496 ~~l~~L~~L~Ls~N~l~~i-p~~~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~ 571 (594)
..+++|++|+|++|+|+.+ |..+..+ ++|++|+|++|+|+.+|..+. ++|++|+|++|+|+.+|. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 3456677777777777754 5555544 577888888888877776553 678888888888887755 66778888
Q ss_pred EEEccCCCCcc
Q psy6452 572 TFYAQRKYWMF 582 (594)
Q Consensus 572 ~L~L~~N~l~~ 582 (594)
+|+|++|+|+.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 88888887764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-23 Score=228.62 Aligned_cols=135 Identities=10% Similarity=0.002 Sum_probs=90.4
Q ss_pred ccCCCcEEEcC-----------CccccccCccc-cccCCCcceEeCCCCcCcccccccccccccCcccccC-CCCCcEEe
Q psy6452 439 VFSNLISLHMQ-----------NTAAVMSNVSQ-LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELH 505 (594)
Q Consensus 439 ~~~~L~~L~l~-----------~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~-l~~L~~L~ 505 (594)
.+++|++|+++ .+.++...... +..+++|++|+++.| +..+..+..+.. +++|+.|+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~----------~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS----------DITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES----------CCCHHHHHHHHHHCCSCCEEE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC----------CccHHHHHHHHhhCCCCcEEE
Confidence 35567777777 24554433322 345677777777554 223333334443 78899999
Q ss_pred Cc----cccCccc------cccccCCCCCcEEEccCCC--Ccc-cCcc-ccCCCCCCEEECcCCCCCc--cCcccccCCC
Q psy6452 506 LS----NVQLNCI------PEDIGNLICLEKLNISHNK--VYK-LPES-FANLKSLKILDVSYNKLTM--LPDGFVMLSN 569 (594)
Q Consensus 506 Ls----~N~l~~i------p~~~~~l~~L~~L~Ls~N~--l~~-lp~~-~~~l~~L~~L~Ls~N~l~~--ip~~l~~l~~ 569 (594)
++ .|.++.. +..+.++++|++|+|++|. ++. .+.. ...+++|++|+|++|+++. ++..+..+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 96 6677753 3336778999999997543 552 2222 3458899999999999983 5555788999
Q ss_pred CcEEEccCCCCccc
Q psy6452 570 LTTFYAQRKYWMFL 583 (594)
Q Consensus 570 L~~L~L~~N~l~~l 583 (594)
|++|+|++|+++.-
T Consensus 490 L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 490 LQKLEMRGCCFSER 503 (592)
T ss_dssp CCEEEEESCCCBHH
T ss_pred cCeeeccCCCCcHH
Confidence 99999999998643
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=191.10 Aligned_cols=176 Identities=22% Similarity=0.237 Sum_probs=151.2
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.++++++.++.+|..+.+++++|+|++|+++++.+ ..|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~---------------------------------------~~~~~ 57 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSD---------------------------------------ATFRG 57 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCT---------------------------------------TTTTT
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCH---------------------------------------hHhcC
Confidence 367888999999999888899999999999998762 22345
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+++..|..+++|++|+|++|++++ +++..|..+++|++|+|++|+|+.++. |..+++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS---LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc---cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 7899999999999999999989999999999999999665 677788899999999999999998884 78899999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
+|+|++|+++++|...+. ..++|+.|+|++|+++.++...|..+++|+.|++++|.++..
T Consensus 135 ~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFD-----KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECcCCcCCccCHHHcC-----cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999998864332 226899999999999999988888899999999999988753
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-22 Score=210.68 Aligned_cols=264 Identities=18% Similarity=0.177 Sum_probs=170.6
Q ss_pred EEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC------CcCCCc-CccEEeccCCccccCchhhhhcccccc
Q psy6452 262 VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP------DFLNFK-VLKELDISHNNFESMPLCLQVHFYVHI 334 (594)
Q Consensus 262 ~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp------~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~~~~ 334 (594)
++++++|.+++ ..+.++...++|++|+|++|.++.++ .|..++ +|++|+|++|.++..............
T Consensus 2 ~~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 56889999766 34455566677999999999998765 256777 899999999999876433322222223
Q ss_pred CCCcceEEcCCCCCCCCChhhhc----cC-CCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcc-cCc
Q psy6452 335 PYKHSQSDISHNNFESMPLCLQV----HF-CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQE-FLC 408 (594)
Q Consensus 335 ~~~L~~L~Ls~N~l~~i~~~~~~----~l-~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~-~~~ 408 (594)
+++|++|++++|.++......+. .+ ++|++|++++|.++......+.. .+.. .++
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------~l~~~~~~ 139 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-------------------AFSNLPAS 139 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-------------------HHTTSCTT
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-------------------HHHhCCCc
Confidence 36888888888888876655333 33 78888888888887654322110 0112 235
Q ss_pred ccEEECcCCCCccCCccHHHhhhccccccccc-CCCcEEEcCCccccccCccccc----cC-CCcceEeCCCCcCccccc
Q psy6452 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVF-SNLISLHMQNTAAVMSNVSQLK----YL-KNIKYLNCSNDIDHRKSQ 482 (594)
Q Consensus 409 L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~~~~~~~ 482 (594)
|+.|++++|. +.+.-+..+.... ..+ .+|++|++++|.+++..+..+. .+ ++|++|++++|.+....
T Consensus 140 L~~L~Ls~N~-l~~~~~~~l~~~l-----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~- 212 (362)
T 3goz_A 140 ITSLNLRGND-LGIKSSDELIQIL-----AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS- 212 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHH-----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-
T ss_pred eeEEEccCCc-CCHHHHHHHHHHH-----hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-
Confidence 6666666653 2221111111111 112 3788888888888777765443 34 58999999986433210
Q ss_pred ccccccccCcccccC-CCCCcEEeCccccCcccc-----ccccCCCCCcEEEccCCCCc--------ccCccccCCCCCC
Q psy6452 483 DFVNVLWELPLSILY-LSSIQELHLSNVQLNCIP-----EDIGNLICLEKLNISHNKVY--------KLPESFANLKSLK 548 (594)
Q Consensus 483 ~~~n~~~~ip~~~~~-l~~L~~L~Ls~N~l~~ip-----~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~ 548 (594)
...++..+.. .++|++|+|++|.|+..+ ..+..+++|++|+|++|.+. .++..+..+++|+
T Consensus 213 -----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 213 -----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp -----HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred -----HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 1125555555 358999999999888543 33577888999999998844 3344567788888
Q ss_pred EEECcCCCCCc
Q psy6452 549 ILDVSYNKLTM 559 (594)
Q Consensus 549 ~L~Ls~N~l~~ 559 (594)
.||+++|+|..
T Consensus 288 ~LdL~~N~l~~ 298 (362)
T 3goz_A 288 LVDKNGKEIHP 298 (362)
T ss_dssp EECTTSCBCCG
T ss_pred EEecCCCcCCC
Confidence 89999998873
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-22 Score=193.31 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=167.4
Q ss_pred CccEEecCCCCCcccChhh---hccCcEEEccCcc-ccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI---LVQLECLHIDNNK-AQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~---l~~L~~L~Ls~N~-i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
.++.+++++|+++.++... +++|++|++++|+ ++++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-------------------------------------- 73 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-------------------------------------- 73 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT--------------------------------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH--------------------------------------
Confidence 6779999999999999865 7889999999997 887662
Q ss_pred ccCccCCCcccEEEccC-CCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCC---EEEcCCC-CCCCCC
Q psy6452 227 NCCNKQYHDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI---VLDLSHN-KLSELP 301 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~---~L~Ls~N-~l~~lp 301 (594)
..|.++++|++|++++ |+|+.+++..|.++++|++|++++|.+++ +|. |..+++|+ +|++++| .++.++
T Consensus 74 -~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---lp~--~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 74 -HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---FPD--LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp -TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---CCC--CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred -hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---ccc--cccccccccccEEECCCCcchhhcC
Confidence 2335678999999999 99999999999999999999999999776 444 67888888 9999999 999887
Q ss_pred C--cCCCcCcc-EEeccCCccccCchhhhhccccccCCCcceEEcCCCC-CCCCChhhhccC-CCCcEEECCCCCCCCCC
Q psy6452 302 D--FLNFKVLK-ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN-FESMPLCLQVHF-CKLVKLDISHNQIKILH 376 (594)
Q Consensus 302 ~--~~~l~~L~-~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~-l~~i~~~~~~~l-~~L~~L~Ls~N~l~~l~ 376 (594)
. |.++++|+ +|++++|+++.+|...+.. .+|+.|++++|+ ++.++...|.++ ++|+.|++++|+++.++
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCEECTTTTTT------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cccccchhcceeEEEcCCCCCcccCHhhcCC------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 4 88999999 9999999999998765422 589999999995 999999999999 99999999999999988
Q ss_pred CccccCCccEEeCCCC
Q psy6452 377 KPRCTHTLQTFSMNHN 392 (594)
Q Consensus 377 ~~~~~~~L~~L~L~~N 392 (594)
.. ..++|+.|+++++
T Consensus 222 ~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK-GLEHLKELIARNT 236 (239)
T ss_dssp CT-TCTTCSEEECTTC
T ss_pred hh-HhccCceeeccCc
Confidence 76 5669999999876
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=204.51 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=165.9
Q ss_pred hhhccCccEEecCCCCCcc-----cChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccc
Q psy6452 146 TVKTEALSTRTFCDHELQS-----IEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219 (594)
Q Consensus 146 ~~~~~~L~~l~l~~n~l~~-----ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (594)
.++...++.+.+.+..++. +.... +++|++|++++|.+++..+...+.
T Consensus 60 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 113 (310)
T 4glp_A 60 TVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-------------------------- 113 (310)
T ss_dssp GGSSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--------------------------
T ss_pred HhhhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--------------------------
Confidence 3445556677777666532 33333 677999999999999765321100
Q ss_pred cccccccccCccCCCcccEEEccCCCCccc----chHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC
Q psy6452 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFV----QESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295 (594)
Q Consensus 220 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l----~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N 295 (594)
..+++|++|+|++|+++.. +...+..+++|++|+|++|.+++ +++..|+.+++|++|+|++|
T Consensus 114 -----------~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 114 -----------ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA---FSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp -----------CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC---CCTTSCCCCTTCCEEECCSC
T ss_pred -----------ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch---hhHHHhccCCCCCEEECCCC
Confidence 3467899999999998863 23445678999999999999655 56677788999999999999
Q ss_pred CCCC---CC---CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccC---CCCcEEE
Q psy6452 296 KLSE---LP---DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF---CKLVKLD 366 (594)
Q Consensus 296 ~l~~---lp---~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l---~~L~~L~ 366 (594)
++.+ ++ .+..+++|++|++++|+++.++...... ....++|++|+|++|+++++.+..+..+ ++|++|+
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 8763 32 2367889999999999998766432110 1223689999999999998733333344 6999999
Q ss_pred CCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 367 Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+++|+|+.++... .++|+.|++++|.+..+|. +..+++|+.|++++|.
T Consensus 258 Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCC
Confidence 9999999876544 3799999999999988876 3678999999999985
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=199.52 Aligned_cols=213 Identities=17% Similarity=0.164 Sum_probs=136.0
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+.+++++++||..+++++++|+|++|+|+.+++ ..|.++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~---------------------------------------~~f~~l 53 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQK---------------------------------------GAFSGF 53 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECT---------------------------------------TSSTTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCH---------------------------------------HHHcCC
Confidence 34455777888887777788888888888887651 233456
Q ss_pred CcccEEEccCCCCc-ccchHhhhcCCCCCE-EECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCc
Q psy6452 234 HDIFTVNLSHQDIN-FVQESMSQKLTNLTV-LDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVL 309 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L 309 (594)
++|++|+|++|++. .++..+|.++++|++ +.+++|+++ .+++.+|..+++|++|++++|+++.++. +....++
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc---ccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 77777777777763 466667777777654 455567743 3566667777777777777777776664 3345566
Q ss_pred cEEeccC-CccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECC-CCCCCCCCCccc--cCCcc
Q psy6452 310 KELDISH-NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS-HNQIKILHKPRC--THTLQ 385 (594)
Q Consensus 310 ~~L~Ls~-N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~--~~~L~ 385 (594)
..|++.+ +.++.++...+ ...+..++.|++++|+|+.++..+| ...+|+.|+++ +|.++.++...| .++|+
T Consensus 131 ~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp EEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred hhhhhccccccccccccch----hhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 6677654 46666664432 1223456677777777777777666 34567777775 466666665543 34677
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcCC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n 417 (594)
.|++++|.+..+|... +.+|+.|.+.++
T Consensus 206 ~LdLs~N~l~~lp~~~----~~~L~~L~~l~~ 233 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYG----LENLKKLRARST 233 (350)
T ss_dssp EEECTTSCCCCCCSSS----CTTCCEEECTTC
T ss_pred hhhcCCCCcCccChhh----hccchHhhhccC
Confidence 7777777777776533 344555554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=200.09 Aligned_cols=238 Identities=19% Similarity=0.187 Sum_probs=147.5
Q ss_pred cEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCC-CCC--CcCCCcCccE-E
Q psy6452 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELP--DFLNFKVLKE-L 312 (594)
Q Consensus 237 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~l~~L~~-L 312 (594)
+.+++++++++.||..++ +++++|+|++|+|+ .+++++|+++++|++|+|++|++. .+| .|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---TTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCcCcC---CCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 578889999999987653 67889999999854 477888888899999999999875 355 3677777664 5
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC-CCCCCCCCccccCCccEEeCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH-NQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
.+++|+++.+++..+.. .++|++|++++|+++.++...+....++..|++.+ +++..++...+.
T Consensus 86 ~~~~N~l~~l~~~~f~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~---------- 150 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQN-----LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---------- 150 (350)
T ss_dssp EEEETTCCEECTTSBCC-----CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----------
T ss_pred cccCCcccccCchhhhh-----ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh----------
Confidence 56667777765443211 13455555555555555544444444444554432 334333322111
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
.+ ...++.|++++|+++.+.+..|. ..+|+.++
T Consensus 151 -------------~~---------------------------------~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~ 183 (350)
T 4ay9_X 151 -------------GL---------------------------------SFESVILWLNKNGIQEIHNSAFN-GTQLDELN 183 (350)
T ss_dssp -------------TS---------------------------------BSSCEEEECCSSCCCEECTTSST-TEEEEEEE
T ss_pred -------------hc---------------------------------chhhhhhccccccccCCChhhcc-ccchhHHh
Confidence 00 01344445555555544444443 34566677
Q ss_pred CCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCccccccccCCCCCcEEEccC-CCCcccCccccCCCCCCE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH-NKVYKLPESFANLKSLKI 549 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~ 549 (594)
++++ |.++.+|. .|..+++|++|+|++|+|+.+|.. .+.+|+.|.+.+ +.++.+|. +..+++|+.
T Consensus 184 l~~~----------n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 184 LSDN----------NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp CTTC----------TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred hccC----------CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 7654 56677764 456788888888888888888764 234455554433 45677774 777888888
Q ss_pred EECcCC
Q psy6452 550 LDVSYN 555 (594)
Q Consensus 550 L~Ls~N 555 (594)
++++++
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 888764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-22 Score=223.02 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=95.2
Q ss_pred cCCCcEEEcCCccccccCccccc-cCCCcceEeCCCCcCccccccccccccc------CcccccCCCCCcEEeCccccCc
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLK-YLKNIKYLNCSNDIDHRKSQDFVNVLWE------LPLSILYLSSIQELHLSNVQLN 512 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~n~~~~------ip~~~~~l~~L~~L~Ls~N~l~ 512 (594)
+++|+.|.+..+.+++.....+. .+++|+.|+++.+..... +.++. ++..+..+++|+.|+|++ .++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-----~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP-----DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC-----CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc-----ccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 57888888888888776666654 588899999882100000 12222 222356788999999987 666
Q ss_pred -ccccccc-CCCCCcEEEccCCCCccc-Cccc-cCCCCCCEEECcCCCCCc--cCcccccCCCCcEEEccCCCCcc
Q psy6452 513 -CIPEDIG-NLICLEKLNISHNKVYKL-PESF-ANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 513 -~ip~~~~-~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~Ls~N~l~~--ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
..+..+. .+++|++|+|++|.++.. ...+ ..+++|++|+|++|+++. +......+++|++|++++|+++.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 2233344 489999999999999732 2233 678999999999999973 22335668999999999999853
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=205.53 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=128.5
Q ss_pred CCCEEEcCCCCCCCCCC-cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcE
Q psy6452 286 NLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK 364 (594)
Q Consensus 286 ~L~~L~Ls~N~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 364 (594)
+|+.|+|++|.|+++|. + .++|++|+|++|.|+.+| .. +++|+.|++++|.|+.+|. +.+ +|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-~~--------l~~L~~L~Ls~N~l~~ip~--l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-EL--------PASLEYLDACDNRLSTLPE--LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-CC--------CTTCCEEECCSSCCSCCCC--CCT--TCCE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-cc--------cCCCCEEEccCCCCCCcch--hhc--CCCE
Confidence 88899999998888885 4 378888888888888877 21 2577777777777777766 323 6777
Q ss_pred EECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCc
Q psy6452 365 LDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLI 444 (594)
Q Consensus 365 L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~ 444 (594)
|++++|.|++++. ..++|+.|++++|.+..+|.
T Consensus 125 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--------------------------------------------- 157 (571)
T 3cvr_A 125 LDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--------------------------------------------- 157 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---------------------------------------------
T ss_pred EECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---------------------------------------------
Confidence 7777777766543 33344444444443333322
Q ss_pred EEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCC
Q psy6452 445 SLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICL 524 (594)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L 524 (594)
.+++|+.|++++| .+..+|. +. ++|+.|+|++|.|+.+|. +.. +|
T Consensus 158 ------------------~l~~L~~L~Ls~N-----------~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L 202 (571)
T 3cvr_A 158 ------------------LPTSLEVLSVRNN-----------QLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RN 202 (571)
T ss_dssp ------------------CCTTCCEEECCSS-----------CCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-----
T ss_pred ------------------cCCCcCEEECCCC-----------CCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hh
Confidence 2344555555553 2333554 33 688889999999988887 654 67
Q ss_pred -------cEEEccCCCCcccCccccCCCCCCEEECcCCCCC-ccCcccccCCCC-------cEEEccCCCCcccC
Q psy6452 525 -------EKLNISHNKVYKLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL-------TTFYAQRKYWMFLT 584 (594)
Q Consensus 525 -------~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L-------~~L~L~~N~l~~l~ 584 (594)
+.|+|++|+|+.||..+..+++|+.|+|++|+|+ .+|..+..+... .++++++|.+..++
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~ 277 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC---------
T ss_pred hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccc
Confidence 8999999999988887777889999999999988 556666554332 13445555554443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=182.67 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=107.1
Q ss_pred CccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEE
Q psy6452 308 VLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTF 387 (594)
Q Consensus 308 ~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L 387 (594)
..++++++++.++.+|.. ++.+++.|++++|.++.++...|.++++|++|++++|.++++.+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~--------~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG--------IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF------- 79 (251)
T ss_dssp GGTEEECTTCCCSSCCSC--------CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------
T ss_pred CCeEEecCCCCccccCCC--------CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-------
Confidence 456677777777766643 23566777777777777776666777777777777777765433211
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
..++ +|++|++++|.++...+..|..+++|
T Consensus 80 ----------------~~l~----------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 80 ----------------DDLT----------------------------------ELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp ----------------TTCT----------------------------------TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ----------------ccCC----------------------------------cCCEEECCCCcccccChhHhcccCCC
Confidence 2222 34444444444444444555666666
Q ss_pred ceEeCCCCcCcccccccccccccCccc-ccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLS-ILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
++|++++| .+..+|.. +..+++|++|+|++|+|+.+|. .|..+++|++|+|++|+|+.++. .|..+
T Consensus 110 ~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 110 DKLYLGGN-----------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CEEECCSS-----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CEEEcCCC-----------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 67777664 23344432 4556667777777777766655 36666677777777777666644 56666
Q ss_pred CCCCEEECcCCCCC
Q psy6452 545 KSLKILDVSYNKLT 558 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~ 558 (594)
++|+.|+|++|+++
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 66777777777665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=205.19 Aligned_cols=254 Identities=11% Similarity=0.096 Sum_probs=163.2
Q ss_pred CCC-CcCCCcCccEEeccCCccccCc-hhhhhccccccCCCcceEEcCCCCCCCCC----hhh------hccCCCCcEEE
Q psy6452 299 ELP-DFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMP----LCL------QVHFCKLVKLD 366 (594)
Q Consensus 299 ~lp-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~----~~~------~~~l~~L~~L~ 366 (594)
.++ .+..+++|++|+|++|.++... ..+... +...++|+.|+|++|.+..+. ..+ +..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN--IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHT--TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHH--HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 444 3556788889999988887632 111111 122357788888776655432 222 34667777777
Q ss_pred CCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccccccc------
Q psy6452 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF------ 440 (594)
Q Consensus 367 Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~------ 440 (594)
|++|.++..... .++.. +..+++|+.|++++|. +.+..+..+... +..+
T Consensus 101 Ls~n~l~~~~~~-----------------~l~~~--l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-----l~~l~~~~~~ 155 (386)
T 2ca6_A 101 LSDNAFGPTAQE-----------------PLIDF--LSKHTPLEHLYLHNNG-LGPQAGAKIARA-----LQELAVNKKA 155 (386)
T ss_dssp CCSCCCCTTTHH-----------------HHHHH--HHHCTTCCEEECCSSC-CHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred CCCCcCCHHHHH-----------------HHHHH--HHhCCCCCEEECcCCC-CCHHHHHHHHHH-----HHHHhhhhhc
Confidence 777777652110 02222 2456677777777664 221111111111 1111
Q ss_pred ---CCCcEEEcCCcccccc-Cc---cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccC--
Q psy6452 441 ---SNLISLHMQNTAAVMS-NV---SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL-- 511 (594)
Q Consensus 441 ---~~L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l-- 511 (594)
++|++|++++|+++.. .+ ..+..+++|+.|++++|.+.... ....+|..+..+++|+.|+|++|.|
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g-----~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG-----IEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH-----HHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH-----HHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 5788888888887633 22 35667888888888886332110 0012334677788899999999998
Q ss_pred ---ccccccccCCCCCcEEEccCCCCcc-----cCcccc--CCCCCCEEECcCCCCCc-----cCccc-ccCCCCcEEEc
Q psy6452 512 ---NCIPEDIGNLICLEKLNISHNKVYK-----LPESFA--NLKSLKILDVSYNKLTM-----LPDGF-VMLSNLTTFYA 575 (594)
Q Consensus 512 ---~~ip~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~--~l~~L~~L~Ls~N~l~~-----ip~~l-~~l~~L~~L~L 575 (594)
..+|..+..+++|++|+|++|+|+. ++..+. .+++|++|+|++|+|+. +|..+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 4677778888999999999999884 455663 38899999999999986 77776 66899999999
Q ss_pred cCCCCcccC
Q psy6452 576 QRKYWMFLT 584 (594)
Q Consensus 576 ~~N~l~~l~ 584 (594)
++|+++...
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 999998777
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=204.57 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=153.6
Q ss_pred CCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccccCCCc
Q psy6452 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKH 338 (594)
Q Consensus 259 ~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L 338 (594)
+|++|+|++|.|++ +|..+ .++|++|+|++|.|+.+| ..+++|++|++++|.|+++|. +. .+|
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~--------~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP--------ASL 122 (571)
T ss_dssp TCSEEECCSSCCSC---CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC--------TTC
T ss_pred CccEEEeCCCCCCc---cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh--------cCC
Confidence 99999999999766 56554 378999999999999999 668999999999999999986 32 389
Q ss_pred ceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 339 SQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 339 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+.|++++|.|+.+|. .+++|+.|++++|.|++++. ..++|+.|++++|.+..+|. + . ++|+.|++++|
T Consensus 123 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l--~--~~L~~L~Ls~N- 190 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-L--P--ESLEALDVSTN- 190 (571)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-C--C--TTCCEEECCSS-
T ss_pred CEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-h--h--CCCCEEECcCC-
Confidence 999999999999987 57899999999999999876 56789999999998888877 3 1 45555555544
Q ss_pred CccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCC
Q psy6452 419 PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL 498 (594)
Q Consensus 419 ~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l 498 (594)
.++... . +.. +| ....
T Consensus 191 ---------------------------------~L~~lp-~-~~~--~L---------------------------~~~~ 206 (571)
T 3cvr_A 191 ---------------------------------LLESLP-A-VPV--RN---------------------------HHSE 206 (571)
T ss_dssp ---------------------------------CCSSCC-C-CC------------------------------------
T ss_pred ---------------------------------CCCchh-h-HHH--hh---------------------------hccc
Confidence 333111 1 110 00 0112
Q ss_pred CCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc-cCccccCCCC-------CCEEECcCCCCCcc
Q psy6452 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPESFANLKS-------LKILDVSYNKLTML 560 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~-------L~~L~Ls~N~l~~i 560 (594)
..|+.|+|++|.|+.||..+..+++|+.|+|++|.|+. +|..+..+.. -.++++++|++..+
T Consensus 207 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 276 (571)
T 3cvr_A 207 ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276 (571)
T ss_dssp -CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC--------
T ss_pred ccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeecccccccc
Confidence 35699999999999999998889999999999999984 4655544322 12345666665544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=203.82 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=79.5
Q ss_pred ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-----cccccc--CCCCCcEEEccCC
Q psy6452 460 QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-----IPEDIG--NLICLEKLNISHN 532 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~l~~L~~L~Ls~N 532 (594)
.+..+++|++|++++|.+... -...+|..+..+++|++|+|++|.|+. ++..+. .+++|++|+|++|
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHL------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHH------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HhhcCCCccEEECcCCCCCcH------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 566777788888887622110 025567777788899999999999883 466663 4899999999999
Q ss_pred CCcc-----cCccc-cCCCCCCEEECcCCCCCccC---cc-cccCCCCcEEEccC
Q psy6452 533 KVYK-----LPESF-ANLKSLKILDVSYNKLTMLP---DG-FVMLSNLTTFYAQR 577 (594)
Q Consensus 533 ~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~ip---~~-l~~l~~L~~L~L~~ 577 (594)
.|+. +|..+ ..+++|++|+|++|+++... .. ...+++++.+.+..
T Consensus 285 ~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 9996 77766 66899999999999999543 22 23445555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=179.81 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=139.0
Q ss_pred EEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 154 TRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
.+.+..+.++.+.... +++|++|++++|.++.++ . +..
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---------~--------------------------------~~~ 66 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---------G--------------------------------IQY 66 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT---------T--------------------------------GGG
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccCh---------h--------------------------------Hhc
Confidence 3345566666554444 888888888888887654 1 123
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|+|++|+++.+++ +..+++|++|++++|.++++ +. +..+++|++|++++|.++.++.+..+++|++|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---~~--l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL---SS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG---GG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC---hh--hccCCCCCEEECCCCcCCCChhhcCCCCCCEE
Confidence 6788888888888888877 77888888888888887663 32 56888888888888888888888888888888
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|++++++ .+ ...++|+.|++++|.+++++. +..+++|+.|++++|.+++++.....++|+.|++++|
T Consensus 140 ~l~~n~l~~~~-~l------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNKITDIT-VL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCG-GG------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred EccCCcCCcch-hh------ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 88888888773 22 223678888888888887776 5678888888888888887765455556777777776
Q ss_pred CCCCCCc
Q psy6452 393 IGMKIPE 399 (594)
Q Consensus 393 ~~~~ip~ 399 (594)
.+...|.
T Consensus 211 ~i~~~~~ 217 (291)
T 1h6t_A 211 ECLNKPI 217 (291)
T ss_dssp EEECCCE
T ss_pred cccCCcc
Confidence 6555444
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-21 Score=217.29 Aligned_cols=386 Identities=12% Similarity=0.026 Sum_probs=218.7
Q ss_pred ccCccEEecCCCCCcccChhh----hccCcEEEccCc-cccccccccccCCCCCccccCCCCcccccccccccccccccc
Q psy6452 149 TEALSTRTFCDHELQSIEDDI----LVQLECLHIDNN-KAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223 (594)
Q Consensus 149 ~~~L~~l~l~~n~l~~ip~~~----l~~L~~L~Ls~N-~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~ 223 (594)
..+|+.++++++.++...... +++|++|+|++| .++..........++.++..++ +.+.+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L--------------~~~~i~ 169 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL--------------RESDVD 169 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC--------------TTCEEE
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC--------------cCCccC
Confidence 446777888777665433222 467888888877 4443211111111111111111 111111
Q ss_pred c----ccccCccCCCcccEEEccCCCCcccchH----hhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCC
Q psy6452 224 T----ELNCCNKQYHDIFTVNLSHQDINFVQES----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295 (594)
Q Consensus 224 ~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N 295 (594)
. .+......+++|++|++++|. ..+... .+..+++|++|++++|. .+..++ ..+..+++|++|+++.+
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~l~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV--PLEKLA-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS--CHHHHH-HHHHHCTTCSEEECSBC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC--cHHHHH-HHHhcCCcceEcccccc
Confidence 1 111222345677777777776 222222 22445777777777762 133333 34456777777776554
Q ss_pred CC-------CCCC-CcCCCcCccEE-eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCC-ChhhhccCCCCcEE
Q psy6452 296 KL-------SELP-DFLNFKVLKEL-DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM-PLCLQVHFCKLVKL 365 (594)
Q Consensus 296 ~l-------~~lp-~~~~l~~L~~L-~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L 365 (594)
.. ..++ .+.++++|+.| .+.+.....++.... ..++|++|++++|.++.. ....+..+++|+.|
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~------~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS------VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH------HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH------hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 32 1222 35566677776 344433333433221 226899999999986632 22334578899999
Q ss_pred ECCCCCCCCCCCc---cccCCccEEeCCC---------CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcc
Q psy6452 366 DISHNQIKILHKP---RCTHTLQTFSMNH---------NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME 433 (594)
Q Consensus 366 ~Ls~N~l~~l~~~---~~~~~L~~L~L~~---------N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~ 433 (594)
++++| ++..... ...++|+.|++.+ +.++..........+++|+.|.++.++ +.+..+..+.
T Consensus 320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~---- 393 (594)
T 2p1m_B 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIA---- 393 (594)
T ss_dssp EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHH----
T ss_pred eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHH----
Confidence 99988 4321111 1246889998833 233222111112357889999776653 3332222221
Q ss_pred cccccccCCCcEEEcC--C----cccccc-----CccccccCCCcceEeCCCCcCcccccccccccccCcccccC-CCCC
Q psy6452 434 LKENGVFSNLISLHMQ--N----TAAVMS-----NVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSI 501 (594)
Q Consensus 434 ~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~-l~~L 501 (594)
..+++|+.|+++ + +.++.. .+..+..+++|+.|+++++ .....+..+.. +++|
T Consensus 394 ----~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-----------l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 394 ----RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-----------LTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ----HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-----------CCHHHHHHHHHHCTTC
T ss_pred ----hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-----------ccHHHHHHHHHhchhc
Confidence 235789999998 3 455522 1223677899999999773 22222233333 7899
Q ss_pred cEEeCccccCccc-ccc-ccCCCCCcEEEccCCCCccc--CccccCCCCCCEEECcCCCCCc-cCccc-ccCCCCcEEEc
Q psy6452 502 QELHLSNVQLNCI-PED-IGNLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTM-LPDGF-VMLSNLTTFYA 575 (594)
Q Consensus 502 ~~L~Ls~N~l~~i-p~~-~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~-ip~~l-~~l~~L~~L~L 575 (594)
+.|+|++|.++.. +.. ...+++|++|+|++|.++.. ......+++|++|++++|+++. -...+ ..+++|+...+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999732 223 36789999999999999732 2344568899999999999962 12223 56788877777
Q ss_pred cCCC
Q psy6452 576 QRKY 579 (594)
Q Consensus 576 ~~N~ 579 (594)
..+.
T Consensus 539 ~~~~ 542 (594)
T 2p1m_B 539 DERG 542 (594)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=188.13 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=150.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCcc-C
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNK-Q 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~-~ 232 (594)
.+++++++++.||..+...+++|+|++|+|+++++. .|. +
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~---------------------------------------~~~~~ 62 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE---------------------------------------WTPTR 62 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT---------------------------------------SSSSC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh---------------------------------------hhhhc
Confidence 577888999999998888999999999999987621 123 5
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+++..|.++++|++|+|++|+|+. +++..|..+++|++|+|++|+|+.++ .|.++++|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT---LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc---CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 7899999999999999999999999999999999999654 67788899999999999999999775 588999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC--CcEEECCCCCCCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK--LVKLDISHNQIKI 374 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~--L~~L~Ls~N~l~~ 374 (594)
+|+|++|+|+.+|..++... ...++|+.|+|++|+|+.++...|..++. ++.|+|++|.+.-
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCSCCGGGTC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCcCCeeCHHHhcCc--ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999999999987654210 22368999999999999999888888876 4889999998763
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=179.92 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=92.3
Q ss_pred CCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccc
Q psy6452 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439 (594)
Q Consensus 360 ~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~ 439 (594)
++|+.|++++|.++.++.....++|+.|++++|.+..++. +..+++|+.|++++|. ...+| .+..
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~--l~~~~----------~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK--VKDLS----------SLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC--CCCGG----------GGTT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc--CCCCh----------hhcc
Confidence 3444444444444433332233334444444443333333 2445555555555543 11111 1233
Q ss_pred cCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccccc
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIG 519 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 519 (594)
+++|++|++++|.+++. ..+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.|+.++. +.
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n-----------~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN-----------KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSS-----------CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCC-----------cCCcc-hhhccCCCCCEEEccCCccccchh-hc
Confidence 45566666666666553 34666677777777764 22233 345566677777777777766655 66
Q ss_pred CCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccC
Q psy6452 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip 561 (594)
.+++|++|+|++|+|+.++. +..+++|+.|++++|+++..|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 66777777777777766653 666667777777777666543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-20 Score=187.83 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCcccc--CchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCC
Q psy6452 285 TNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFES--MPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCK 361 (594)
Q Consensus 285 ~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~ 361 (594)
++++.|++++|.+...+ .+..+++|++|++++|.++. ++..+. ..++|++|++++|.++......+..+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~------~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS------QCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT------TBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh------hCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 44444444444444222 33445555555555555442 222111 1134444444444444322333345666
Q ss_pred CcEEECCCC-CCC
Q psy6452 362 LVKLDISHN-QIK 373 (594)
Q Consensus 362 L~~L~Ls~N-~l~ 373 (594)
|++|++++| .++
T Consensus 144 L~~L~L~~~~~l~ 156 (336)
T 2ast_B 144 LVRLNLSGCSGFS 156 (336)
T ss_dssp CSEEECTTCBSCC
T ss_pred CCEEECCCCCCCC
Confidence 666666666 444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=192.26 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=121.6
Q ss_pred EEecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 154 TRTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
.+.+.++.+..+.... +++|+.|++++|.+..++ . +..
T Consensus 25 ~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~---------~--------------------------------l~~ 63 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---------G--------------------------------IQY 63 (605)
T ss_dssp HHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT---------T--------------------------------GGG
T ss_pred HHhccCCCcccccchhcCCCCCEEECcCCCCCCCh---------H--------------------------------Hcc
Confidence 3444555555544443 677777777777766543 1 123
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|+.|+|++|+|+.+++ +..+++|++|+|++|.|+++ + .+..+++|++|+|++|.++.++.+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l---~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL---S--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC---T--TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC---h--hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 5677777777777777666 66777777777777776553 2 245677777777777777777667777777777
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
+|++|.++.++ .+ ...++|+.|+|++|.++.+++ +..+++|+.|+|++|+|++++....+++|+.|++++|
T Consensus 137 ~Ls~N~l~~l~-~l------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 137 YLGNNKITDIT-VL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ECCSSCCCCCG-GG------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred ECCCCccCCch-hh------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 77777777663 21 222567777777777776655 5567777777777777776654445556777777776
Q ss_pred CCCCCCc
Q psy6452 393 IGMKIPE 399 (594)
Q Consensus 393 ~~~~ip~ 399 (594)
.+...|.
T Consensus 208 ~l~~~p~ 214 (605)
T 1m9s_A 208 ECLNKPI 214 (605)
T ss_dssp EEECCCC
T ss_pred cCcCCcc
Confidence 5555544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=167.50 Aligned_cols=130 Identities=27% Similarity=0.348 Sum_probs=85.2
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.+|...+++|++|++++|+++++++ ..|..+
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~l 51 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPN---------------------------------------GVFDEL 51 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTTC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCCh---------------------------------------hhhccc
Confidence 45556667777776667777777777777775541 112345
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|++++|+|+.+++..|..+++|++|++++|++++ ++...|..+++|++|++++|+++.++. |..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS---LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc---cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 667777777777777776666677777777777777543 455556667777777777777776653 556666666
Q ss_pred EeccCCccccCchh
Q psy6452 312 LDISHNNFESMPLC 325 (594)
Q Consensus 312 L~Ls~N~l~~lp~~ 325 (594)
|++++|.+++++..
T Consensus 129 L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 129 LRLYQNQLKSVPDG 142 (208)
T ss_dssp EECCSSCCSCCCTT
T ss_pred EECCCCccceeCHH
Confidence 66666666665543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=165.44 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=82.3
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++++++.||..+.++|++|+|++|+|+++.+ ..|..+
T Consensus 23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~---------------------------------------~~~~~l 63 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP---------------------------------------GVFDSL 63 (229)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTTC
T ss_pred EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH---------------------------------------HHhhCc
Confidence 44555556666665555566666666666655431 112234
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKEL 312 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L 312 (594)
++|++|+|++|+|+.++...|..+++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+| .+..+++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~---- 136 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV---LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH---- 136 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT----
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc---cChhHhCcchhhCeEeccCCcccccCcccccCCC----
Confidence 455555555555555555555555555555555555333 33444445555555555555555444 3444444
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+.|+|++|+|+.++...|..+++|+.|++++|.+..
T Consensus 137 -------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 137 -------------------------LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -------------------------CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -------------------------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 4555555555555555555677788888888888764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=162.91 Aligned_cols=131 Identities=26% Similarity=0.310 Sum_probs=98.5
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEEe
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L~ 313 (594)
-+.++++++.++.++... .++|++|++++|++++ +++..|..+++|++|++++|+++.++. |..+++|++|+
T Consensus 9 ~~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCccCCCCCC---CCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 357788888888887643 4678888888888654 566677788888888888888887774 67888888888
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK 377 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 377 (594)
+++|.++.+|...+. ..++|++|++++|+++.++...|.++++|++|++++|++++++.
T Consensus 83 Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFD-----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCcCCccCHhHhc-----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 888888887754422 22577788888888877777777777788888888887776543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=163.78 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=103.5
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++++++.||..+.++|++|+|++|+|+++++ ..|..+
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~---------------------------------------~~~~~l 55 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPP---------------------------------------GAFSPY 55 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECT---------------------------------------TSSTTC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCH---------------------------------------hHhhCC
Confidence 45666777888887777778888888888776551 123446
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+. ++..+|..+++|++|+|++|+|+.++ .|..+++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE---LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc---cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 677777777777777777777777777777777777543 56666677777777777777777664 3666666666
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+|++|.|+.++ ...|..+++|+.|++++|.+..
T Consensus 133 L~L~~N~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 133 LSLYDNKLQTIA-----------------------------KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSSCCSCCC-----------------------------TTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcCCEEC-----------------------------HHHHhCCCCCCEEEeCCCCcCC
Confidence 666666666554 3344566777777777777654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=188.71 Aligned_cols=168 Identities=25% Similarity=0.262 Sum_probs=145.9
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccE
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~ 311 (594)
.+++|+.|++++|.|..++. +..+++|+.|+|++|.|+++ ++ +..+++|+.|+|++|.++.++.+..+++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~---~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI---KP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCC---GG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCC---hh--hccCCCCCEEECcCCCCCCChhhccCCCCCE
Confidence 46789999999999999975 78999999999999997774 33 6799999999999999999999999999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|+|++|.++.++. + ...++|+.|+|++|.++.+ ..+..+++|+.|+|++|.|+++.+...+++|+.|+|++
T Consensus 114 L~Ls~N~l~~l~~-l------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 114 LSLEHNGISDING-L------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp EECTTSCCCCCGG-G------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred EEecCCCCCCCcc-c------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 9999999998763 2 2336899999999999998 45679999999999999999987766677999999999
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
|.+..++. +..+++|+.|++++|+
T Consensus 185 N~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 NHISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp SCCCBCGG---GTTCTTCSEEECCSEE
T ss_pred CCCCCChH---HccCCCCCEEEccCCc
Confidence 98888864 4678889999998875
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=170.60 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+++|++|+|++|+|+.+++ |..+++|++|++++|+++++. .. .. ++|++|+|++|+++.++.+..+++|++|
T Consensus 62 l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~---~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT---TC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcC---cc--cc-CcccEEEccCCccCCChhhcCcccccEE
Confidence 3455555555555555554 455555555555555544422 11 11 5555555555555555555555555555
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
++++|++++++ .+ ...++|+.|++++|+++++ ..+..+++|+.|++++|.++.
T Consensus 134 ~Ls~N~i~~~~-~l------~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 134 SIRNNKLKSIV-ML------GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECTTSCCCBCG-GG------GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ECCCCcCCCCh-HH------ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 55555555543 11 1113455555555555444 223344455555555554443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=170.39 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=149.8
Q ss_pred ChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCC
Q psy6452 166 EDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQD 245 (594)
Q Consensus 166 p~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 245 (594)
|...+.+++.+++++|.++++.. +..+++|++|++++|+
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~-----------------------------------------~~~l~~L~~L~l~~n~ 52 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVS-----------------------------------------QKELSGVQNFNGDNSN 52 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC-----------------------------------------HHHHTTCSEEECTTSC
T ss_pred CCHHHHHHHHHHhcCCCcccccc-----------------------------------------hhhcCcCcEEECcCCC
Confidence 33337778888899888887641 1346889999999999
Q ss_pred CcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchh
Q psy6452 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLC 325 (594)
Q Consensus 246 l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~ 325 (594)
|+.++ .+..+++|++|+|++|+++++ ++ +..+++|++|+|++|+++.+|.+.. ++|++|++++|++++++.
T Consensus 53 i~~l~--~l~~l~~L~~L~L~~N~i~~~---~~--l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~- 123 (263)
T 1xeu_A 53 IQSLA--GMQFFTNLKELHLSHNQISDL---SP--LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS- 123 (263)
T ss_dssp CCCCT--TGGGCTTCCEEECCSSCCCCC---GG--GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-
T ss_pred cccch--HHhhCCCCCEEECCCCccCCC---hh--hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-
Confidence 99988 478999999999999997764 44 6899999999999999999998777 999999999999999863
Q ss_pred hhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchh
Q psy6452 326 LQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401 (594)
Q Consensus 326 ~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~ 401 (594)
+ ...++|+.|++++|++++++ .+..+++|+.|++++|+++++......++|+.|++++|.+...|...
T Consensus 124 l------~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 124 L------IHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp G------TTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred h------cCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCcccc
Confidence 2 23379999999999999986 46789999999999999999866666789999999999887776543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=160.59 Aligned_cols=152 Identities=21% Similarity=0.208 Sum_probs=117.1
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L 312 (594)
..+.+++++++++.+|... .++|++|+|++|.|++ +++..|..+++|++|+|++|+|+.+|. |..+++|++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567888888888887644 3778888888888655 445666788888888888888887773 6778888888
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMN 390 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~ 390 (594)
+|++|+|+.++...+.. .++|+.|++++|+|+.+|..+ ..+++|++|+|++|+|+.++...+ .++|+.|+++
T Consensus 94 ~Ls~N~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDR-----LVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCccChhHhCc-----chhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 88888888877654322 267888888888888887665 589999999999999999886544 4699999999
Q ss_pred CCCCCCCC
Q psy6452 391 HNIGMKIP 398 (594)
Q Consensus 391 ~N~~~~ip 398 (594)
+|.+..-.
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 99766443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=160.20 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=120.2
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEe
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~ 313 (594)
-+.+++++++++.+|.... ++|++|++++|+|++ +++..|..+++|++|+|++|+|+.++ .|.++++|++|+
T Consensus 13 ~~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CCEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCC---cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 3578888888888876543 678888888888544 56667778888888888888888663 577888888888
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc--cCCccEEeCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC--THTLQTFSMNH 391 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~~L~~L~L~~ 391 (594)
|++|.|+.+|...+.. ..+|+.|+|++|+++.+++..|.++++|++|+|++|+|++++...+ .++|+.|++++
T Consensus 87 Ls~N~l~~l~~~~f~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 87 LYGNKITELPKSLFEG-----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCccCHhHccC-----CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 8888888887765432 2688888888888888888888899999999999999999987644 46899999999
Q ss_pred CCCCCCC
Q psy6452 392 NIGMKIP 398 (594)
Q Consensus 392 N~~~~ip 398 (594)
|.+....
T Consensus 162 N~~~c~c 168 (220)
T 2v9t_B 162 NPFICDC 168 (220)
T ss_dssp SCEECSG
T ss_pred CCcCCCC
Confidence 9765433
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=160.43 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=108.9
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++|.++.||..+...+++|+|++|+|+++.+. ..|..+
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~--------------------------------------~~~~~l 56 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEAT--------------------------------------GIFKKL 56 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCC--------------------------------------CCGGGC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCch--------------------------------------hhhccC
Confidence 567778888888877777788888888888876411 112446
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|++++ +++..|..+++|++|+|++|+|+.++ .|..+++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 778888888888888887777888888888888888554 55666777888888888888877664 3667777777
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
|+|++|++++++ +..|..+++|+.|++++|.+..
T Consensus 134 L~L~~N~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 134 LSLYDNQITTVA-----------------------------PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EECTTSCCCCBC-----------------------------TTTTTTCTTCCEEECCSCCEEC
T ss_pred EECCCCcCCEEC-----------------------------HHHhcCCCCCCEEEecCcCCcC
Confidence 777777776653 2334466777778888777764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-18 Score=175.09 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=70.7
Q ss_pred CCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCC-EEECcCCCCCccCcc-cccCCCCcEE
Q psy6452 498 LSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLK-ILDVSYNKLTMLPDG-FVMLSNLTTF 573 (594)
Q Consensus 498 l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~-~L~Ls~N~l~~ip~~-l~~l~~L~~L 573 (594)
+++|+.|+|++|+++.||+. |.++++|+.|+|++| ++.|+. +|.++++|+ .+++.+ .++.|++. |.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 56777777777777777765 777777777777776 777755 777777777 777777 67777544 7777778877
Q ss_pred EccCCCCcccCHhHHhhhhCC
Q psy6452 574 YAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 574 ~L~~N~l~~l~~~~~~~l~~L 594 (594)
++++|.++.|+..+|.++.+|
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCC
T ss_pred EeCCCccCccchhhhcCCcch
Confidence 777777777777777776654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=173.65 Aligned_cols=171 Identities=25% Similarity=0.242 Sum_probs=138.3
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhh-cCCCCCEEEcCCCCCCCCC--CcCCCcCccEE
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ-KLTNLIVLDLSHNKLSELP--DFLNFKVLKEL 312 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~-~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L 312 (594)
-+.+++++++++.+|...+ +.+++|+|++|+|++ ++...|. .+++|++|+|++|+|+.++ .|.++++|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCccCC---CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 4688999999999887543 568899999998554 6667776 8899999999999999776 48889999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc-----cCCccEE
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC-----THTLQTF 387 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-----~~~L~~L 387 (594)
+|++|+|+.++...+.. ..+|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.++...+ .++|+.|
T Consensus 94 ~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSD-----LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp ECCSSCCCEECTTTTTT-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred ECCCCcCCcCCHHHhCC-----CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 99999999887654332 2689999999999998888888899999999999999998876654 5689999
Q ss_pred eCCCCCCCCCCchhhhcccCc--ccEEECcCCC
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLC--LKELNMSSTD 418 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~--L~~L~Ls~n~ 418 (594)
++++|.+..+|... +..++. ++.|++++|.
T Consensus 169 ~L~~N~l~~l~~~~-~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNKLKKLPLTD-LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred ECCCCCCCccCHHH-hhhccHhhcceEEecCCC
Confidence 99999888888654 456665 4788998875
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-18 Score=172.28 Aligned_cols=254 Identities=17% Similarity=0.110 Sum_probs=187.9
Q ss_pred cCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC--C-CccccCC
Q psy6452 307 KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL--H-KPRCTHT 383 (594)
Q Consensus 307 ~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~-~~~~~~~ 383 (594)
..++.+++++|.+. +..+... ...+++.|++++|.+.+.....+ .+++|++|++++|.++.. + .....++
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~----~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRL----LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHH----HHTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCC--HHHHHhh----hhccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 34889999999887 2222211 12589999999999998877765 789999999999998753 2 1234579
Q ss_pred ccEEeCCCCCCCC-CCchhhhcccCcccEEECcCCCCccC-CccHHHhhhcccccccccCCCcEEEcCCc-ccccc-Ccc
Q psy6452 384 LQTFSMNHNIGMK-IPEWFWYQEFLCLKELNMSSTDPFFE-HLPIWLLNHMELKENGVFSNLISLHMQNT-AAVMS-NVS 459 (594)
Q Consensus 384 L~~L~L~~N~~~~-ip~~~~~~~~~~L~~L~Ls~n~~~~~-~lp~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~ 459 (594)
|++|++++|.+.. .+.. +..+++|+.|++++|..+.+ .++..+ ..+++|++|++++| .+++. .+.
T Consensus 120 L~~L~L~~~~l~~~~~~~--l~~~~~L~~L~L~~~~~l~~~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTLL---------SSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp CSEEECTTCBCCHHHHHH--HTTCTTCSEEECTTCBSCCHHHHHHHH---------HHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CCEEeCcCcccCHHHHHH--HhcCCCCCEEECCCCCCCCHHHHHHHH---------hcCCCCCEEcCCCCCCcChHHHHH
Confidence 9999999997663 3333 36799999999999843443 244322 34679999999999 88865 466
Q ss_pred ccccCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcccc-Cc-cccccccCCCCCcEEEccCCC-Cc
Q psy6452 460 QLKYLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ-LN-CIPEDIGNLICLEKLNISHNK-VY 535 (594)
Q Consensus 460 ~~~~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~-l~-~ip~~~~~l~~L~~L~Ls~N~-l~ 535 (594)
.+..++ +|++|++++|..... -+.+|..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred HHHhcccCCCEEEeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 688899 999999999721100 04556677788999999999999 66 566778999999999999995 33
Q ss_pred cc-CccccCCCCCCEEECcCCCCCccCcccccC-CCCcEEEccCCCCcccCHhHH
Q psy6452 536 KL-PESFANLKSLKILDVSYNKLTMLPDGFVML-SNLTTFYAQRKYWMFLTISLL 588 (594)
Q Consensus 536 ~l-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l-~~L~~L~L~~N~l~~l~~~~~ 588 (594)
.- ...+..+++|+.|++++| ++. ..+..+ .+|+.|++++|+++.+.+..+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 11 125788999999999999 432 124444 347778899999998776544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-20 Score=203.09 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=60.1
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
|+.|++++|.+++. |. +..+++|+.|++++| .+..+|..++.+++|+.|+|++|.|+.+| .+..++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHN-----------RLRALPPALAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSS-----------CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCcc-----------cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 44555555555443 22 555555555555553 23345555555555555555555555554 455555
Q ss_pred CCcEEEccCCCCccc--CccccCCCCCCEEECcCCCCCccCccc----ccCCCCcEEE
Q psy6452 523 CLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDGF----VMLSNLTTFY 574 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~ip~~l----~~l~~L~~L~ 574 (594)
+|++|+|++|+|+.+ |..+..+++|+.|+|++|+|+.+|... ..+++|+.|+
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 555555555555544 445555555555555555555443322 2245555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=156.43 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=45.4
Q ss_pred cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCccc-CccccCCCCCCEEECcCCCCCcc-CcccccCCCC
Q psy6452 494 SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML-PDGFVMLSNL 570 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L 570 (594)
.|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+ |..|..+++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 344455555555555555544433 45555555555555555544 33455555555555555555544 3335555555
Q ss_pred cEEEccCCCCc
Q psy6452 571 TTFYAQRKYWM 581 (594)
Q Consensus 571 ~~L~L~~N~l~ 581 (594)
++|+|++|+|+
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 55555555554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=152.23 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=94.5
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccccc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPEDIG 519 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 519 (594)
++|++|++++|.++. +..+..+++|++|++++| ...+..|..+..+++|++|++++|.++. .|..+.
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n----------~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGK----------DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECT----------TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECC----------ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 344444454443332 235667777777887776 3334456667778889999999998884 566788
Q ss_pred CCCCCcEEEccCCC-CcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcc
Q psy6452 520 NLICLEKLNISHNK-VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 520 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
.+++|++|+|++|+ ++.+| .+..+++|++|++++|+|+.++ .+..+++|++|++++|+|..
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 89999999999998 88886 5888899999999999999886 68888999999999998764
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=149.82 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=111.8
Q ss_pred ccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhccccc
Q psy6452 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436 (594)
Q Consensus 357 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~ 436 (594)
..+++|+.|++++|.++.++.....++|++|++++|.+..++ .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-------------------------------------~ 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-------------------------------------P 83 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-------------------------------------G
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-------------------------------------h
Confidence 356677888888887776553333344444444444333222 2
Q ss_pred ccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCcccc-Ccccc
Q psy6452 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ-LNCIP 515 (594)
Q Consensus 437 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip 515 (594)
+..+++|++|++++|.+++..+..+..+++|++|++++| ...+..|..+..+++|++|++++|. ++.+|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n----------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS----------AHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS----------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC----------ccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 234567777777777777777778888899999999987 4444567778888999999999997 88887
Q ss_pred ccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCc
Q psy6452 516 EDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559 (594)
Q Consensus 516 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 559 (594)
.+..+++|++|++++|+++.++ .+..+++|++|++++|+|..
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 5888999999999999999887 68889999999999998863
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=160.59 Aligned_cols=265 Identities=10% Similarity=0.127 Sum_probs=182.4
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
..++.+.+.. .++.|+..+|.++ +|+.+.+..+ +..++..+|.+ .+|+.+.+.. .++.++ .|.++++|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 5667777754 6888888888875 7999998876 44577788877 4799999985 677666 5888899999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
+++++|.++.++...+.. .+|+.+.+.. .++.|+..+|.++++|+.+++..| ++.+...+|..
T Consensus 185 l~l~~n~l~~I~~~aF~~------~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--------- 247 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVY------AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--------- 247 (401)
T ss_dssp EECTTSCCSEECTTTTTT------CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---------
T ss_pred eecCCCcceEechhhEee------cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc---------
Confidence 999999999888776542 5788888874 488888889989999999998864 55554444321
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
.+|+.+.+.+ .++.+...+|.++++|+.++
T Consensus 248 ---------------~~L~~i~lp~-----------------------------------~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 248 ---------------SGITTVKLPN-----------------------------------GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp ---------------CCCSEEEEET-----------------------------------TCCEECTTTTTTCTTCCEEE
T ss_pred ---------------CCccEEEeCC-----------------------------------CccEEChhHhhCCCCCCEEE
Confidence 2233333321 22233334455555555555
Q ss_pred CCCCcCcccccccccccccC-cccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCC
Q psy6452 472 CSNDIDHRKSQDFVNVLWEL-PLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLK 548 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~ 548 (594)
+.+|.... +....+ +.+|.++++|+.++|. +.++.|+.. |.++++|+.+.|..| ++.|.. +|.++ +|+
T Consensus 278 l~~~~~~~------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 278 TYGSTFND------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp EESSCCCC------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred eCCccccC------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 55432110 011122 2356677788888888 457777664 888888888888554 777754 78888 889
Q ss_pred EEECcCCCCCccCcc-cccCC-CCcEEEccCCCCcc
Q psy6452 549 ILDVSYNKLTMLPDG-FVMLS-NLTTFYAQRKYWMF 582 (594)
Q Consensus 549 ~L~Ls~N~l~~ip~~-l~~l~-~L~~L~L~~N~l~~ 582 (594)
.+++++|.+..++.. |..++ +++.|++..+.+..
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 999988888877655 77774 77888887776543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=163.87 Aligned_cols=286 Identities=14% Similarity=0.090 Sum_probs=171.7
Q ss_pred CCcccEEEccCCCCcccchHhhhc-CCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCC------
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQK-LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN------ 305 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~-l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------ 305 (594)
+.+++.|.++++ +....-..+.. +++|++|||++|++... ....+ .++.++.+.+..|.|.. ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~---~~~~~~~~~~~~~~I~~-~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAG---TYPNGKFYIYMANFVPA-YAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSS---SSGGGCCEEECTTEECT-TTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEe-cCccc---cccccccccccccccCH-HHhcccccccc
Confidence 456788888764 33222233344 77888888888886521 12222 22224555555553321 13566
Q ss_pred --CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCC----CCCCCcc
Q psy6452 306 --FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQI----KILHKPR 379 (594)
Q Consensus 306 --l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~ 379 (594)
+++|+.|+|.+ .++.|+...+... .+|+.+++++|.+..|+..+|.++.++..+.+..+.. ..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~-----~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGC-----DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTC-----TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcC-----cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 77777777777 7777776655332 5777788887777777778887777777776665321 1122111
Q ss_pred ccCCccEEeCCCCCCCCCCchhhhcccCccc-EEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCc
Q psy6452 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK-ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458 (594)
Q Consensus 380 ~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~-~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 458 (594)
|..+..|+ .+.+.. .+.++..+... .....++..+.+.++-......
T Consensus 172 -----------------------f~~~~~L~~~i~~~~----~~~l~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~ 219 (329)
T 3sb4_A 172 -----------------------FIEGEPLETTIQVGA----MGKLEDEIMKA-----GLQPRDINFLTIEGKLDNADFK 219 (329)
T ss_dssp -----------------------EEESCCCEEEEEECT----TCCHHHHHHHT-----TCCGGGCSEEEEEECCCHHHHH
T ss_pred -----------------------cccccccceeEEecC----CCcHHHHHhhc-----ccCccccceEEEeeeecHHHHH
Confidence 22333333 333332 22233322211 0112244444444332111111
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcc-cccCCCCCcEEeCccccCcccccc-ccCCCCCc-EEEccCCCCc
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL-SILYLSSIQELHLSNVQLNCIPED-IGNLICLE-KLNISHNKVY 535 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~-~L~Ls~N~l~ 535 (594)
.....+++|+.+++++| .+..+|. +|.++++|+.|+|.+| ++.|+.. |.++++|+ .+++.+ +++
T Consensus 220 ~l~~~~~~L~~l~L~~n-----------~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 220 LIRDYMPNLVSLDISKT-----------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp HHHHHCTTCCEEECTTB-----------CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred HHHHhcCCCeEEECCCC-----------CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 11123677777777774 3445553 4667788888888887 8888765 88888898 899988 788
Q ss_pred ccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEc
Q psy6452 536 KLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYA 575 (594)
Q Consensus 536 ~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L 575 (594)
.|+. +|.++++|+.|++++|+++.|+.. |.++++|+.++.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8854 888899999999988999988765 888888888864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-18 Score=187.31 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=107.8
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
|..+.+.+|.++...+ ..|+.|++++| .+..+|. +..+++|+.|+|++|.|+.+|..++.++
T Consensus 425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n-----------~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY------ADVRVLHLAHK-----------DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEECTTS-----------CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred hhhhhhhcccccccCc------cCceEEEecCC-----------CCCCCcC-ccccccCcEeecCcccccccchhhhcCC
Confidence 3344444455544322 25899999995 5566886 9999999999999999999999999999
Q ss_pred CCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCcc--CcccccCCCCcEEEccCCCCcccCHh
Q psy6452 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML--PDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~i--p~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+|+.|+|++|+|+.+| .+..+++|++|+|++|+|+.+ |..+..+++|+.|+|++|+++.+|+.
T Consensus 487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999998 899999999999999999987 88899999999999999999998764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=145.07 Aligned_cols=135 Identities=23% Similarity=0.190 Sum_probs=116.3
Q ss_pred cCCCcEEEcCCcccc-ccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccc
Q psy6452 440 FSNLISLHMQNTAAV-MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPED 517 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~ 517 (594)
.++|+.|++++|.++ +..+..+..+++|++|++++| .+..+ ..+..+++|++|+|++|.++. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-----------~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-----------GLISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-----------CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-----------CCCCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 468889999999887 566777888999999999996 34444 577888999999999999997 7777
Q ss_pred ccCCCCCcEEEccCCCCcccC--ccccCCCCCCEEECcCCCCCccCc----ccccCCCCcEEEccCCCCcccCHh
Q psy6452 518 IGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD----GFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+..+++|++|+|++|+|+.+| ..+..+++|++|++++|+++.+|. .+..+++|++|++++|.+..+|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 778999999999999999886 688999999999999999998877 688999999999999999988753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=179.03 Aligned_cols=120 Identities=24% Similarity=0.242 Sum_probs=63.5
Q ss_pred ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc
Q psy6452 458 VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 458 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
+..+..+..|+.|+|++| .+..+|..++.+++|++|+|++|.|+.+|..|..+++|++|+|++|+|+.|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-----------QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -----CCCCCCEEECTTS-----------CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred hhhhccCCCCcEEECCCC-----------CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 344455555555555553 233455555555555555555555555555555555555555555555555
Q ss_pred CccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHH
Q psy6452 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLL 588 (594)
Q Consensus 538 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~ 588 (594)
|..|..+++|++|+|++|.|+.||..|..+++|++|+|++|+|+..++..+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555555555555555555555555555555555555555555444444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=179.98 Aligned_cols=115 Identities=25% Similarity=0.310 Sum_probs=59.1
Q ss_pred hHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-CcCCCcCccEEeccCCccccCchhhhhc
Q psy6452 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVH 329 (594)
Q Consensus 251 ~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 329 (594)
+..|..++.|+.|+|++|.+.. ++..++ .+++|++|+|++|.|+.+| .|.++++|++|+|++|.|+.+|..+...
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~---l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN---ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC---CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCCC---CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 3444555555555555555332 344443 5555555555555555555 3555555555555555555555443322
Q ss_pred cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 330 FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 330 ~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
.+|++|+|++|.|+.+|.. |..+++|++|+|++|.|++..
T Consensus 293 ------~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 293 ------FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp ------TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHH
T ss_pred ------CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCC
Confidence 3555555555555555544 445666666666666665543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=154.60 Aligned_cols=249 Identities=12% Similarity=0.139 Sum_probs=166.7
Q ss_pred hhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhccc
Q psy6452 254 SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFY 331 (594)
Q Consensus 254 f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 331 (594)
+..+..++.+.+..+ +..++..+|.+. +|+.+.+..+ ++.|+ .|.+ .+|+.+.+.. .++.|+.
T Consensus 109 ~~~~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~------- 173 (401)
T 4fdw_A 109 TEILKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE------- 173 (401)
T ss_dssp EEECSSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS-------
T ss_pred EEecCCccEEEECCc----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH-------
Confidence 345577788887753 445677777764 6888887765 66555 3555 3566666654 4444443
Q ss_pred cccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc-CCccEEeCCCCCCCCCCchhhhcccCccc
Q psy6452 332 VHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT-HTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410 (594)
Q Consensus 332 ~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~L~~N~~~~ip~~~~~~~~~~L~ 410 (594)
.+|.++++|+.+++++|.++.++...|. .+|+.+.+..+ +..|+... |..+++|+
T Consensus 174 ----------------------~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a-F~~~~~L~ 229 (401)
T 4fdw_A 174 ----------------------DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQA-FLKTSQLK 229 (401)
T ss_dssp ----------------------STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTT-TTTCTTCC
T ss_pred ----------------------HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhH-hhCCCCCC
Confidence 3444555555555555555544433332 23344443322 33333333 34555555
Q ss_pred EEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCccccccccccccc
Q psy6452 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490 (594)
Q Consensus 411 ~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ 490 (594)
.+++..+ ++.+...+|.+ .+|+.+.+.++ +..
T Consensus 230 ~l~l~~~-----------------------------------l~~I~~~aF~~-~~L~~i~lp~~------------i~~ 261 (401)
T 4fdw_A 230 TIEIPEN-----------------------------------VSTIGQEAFRE-SGITTVKLPNG------------VTN 261 (401)
T ss_dssp CEECCTT-----------------------------------CCEECTTTTTT-CCCSEEEEETT------------CCE
T ss_pred EEecCCC-----------------------------------ccCcccccccc-CCccEEEeCCC------------ccE
Confidence 5555442 33344566666 67888888653 334
Q ss_pred C-cccccCCCCCcEEeCccccCc-----ccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCc
Q psy6452 491 L-PLSILYLSSIQELHLSNVQLN-----CIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPD 562 (594)
Q Consensus 491 i-p~~~~~l~~L~~L~Ls~N~l~-----~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~ 562 (594)
+ +.+|.++++|+.+++.+|.+. .|+.. |.++++|+.++|. +.++.|+. +|.++++|+.+.|..| ++.|+.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 4 356778999999999998876 67654 9999999999999 56999966 8999999999999654 888865
Q ss_pred c-cccCCCCcEEEccCCCCcccCHhHHhhhh
Q psy6452 563 G-FVMLSNLTTFYAQRKYWMFLTISLLCYLM 592 (594)
Q Consensus 563 ~-l~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 592 (594)
. |..+ +|+.+++.+|.+..++...|.++.
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 5 9999 999999999999999988887653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-15 Score=153.38 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred cccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCC
Q psy6452 494 SILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNL 570 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L 570 (594)
.+..+.+|+.+.+..+ ++.|++. |.++.+|+.++|.++ ++.|.. +|.++.+|+.+++..| ++.|+.. |.++++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445566666666543 5555443 666666666666533 666643 6666666666666654 6655443 6666666
Q ss_pred cEEEccCCCCccc
Q psy6452 571 TTFYAQRKYWMFL 583 (594)
Q Consensus 571 ~~L~L~~N~l~~l 583 (594)
+.+++..+ ++.+
T Consensus 369 ~~i~lp~~-~~~~ 380 (394)
T 4fs7_A 369 KKVELPKR-LEQY 380 (394)
T ss_dssp CEEEEEGG-GGGG
T ss_pred CEEEECCC-CEEh
Confidence 66666543 3434
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=137.59 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=106.9
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++++++.+|...+++|++|++++|+++++++ ..|..
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~---------------------------------------~~~~~ 50 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH---------------------------------------GVFDK 50 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCT---------------------------------------TTTTT
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCH---------------------------------------HHhcC
Confidence 367778888999998778899999999999887651 12245
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
+++|++|++++|+|+.+++..|..+++|++|++++|++++ +++..+..+++|++|++++|.++.+|. |..+++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc---cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 6789999999999999988888889999999999999665 566777888999999999999998874 67789999
Q ss_pred EEeccCCccccCch
Q psy6452 311 ELDISHNNFESMPL 324 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~ 324 (594)
+|++++|.++..++
T Consensus 128 ~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 128 KIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCeeccCc
Confidence 99999998886443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=141.03 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=107.6
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.+++++++++.||..++++|++|+|++|+|+.++ ..|..+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip----------------------------------------~~~~~l 53 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP----------------------------------------KELSNY 53 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC----------------------------------------GGGGGC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH----------------------------------------HHhhcc
Confidence 6778889999999888889999999999998654 122457
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|.|+.+|. |..+++|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~---i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC---IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE---eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 889999999999999999889999999999999999655 667778899999999999999998884 778999999
Q ss_pred EeccCCcccc
Q psy6452 312 LDISHNNFES 321 (594)
Q Consensus 312 L~Ls~N~l~~ 321 (594)
|++++|.+..
T Consensus 131 L~L~~N~~~C 140 (193)
T 2wfh_A 131 LAIGANPLYC 140 (193)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCeec
Confidence 9999998874
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=139.49 Aligned_cols=128 Identities=19% Similarity=0.303 Sum_probs=107.6
Q ss_pred cEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccC
Q psy6452 153 STRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232 (594)
Q Consensus 153 ~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~ 232 (594)
+.+++++|+++.||..+..+|++|++++|+|+++++. ..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--------------------------------------~~~~~ 52 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD--------------------------------------GLFGR 52 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS--------------------------------------CSGGG
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc--------------------------------------ccccc
Confidence 3678889999999988888999999999999887621 11245
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCC-C-CcCCCcCcc
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL-P-DFLNFKVLK 310 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~l~~L~ 310 (594)
+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+ | .|..+++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE---ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE---ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 7889999999999999988888999999999999999655 6667778899999999999999965 3 477889999
Q ss_pred EEeccCCcccc
Q psy6452 311 ELDISHNNFES 321 (594)
Q Consensus 311 ~L~Ls~N~l~~ 321 (594)
+|++++|.++.
T Consensus 130 ~L~L~~N~l~c 140 (192)
T 1w8a_A 130 SLNLASNPFNC 140 (192)
T ss_dssp EEECTTCCBCC
T ss_pred EEEeCCCCccC
Confidence 99999999885
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.99 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=110.2
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccEE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~L 312 (594)
..+.+++++++++.+|... .++|++|++++|++++ +++..|..+++|++|++++|.++.++. |..+++|++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 4678999999999998654 3789999999999665 667778899999999999999998884 7899999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 374 (594)
++++|.++++|...+. ..++|++|++++|.++.++...|..+++|++|++++|.++.
T Consensus 82 ~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFD-----KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhh-----CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999999998865432 22689999999999999998888889999999999998875
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-15 Score=137.64 Aligned_cols=125 Identities=20% Similarity=0.318 Sum_probs=96.0
Q ss_pred cEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCC
Q psy6452 444 ISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLI 522 (594)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~ 522 (594)
+.++++++.++..... + .++|+.|++++| .+..+|..+..+++|+.|+|++|.|+.++. .|.+++
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n-----------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGN-----------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSS-----------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCC-----------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 4556666666544322 2 246788888874 455777778888888888888888887765 488888
Q ss_pred CCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 523 CLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 523 ~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+|++|+|++|+|+.++. .|..+++|++|+|++|+|+.+|.. |..+++|+.|+|++|+|..
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888888888888855 788888888888888888888775 7888888888888888864
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=135.63 Aligned_cols=126 Identities=24% Similarity=0.264 Sum_probs=93.1
Q ss_pred cCCCcEEEcCCcccc-ccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-cccc
Q psy6452 440 FSNLISLHMQNTAAV-MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPED 517 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~ 517 (594)
.++++.|++++|.++ +..+..+..+++|++|++++| .+..+ ..+..+++|++|++++|.|+. +|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----------~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----------GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----------CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----------CCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 357778888888777 566667777888888888875 23333 456677788888888888886 6666
Q ss_pred ccCCCCCcEEEccCCCCcccC--ccccCCCCCCEEECcCCCCCccCc----ccccCCCCcEEEccC
Q psy6452 518 IGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD----GFVMLSNLTTFYAQR 577 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l~~L~~L~L~~ 577 (594)
+..+++|++|++++|+++.++ ..+..+++|++|++++|+++.+|. .+..+++|++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777788888888888888764 567778888888888888887765 477788888887763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=132.97 Aligned_cols=121 Identities=24% Similarity=0.161 Sum_probs=107.4
Q ss_pred cCCCcceEeCCCCcCccccccccccc-ccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcc-cCcc
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPES 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~-~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~-lp~~ 540 (594)
..++|+.|++++| ... +.+|..+..+++|+.|++++|.|+.+ ..+..+++|++|+|++|+++. +|..
T Consensus 15 ~~~~l~~L~l~~n----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNS----------RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTC----------BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCC----------cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 3478999999997 333 47888889999999999999999988 679999999999999999998 7777
Q ss_pred ccCCCCCCEEECcCCCCCccC--cccccCCCCcEEEccCCCCcccCH---hHHhhhhCC
Q psy6452 541 FANLKSLKILDVSYNKLTMLP--DGFVMLSNLTTFYAQRKYWMFLTI---SLLCYLMGL 594 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip--~~l~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L 594 (594)
+..+++|++|++++|+|+.+| ..+..+++|++|++++|+++.++. ..+..+.+|
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 888999999999999999875 679999999999999999999998 678777664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=135.08 Aligned_cols=111 Identities=28% Similarity=0.335 Sum_probs=87.5
Q ss_pred CCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccc--ccc
Q psy6452 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP--EDI 518 (594)
Q Consensus 441 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip--~~~ 518 (594)
++|+.|++++|.++.. ..+..+++|++|++++| ...+.+|..+..+++|++|+|++|.|+.+| ..+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN----------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC----------CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC----------cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 3455555555555544 56677788888888886 333336666667899999999999999876 568
Q ss_pred cCCCCCcEEEccCCCCcccCc----cccCCCCCCEEECcCCCCCccCcc
Q psy6452 519 GNLICLEKLNISHNKVYKLPE----SFANLKSLKILDVSYNKLTMLPDG 563 (594)
Q Consensus 519 ~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~~ip~~ 563 (594)
..+++|++|++++|.++.+|. .+..+++|++|++++|.+.++|++
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999999999998876 788999999999999999988875
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=145.03 Aligned_cols=303 Identities=9% Similarity=0.076 Sum_probs=184.1
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC-----
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP----- 301 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp----- 301 (594)
..+|.++.+|+++.+.. .++.|+..+|.++++|+.+++..+ +..+...+|.++.+|+.+.+..+ +..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 45677778888888864 488888888888888888888754 33466777777777777666543 22111
Q ss_pred -------------------CcCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCC
Q psy6452 302 -------------------DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKL 362 (594)
Q Consensus 302 -------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L 362 (594)
.|.++++|+.+.+.++ ++.++...+.. ..+|+.+++..+ ++.|...+|.++..|
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~-----c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSG-----CGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----CTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccC-----CCCceEEEcCCC-ceEeCchhhcccccc
Confidence 2455566666666543 23344333321 145555555544 555556666666666
Q ss_pred cEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCC
Q psy6452 363 VKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442 (594)
Q Consensus 363 ~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~ 442 (594)
+.+.+..+...--.......+|+.+.+... ...+.... +..+..++.+.+..+. .......+..+..
T Consensus 211 ~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~-f~~~~~l~~~~~~~~~-----------~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 211 ENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSV-FYGCTDLESISIQNNK-----------LRIGGSLFYNCSG 277 (394)
T ss_dssp CBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSST-TTTCSSCCEEEECCTT-----------CEECSCTTTTCTT
T ss_pred ceeecCCCceEeehhhcccCCCceEEECCC-ceeccccc-ccccccceeEEcCCCc-----------ceeeccccccccc
Confidence 666555443221111111235555555433 22333333 3556666666665532 1112223344556
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGN 520 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~ 520 (594)
++.+......+ ....|..+.+|+.+.+.++ +..++ .+|.++.+|+.++|..+ ++.|... |.+
T Consensus 278 l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 278 LKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp CCEEEECSSEE---CTTTTTTCTTCCEEEECTT------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred cceeccCceee---ccccccccccccccccccc------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 66666655432 3345677788888877653 22332 35677888999998754 7788654 888
Q ss_pred CCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcccccCCCCcEE
Q psy6452 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTF 573 (594)
Q Consensus 521 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L 573 (594)
+.+|+.+++..| ++.|.. +|.++.+|+.+++..+ ++.+...|.++++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 999999999876 888855 8889999999998754 56565668888888765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=134.63 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=48.1
Q ss_pred ccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCcc-CcccccCCCCc
Q psy6452 495 ILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTML-PDGFVMLSNLT 571 (594)
Q Consensus 495 ~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~ 571 (594)
+..+++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.++. .|..+++|++|+|++|+|+.+ |..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44555555555555555544 3345555555555555555555533 355555555555555555533 34455555555
Q ss_pred EEEccCCCCc
Q psy6452 572 TFYAQRKYWM 581 (594)
Q Consensus 572 ~L~L~~N~l~ 581 (594)
+|+|++|+|+
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 5555555555
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-15 Score=136.85 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=106.9
Q ss_pred cccCCCcEEEcCCccccccCccccccCC-CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLK-NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE 516 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 516 (594)
..+.+|+.|++++|.++.. +. +..+. +|++|++++|. +..+ ..+..+++|++|+|++|.|+.+|.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~-----------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNE-----------IRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSC-----------CCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCC-----------CCcc-cccccCCCCCEEECCCCcccccCc
Confidence 3456778888888887754 33 44444 89999999863 3334 467788899999999999998886
Q ss_pred c-ccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCccCcc----cccCCCCcEEEccCCCCccc
Q psy6452 517 D-IGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTMLPDG----FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 517 ~-~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~ip~~----l~~l~~L~~L~L~~N~l~~l 583 (594)
. +..+++|++|+|++|+|+.+|. .+..+++|+.|++++|+++.+|.. +..+++|+.|++++|.+...
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 6 5889999999999999998887 788999999999999999988875 88999999999999987654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=130.72 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=104.9
Q ss_pred cccccCCCcceEeCCCCcCcccccccccccccCcccccCC-CCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc
Q psy6452 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 459 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
..+..+.+|+.|++++| .+..+|. +..+ ++|+.|+|++|.|+.+ ..+..+++|++|+|++|+|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n-----------~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-----------KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp CEEECTTSCEEEECTTS-----------CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred HhcCCcCCceEEEeeCC-----------CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc
Confidence 44677899999999996 3445554 4444 4999999999999998 6799999999999999999999
Q ss_pred Cc-cccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccCHh---HHhhhhCC
Q psy6452 538 PE-SFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLTIS---LLCYLMGL 594 (594)
Q Consensus 538 p~-~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L 594 (594)
|. .|..+++|++|+|++|+|+.+|. .+..+++|++|++++|+++.+|.. ++..+.+|
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 76 45899999999999999999987 689999999999999999999876 56666543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=125.82 Aligned_cols=105 Identities=31% Similarity=0.486 Sum_probs=87.0
Q ss_pred ceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANLK 545 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~ 545 (594)
+.+++++ +.++.+|..+. ++|+.|+|++|+|+.+ |..|.++++|++|+|++|+|+.+|. .|..++
T Consensus 15 ~~l~~~~-----------n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQN-----------IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCS-----------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCC-----------CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 5677777 45667776664 7899999999999977 4458889999999999999998876 568889
Q ss_pred CCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 546 SLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 546 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+|++|+|++|+|+.+|.. |..+++|++|+|++|+|...+.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999999999988776 8889999999999999887765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=124.74 Aligned_cols=106 Identities=27% Similarity=0.431 Sum_probs=87.5
Q ss_pred cceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
.+.+++++ +.+..+|..+. ++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+|. .|..+
T Consensus 11 ~~~l~~s~-----------n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSG-----------KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTT-----------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCC-----------CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 46777877 45566776553 7899999999999987 4458899999999999999998876 57889
Q ss_pred CCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCH
Q psy6452 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
++|++|+|++|+|+.+|.. |..+++|++|+|++|+|+....
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999999988775 8889999999999999887654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-12 Score=130.79 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=69.1
Q ss_pred CccCCC-cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCC
Q psy6452 229 CNKQYH-DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLN 305 (594)
Q Consensus 229 ~~~~l~-~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~ 305 (594)
+|.++. .|+++.+.. .++.|...+|.++.+|+.+.++.|.-..+..+...+|.++.+|+.+.+..+ ++.++ .|..
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 444443 466666653 366666666666666666666665444444555666666666666655443 44333 3556
Q ss_pred CcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCC
Q psy6452 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369 (594)
Q Consensus 306 l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 369 (594)
+.+|+.+.+.. .++.++...+.. ...|+.+.+..+ ++.|...+|. ..+|+.+.+..
T Consensus 136 c~~L~~i~lp~-~~~~I~~~~F~~-----c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 136 CEELDTVTIPE-GVTSVADGMFSY-----CYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTT-----CTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECT
T ss_pred hcccccccccc-eeeeecccceec-----ccccccccccce-eeEecccccc-ccceeEEEECC
Confidence 66666666643 233343333211 134555555432 4455555553 24455555543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-16 Score=146.75 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=110.1
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccc
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 483 (594)
.....++.++++.+. +.|.+|.. .... ..+..+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus 15 ~~~~~l~~l~l~~~~-l~~~~~~l--~~l~-~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n-------- 80 (198)
T 1ds9_A 15 EERKSVVATEAEKVE-LHGMIPPI--EKMD-ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRN-------- 80 (198)
T ss_dssp HHTTCCCCTTCSEEE-CCBCCTTC--CCCH-HHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEE--------
T ss_pred HhcccccCcchheeE-eccccCcH--hhhh-HHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCC--------
Confidence 344556666665543 34444320 0000 0223466888888888888774 3 7778888888888874
Q ss_pred cccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCcc-
Q psy6452 484 FVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTML- 560 (594)
Q Consensus 484 ~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~i- 560 (594)
.+..+|..+..+++|++|+|++|+|+.+| .+..+++|++|+|++|+|+.++. .+..+++|++|++++|+++..
T Consensus 81 ---~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 81 ---LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp ---EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ---CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 45567777777788888888888888876 57778888888888888887654 677888888888888888743
Q ss_pred Cc----------ccccCCCCcEEEccCCCCcccC
Q psy6452 561 PD----------GFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 561 p~----------~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|. .+..+++|++|+ +|+++...
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 32 167788888776 77776543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=124.06 Aligned_cols=87 Identities=28% Similarity=0.376 Sum_probs=65.7
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.++. |..+++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 466777777777777777777778888888888887554 566777778888888888888887763 677888888
Q ss_pred EeccCCccccCc
Q psy6452 312 LDISHNNFESMP 323 (594)
Q Consensus 312 L~Ls~N~l~~lp 323 (594)
|+|++|.++..+
T Consensus 107 L~L~~N~~~c~c 118 (170)
T 3g39_A 107 IWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCBCTTB
T ss_pred EEeCCCCCCCCc
Confidence 888888877654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=122.84 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=56.3
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~~ 311 (594)
++|++|+|++|+|+.+++..|.++++|++|+|++|+|++ ++...|..+++|++|+|++|+|+.+|. |..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 345556666666666655556666666666666666444 455556666777777777777766663 666777777
Q ss_pred EeccCCccccCch
Q psy6452 312 LDISHNNFESMPL 324 (594)
Q Consensus 312 L~Ls~N~l~~lp~ 324 (594)
|+|++|.+...+.
T Consensus 110 L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 110 IYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCBCTTBG
T ss_pred EEeCCCCcccccc
Confidence 7777777765553
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=129.53 Aligned_cols=305 Identities=11% Similarity=0.169 Sum_probs=215.8
Q ss_pred CCcccchHhhhcCC-CCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCC---CCCCC--CcCCCcCccEEeccCCc
Q psy6452 245 DINFVQESMSQKLT-NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK---LSELP--DFLNFKVLKELDISHNN 318 (594)
Q Consensus 245 ~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~---l~~lp--~~~~l~~L~~L~Ls~N~ 318 (594)
.++.|...+|.++. .|+.+.+..+ +..|...+|.++.+|+.+.+..|. ++.|+ .|.++.+|+.+.+..+
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 46788999999885 6999999864 556788999999999999998875 66565 5888999998887654
Q ss_pred cccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC-CccEEeCCCCCCCCC
Q psy6452 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH-TLQTFSMNHNIGMKI 397 (594)
Q Consensus 319 l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~-~L~~L~L~~N~~~~i 397 (594)
++.++...+.. ..+|+.+.+.. .+..+....|.++.+|+.+.+..+ ++.+....|.. .|+.+.+..+.. .+
T Consensus 125 ~~~I~~~aF~~-----c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i 196 (394)
T 4gt6_A 125 VTEIDSEAFHH-----CEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RI 196 (394)
T ss_dssp CSEECTTTTTT-----CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EE
T ss_pred cceehhhhhhh-----hcccccccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-cc
Confidence 66666555432 36899999964 567888899999999999999765 66666665543 688888765522 22
Q ss_pred CchhhhcccCcccEEECcCCCCccCCccHHHhhh-----cccccccccCCCcEEEcCCccccccCccccccCCCcceEeC
Q psy6452 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH-----MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472 (594)
Q Consensus 398 p~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 472 (594)
.... |..+..+.......... ..+...+... ...........+..+.+. +.++.....+|.++..|+.+.+
T Consensus 197 ~~~a-f~~c~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 197 GTNA-FSECFALSTITSDSESY--PAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CTTT-TTTCTTCCEEEECCSSS--CBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEEC
T ss_pred ccch-hhhccccceeccccccc--ccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEec
Confidence 2222 46677777776554321 0111000000 000111122234444443 3455666778999999999998
Q ss_pred CCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEE
Q psy6452 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKIL 550 (594)
Q Consensus 473 s~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L 550 (594)
.++. ..--...|.++++|+.+.+. +.++.|++. |.++.+|+.++|..+ ++.|.. +|.++.+|+.+
T Consensus 273 p~~~-----------~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 273 PDSV-----------VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CTTC-----------CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccc-----------ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 7642 21122456788999999996 668888775 999999999999864 888855 89999999999
Q ss_pred ECcCCCCCccCcc-cccCCCCcEEEccCCCC
Q psy6452 551 DVSYNKLTMLPDG-FVMLSNLTTFYAQRKYW 580 (594)
Q Consensus 551 ~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l 580 (594)
.+.. .++.|.+. |.++++|+.+++.+|..
T Consensus 340 ~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 340 AIPS-SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EECT-TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EECc-ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 9975 48888665 99999999999998754
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-14 Score=135.97 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=97.6
Q ss_pred cCCCcEEEcCCccccccCcc------ccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc
Q psy6452 440 FSNLISLHMQNTAAVMSNVS------QLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC 513 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ 513 (594)
...++.++++.+.+++..+. .+..+++|++|++++| .+..+| .+..+++|+.|++++|.|+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-----------~l~~l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-----------NIEKIS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-----------EESCCC-CHHHHTTCCEEEEEEEEECS
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-----------CCcccc-ccccCCCCCEEECCCCCccc
Confidence 34666666666666666555 6777888888888874 445566 77777888888888888888
Q ss_pred ccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccC
Q psy6452 514 IPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 514 ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
+|..+..+++|++|+|++|+++.+| .+..+++|++|++++|+|+.++. .+..+++|++|++++|+++..+
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 7776777778888888888888776 57777788888888888887654 4777888888888888876553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=124.01 Aligned_cols=305 Identities=11% Similarity=0.101 Sum_probs=163.8
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcC
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKV 308 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~ 308 (594)
....+|+.+.+. ..++.|+..+|.++.+|+.++|..+ +..+...+|.++ +|+.+.+..+ ++.++ .|.. .+
T Consensus 43 ~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 43 KDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 345678888886 4688999999999999999999754 445778888776 6888877644 66555 3554 47
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc-CCccEE
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT-HTLQTF 387 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L 387 (594)
|+.+.+..+ ++.+....+.. .+++.+.+.. .++.+....|..+.+++.+.+..+........... ....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~------~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYN------SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK-- 184 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTT------CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTS--
T ss_pred cccccCCCc-ccccccccccc------ceeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccccc--
Confidence 899888765 44454443322 3455555543 45667777788888888888876654332211100 0000
Q ss_pred eCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCc
Q psy6452 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467 (594)
Q Consensus 388 ~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 467 (594)
.+... +.....+..+.+.... .......+....+++.+.+..+ +......+|.++..|
T Consensus 185 --------~~~~~--~~~~~~~~~~~~~~~~-----------~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L 242 (379)
T 4h09_A 185 --------TILES--YPAAKTGTEFTIPSTV-----------KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKAL 242 (379)
T ss_dssp --------SEEEE--CCTTCCCSEEECCTTC-----------CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSC
T ss_pred --------ceecc--ccccccccccccccce-----------eEEeecccccccccceeeeccc-eeEEccccccCCccc
Confidence 00000 0112222222222110 0001111122334444444322 333334445555555
Q ss_pred ceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCC
Q psy6452 468 KYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANL 544 (594)
Q Consensus 468 ~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 544 (594)
+.+.+..+ +..+. ..+.++.+|+.+.+..+ ++.++.. |.++.+|+.+.+.++.++.|+. +|.++
T Consensus 243 ~~i~lp~~------------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 243 DEIAIPKN------------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp CEEEECTT------------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred eEEEcCCC------------ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCC
Confidence 55555442 11111 23444555666655432 4455443 5666666666666666666643 56666
Q ss_pred CCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccCHhHHhh
Q psy6452 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLTISLLCY 590 (594)
Q Consensus 545 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~ 590 (594)
.+|+.+.|..+ ++.|... |.++++|+.+.+..+ ++.|...+|.+
T Consensus 310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 66666666532 5555443 666666666666443 55566665544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-13 Score=136.86 Aligned_cols=162 Identities=19% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCccEEeCCCCCCCCCCchhhh---c-ccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccC
Q psy6452 382 HTLQTFSMNHNIGMKIPEWFWY---Q-EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN 457 (594)
Q Consensus 382 ~~L~~L~L~~N~~~~ip~~~~~---~-~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 457 (594)
+.|+.|++++|.++........ . ..++|+.|++++|. +...-...+. ..+.+|+.|++++|.++...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--------~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLL--------PVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTH--------HHHHTEEEEECCSSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHH--------HHHHhccHhhcCCCCCCHHH
Confidence 4677777777766544332211 1 22567777777764 1111111111 12235677777777766554
Q ss_pred cccc-----ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc-----ccccccCCCCCcEE
Q psy6452 458 VSQL-----KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-----IPEDIGNLICLEKL 527 (594)
Q Consensus 458 ~~~~-----~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L 527 (594)
...+ ...++|+.|++++|.+... -...++..+..+++|++|+|++|.|+. ++..+...++|++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAA------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHH------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChH------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 4444 2345666666666532211 011233344455666666666666662 33445555666666
Q ss_pred EccCCCCcc-----cCccccCCCCCCEEECcCCCCC
Q psy6452 528 NISHNKVYK-----LPESFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 528 ~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~ 558 (594)
+|++|.|+. +...+...++|++|+|++|.|+
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 666666662 2334445566666666666666
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-13 Score=139.88 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=76.7
Q ss_pred cCCCcEEEcCCccccccCccc----cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcc--
Q psy6452 440 FSNLISLHMQNTAAVMSNVSQ----LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-- 513 (594)
Q Consensus 440 ~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~-- 513 (594)
.++|+.|++++|.++...... +..+++|++|++++|.+.... ...++..+...++|++|+|++|.|+.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG------LELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH------HHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH------HHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 358999999999987654443 467899999999998543211 12345566777899999999999983
Q ss_pred ---ccccccCCCCCcEEEccCCCCcccC-cccc---CCC--CCCEEE--CcCCCCC
Q psy6452 514 ---IPEDIGNLICLEKLNISHNKVYKLP-ESFA---NLK--SLKILD--VSYNKLT 558 (594)
Q Consensus 514 ---ip~~~~~l~~L~~L~Ls~N~l~~lp-~~~~---~l~--~L~~L~--Ls~N~l~ 558 (594)
++..+...++|++|+|++|.|+... ..+. ... .|+.+. +..|.++
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 4455677899999999999998431 1222 222 266776 6666665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=124.32 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=77.0
Q ss_pred ccccCcccccCCCCCcEEeCcc-ccCccccc-cccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc
Q psy6452 487 VLWELPLSILYLSSIQELHLSN-VQLNCIPE-DIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG 563 (594)
Q Consensus 487 ~~~~ip~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~ 563 (594)
.+..+|. +..+++|+.|+|++ |.|+.+|. .|.++++|++|+|++|+|+.++. .|..+++|+.|+|++|+|+.+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 6777887 88888888888886 88888874 48888888888888888887754 788888888888888888888776
Q ss_pred -cccCCCCcEEEccCCCCccc
Q psy6452 564 -FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 564 -l~~l~~L~~L~L~~N~l~~l 583 (594)
+..++ |+.|+|++|+|...
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCC
T ss_pred HcccCC-ceEEEeeCCCccCC
Confidence 44444 88888888888754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=110.33 Aligned_cols=288 Identities=11% Similarity=0.104 Sum_probs=183.8
Q ss_pred HhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEEeccCCccccCchhhhhc
Q psy6452 252 SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVH 329 (594)
Q Consensus 252 ~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 329 (594)
.+|....+|+.+.+... +..|+..+|.++.+|+.++|..+ ++.|+ .|.++ +|+.+.+.. .++.++...+..
T Consensus 40 ~~~~~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~ 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG 112 (379)
T ss_dssp TTGGGGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT
T ss_pred cccccccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceecc
Confidence 44667788999998753 66788899999999999999754 77666 47665 677777654 355565544422
Q ss_pred cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcc
Q psy6452 330 FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCL 409 (594)
Q Consensus 330 ~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L 409 (594)
.+|+.+.+..+ ++.+...+|.+. +|+.+.+..+ ++.+....+ ..+..+
T Consensus 113 ------~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f-----------------------~~~~~l 160 (379)
T 4h09_A 113 ------TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIG-----------------------YKAENL 160 (379)
T ss_dssp ------CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTT-----------------------TTCTTC
T ss_pred ------CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchh-----------------------cccccc
Confidence 35777777543 455555566443 4555544432 333332222 233444
Q ss_pred cEEECcCCCCccCCccHHH--hhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccc
Q psy6452 410 KELNMSSTDPFFEHLPIWL--LNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNV 487 (594)
Q Consensus 410 ~~L~Ls~n~~~~~~lp~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~ 487 (594)
+.+.+..++.......... ........+.....+..+.+... ........+..+.+|+.+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~------------ 227 (379)
T 4h09_A 161 EKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG------------ 227 (379)
T ss_dssp CEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT------------
T ss_pred cccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc------------
Confidence 4444333210000000000 00000011122234444444332 23334456677788888888763
Q ss_pred cccC-cccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcc-
Q psy6452 488 LWEL-PLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG- 563 (594)
Q Consensus 488 ~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~- 563 (594)
+..+ ...+.++..|+.+.+..+ ++.|... |.++.+|+.+.+.. .++.++. +|.++.+|+.+.+.++.++.|++.
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhh
Confidence 2222 235667889999999876 7777664 88999999999975 4777865 899999999999999999999766
Q ss_pred cccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 564 FVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 564 l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
|.++.+|+.+.|..+ ++.|+..+|.++.+|
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 999999999999765 999999999887765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=118.59 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred CcccEEEccC-CCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC--cCCCcCcc
Q psy6452 234 HDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~l~~L~ 310 (594)
++|+.|+|++ |+|+.+++..|.++++|++|+|++|+|++ +++..|..+++|++|+|++|+|+.+|. |..++ |+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF---VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE---ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce---eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 4455555553 55555555555555555555555555333 344445555555555555555555542 22232 55
Q ss_pred EEeccCCcccc
Q psy6452 311 ELDISHNNFES 321 (594)
Q Consensus 311 ~L~Ls~N~l~~ 321 (594)
+|+|++|.+..
T Consensus 107 ~l~l~~N~~~c 117 (347)
T 2ifg_A 107 ELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCCC
T ss_pred EEEeeCCCccC
Confidence 55555555553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-09 Score=97.66 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=80.7
Q ss_pred ccccCCCcceEeCCCC-cCcccccccccccccCcccccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCC
Q psy6452 460 QLKYLKNIKYLNCSND-IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNK 533 (594)
Q Consensus 460 ~~~~l~~L~~L~Ls~n-~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~ 533 (594)
.+...++|+.|++++| .+.... ...+...+...++|++|+|++|.|+ .+...+...++|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g------~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT------LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH------HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHH------HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3444556666666664 332211 1122334455678888888888887 345556677889999999999
Q ss_pred Ccc-----cCccccCCCCCCEEEC--cCCCCCc-----cCcccccCCCCcEEEccCCCCcc
Q psy6452 534 VYK-----LPESFANLKSLKILDV--SYNKLTM-----LPDGFVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 534 l~~-----lp~~~~~l~~L~~L~L--s~N~l~~-----ip~~l~~l~~L~~L~L~~N~l~~ 582 (594)
|+. +...+...++|++|+| ++|.|+. +.+.+...+.|++|+|++|.+..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 883 4556777788999999 7899883 45556777889999999998763
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-08 Score=102.42 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=92.5
Q ss_pred cccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc--cCCCcceEeCCCCcCcccc
Q psy6452 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK--YLKNIKYLNCSNDIDHRKS 481 (594)
Q Consensus 404 ~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~ 481 (594)
..+|+|+.|++++|.. -.++ .+ ..++|+.|++..+.+.......+. .+++|+.|+|+.+......
T Consensus 169 ~~~P~L~~L~L~g~~~--l~l~----------~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNN--LSIG----------KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HTCTTCCEEEEECCBT--CBCC----------SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred hcCCCCcEEEEeCCCC--ceec----------cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 4566777777766410 0111 11 145777787777776655444443 6788888887531000000
Q ss_pred cccccccccCcccc--cCCCCCcEEeCccccCcc-ccccc---cCCCCCcEEEccCCCCcc-----cCccccCCCCCCEE
Q psy6452 482 QDFVNVLWELPLSI--LYLSSIQELHLSNVQLNC-IPEDI---GNLICLEKLNISHNKVYK-----LPESFANLKSLKIL 550 (594)
Q Consensus 482 ~~~~n~~~~ip~~~--~~l~~L~~L~Ls~N~l~~-ip~~~---~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L 550 (594)
. ..+..+...+ ..+++|+.|+|++|.++. .+..+ ..+++|++|+|+.|.|+. ++..+..+++|+.|
T Consensus 236 ~---~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 236 D---GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp C---SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred c---hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 0 0011111112 247899999999998872 22222 357889999999999884 34444567889999
Q ss_pred ECcCCCCCc-cCccccc-CCCCcEEEccCCC
Q psy6452 551 DVSYNKLTM-LPDGFVM-LSNLTTFYAQRKY 579 (594)
Q Consensus 551 ~Ls~N~l~~-ip~~l~~-l~~L~~L~L~~N~ 579 (594)
+|++|.|+. .-..+.. + ...+++++++
T Consensus 313 ~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999998883 2122222 2 3568888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.4e-08 Score=98.76 Aligned_cols=138 Identities=20% Similarity=0.138 Sum_probs=93.2
Q ss_pred cccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccc--cCCCCCcEEeCcc--cc---
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI--LYLSSIQELHLSN--VQ--- 510 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~--~~l~~L~~L~Ls~--N~--- 510 (594)
..+++|+.|+++++.-... ..+. +++|+.|++..+.+.. .....+ ..+++|+.|+|+. |.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l--~~~~-~~~L~~L~L~~~~l~~----------~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI--GKKP-RPNLKSLEIISGGLPD----------SVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC--CSCB-CTTCSEEEEECSBCCH----------HHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred hcCCCCcEEEEeCCCCcee--cccc-CCCCcEEEEecCCCCh----------HHHHHHHHccCCCCcEEEEecccccccc
Confidence 4568999999988731111 2233 7899999998763221 111122 2578999999863 22
Q ss_pred ---Cccccccc--cCCCCCcEEEccCCCCcc-cCccc---cCCCCCCEEECcCCCCCc-----cCcccccCCCCcEEEcc
Q psy6452 511 ---LNCIPEDI--GNLICLEKLNISHNKVYK-LPESF---ANLKSLKILDVSYNKLTM-----LPDGFVMLSNLTTFYAQ 576 (594)
Q Consensus 511 ---l~~ip~~~--~~l~~L~~L~Ls~N~l~~-lp~~~---~~l~~L~~L~Ls~N~l~~-----ip~~l~~l~~L~~L~L~ 576 (594)
+..+...+ ..+++|++|+|++|.+.. .+..+ ..+++|++|+|++|.|+. ++.++..+++|+.|+|+
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 22333333 357999999999999983 22222 357899999999999994 45556778999999999
Q ss_pred CCCCcccCHhHH
Q psy6452 577 RKYWMFLTISLL 588 (594)
Q Consensus 577 ~N~l~~l~~~~~ 588 (594)
+|+|+.-....+
T Consensus 316 ~n~i~d~~~~~l 327 (362)
T 2ra8_A 316 YNYLSDEMKKEL 327 (362)
T ss_dssp SBBCCHHHHHHH
T ss_pred CCcCCHHHHHHH
Confidence 998775444333
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-08 Score=91.42 Aligned_cols=113 Identities=11% Similarity=0.149 Sum_probs=79.7
Q ss_pred cCCCcEEEcCCc-cccccCc----cccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc--
Q psy6452 440 FSNLISLHMQNT-AAVMSNV----SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-- 512 (594)
Q Consensus 440 ~~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-- 512 (594)
.+.|+.|++++| .+..... ..+...++|++|+|++|.+.... ...+...+...++|++|+|++|.|+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------AFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------HHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------HHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 446666666666 6654322 33455677888888887443221 1123334555678999999999998
Q ss_pred ---cccccccCCCCCcEEEc--cCCCCcc-----cCccccCCCCCCEEECcCCCCC
Q psy6452 513 ---CIPEDIGNLICLEKLNI--SHNKVYK-----LPESFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 513 ---~ip~~~~~l~~L~~L~L--s~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~ 558 (594)
.+...+...++|++|+| ++|.|+. +...+...++|++|+|++|.|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 35667888899999999 8899982 4556777789999999999887
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-07 Score=91.64 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=63.1
Q ss_pred CcccE--EEccCCCCcccch---HhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCc-
Q psy6452 234 HDIFT--VNLSHQDINFVQE---SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFK- 307 (594)
Q Consensus 234 ~~L~~--L~Ls~n~l~~l~~---~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~- 307 (594)
+.|+. ++++.|....++. .+..++++|+.|+|++|+|+++..++ ..+..+++|+.|+|++|+|+++.++..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 44555 6677776554442 23367889999999999988866554 34468899999999999998776555444
Q ss_pred -CccEEeccCCcccc
Q psy6452 308 -VLKELDISHNNFES 321 (594)
Q Consensus 308 -~L~~L~Ls~N~l~~ 321 (594)
+|++|+|++|.+.+
T Consensus 220 l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 220 LKLEELWLDGNSLCD 234 (267)
T ss_dssp SCCSEEECTTSTTGG
T ss_pred CCcceEEccCCcCcc
Confidence 88888888888874
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-07 Score=91.29 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCCCCcEEeCccccCcccc---ccccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCC-ccCc-------c
Q psy6452 497 YLSSIQELHLSNVQLNCIP---EDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLT-MLPD-------G 563 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~-~ip~-------~ 563 (594)
++++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+.. .+..+ +|++|+|++|.++ .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 4567777777777777543 345567777777777777776522 22333 6777777777776 3431 2
Q ss_pred cccCCCCcEEE
Q psy6452 564 FVMLSNLTTFY 574 (594)
Q Consensus 564 l~~l~~L~~L~ 574 (594)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667776665
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=9.2e-06 Score=75.31 Aligned_cols=88 Identities=16% Similarity=0.050 Sum_probs=65.0
Q ss_pred cccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCC---CCC--
Q psy6452 494 SILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYN---KLT-- 558 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N---~l~-- 558 (594)
.+..-+.|+.|+|++|.|+ .|.+.+..-+.|++|+|++|+|+ .|-+++..-+.|++|+|++| .|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 4445578888899888888 45556667788999999999988 34556777778999999865 444
Q ss_pred ---ccCcccccCCCCcEEEccCCCCc
Q psy6452 559 ---MLPDGFVMLSNLTTFYAQRKYWM 581 (594)
Q Consensus 559 ---~ip~~l~~l~~L~~L~L~~N~l~ 581 (594)
.|.+.+...+.|++|+++.|.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 24455677788999998877543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=72.52 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCC-CCCccccchhhhhcC----CCCCEEEcCCC-CCC--CCCCcC
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKL----TNLIVLDLSHN-KLS--ELPDFL 304 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~i~~l~~~~~~~l----~~L~~L~Ls~N-~l~--~lp~~~ 304 (594)
-..|++||++++.|+...-..+.++++|++|+|++|. |++- .-..+..+ ++|++|+|++| +|+ ++..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3479999999999987766667899999999999985 5541 11222333 47999999998 487 455677
Q ss_pred CCcCccEEeccCCc-ccc
Q psy6452 305 NFKVLKELDISHNN-FES 321 (594)
Q Consensus 305 ~l~~L~~L~Ls~N~-l~~ 321 (594)
.+++|++|+++++. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 88999999999985 554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=4.9e-05 Score=70.41 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=72.4
Q ss_pred cCCCCCcEEeCccc-cCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCC-----c
Q psy6452 496 LYLSSIQELHLSNV-QLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLT-----M 559 (594)
Q Consensus 496 ~~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~-----~ 559 (594)
.+-+.|++|+|++| .|. .+-+.+..-+.|+.|+|++|+|. .|.+.+...+.|++|+|++|+|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34578999999986 887 45666788899999999999999 45556777789999999999999 3
Q ss_pred cCcccccCCCCcEEEccCCCCcccCH
Q psy6452 560 LPDGFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 560 ip~~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
|.+.+...+.|++|+|++|....+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCH
Confidence 56667888899999999765434443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=64.63 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=45.3
Q ss_pred cEEeCccccCc--cccccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCC
Q psy6452 502 QELHLSNVQLN--CIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT 558 (594)
Q Consensus 502 ~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~ 558 (594)
..++.+++.++ .+|..+. .+|++|+|++|+|+.||. .|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 8887654 468889999999998866 6788888999999998887
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.51 E-value=5.3e-05 Score=68.85 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCCcEEeCccccCcccc-ccccCCCCCcEEEccCCC-Cc--ccCccccCC----CCCCEEECcCC-CCCc--cCcccccC
Q psy6452 499 SSIQELHLSNVQLNCIP-EDIGNLICLEKLNISHNK-VY--KLPESFANL----KSLKILDVSYN-KLTM--LPDGFVML 567 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l----~~L~~L~Ls~N-~l~~--ip~~l~~l 567 (594)
..|++||++++.|+..- ..+..+++|++|+|++|. |+ .+ ..+..+ ++|++|+|++| +||. + ..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 36777777777776321 235677788888888774 65 22 223333 36788888776 4772 3 335667
Q ss_pred CCCcEEEccCCC-Ccc
Q psy6452 568 SNLTTFYAQRKY-WMF 582 (594)
Q Consensus 568 ~~L~~L~L~~N~-l~~ 582 (594)
++|++|+|++.+ ++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 788888887765 443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=62.35 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=49.2
Q ss_pred cEEeccCCccc--cCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 310 KELDISHNNFE--SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 310 ~~L~Ls~N~l~--~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
..++.+++.++ .+|. .+|.+++.|+|++|+|+.++..+|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~--------~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT--------AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS--------CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC--------CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999988 8885 35578999999999999999999999999999999999875
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.01 Score=47.29 Aligned_cols=31 Identities=39% Similarity=0.765 Sum_probs=27.2
Q ss_pred ccccccCCCCeeeeceeeeeeeccccccccc
Q psy6452 92 IHTCEKCEKPIMIYGRMICTIMKFGKEITTV 122 (594)
Q Consensus 92 ~~~C~~C~~~~~~~g~~i~~~~~~~~~~~~~ 122 (594)
+++|++|+.|+.++||++||.+++..+-...
T Consensus 1 ~hfC~~C~~Pi~iygRmIPCkHvFCydCa~~ 31 (101)
T 3vk6_A 1 VHFCDKCGLPIKVYGRMIPCKHVFCYDCAIL 31 (101)
T ss_dssp CCBCTTTCSBCSEEEEEETTCCEEEHHHHHH
T ss_pred CeecCccCCCeEEEeeeccccccHHHHHHHH
Confidence 4799999999999999999999998776533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 594 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-17 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-08 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 4e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.001 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.001 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 8e-04 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 86.6 bits (213), Expect = 6e-19
Identities = 59/363 (16%), Positives = 118/363 (32%), Gaps = 35/363 (9%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ N L +T L + I+ V+ L NL ++ S+N+L+
Sbjct: 25 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLT 79
Query: 299 ELPDFLNFKVLKELDISHNNFE--------------SMPLCLQVHFYVHIPYKHSQSDIS 344
++ N L ++ +++N ++ +
Sbjct: 80 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
+N S L + T S N + +
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199
Query: 405 EFLCLKELNMSSTDP--FFEHLPIWLLNHMELKENGVFSNLISLH-MQNTAAVMSNVSQL 461
E L +S P +L LN +LK+ G ++L +L + +SN++ L
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 259
Query: 462 KYLKNIKYLNCSND----------IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL 511
L + L + + + + E I L ++ L L +
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319
Query: 512 NCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+ I + +L L++L ++NKV + S ANL ++ L +N+++ L L+ +T
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 376
Query: 572 TFY 574
Sbjct: 377 QLG 379
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 53.1 bits (126), Expect = 5e-08
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Query: 165 IEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDI-AMELID 223
IL L+ L ++ N+ ++ ++ L NN ++ + ++L
Sbjct: 213 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 272
Query: 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQK 283
+++ + NL + S L NLT L L NN DI+ V
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----S 327
Query: 284 LTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
LT L L ++NK+S++ N + L HN +
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.3 bits (124), Expect = 8e-08
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
+ + L+ N S LT L L ++N D++ + LTN
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA-----NLTN 352
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
+ L HN++S+L N + +L ++
Sbjct: 353 INWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 61/306 (19%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
N L+ ++ + L + S+ KLTN
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L L ++N++S++ L EL ++ N + + + + D+++N
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL-------DLANN 251
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEF 406
++ KL +L + NQI + L +N N
Sbjct: 252 QISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED---ISPISNL 306
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466
L L + + +S++S + L
Sbjct: 307 KNLTYLTLYFNN------------------------------------ISDISPVSSLTK 330
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEK 526
++ L +N N + ++ S+ L++I L + Q++ + + NL + +
Sbjct: 331 LQRLFFAN-----------NKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ 377
Query: 527 LNISHN 532
L ++
Sbjct: 378 LGLNDQ 383
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 82.6 bits (202), Expect = 1e-17
Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 29/336 (8%)
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKV 308
V L+L++ S+ + +L L S N L+ELP+ +
Sbjct: 29 VSRLRDCLDRQAHELELNNLG-------LSSLPELPPHLESLVASCNSLTELPELP--QS 79
Query: 309 LKELDISHNNFESMPL-----------CLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
LK L + +NN +++ Q+ + I +N L
Sbjct: 80 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
+ + + + + T N + L
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
L ++ LK + + + L +
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259
Query: 478 HRKSQDFVNVLW---ELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
+ + E+ S++EL++SN +L +P L E+L S N +
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHL 316
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
++PE ++LK L V YN L PD + +L
Sbjct: 317 AEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
++ + S+ +L L++S+N ++
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-------PALPPR 305
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
L L S N L+E+P+ + LK+L + +N P
Sbjct: 306 LERLIASFNHLAEVPELP--QNLKQLHVEYNPLREFP 340
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
EL L+N+ L+ +PE +L E L S N + +LPE +LKSL + + + L+
Sbjct: 38 RQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 559 MLPDGFVMLSNLTTFYAQRKYWMFL 583
LP L +
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNS 119
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.4 bits (163), Expect = 7e-13
Identities = 47/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V S + V + + + +LDL +N I +++ + L NL L L +NK+
Sbjct: 14 VVQCSDLGLEKVPKDLP---PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKI 67
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S++ F L+ L +S N + +P + +++ + + + F + +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
V + F + L +
Sbjct: 128 VVELG---------------------------TNPLKSSGIENGAFQGMKKLSYIRIAD- 159
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
++ G+ +L LH+ + + LK L N+ L S +
Sbjct: 160 --------------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535
+ L +ELHL+N +L +P + + ++ + + +N +
Sbjct: 206 SISAVDNGSLANTPHL----------RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255
Query: 536 KLPES-------FANLKSLKILDVSYNKLTMLP 561
+ + S + + N +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.2 bits (134), Expect = 3e-09
Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 28/296 (9%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + I +++ + L NL L L +N I L L L LS
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI---SPGAFAPLVKLERLYLSK 88
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N+L ELP+ + + +EL + N + + F + + +
Sbjct: 89 NQLKELPEKMPKTL-QELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENG 144
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELN 413
KL + I+ I + + L ++ N I L +L
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLA--KLG 201
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+S + + + L+ + K I+ +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-----------DHKYIQVVYLH 250
Query: 474 -NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
N+I S DF P +S + L + + C+
Sbjct: 251 NNNISAIGSNDFC-----PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 499 SSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNK 556
L L N ++ I + D NL L L + +NK+ K+ P +FA L L+ L +S N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 557 LTMLPDGFVM 566
L LP+
Sbjct: 91 LKELPEKMPK 100
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 19/153 (12%)
Query: 152 LSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKV 211
LS D + +I + L LH+D NK + + KL + N +
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211
Query: 212 TNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQ 271
++ L + LN + + V+ L +NN
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLAD----------------HKYIQVVYLHNNNIS 255
Query: 272 DIN---FVQESMSQKLTNLIVLDLSHNKLSELP 301
I F + K + + L N +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.1 bits (131), Expect = 8e-09
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 3/252 (1%)
Query: 309 LKELDISHNNFE---SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
+ LD+S N +P L Y++ Y +++ ++ Q+H+ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
++S L + + TL + + + N S +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
L + I N ++S+ + L S+ +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
++ ++L L + +N +P+ + L L LN+S N + NL+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 546 SLKILDVSYNKL 557
+ + NK
Sbjct: 292 RFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 37/243 (15%), Positives = 71/243 (29%), Gaps = 11/243 (4%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDI-----SHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
D+S N P + L L+ +N + + T + + +
Sbjct: 56 DLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 397 IPEWFWYQEFLCLKELNMSSTDPFFEHLPIW----LLNHMELKENGVFSNLISLHMQNTA 452
+ + L L+ S P L + N + + + +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN 512
S L +N + + + + Q++HL+ L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 513 CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+G L L++ +N++Y LP+ LK L L+VS+N L L
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Query: 572 TFY 574
Sbjct: 295 VSA 297
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 6/209 (2%)
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLK 410
P+C ++++ + L P ++ N + + L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTAL-PPDLPKDTTILHLSENLLYTFSLATL--MPYTRLT 58
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
+LN+ + + L L + + L Q A+ L ++
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS--NVQLNCIPEDIGNLICLEKLN 528
+ ++ N L LP +L + E N + L L+ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 529 ISHNKVYKLPESFANLKSLKILDVSYNKL 557
+ N +Y +P+ F L + N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 11/188 (5%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313
K+ + ++ N + + +L LS N L + + L +L+
Sbjct: 8 KVASHLEVNCDKRNLTALP------PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ + + + + + + + ++ +
Sbjct: 62 LDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 374 ILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME 433
L L + N + P + L+ +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 434 LKENGVFS 441
L+EN +++
Sbjct: 179 LQENSLYT 186
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 34/277 (12%), Positives = 72/277 (25%), Gaps = 29/277 (10%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
+ L N++S +P F+ + L I + + F + +
Sbjct: 32 AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ---TFSMNHNIGMKIPEWF 401
P +L L + ++ L + ++ + + F
Sbjct: 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L+ N + F L SL + N
Sbjct: 150 RDLGNLTHLFLHG---------------NRISSVPERAFRGLHSLDRLL---LHQNRVAH 191
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNL 521
+ + L + + ++ L ++Q L L++ C
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNL----SALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
L+K S ++V L + ++ N L
Sbjct: 248 AWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQ 282
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 32/318 (10%), Positives = 81/318 (25%), Gaps = 12/318 (3%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDLSHNKLS 298
++ +D V + + ++ + LS N +L + + S
Sbjct: 14 AITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 299 ELPDFL--NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ D + ++L + + ++ L
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ K+ + ++ + K + L++ N W + F + L+
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
+E L L +Q+ S L +
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDI-GNLICLEKLNIS 530
+ S L +Q L L ++ + I + L L ++
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310
Query: 531 HNKVYKLPESFANLKSLK 548
N+ + + ++ +
Sbjct: 311 GNRFSEEDDVVDEIREVF 328
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 22/221 (9%), Positives = 56/221 (25%), Gaps = 15/221 (6%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L N + +N L + L ++ + L L++
Sbjct: 18 LANAIKIAAGKSN-----VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + + + + + + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS-----TQITDVTPLAG 127
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ NI + +++ + L + ++ +
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 437 NGVFS---NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ NLI +H++N +S+VS L N+ + +N
Sbjct: 188 ISPLASLPNLIEVHLKNNQ--ISDVSPLANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 19/193 (9%), Positives = 60/193 (31%), Gaps = 9/193 (4%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ L + + + + L + N L
Sbjct: 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-------QITDLAPLKNLTKITELELSG 94
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
+ + ++ + ++ + A + + L I ++ + + +
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540
N + LS + L + +++ I + +L L ++++ +N++ +
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-P 212
Query: 541 FANLKSLKILDVS 553
AN +L I+ ++
Sbjct: 213 LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT 285
+ + LS + + L+ LT L N DI+ + L
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA-----SLP 195
Query: 286 NLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
NLI + L +N++S++ N L + +++
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.9 bits (108), Expect = 1e-06
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP------------- 335
VL L+H L+ L ++ LD+SHN ++P L + +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 336 ---YKHSQSDISHNNFESMPLCLQVHFC-KLVKLDISHNQI 372
+ + + +N + + C +LV L++ N +
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI 514
++ + L+ L + +L+ S+ N L LP ++ L ++ L S+ L +
Sbjct: 10 LTVLCHLEQLLLVTHLDLSH-----------NRLRALPPALAALRCLEVLQASDNALENV 58
Query: 515 PEDIGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD 562
L++L + +N++ + + + L +L++ N L
Sbjct: 59 DGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 527 LNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583
L+++H + L L + LD+S+N+L LP L L A +
Sbjct: 3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 502 QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561
+ LHL++ L + + L+ + L++SHN++ LP + A L+ L++L S N L +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 562 DGFVM 566
+
Sbjct: 60 GVANL 64
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQD------------------INFVQESMS 281
+L+H+D+ + ++L +T LDLSHN +
Sbjct: 4 HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 282 QKLTNLIVLDLSHNKLSELPD---FLNFKVLKELDISHNNFESMP 323
L L L L +N+L + ++ L L++ N+
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKY 579
N + +L++ K+ + A L +D S N++ L GF +L L T
Sbjct: 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR 74
Query: 580 WM 581
Sbjct: 75 IC 76
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 247 NFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
++++ LDL I E++ L +D S N++ +L F
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKLDGFPL 61
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ LK L +++N + L + + + L+
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 33/174 (18%)
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
L+ + + + N +ELD+ +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIE---------------------------- 34
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLK 410
L + +D S N+I+ L L+T +N+N L
Sbjct: 35 --NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +S + P+ L + + N ++ V+ V Q++ L
Sbjct: 93 ILTNNSLVELGDLDPLASLKSL--TYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 26/212 (12%), Positives = 68/212 (32%), Gaps = 9/212 (4%)
Query: 254 SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE--LPDFLNFKVLKE 311
+ +DLS++ + + + + L L L +LS+ + L
Sbjct: 42 HFSPFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99
Query: 312 LDISHNNF---ESMPLCLQVHFYVHIPYKHSQSDISHNNFESM--PLCLQVHFCKLVKLD 366
L++S + ++ L + D + + + + + L
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159
Query: 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPI 426
+ + + R L ++ ++ +K + + + L+ L++S +
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219
Query: 427 WLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
L LK VF + +Q + ++
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/298 (12%), Positives = 93/298 (31%), Gaps = 35/298 (11%)
Query: 261 TVLDLSHNNHQDINFVQESMSQKLT-NLIVLDLSHNKLSE-LPDFLNFKVLKELDISHNN 318
LDL+ N + + L+ +I + + + L + + ++ +D+S++
Sbjct: 3 QTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 57
Query: 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP 378
E L + + + + LV+L++S
Sbjct: 58 IEVSTLHGILSQCSKLQNLS----LEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFA 112
Query: 379 RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIW----LLNHMEL 434
T ++ ++ + + ++ + T L+ +
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
+ + +S + QL YL+++ C + I E L
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------------ETLLE 220
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLI--CLEKLNISHNKVYKL-PESFANLKSLKI 549
+ + +++ L + +P+ L+ L L I+ + + + N K+ +I
Sbjct: 221 LGEIPTLKTLQVF----GIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 12/192 (6%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L L N D + L + L + + L +++ S+
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTD-----LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 71
Query: 317 NNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + L + + +DI+ + L + ++ +D N +
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
++T+ S + F + LK L L ++ ++
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLA------NLTTLERLDISSNKVS 185
Query: 436 ENGVFSNLISLH 447
+ V + L +L
Sbjct: 186 DISVLAKLTNLE 197
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 16/231 (6%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQTFSMNHNIGMKIP 398
+ +P L ++L +++++ K + +++ I
Sbjct: 14 LCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70
Query: 399 EWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
+ + + + + + + + + L + + V
Sbjct: 71 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS------IQELHLSNVQLN 512
+ N + + L + + ++ + + N L
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190
Query: 513 CIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLP 561
+P D+ L+IS +++ LP NLK L+ L LP
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (84), Expect = 0.003
Identities = 26/227 (11%), Positives = 52/227 (22%), Gaps = 20/227 (8%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
N I L KL + F +L+ + + ++ + ++P H
Sbjct: 29 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
NN + + L L IS+ I + + +
Sbjct: 88 ANNLLYINPEAFQNLPNLQYLLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
+ S + L + + N
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 465 KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQ 510
L+ S + LP L L ++ N++
Sbjct: 201 SGPVILDISR-----------TRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 18/218 (8%), Positives = 56/218 (25%), Gaps = 31/218 (14%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
+L + D +L ++ + +++ + + + +L ++
Sbjct: 23 FAETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + + + ++ + + L
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH---------------- 121
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ + + L L T ++ ++ L
Sbjct: 122 --NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL-- 177
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ L +L++ +S++ L LKN+ L +
Sbjct: 178 ----TKLQNLYLSKNH--ISDLRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 4/146 (2%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC 229
L + L ++ NK + N+ L N + + + + ++
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126
Query: 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
+ + + N + + L + +D LT L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 290 LDLSHNKLSELPDFLNFKVLKELDIS 315
L LS N +S+L K L L++
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/177 (12%), Positives = 50/177 (28%), Gaps = 19/177 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL + + +L ++ + ++++ + + + Q L N+ L L+ NKL++
Sbjct: 30 NLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTD 82
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ N L F + + S S + + L
Sbjct: 83 IKPLAN------LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ + L +I + L+ L +S
Sbjct: 137 E------SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 28/193 (14%), Positives = 66/193 (34%), Gaps = 9/193 (4%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ +K ++ + +++ N++ I Q + +L ++
Sbjct: 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---DIKSVQGIQYLPNVTKLFLNGNK-- 79
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
I L +++ + + + S I +N + +
Sbjct: 80 --LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540
S N + L+ + L L + Q++ I + L L+ L +S N + L +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-A 195
Query: 541 FANLKSLKILDVS 553
A LK+L +L++
Sbjct: 196 LAGLKNLDVLELF 208
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 7e-04
Identities = 21/205 (10%), Positives = 44/205 (21%), Gaps = 7/205 (3%)
Query: 235 DIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDL 292
DI ++++ ++++ + + L V+ L + S + L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 293 SHNKLSE-----LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN 347
N+L + + L K +S N V Q +N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 348 FESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFL 407
+ L S+ +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHM 432
+ L
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLES 207
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 6/178 (3%)
Query: 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
I +E S T ++L H I + ++S L L LS N + ++
Sbjct: 11 IRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLST-LKACKHLALSTNNIEKISSLSG 68
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
+ L+ L + N + + V + + S + E + ++
Sbjct: 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC----LKELNMSSTDP 419
+ L + ++ + E + LK+L+ D
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.92 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.89 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.88 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.81 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.77 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.6 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.6 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.49 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.43 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.37 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.37 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.31 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.18 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.49 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.48 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.01 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.64 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.07 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=8.9e-29 Score=256.59 Aligned_cols=341 Identities=20% Similarity=0.256 Sum_probs=261.8
Q ss_pred ecCCCCCcc-cChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 156 TFCDHELQS-IEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 156 ~l~~n~l~~-ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+..+.++. +....+.+|++|++++|.|+.+. ++ ..++
T Consensus 28 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~---------gl--------------------------------~~L~ 66 (384)
T d2omza2 28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID---------GV--------------------------------EYLN 66 (384)
T ss_dssp HTTCSSTTSEECHHHHTTCCEEECCSSCCCCCT---------TG--------------------------------GGCT
T ss_pred HhCCCCCCCccCHHHhCCCCEEECCCCCCCCcc---------cc--------------------------------ccCC
Confidence 344445544 44444888999999999888653 21 2367
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
+|++|+|++|+|+.+++ ++++++|++|++++|+++++ ++ ++.+++|+.|++++|.++.++.......+..+..
T Consensus 67 nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i---~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~ 139 (384)
T d2omza2 67 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139 (384)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred CCCEEeCcCCcCCCCcc--ccCCcccccccccccccccc---cc--cccccccccccccccccccccccccccccccccc
Confidence 89999999999999886 78999999999999997664 22 5688999999999999988877777777788887
Q ss_pred cCCccccCchhhhhc--------------cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccc
Q psy6452 315 SHNNFESMPLCLQVH--------------FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380 (594)
Q Consensus 315 s~N~l~~lp~~~~~~--------------~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 380 (594)
..|.+..+....... ................|..... ..+..+++++.+++++|.++++.+...
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~l~~n~i~~~~~~~~ 217 (384)
T d2omza2 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 217 (384)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhhccccccccccccccccccc--cccccccccceeeccCCccCCCCcccc
Confidence 777766543211100 0011112333444444444432 234588999999999999999887777
Q ss_pred cCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccc
Q psy6452 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460 (594)
Q Consensus 381 ~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 460 (594)
.++|+.|++++|.+..++. +..+++|+.+++++|. +.+ + ..+..+++|+.|+++++.+++.. .
T Consensus 218 ~~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~-~----------~~~~~~~~L~~L~l~~~~l~~~~--~ 280 (384)
T d2omza2 218 LTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQ-ISN-L----------APLSGLTKLTELKLGANQISNIS--P 280 (384)
T ss_dssp CTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSC-CCC-C----------GGGTTCTTCSEEECCSSCCCCCG--G
T ss_pred cCCCCEEECCCCCCCCcch---hhcccccchhccccCc-cCC-C----------CcccccccCCEeeccCcccCCCC--c
Confidence 8899999999999888864 4688999999999974 222 2 23456789999999999998654 4
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCcc
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~ 540 (594)
+..+..++.++++.| .+..++ .+..+++++.|++++|+|+.++. +..+++|++|++++|+|+.++ .
T Consensus 281 ~~~~~~l~~l~~~~n-----------~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~ 346 (384)
T d2omza2 281 LAGLTALTNLELNEN-----------QLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-S 346 (384)
T ss_dssp GTTCTTCSEEECCSS-----------CCSCCG-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-G
T ss_pred ccccccccccccccc-----------cccccc-ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-h
Confidence 778899999999986 233333 46778999999999999998864 889999999999999999987 5
Q ss_pred ccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCC
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRK 578 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N 578 (594)
+..+++|++|++++|+|+.++. +.++++|++|+|++|
T Consensus 347 l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 347 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence 8999999999999999998865 889999999999998
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=3.1e-27 Score=244.79 Aligned_cols=315 Identities=20% Similarity=0.266 Sum_probs=248.7
Q ss_pred CCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccE
Q psy6452 232 QYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311 (594)
Q Consensus 232 ~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~ 311 (594)
.+.+|++|++++++|+.+.. ++.+++|++|+|++|+|+++ ++ ++.+++|++|++++|++.+++++..+++|+.
T Consensus 42 ~l~~l~~L~l~~~~I~~l~g--l~~L~nL~~L~Ls~N~l~~l---~~--l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~ 114 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDI---TP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 114 (384)
T ss_dssp HHTTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred HhCCCCEEECCCCCCCCccc--cccCCCCCEEeCcCCcCCCC---cc--ccCCccccccccccccccccccccccccccc
Confidence 35789999999999999864 68899999999999998774 33 6799999999999999999999999999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChh-------------------hhccCCCCcEEECCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC-------------------LQVHFCKLVKLDISHNQI 372 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~-------------------~~~~l~~L~~L~Ls~N~l 372 (594)
|++++|.++.++.... ...+..+....|.+..+... .+.............|..
T Consensus 115 L~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (384)
T d2omza2 115 LTLFNNQITDIDPLKN-------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187 (384)
T ss_dssp EECCSSCCCCCGGGTT-------CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred cccccccccccccccc-------cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 9999999998764322 13444555544444433222 122344445555566655
Q ss_pred CCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCcc
Q psy6452 373 KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452 (594)
Q Consensus 373 ~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~ 452 (594)
.........++++.+++++|.+..++.. ...++|+.|++++|. ...+ ..+..+++|+.|++++|.
T Consensus 188 ~~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~--l~~~----------~~l~~l~~L~~L~l~~n~ 252 (384)
T d2omza2 188 SDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQ--LKDI----------GTLASLTNLTDLDLANNQ 252 (384)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSC--CCCC----------GGGGGCTTCSEEECCSSC
T ss_pred ccccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCC--CCCc----------chhhcccccchhccccCc
Confidence 5544445567899999999988888763 467899999999974 2222 234567899999999999
Q ss_pred ccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCC
Q psy6452 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532 (594)
Q Consensus 453 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 532 (594)
+++.. .+..+++|+.|+++++ .+..++ .+..++.++.+++++|.++.++. +..++++++|++++|
T Consensus 253 l~~~~--~~~~~~~L~~L~l~~~-----------~l~~~~-~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n 317 (384)
T d2omza2 253 ISNLA--PLSGLTKLTELKLGAN-----------QISNIS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 317 (384)
T ss_dssp CCCCG--GGTTCTTCSEEECCSS-----------CCCCCG-GGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS
T ss_pred cCCCC--cccccccCCEeeccCc-----------ccCCCC-ccccccccccccccccccccccc-cchhcccCeEECCCC
Confidence 98764 4888999999999985 334444 36678899999999999998754 888999999999999
Q ss_pred CCcccCccccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhhhhCC
Q psy6452 533 KVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594 (594)
Q Consensus 533 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 594 (594)
+++.++. +..+++|++|++++|+|+.++ .+..+++|++|++++|+++.+++ +..+.+|
T Consensus 318 ~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L 375 (384)
T d2omza2 318 NISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRI 375 (384)
T ss_dssp CCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred CCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence 9999864 889999999999999999986 58999999999999999999875 5655543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.1e-26 Score=233.65 Aligned_cols=275 Identities=16% Similarity=0.215 Sum_probs=194.7
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
...+.++.++++++.+|...+ +++++|+|++|+|+. +++..|..+++|++|++++|.+..++ .|.++++|++
T Consensus 10 c~~~~~~C~~~~L~~lP~~l~---~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~ 83 (305)
T d1xkua_ 10 CHLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83 (305)
T ss_dssp EETTEEECTTSCCCSCCCSCC---TTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred ecCCEEEecCCCCCccCCCCC---CCCCEEECcCCcCCC---cChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence 367889999999999998653 689999999999655 77778899999999999999999885 4889999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~ 391 (594)
|++++|+++.+|.... ..+..|++++|.+..++...|.....+..++...|........
T Consensus 84 L~l~~n~l~~l~~~~~--------~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~------------- 142 (305)
T d1xkua_ 84 LYLSKNQLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE------------- 142 (305)
T ss_dssp EECCSSCCSBCCSSCC--------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-------------
T ss_pred ecccCCccCcCccchh--------hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCC-------------
Confidence 9999999999986432 5788999999999999888888888888888888865432211
Q ss_pred CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEe
Q psy6452 392 NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471 (594)
Q Consensus 392 N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 471 (594)
+. .+..+++|+.+++++|+ ++.... ..+++|+.|+
T Consensus 143 ------~~--~~~~l~~L~~l~l~~n~----------------------------------l~~l~~---~~~~~L~~L~ 177 (305)
T d1xkua_ 143 ------NG--AFQGMKKLSYIRIADTN----------------------------------ITTIPQ---GLPPSLTELH 177 (305)
T ss_dssp ------TT--GGGGCTTCCEEECCSSC----------------------------------CCSCCS---SCCTTCSEEE
T ss_pred ------cc--ccccccccCccccccCC----------------------------------ccccCc---ccCCccCEEE
Confidence 00 12344555555555542 111110 0123444555
Q ss_pred CCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCcccCccccCCCCCCEE
Q psy6452 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550 (594)
Q Consensus 472 Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 550 (594)
+++| ......+..+..++.++.|++++|.++.++. .+.++++|++|+|++|+|+.||.+|..+++|++|
T Consensus 178 l~~n----------~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L 247 (305)
T d1xkua_ 178 LDGN----------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247 (305)
T ss_dssp CTTS----------CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEE
T ss_pred CCCC----------cCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEE
Confidence 5544 2333334455556667777777777776643 4677777777777777777777777777777777
Q ss_pred ECcCCCCCccCcc-------cccCCCCcEEEccCCCCc--ccCHhHHhh
Q psy6452 551 DVSYNKLTMLPDG-------FVMLSNLTTFYAQRKYWM--FLTISLLCY 590 (594)
Q Consensus 551 ~Ls~N~l~~ip~~-------l~~l~~L~~L~L~~N~l~--~l~~~~~~~ 590 (594)
+|++|+|+.|+.. ...+.+|+.|+|++|+|+ .+++..|..
T Consensus 248 ~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~ 296 (305)
T d1xkua_ 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296 (305)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred ECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence 7777777766432 235567778888888776 466666644
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=3.5e-25 Score=222.50 Aligned_cols=250 Identities=19% Similarity=0.247 Sum_probs=171.8
Q ss_pred CCEEEcCCCCCCCCCC-cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEE
Q psy6452 287 LIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365 (594)
Q Consensus 287 L~~L~Ls~N~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 365 (594)
++.+|-+++.++++|. + .+++++|+|++|+|+.+|+..+.. .++|++|++++|.+..+++..|.++++|++|
T Consensus 12 ~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~-----l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L 84 (305)
T d1xkua_ 12 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKN-----LKNLHTLILINNKISKISPGAFAPLVKLERL 84 (305)
T ss_dssp TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTT-----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhc-----cccccccccccccccccchhhhhCCCccCEe
Confidence 4445555555555542 2 134555555555555554432211 1355555555555555555556667777777
Q ss_pred ECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcE
Q psy6452 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLIS 445 (594)
Q Consensus 366 ~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~ 445 (594)
++++|+++.++.. ....+..|.+.+|.+..++... +.....+..++...|.
T Consensus 85 ~l~~n~l~~l~~~-~~~~l~~L~~~~n~l~~l~~~~-~~~~~~~~~l~~~~n~--------------------------- 135 (305)
T d1xkua_ 85 YLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNP--------------------------- 135 (305)
T ss_dssp ECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSC---------------------------
T ss_pred cccCCccCcCccc-hhhhhhhhhccccchhhhhhhh-hhcccccccccccccc---------------------------
Confidence 7777777766543 3345666666666666665544 2344444444444432
Q ss_pred EEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccc-cccccCCCCC
Q psy6452 446 LHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICL 524 (594)
Q Consensus 446 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L 524 (594)
..........+..+++|+.+++++| .+..+|..+ +++|+.|++++|.++.. +..|..++.+
T Consensus 136 -----~~~~~~~~~~~~~l~~L~~l~l~~n-----------~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l 197 (305)
T d1xkua_ 136 -----LKSSGIENGAFQGMKKLSYIRIADT-----------NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197 (305)
T ss_dssp -----CCGGGBCTTGGGGCTTCCEEECCSS-----------CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred -----ccccCCCccccccccccCccccccC-----------CccccCccc--CCccCEEECCCCcCCCCChhHhhccccc
Confidence 0122334456788899999999985 344555443 57999999999999854 5569999999
Q ss_pred cEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCcccCHhHHhh
Q psy6452 525 EKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCY 590 (594)
Q Consensus 525 ~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~l~~~~~~~ 590 (594)
++|++++|+++.++. ++.++++|++|+|++|+|+.||.++..+++|++|+|++|+|+.|+...|+.
T Consensus 198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~ 264 (305)
T d1xkua_ 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264 (305)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccC
Confidence 999999999998854 889999999999999999999999999999999999999999999888764
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.92 E-value=1.7e-25 Score=225.78 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=103.9
Q ss_pred CcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCC
Q psy6452 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522 (594)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 522 (594)
++.+++++|++++..+..+..+..+ .++++++ +..+.+|..+..+++++.|++++|.++..+..+..++
T Consensus 176 ~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~----------~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~ 244 (313)
T d1ogqa_ 176 FTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN----------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCCCS-EEECCSS----------EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred ccccccccccccccccccccccccc-ccccccc----------ccccccccccccccccccccccccccccccccccccc
Confidence 3556666667777777777666544 5777776 6677788888888899999999999886666788889
Q ss_pred CCcEEEccCCCCc-ccCccccCCCCCCEEECcCCCCC-ccCcccccCCCCcEEEccCCC-Cccc
Q psy6452 523 CLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQRKY-WMFL 583 (594)
Q Consensus 523 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~~l 583 (594)
+|+.|+|++|+|+ .+|.+|+.+++|++|+|++|+|+ .||+ +..+++|+.+++++|+ +...
T Consensus 245 ~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence 9999999999999 78989999999999999999999 7875 5788899999999998 4443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.92 E-value=1.8e-22 Score=205.69 Aligned_cols=304 Identities=22% Similarity=0.253 Sum_probs=199.3
Q ss_pred hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCCCccc
Q psy6452 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFV 249 (594)
Q Consensus 170 l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l 249 (594)
..++++|||++|.++.++ ...++|++|+|++|+|+.+
T Consensus 37 ~~~l~~LdLs~~~L~~lp-------------------------------------------~~~~~L~~L~Ls~N~l~~l 73 (353)
T d1jl5a_ 37 DRQAHELELNNLGLSSLP-------------------------------------------ELPPHLESLVASCNSLTEL 73 (353)
T ss_dssp HHTCSEEECTTSCCSCCC-------------------------------------------SCCTTCSEEECCSSCCSSC
T ss_pred HcCCCEEEeCCCCCCCCC-------------------------------------------CCCCCCCEEECCCCCCccc
Confidence 357999999999998766 1146899999999999999
Q ss_pred chHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhc
Q psy6452 250 QESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVH 329 (594)
Q Consensus 250 ~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 329 (594)
|. .+.+|+.|++++|+++.+..+| +.|++|++++|.+..+|.+..+++|++|++++|.++..+...
T Consensus 74 p~----~~~~L~~L~l~~n~l~~l~~lp-------~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~--- 139 (353)
T d1jl5a_ 74 PE----LPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--- 139 (353)
T ss_dssp CC----CCTTCCEEECCSSCCSCCCSCC-------TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---
T ss_pred cc----chhhhhhhhhhhcccchhhhhc-------cccccccccccccccccchhhhccceeecccccccccccccc---
Confidence 85 3578999999999987764332 469999999999999999999999999999999998876432
Q ss_pred cccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCCCCCCCchhhhcccCcc
Q psy6452 330 FYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCL 409 (594)
Q Consensus 330 ~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~~~~ip~~~~~~~~~~L 409 (594)
..+..+.+..+...... .+..++.++.|++++|.+..+.... ...+.+...++.+..++.. ..++.+
T Consensus 140 ------~~l~~l~~~~~~~~~~~--~l~~l~~l~~L~l~~n~~~~~~~~~--~~~~~l~~~~~~~~~~~~~---~~l~~L 206 (353)
T d1jl5a_ 140 ------PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPEL---QNLPFL 206 (353)
T ss_dssp ------TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCC---TTCTTC
T ss_pred ------ccccchhhccccccccc--cccccccceeccccccccccccccc--ccccccccccccccccccc---cccccc
Confidence 56778888777665443 2346788999999999887654332 3456677777777777663 468889
Q ss_pred cEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccc
Q psy6452 410 KELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW 489 (594)
Q Consensus 410 ~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~ 489 (594)
+.+++++|. ...+|. ...++..+.+..+.+.... .....+...++..+... .+.
T Consensus 207 ~~l~l~~n~--~~~~~~------------~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~--------~l~ 260 (353)
T d1jl5a_ 207 TTIYADNNL--LKTLPD------------LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFS--------GLS 260 (353)
T ss_dssp CEEECCSSC--CSSCCS------------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--------EES
T ss_pred ccccccccc--cccccc------------ccccccccccccccccccc----ccccccccccccccccc--------ccc
Confidence 999998864 222222 2346677777777665432 12334445555443111 011
Q ss_pred cCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCcccccCCC
Q psy6452 490 ELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSN 569 (594)
Q Consensus 490 ~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~ 569 (594)
.++ ......++..+.+..++. .+++|++|+|++|+|+.+|.. +++|+.|+|++|+|+.+|+. +++
T Consensus 261 ~l~------~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~ 325 (353)
T d1jl5a_ 261 ELP------PNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQN 325 (353)
T ss_dssp CCC------TTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTT
T ss_pred ccc------chhcccccccCccccccc---cCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCC
Confidence 111 123344445554444432 234555566666655555532 34555556665655555542 345
Q ss_pred CcEEEccCCCCcccC
Q psy6452 570 LTTFYAQRKYWMFLT 584 (594)
Q Consensus 570 L~~L~L~~N~l~~l~ 584 (594)
|++|++++|+++.+|
T Consensus 326 L~~L~L~~N~L~~lp 340 (353)
T d1jl5a_ 326 LKQLHVEYNPLREFP 340 (353)
T ss_dssp CCEEECCSSCCSSCC
T ss_pred CCEEECcCCcCCCCC
Confidence 555566666555554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.3e-24 Score=208.98 Aligned_cols=201 Identities=21% Similarity=0.318 Sum_probs=129.5
Q ss_pred cCCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccC
Q psy6452 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382 (594)
Q Consensus 303 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 382 (594)
+.....+.+++++++.++.+|+. +|+++++|+|++|+|+.++...|.++++|++|+|++|+|+.++.....+
T Consensus 6 ~~~~~~~~~v~C~~~~L~~iP~~--------lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~ 77 (266)
T d1p9ag_ 6 VSKVASHLEVNCDKRNLTALPPD--------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (266)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC--------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred EcccCCCeEEEccCCCCCeeCcC--------cCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccc
Confidence 34556677788888888888853 3467888999999998888888889999999999999998876655556
Q ss_pred CccEEeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccc
Q psy6452 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462 (594)
Q Consensus 383 ~L~~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 462 (594)
+|++|++++|.+..++..+ ..+++|+.|++++ |.+.......
T Consensus 78 ~L~~L~Ls~N~l~~~~~~~--~~l~~L~~L~l~~----------------------------------~~~~~~~~~~-- 119 (266)
T d1p9ag_ 78 VLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSF----------------------------------NRLTSLPLGA-- 119 (266)
T ss_dssp TCCEEECCSSCCSSCCCCT--TTCTTCCEEECCS----------------------------------SCCCCCCSST--
T ss_pred ccccccccccccccccccc--ccccccccccccc----------------------------------cccceeeccc--
Confidence 6666666666555554432 3333333333333 3332222223
Q ss_pred cCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-ccCCCCCcEEEccCCCCcccCc-c
Q psy6452 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISHNKVYKLPE-S 540 (594)
Q Consensus 463 ~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~ 540 (594)
+..+.+++.|++++|.++.+|.. +..+++|+.|++++|+|+.++. .
T Consensus 120 --------------------------------~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~ 167 (266)
T d1p9ag_ 120 --------------------------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (266)
T ss_dssp --------------------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred --------------------------------cccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence 33445566666666666655543 4556666666666666666543 4
Q ss_pred ccCCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCc
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWM 581 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~ 581 (594)
|..+++|++|+|++|+|+.||+++..+++|+.|+|++|||.
T Consensus 168 ~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 56666666666666666666666556666666666666665
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4e-23 Score=205.16 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=182.7
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
....++.++++||..+++++++|+|++|+|+.+++ ..|.++
T Consensus 15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~---------------------------------------~~f~~l 55 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPA---------------------------------------ASFRAC 55 (284)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECT---------------------------------------TTTTTC
T ss_pred EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCH---------------------------------------HHhhcc
Confidence 34566788999999888899999999999998762 234567
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECC-CCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCcc
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLS-HNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLK 310 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls-~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~ 310 (594)
++|++|++++|+|..++...+..+..++.+... .|.++ .+++..|+++++|++|++++|.+..++ .+....+|+
T Consensus 56 ~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~---~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 132 (284)
T d1ozna_ 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR---SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (284)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccc---cccchhhcccccCCEEecCCcccccccccccchhcccc
Confidence 899999999999999999999999999999876 55544 467788899999999999999998766 477889999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc--CCccEEe
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT--HTLQTFS 388 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 388 (594)
.+++++|.++.+|...+.. ..+|+.|++++|+++.+++.+|.++++|+.+++++|+++++.+..+. ++|++|+
T Consensus 133 ~l~l~~N~l~~i~~~~f~~-----~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~ 207 (284)
T d1ozna_ 133 YLYLQDNALQALPDDTFRD-----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (284)
T ss_dssp EEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred hhhhccccccccChhHhcc-----ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence 9999999999998765432 26899999999999999999999999999999999999988766544 5888999
Q ss_pred CCCCCCCCCCchhhhcccCcccEEECcCCC
Q psy6452 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418 (594)
Q Consensus 389 L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~ 418 (594)
+++|.+..++... +..+++|+.|++++|.
T Consensus 208 l~~N~i~~~~~~~-~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 208 LFANNLSALPTEA-LAPLRALQYLRLNDNP 236 (284)
T ss_dssp CCSSCCSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred ccccccccccccc-cccccccCEEEecCCC
Confidence 9998888888765 5778888888888864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.1e-22 Score=200.07 Aligned_cols=133 Identities=26% Similarity=0.315 Sum_probs=101.9
Q ss_pred cCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCcc
Q psy6452 231 KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK 310 (594)
Q Consensus 231 ~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~ 310 (594)
.....+..+++++++|+.+|+.+. ++|++|+|++|+|+ .+++..|..+++|++|+|++|+|+.++.+..+++|+
T Consensus 7 ~~~~~~~~v~C~~~~L~~iP~~lp---~~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~ 80 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80 (266)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCC
T ss_pred cccCCCeEEEccCCCCCeeCcCcC---cCCCEEECcCCcCC---CcCHHHhhcccccccccccccccccccccccccccc
Confidence 456778889999999999987543 57999999999955 477888899999999999999999999888999999
Q ss_pred EEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC
Q psy6452 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 311 ~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
+|+|++|+++.++..+.. .++|+.|++++|.+..++...+..+.+++.|++++|.++.+
T Consensus 81 ~L~Ls~N~l~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l 139 (266)
T d1p9ag_ 81 TLDLSHNQLQSLPLLGQT------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (266)
T ss_dssp EEECCSSCCSSCCCCTTT------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred cccccccccccccccccc------ccccccccccccccceeecccccccccccccccccccccee
Confidence 999999999887654321 14566666666666666555555555666666555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-22 Score=199.48 Aligned_cols=219 Identities=18% Similarity=0.278 Sum_probs=135.7
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCcccc--CCccEE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT--HTLQTF 387 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 387 (594)
..+++++++++.+|.. +|+++++|+|++|+|+.++...|.++++|++|++++|++..+....+. ..+..+
T Consensus 14 ~~v~c~~~~L~~iP~~--------ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l 85 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPVG--------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (284)
T ss_dssp CEEECCSSCCSSCCTT--------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCCCCCCccCCC--------CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccc
Confidence 3457777777877743 346788888888888888888888888888888888888877655443 345554
Q ss_pred eCC-CCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccCCC
Q psy6452 388 SMN-HNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466 (594)
Q Consensus 388 ~L~-~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 466 (594)
... .+.+..++... +..+++|+.|++++ |.+.......+..+.+
T Consensus 86 ~~~~~~~~~~l~~~~-~~~l~~L~~L~l~~----------------------------------n~~~~~~~~~~~~~~~ 130 (284)
T d1ozna_ 86 DLSDNAQLRSVDPAT-FHGLGRLHTLHLDR----------------------------------CGLQELGPGLFRGLAA 130 (284)
T ss_dssp ECCSCTTCCCCCTTT-TTTCTTCCEEECTT----------------------------------SCCCCCCTTTTTTCTT
T ss_pred ccccccccccccchh-hcccccCCEEecCC----------------------------------cccccccccccchhcc
Confidence 443 33455554433 34455555555554 4444444455555566
Q ss_pred cceEeCCCCcCcccccccccccccCc-ccccCCCCCcEEeCccccCccccc-cccCCCCCcEEEccCCCCccc-CccccC
Q psy6452 467 IKYLNCSNDIDHRKSQDFVNVLWELP-LSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL-PESFAN 543 (594)
Q Consensus 467 L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 543 (594)
|+.+++++| .+..+| ..+..+++|+.|++++|+|+.++. .|.++++|+++++++|+++.+ |.+|..
T Consensus 131 L~~l~l~~N-----------~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~ 199 (284)
T d1ozna_ 131 LQYLYLQDN-----------ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (284)
T ss_dssp CCEEECCSS-----------CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhhccc-----------cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhh
Confidence 666666653 233333 334455666666666666665543 356666666666666666655 446666
Q ss_pred CCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcc
Q psy6452 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMF 582 (594)
Q Consensus 544 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ 582 (594)
+++|++|++++|+++.++.. |..+++|++|++++|++..
T Consensus 200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 66666666666666655433 6666666666666666653
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.89 E-value=3.1e-23 Score=208.90 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=76.3
Q ss_pred EEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-cccccccCCCC
Q psy6452 445 SLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLIC 523 (594)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~ 523 (594)
.+++..+...+..+..+..+++++.+++++| +..+. +..+..+++|+.|+|++|+|+ .+|+.|.++++
T Consensus 201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----------~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN----------SLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSS----------EECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ccccccccccccccccccccccccccccccc----------ccccc-ccccccccccccccCccCeecccCChHHhCCCC
Confidence 4555555556666666677777777777775 33333 335677788999999999988 78888888999
Q ss_pred CcEEEccCCCCc-ccCccccCCCCCCEEECcCCCC
Q psy6452 524 LEKLNISHNKVY-KLPESFANLKSLKILDVSYNKL 557 (594)
Q Consensus 524 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 557 (594)
|++|+|++|+|+ .||. +..+++|+.+++++|+.
T Consensus 270 L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred CCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 999999999988 6774 67788899999998863
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.88 E-value=9.5e-21 Score=192.68 Aligned_cols=314 Identities=22% Similarity=0.256 Sum_probs=192.9
Q ss_pred cCccEEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccC
Q psy6452 150 EALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC 229 (594)
Q Consensus 150 ~~L~~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~ 229 (594)
.+++.+++++++++++|. .+++|++|+|++|+|+.++.
T Consensus 38 ~~l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~----------------------------------------- 75 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPE----------------------------------------- 75 (353)
T ss_dssp HTCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCC-----------------------------------------
T ss_pred cCCCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCccccc-----------------------------------------
Confidence 367899999999999995 57899999999999998761
Q ss_pred ccCCCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCc
Q psy6452 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL 309 (594)
Q Consensus 230 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L 309 (594)
.+.+|+.|++++|+++.++. -.+.|++|++++|.++. +|. ++.+++|++|++++|.+...+.. ...+
T Consensus 76 --~~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n~l~~---lp~--~~~l~~L~~L~l~~~~~~~~~~~--~~~l 142 (353)
T d1jl5a_ 76 --LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK---LPE--LQNSSFLKIIDVDNNSLKKLPDL--PPSL 142 (353)
T ss_dssp --CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS---CCC--CTTCTTCCEEECCSSCCSCCCCC--CTTC
T ss_pred --chhhhhhhhhhhcccchhhh----hcccccccccccccccc---ccc--hhhhccceeeccccccccccccc--cccc
Confidence 12456666777776666543 12356677777776544 332 24566677777776666655432 2345
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeC
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSM 389 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L 389 (594)
..+.+.++....... ......++.+++++|.+..++... ...+.+..+++.+..++.....+.++.+++
T Consensus 143 ~~l~~~~~~~~~~~~-------l~~l~~l~~L~l~~n~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l 211 (353)
T d1jl5a_ 143 EFIAAGNNQLEELPE-------LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPELQNLPFLTTIYA 211 (353)
T ss_dssp CEEECCSSCCSSCCC-------CTTCTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred cchhhcccccccccc-------ccccccceeccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 555555554443211 112245566666666665544322 234556666666655555455556666666
Q ss_pred CCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCccccccC-CCcc
Q psy6452 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL-KNIK 468 (594)
Q Consensus 390 ~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 468 (594)
++|....++.. ..++..+.+.++.. ...+ .....+...++..+.+.+.. .+ ....
T Consensus 212 ~~n~~~~~~~~-----~~~l~~~~~~~~~~--~~~~------------~~~~~l~~~~~~~~~~~~l~-----~l~~~~~ 267 (353)
T d1jl5a_ 212 DNNLLKTLPDL-----PPSLEALNVRDNYL--TDLP------------ELPQSLTFLDVSENIFSGLS-----ELPPNLY 267 (353)
T ss_dssp CSSCCSSCCSC-----CTTCCEEECCSSCC--SCCC------------CCCTTCCEEECCSSCCSEES-----CCCTTCC
T ss_pred ccccccccccc-----cccccccccccccc--cccc------------cccccccccccccccccccc-----cccchhc
Confidence 66655555432 33455555555431 1111 11234555555554433221 11 2233
Q ss_pred eEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCC
Q psy6452 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548 (594)
Q Consensus 469 ~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 548 (594)
..++..+ .+..++ ..+++|++|+|++|+|+.+|.. +++|+.|+|++|+|+++|.. +++|+
T Consensus 268 ~~~~~~~-----------~~~~~~---~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~ 327 (353)
T d1jl5a_ 268 YLNASSN-----------EIRSLC---DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLK 327 (353)
T ss_dssp EEECCSS-----------CCSEEC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred ccccccC-----------cccccc---ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCC
Confidence 4444443 222222 2357899999999999999864 57899999999999999863 56899
Q ss_pred EEECcCCCCCccCcccccCCCCcEEEcc
Q psy6452 549 ILDVSYNKLTMLPDGFVMLSNLTTFYAQ 576 (594)
Q Consensus 549 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~ 576 (594)
+|+|++|+|+.+|+.. .+|+.|.+.
T Consensus 328 ~L~L~~N~L~~lp~~~---~~L~~L~~~ 352 (353)
T d1jl5a_ 328 QLHVEYNPLREFPDIP---ESVEDLRMN 352 (353)
T ss_dssp EEECCSSCCSSCCCCC---TTCCEEECC
T ss_pred EEECcCCcCCCCCccc---cccCeeECc
Confidence 9999999999998743 467777664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.81 E-value=1.7e-19 Score=172.51 Aligned_cols=102 Identities=22% Similarity=0.332 Sum_probs=58.1
Q ss_pred ccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEecc
Q psy6452 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315 (594)
Q Consensus 236 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls 315 (594)
+..++++.++++++.. ++.+.+|++|++++|.|+++ + + +..+++|++|++++|.++.++.+..+++|++++++
T Consensus 21 ~~~~~l~~~~~~d~~~--~~~l~~L~~L~l~~~~i~~l---~-~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~ 93 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI---E-G-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93 (227)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC---T-T-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC
T ss_pred HHHHHhCCCCcCCcCC--HHHcCCcCEEECCCCCCCcc---h-h-HhcCCCCcEeecCCceeeccccccccccccccccc
Confidence 3444555555555443 34556666666666665442 1 1 34566666666666666665556666666666666
Q ss_pred CCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCC
Q psy6452 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 316 ~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
+|.++.++. +.++++|+.++++++....+
T Consensus 94 ~n~~~~i~~-------------------------------l~~l~~L~~l~l~~~~~~~~ 122 (227)
T d1h6ua2 94 GNPLKNVSA-------------------------------IAGLQSIKTLDLTSTQITDV 122 (227)
T ss_dssp SCCCSCCGG-------------------------------GTTCTTCCEEECTTSCCCCC
T ss_pred ccccccccc-------------------------------cccccccccccccccccccc
Confidence 665554431 23566777777777766544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=3.3e-18 Score=163.36 Aligned_cols=201 Identities=14% Similarity=0.164 Sum_probs=143.2
Q ss_pred EecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 155 RTFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 155 l~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
..+..++++.+.... +.+|++|++++|.|+.+. + +..+
T Consensus 24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~---------~--------------------------------l~~l 62 (227)
T d1h6ua2 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE---------G--------------------------------VQYL 62 (227)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT---------T--------------------------------GGGC
T ss_pred HHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch---------h--------------------------------HhcC
Confidence 344555565554434 778888888888777643 1 1346
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEe
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~ 313 (594)
++|++|++++|+|+.+.+ |..+++|+++++++|.++.+. .+..+++|++++++++....++.+...+.++.+.
T Consensus 63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-----~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 135 (227)
T d1h6ua2 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135 (227)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred CCCcEeecCCceeecccc--ccccccccccccccccccccc-----cccccccccccccccccccccchhccccchhhhh
Confidence 788888888888887765 678888888888888866542 2457788888888888887777777778888888
Q ss_pred ccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCCC
Q psy6452 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNI 393 (594)
Q Consensus 314 Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N~ 393 (594)
++++.+...+.. ....+|++|++++|.+..++. +.++++|+.|++++|+++++++....++|++|++++|.
T Consensus 136 ~~~~~~~~~~~~-------~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~ 206 (227)
T d1h6ua2 136 LDLNQITNISPL-------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206 (227)
T ss_dssp CCSSCCCCCGGG-------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred chhhhhchhhhh-------ccccccccccccccccccchh--hcccccceecccCCCccCCChhhcCCCCCCEEECcCCc
Confidence 888877764421 223578888888888776654 45778888888888888877665556677777777777
Q ss_pred CCCCCchhhhcccCcccEEECc
Q psy6452 394 GMKIPEWFWYQEFLCLKELNMS 415 (594)
Q Consensus 394 ~~~ip~~~~~~~~~~L~~L~Ls 415 (594)
+..+++ ++.+++|+.|+++
T Consensus 207 lt~i~~---l~~l~~L~~L~ls 225 (227)
T d1h6ua2 207 ISDVSP---LANTSNLFIVTLT 225 (227)
T ss_dssp CCBCGG---GTTCTTCCEEEEE
T ss_pred CCCCcc---cccCCCCCEEEee
Confidence 777764 3567777777765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-19 Score=191.01 Aligned_cols=390 Identities=15% Similarity=0.050 Sum_probs=208.8
Q ss_pred CccEEecCCCCCcccChhh----hccCcEEEccCccccccccccccCCCCCccccCCCCccccccccccccccccccccc
Q psy6452 151 ALSTRTFCDHELQSIEDDI----LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226 (594)
Q Consensus 151 ~L~~l~l~~n~l~~ip~~~----l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~ 226 (594)
+|+.+++++++++...-.. +++++.|+|++|.|+..... .+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~-----------------------------------~l 47 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-----------------------------------DI 47 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH-----------------------------------HH
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHH-----------------------------------HH
Confidence 4567777777776543111 66777777777766632200 00
Q ss_pred ccCccCCCcccEEEccCCCCcccchHhhh-----cCCCCCEEECCCCCCCCcccc-chhhhhcCCCCCEEEcCCCCCCCC
Q psy6452 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQ-----KLTNLTVLDLSHNNHQDINFV-QESMSQKLTNLIVLDLSHNKLSEL 300 (594)
Q Consensus 227 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~-----~l~~L~~L~Ls~N~l~~i~~l-~~~~~~~l~~L~~L~Ls~N~l~~l 300 (594)
...+...++|++|+|++|+|+......+. ...+|++|+|++|++++.... -...+..+++|++|++++|.++..
T Consensus 48 ~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 127 (460)
T d1z7xw1 48 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127 (460)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence 11123456777777777777643322221 224677777777776542110 123345667777777777776531
Q ss_pred C--C----c-CCCcCccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCC-----hhhhccCCCCcEEECC
Q psy6452 301 P--D----F-LNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP-----LCLQVHFCKLVKLDIS 368 (594)
Q Consensus 301 p--~----~-~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls 368 (594)
. . + ........+......+........ .........++.++++++.+.... ............+++.
T Consensus 128 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 206 (460)
T d1z7xw1 128 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL-ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 206 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred hhhhhhhcccccccccccccccccccchhhhccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 0 0 111222333333333221110000 001122245666777666554211 1111223355667777
Q ss_pred CCCCCCCCCc------cccCCccEEeCCCCCCCCCCc----hhhhcccCcccEEECcCCCCccCCccHHHhhhccccccc
Q psy6452 369 HNQIKILHKP------RCTHTLQTFSMNHNIGMKIPE----WFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENG 438 (594)
Q Consensus 369 ~N~l~~l~~~------~~~~~L~~L~L~~N~~~~ip~----~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~ 438 (594)
.+.+...... .....++.+++++|.+..... .........++.+++++|.. ........ ...+.
T Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i-~~~~~~~~-----~~~l~ 280 (460)
T d1z7xw1 207 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDL-----CRVLR 280 (460)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHH-----HHHHH
T ss_pred cccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccc-cccccccc-----ccccc
Confidence 6665432211 112456777777764422110 11123456788888887641 11111001 11123
Q ss_pred ccCCCcEEEcCCccccccCcccc-----ccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCc-
Q psy6452 439 VFSNLISLHMQNTAAVMSNVSQL-----KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN- 512 (594)
Q Consensus 439 ~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~- 512 (594)
..+.++.+++++|.++......+ .....|+.++++++.+.... ...+...+...++|++|+|++|+|+
T Consensus 281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~------~~~l~~~~~~~~~L~~L~Ls~N~i~~ 354 (460)
T d1z7xw1 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC------CSHFSSVLAQNRFLLELQISNNRLED 354 (460)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG------HHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred ccccccccccccccccccccchhhccccccccccccccccccchhhhh------hhhcccccccccchhhhheeeecccC
Confidence 34577888888887765433332 23457888888886433211 1112223445678999999999887
Q ss_pred ----ccccccc-CCCCCcEEEccCCCCcc-----cCccccCCCCCCEEECcCCCCCc-----cCcccc-cCCCCcEEEcc
Q psy6452 513 ----CIPEDIG-NLICLEKLNISHNKVYK-----LPESFANLKSLKILDVSYNKLTM-----LPDGFV-MLSNLTTFYAQ 576 (594)
Q Consensus 513 ----~ip~~~~-~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----ip~~l~-~l~~L~~L~L~ 576 (594)
.+++.+. ..+.|++|+|++|+|+. ++..+..+++|++|+|++|+|+. +.+.+. ....|+.|++.
T Consensus 355 ~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~ 434 (460)
T d1z7xw1 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred cccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECC
Confidence 3444443 46789999999999873 44566777899999999999882 233333 33479999999
Q ss_pred CCCCcccCHhHH
Q psy6452 577 RKYWMFLTISLL 588 (594)
Q Consensus 577 ~N~l~~l~~~~~ 588 (594)
+|.+..-....+
T Consensus 435 ~~~~~~~~~~~l 446 (460)
T d1z7xw1 435 DIYWSEEMEDRL 446 (460)
T ss_dssp TCCCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 998875444444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-19 Score=190.99 Aligned_cols=367 Identities=13% Similarity=0.070 Sum_probs=237.7
Q ss_pred ccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCCcccEEEccCCCCcccc
Q psy6452 171 VQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQ 250 (594)
Q Consensus 171 ~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 250 (594)
.+|++||+++|++++.... ..+..+++++.|+|++|+|+...
T Consensus 2 ~~l~~ld~~~~~i~~~~~~--------------------------------------~l~~~l~~l~~L~L~~~~i~~~~ 43 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWA--------------------------------------ELLPLLQQCQVVRLDDCGLTEAR 43 (460)
T ss_dssp EEEEEEEEESCCCCHHHHH--------------------------------------HHHHHHTTCSEEEEESSCCCHHH
T ss_pred CCCCEEEeeCCcCChHHHH--------------------------------------HHHHhCCCCCEEEeCCCCCCHHH
Confidence 3689999999999874310 01123578999999999998433
Q ss_pred ----hHhhhcCCCCCEEECCCCCCCCc--cccchhhhhcCCCCCEEEcCCCCCCCC-----C-CcCCCcCccEEeccCCc
Q psy6452 251 ----ESMSQKLTNLTVLDLSHNNHQDI--NFVQESMSQKLTNLIVLDLSHNKLSEL-----P-DFLNFKVLKELDISHNN 318 (594)
Q Consensus 251 ----~~~f~~l~~L~~L~Ls~N~l~~i--~~l~~~~~~~l~~L~~L~Ls~N~l~~l-----p-~~~~l~~L~~L~Ls~N~ 318 (594)
..++..+++|++|||++|.|++. ..+.........+|++|+|++|.++.. + .+..+++|++|++++|.
T Consensus 44 ~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 44 CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 34467899999999999997531 112222222345899999999999843 2 36788999999999999
Q ss_pred cccCchhhhhccccccCCCcceEEcCCCCCCCCC----hhhhccCCCCcEEECCCCCCCCCCCc-------cccCCccEE
Q psy6452 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP----LCLQVHFCKLVKLDISHNQIKILHKP-------RCTHTLQTF 387 (594)
Q Consensus 319 l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~~~L~~L 387 (594)
++..+...........-............+.... ...+.....++.++++++.+...... ........+
T Consensus 124 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l 203 (460)
T d1z7xw1 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 203 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred chhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8853322111111111223445555555444222 12234567899999998876532111 112256678
Q ss_pred eCCCCCCCCCCch---hhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCc----cc
Q psy6452 388 SMNHNIGMKIPEW---FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV----SQ 460 (594)
Q Consensus 388 ~L~~N~~~~ip~~---~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~ 460 (594)
.+..+.+...... ......+.++.+++++|......+.. ...........++.+++++|.+..... ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~-----~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~ 278 (460)
T d1z7xw1 204 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE-----LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278 (460)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-----HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred ccccccccchhhhcccccccccccccccchhhccccccccch-----hhccccccccccccccccccccccccccccccc
Confidence 8887755443221 12356788999999987521111111 111122345689999999998865432 34
Q ss_pred cccCCCcceEeCCCCcCcccccccccccccCcccc-cCCCCCcEEeCccccCcc-----ccccccCCCCCcEEEccCCCC
Q psy6452 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI-LYLSSIQELHLSNVQLNC-----IPEDIGNLICLEKLNISHNKV 534 (594)
Q Consensus 461 ~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~-~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l 534 (594)
+...+.++.+++++|.+..... ..+...+ .....|+.+++++|.++. +...+...++|++|+|++|+|
T Consensus 279 l~~~~~l~~l~l~~n~i~~~~~------~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i 352 (460)
T d1z7xw1 279 LRAKESLKELSLAGNELGDEGA------RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352 (460)
T ss_dssp HHHCTTCCEEECTTCCCHHHHH------HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred cccccccccccccccccccccc------chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecc
Confidence 5678899999999975432111 1111111 134589999999999883 333456778999999999999
Q ss_pred c-----ccCcccc-CCCCCCEEECcCCCCCc-----cCcccccCCCCcEEEccCCCCcccCHh
Q psy6452 535 Y-----KLPESFA-NLKSLKILDVSYNKLTM-----LPDGFVMLSNLTTFYAQRKYWMFLTIS 586 (594)
Q Consensus 535 ~-----~lp~~~~-~l~~L~~L~Ls~N~l~~-----ip~~l~~l~~L~~L~L~~N~l~~l~~~ 586 (594)
+ .++..+. ..+.|++|+|++|+|+. +++.+..+++|++|+|++|+|+.-...
T Consensus 353 ~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 415 (460)
T d1z7xw1 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415 (460)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred cCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence 7 3444443 46789999999999983 556677889999999999999864433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=5e-18 Score=160.09 Aligned_cols=164 Identities=18% Similarity=0.263 Sum_probs=110.3
Q ss_pred ecCCCCCcccCh-hhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 156 TFCDHELQSIED-DILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 156 ~l~~n~l~~ip~-~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+..+.++.+.. .-+.+|++|++++|.++++. ++ ..++
T Consensus 30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~---------~l--------------------------------~~l~ 68 (210)
T d1h6ta2 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---------GI--------------------------------QYLP 68 (210)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT---------TG--------------------------------GGCT
T ss_pred HhCcCccCCccCHHHhcCccEEECcCCCCCCch---------hH--------------------------------hhCC
Confidence 344455544332 23778888888888877654 11 2357
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
+|++|+|++|+|+.+++ ++.+++|++|++++|+++++ + .+..+++|+.|++++|.+..++.+..+++|+.+++
T Consensus 69 ~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l---~--~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~ 141 (210)
T d1h6ta2 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL---S--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141 (210)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG---G--GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEeCCCccccCccc--cccCcccccccccccccccc---c--ccccccccccccccccccccccccccccccccccc
Confidence 78888888888887775 56788888888888886653 3 24577888888888888877777777888888888
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
++|.++.++.. ...++|+.+++++|++++++. +.++++|+.|++++|+|++++
T Consensus 142 ~~n~l~~~~~~-------~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~ 194 (210)
T d1h6ta2 142 GNNKITDITVL-------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (210)
T ss_dssp CSSCCCCCGGG-------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred ccccccccccc-------ccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh
Confidence 88887765421 112466777777777666653 446666777777777666554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=9.3e-19 Score=168.79 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=157.0
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.++..+++||..+++++++|+|++|+|+.++ +..|.++
T Consensus 12 ~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~---------------------------------------~~~f~~l 52 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ---------------------------------------KGAFSGF 52 (242)
T ss_dssp EEEEESCSCSSCCSCSCSCCSEEEEESCCCCEEC---------------------------------------TTTTTTC
T ss_pred EEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccC---------------------------------------hhHhhcc
Confidence 4556677889999888889999999999998766 1234567
Q ss_pred CcccEEEccCCCCcc-cchHhhhcCCCCCEEECCC-CCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcC---CCcC
Q psy6452 234 HDIFTVNLSHQDINF-VQESMSQKLTNLTVLDLSH-NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL---NFKV 308 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~Ls~-N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~---~l~~ 308 (594)
++|++|++++|.+.. ++...|.++++++++.+.. |. +..++...|.++++|++|++++|.+..++.+. .+..
T Consensus 53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~---l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~ 129 (242)
T d1xwdc1 53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN---LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129 (242)
T ss_dssp TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT---CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSC
T ss_pred chhhhhhhccccccceeecccccccccccccccccccc---ccccccccccccccccccccchhhhcccccccccccccc
Confidence 889999999998764 6677788889999988764 55 33466777888999999999999888776543 4556
Q ss_pred ccEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcE-EECCCCCCCCCCCcccc--CCcc
Q psy6452 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK-LDISHNQIKILHKPRCT--HTLQ 385 (594)
Q Consensus 309 L~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~--~~L~ 385 (594)
+..+..+++.+..++...+ ...+..++.|++++|+++.++...|. ..+++. +++++|+++.++...+. ++|+
T Consensus 130 l~~~~~~n~~l~~i~~~~~----~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~ 204 (242)
T d1xwdc1 130 VLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPV 204 (242)
T ss_dssp EEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCS
T ss_pred ccccccccccccccccccc----ccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCC
Confidence 6666777778877765432 23345788888888888888887774 444444 45777888888765443 6888
Q ss_pred EEeCCCCCCCCCCchhhhcccCcccEEECcC
Q psy6452 386 TFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416 (594)
Q Consensus 386 ~L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~ 416 (594)
+|++++|.+..+|... +..+++|+.+++.+
T Consensus 205 ~L~Ls~N~l~~l~~~~-~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 205 ILDISRTRIHSLPSYG-LENLKKLRARSTYN 234 (242)
T ss_dssp EEECTTSCCCCCCSSS-CTTCCEEESSSEES
T ss_pred EEECCCCcCCccCHHH-HcCCcccccCcCCC
Confidence 8888888888887754 45666666655543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=1e-17 Score=156.54 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=111.8
Q ss_pred ecCCCCCcccChhh-hccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCCC
Q psy6452 156 TFCDHELQSIEDDI-LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYH 234 (594)
Q Consensus 156 ~l~~n~l~~ip~~~-l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l~ 234 (594)
.+..+.++.+.... +.++++|++++|.++.+. ++ ..++
T Consensus 24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~---------~l--------------------------------~~l~ 62 (199)
T d2omxa2 24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID---------GV--------------------------------EYLN 62 (199)
T ss_dssp HTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT---------TG--------------------------------GGCT
T ss_pred HhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc---------cc--------------------------------ccCC
Confidence 34455555554433 777888888888777543 11 2356
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEec
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~L 314 (594)
+|++|++++|+|+.+++ +.++++|++|++++|.+..+ + .+..+++|+.|++++|.+..++.+..+++|+.|++
T Consensus 63 nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~---~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 135 (199)
T d2omxa2 63 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---T--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135 (199)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---G--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred CcCcCccccccccCccc--ccCCcccccccccccccccc---c--ccccccccccccccccccccccccchhhhhHHhhh
Confidence 78888888888877765 67788888888888875553 2 24677788888888877777777777788888888
Q ss_pred cCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC
Q psy6452 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK 377 (594)
Q Consensus 315 s~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 377 (594)
++|++..++. + ....+++.|++++|+++++++ +.++++|++|++++|++++++.
T Consensus 136 ~~n~l~~~~~-l------~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~~ 189 (199)
T d2omxa2 136 SSNTISDISA-L------SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189 (199)
T ss_dssp CSSCCCCCGG-G------TTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred hhhhhccccc-c------cccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCcc
Confidence 8887776652 1 222567777777777776653 4567777777777777766543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=3.5e-18 Score=159.74 Aligned_cols=161 Identities=20% Similarity=0.294 Sum_probs=129.2
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
++++++|++++|.|+.++. ++.+++|++|++++|+++++ ++ ++.+++|++|++++|.+..++.+.++++|++|
T Consensus 39 l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~---~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L 111 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDI---TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGL 111 (199)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCc---cc--ccCCcccccccccccccccccccccccccccc
Confidence 5788999999999998865 67899999999999997764 32 57899999999999999999888999999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|.+..++. + ...++|+.|++++|++..++. +..+++|+.|++++|+++++++....++|++|++++|
T Consensus 112 ~l~~~~~~~~~~-~------~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 112 TLFNNQITDIDP-L------KNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN 182 (199)
T ss_dssp ECCSSCCCCCGG-G------TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cccccccccccc-c------chhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCccccCCCCCCEEECCCC
Confidence 999998887653 1 223688999999998887763 4578899999999999888876566678888888888
Q ss_pred CCCCCCchhhhcccCcccEE
Q psy6452 393 IGMKIPEWFWYQEFLCLKEL 412 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L 412 (594)
.+..++. +..+++|+.|
T Consensus 183 ~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 183 KVSDISV---LAKLTNLESL 199 (199)
T ss_dssp CCCCCGG---GGGCTTCSEE
T ss_pred CCCCCcc---ccCCCCCCcC
Confidence 8777764 3566666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.6e-18 Score=167.16 Aligned_cols=219 Identities=19% Similarity=0.142 Sum_probs=135.4
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCC-CCCccc--cCCccE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI-LHKPRC--THTLQT 386 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--~~~L~~ 386 (594)
+.+++++..++.+|..+ |.++++|++++|+|+.++...|.++++|++|++++|.+.. ++...+ .+.++.
T Consensus 11 ~~i~c~~~~l~~iP~~l--------~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~ 82 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDL--------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 82 (242)
T ss_dssp SEEEEESCSCSSCCSCS--------CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred CEEEEeCCCCCCcCCCC--------CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence 56677777777777432 3567777777777777777777788888888888887765 333222 234444
Q ss_pred EeCCC-CCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCccccccCc-cccccC
Q psy6452 387 FSMNH-NIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV-SQLKYL 464 (594)
Q Consensus 387 L~L~~-N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l 464 (594)
+.+.. |.+..++... +..+++|+.++++ +|.+....+ ..+..+
T Consensus 83 l~~~~~n~l~~~~~~~-~~~l~~L~~l~l~----------------------------------~~~l~~~~~~~~~~~l 127 (242)
T d1xwdc1 83 IRIEKANNLLYINPEA-FQNLPNLQYLLIS----------------------------------NTGIKHLPDVHKIHSL 127 (242)
T ss_dssp EEEECCTTCCEECTTS-EECCTTCCEEEEE----------------------------------SCCCCSCCCCTTTCBS
T ss_pred cccccccccccccccc-ccccccccccccc----------------------------------hhhhcccccccccccc
Confidence 44322 2333333322 2444445555544 444433222 123334
Q ss_pred CCcceEeCCCCcCcccccccccccccCc-ccccCC-CCCcEEeCccccCccccccccCCCCCcEE-EccCCCCcccCc-c
Q psy6452 465 KNIKYLNCSNDIDHRKSQDFVNVLWELP-LSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKL-NISHNKVYKLPE-S 540 (594)
Q Consensus 465 ~~L~~L~Ls~n~~~~~~~~~~n~~~~ip-~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L-~Ls~N~l~~lp~-~ 540 (594)
..+..+...++ .+..++ ..+..+ ..++.|++++|+++.++.......+++.+ ++++|+|+.+|. .
T Consensus 128 ~~l~~~~~~n~-----------~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~ 196 (242)
T d1xwdc1 128 QKVLLDIQDNI-----------NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196 (242)
T ss_dssp SCEEEEEESCT-----------TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTT
T ss_pred ccccccccccc-----------ccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHH
Confidence 44555454443 222332 223333 36888999999999887765555665555 578888999976 6
Q ss_pred ccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEEccCCCCcccC
Q psy6452 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 541 ~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~l~ 584 (594)
|.++++|++|+|++|+|+.+|.. |..+++|+.+++. .+..+|
T Consensus 197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~--~l~~lp 239 (242)
T d1xwdc1 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLP 239 (242)
T ss_dssp TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE--SSSCSC
T ss_pred hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC--CCCcCC
Confidence 88899999999999999988775 7777777776664 355555
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=8e-18 Score=158.67 Aligned_cols=165 Identities=25% Similarity=0.257 Sum_probs=136.2
Q ss_pred CCcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEE
Q psy6452 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312 (594)
Q Consensus 233 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L 312 (594)
+.+|++|++++|.|+.+.. ++.+++|++|++++|+|+++ ++ ++.+++|++|++++|+|++++.+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l---~~--~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI---KP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCc---cc--cccCcccccccccccccccccccccccccccc
Confidence 5689999999999998875 68899999999999997774 32 46899999999999999999989999999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCCccccCCccEEeCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~L~~N 392 (594)
++++|.+..++. + ...+.++.+++++|.++..+. +..+++|+.+++++|+++++.+....++|++|++++|
T Consensus 118 ~l~~~~~~~~~~-l------~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N 188 (210)
T d1h6ta2 118 SLEHNGISDING-L------VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188 (210)
T ss_dssp ECTTSCCCCCGG-G------GGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cccccccccccc-c------ccccccccccccccccccccc--ccccccccccccccccccccccccCCCCCCEEECCCC
Confidence 999999887763 1 223688999999999987664 3478899999999999988876666778889999888
Q ss_pred CCCCCCchhhhcccCcccEEECcC
Q psy6452 393 IGMKIPEWFWYQEFLCLKELNMSS 416 (594)
Q Consensus 393 ~~~~ip~~~~~~~~~~L~~L~Ls~ 416 (594)
.+..++. +..+++|+.|++++
T Consensus 189 ~i~~l~~---l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 189 HISDLRA---LAGLKNLDVLELFS 209 (210)
T ss_dssp CCCBCGG---GTTCTTCSEEEEEE
T ss_pred CCCCChh---hcCCCCCCEEEccC
Confidence 8888764 46788888888764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=2.5e-18 Score=159.83 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=133.7
Q ss_pred EEecCCCCCcccChhhhccCcEEEccCccccccccccccCCCCCccccCCCCcccccccccccccccccccccccCccCC
Q psy6452 154 TRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQY 233 (594)
Q Consensus 154 ~l~l~~n~l~~ip~~~l~~L~~L~Ls~N~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~l 233 (594)
.++.+++++++||.++++++++|+|++|+|++..+ ...|.++
T Consensus 12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~--------------------------------------~~~f~~l 53 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS--------------------------------------DGLFGRL 53 (192)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC--------------------------------------SCSGGGC
T ss_pred EEEEeCCCcCccCCCCCCCCCEEEeCCCCCccccc--------------------------------------ccccCCC
Confidence 56788999999999989999999999999986441 2234567
Q ss_pred CcccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccE
Q psy6452 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKE 311 (594)
Q Consensus 234 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~ 311 (594)
++|+.|+|++|++..++...|..+++|++|+|++|+|+ .+++.+|.++++|++|+|++|+|+.++ .|..+++|++
T Consensus 54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~---~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 130 (192)
T d1w8aa_ 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ceEeeeeccccccccccccccccccccceeeecccccc---ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence 89999999999999999999999999999999999955 478889999999999999999999887 4889999999
Q ss_pred EeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCC
Q psy6452 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373 (594)
Q Consensus 312 L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 373 (594)
|+|++|.+.......... ..++.+.+..+.++...+ ..+..++.++|+.|.++
T Consensus 131 l~L~~N~~~~~~~~~~~~------~~l~~~~l~~~~~~c~~p---~~l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 131 LNLASNPFNCNCHLAWFA------EWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK 183 (192)
T ss_dssp EECTTCCBCCSGGGHHHH------HHHHHHCCSGGGCBBCSS---TTTTTSBGGGSCTTTCC
T ss_pred ccccccccccccchHHHh------hhhhhhcccCCCeEeCCC---hhhcCCEeeecCHhhCc
Confidence 999999998644221110 234455566666652222 23445666677777765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=1.5e-17 Score=154.42 Aligned_cols=132 Identities=16% Similarity=0.236 Sum_probs=113.5
Q ss_pred cccEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCC--CcCCCcCccEE
Q psy6452 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKEL 312 (594)
Q Consensus 235 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~l~~L~~L 312 (594)
..+.+++++++++.||.+++ +++++|+|++|+|++ .++...|..+++|++|+|++|.+..++ .|..+++|++|
T Consensus 9 ~~~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L 83 (192)
T d1w8aa_ 9 EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcc--cccccccCCCceEeeeecccccccccccccccccccccee
Confidence 35689999999999998654 689999999999765 366778899999999999999999776 58889999999
Q ss_pred eccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCC
Q psy6452 313 DISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376 (594)
Q Consensus 313 ~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 376 (594)
+|++|+|+.+|+..+..+ ++|++|+|++|+|+.++..+|.++++|++|+|++|.+....
T Consensus 84 ~Ls~N~l~~l~~~~F~~l-----~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 84 QLGENKIKEISNKMFLGL-----HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp ECCSCCCCEECSSSSTTC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred eeccccccccCHHHHhCC-----CcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence 999999999987765432 68999999999999999999999999999999999887543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.1e-15 Score=128.97 Aligned_cols=104 Identities=26% Similarity=0.245 Sum_probs=70.9
Q ss_pred cccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccCccccCCCCCCEEECcCCCCCccCc--ccc
Q psy6452 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD--GFV 565 (594)
Q Consensus 488 ~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ip~--~l~ 565 (594)
+..++ .+.++++|++|++++|.|+.+|+.+..+++|+.|++++|+|+.+| .+..+++|++|++++|+|+.+|. .+.
T Consensus 10 l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~ 87 (124)
T d1dcea3 10 LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLV 87 (124)
T ss_dssp CSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred CCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhc
Confidence 33444 356667777777777777777777777777777777777777775 37777777777777777776653 367
Q ss_pred cCCCCcEEEccCCCCcccC---HhHHhhhhC
Q psy6452 566 MLSNLTTFYAQRKYWMFLT---ISLLCYLMG 593 (594)
Q Consensus 566 ~l~~L~~L~L~~N~l~~l~---~~~~~~l~~ 593 (594)
.+++|++|++++|+++.++ ..+...+.+
T Consensus 88 ~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~ 118 (124)
T d1dcea3 88 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118 (124)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CCCCCCEEECCCCcCCcCccHHHHHHHHCcC
Confidence 7777777777777776543 344444433
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.1e-16 Score=139.08 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=67.6
Q ss_pred hhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccCCccccCchhhhhccccc
Q psy6452 254 SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVH 333 (594)
Q Consensus 254 f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~~~ 333 (594)
|.++.+|++|+|++|+|+.+ + ..+..+++|++|+|++|.|+.++.|..+++|++|++++|+++.+++.++..
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i---~-~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~---- 85 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVI---E-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQA---- 85 (162)
T ss_dssp EECTTSCEEEECTTSCCCSC---C-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHH----
T ss_pred ccCcCcCcEEECCCCCCCcc---C-ccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccc----
Confidence 34555666666666665543 2 334456666666666666666666666666777777777666665543321
Q ss_pred cCCCcceEEcCCCCCCCCCh-hhhccCCCCcEEECCCCCCCCC
Q psy6452 334 IPYKHSQSDISHNNFESMPL-CLQVHFCKLVKLDISHNQIKIL 375 (594)
Q Consensus 334 ~~~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l 375 (594)
.++|+.|++++|+++.++. ..+..+++|++|++++|.++..
T Consensus 86 -l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~ 127 (162)
T d1a9na_ 86 -LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127 (162)
T ss_dssp -CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred -ccccccceeccccccccccccccccccccchhhcCCCccccc
Confidence 1456666666666665543 3445666777777777766543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=8.9e-15 Score=125.03 Aligned_cols=119 Identities=21% Similarity=0.238 Sum_probs=85.2
Q ss_pred cEEEccCCCCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCCcCCCcCccEEeccC
Q psy6452 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316 (594)
Q Consensus 237 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~l~~L~~L~Ls~ 316 (594)
+.|+|++|+|+.++. +..+++|++|++++|+|++ +|+. ++.+++|++|++++|.|+++|++..+++|++|++++
T Consensus 1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~---lp~~-~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA---LPPA-LAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCC---CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCc---chhh-hhhhhcccccccccccccccCccccccccCeEECCC
Confidence 578999999998875 6888999999999999665 5544 578899999999999999888888889999999999
Q ss_pred CccccCchhhhhccccccCCCcceEEcCCCCCCC---CChhhhccCCCCcEE
Q psy6452 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES---MPLCLQVHFCKLVKL 365 (594)
Q Consensus 317 N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L 365 (594)
|+++.++.... ....++|+.|++++|.++. +.......+++|+.|
T Consensus 75 N~i~~~~~~~~----l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 75 NRLQQSAAIQP----LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SCCCSSSTTGG----GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CccCCCCCchh----hcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 99887763210 1112456666666665543 233344445555544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7e-15 Score=132.00 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=72.9
Q ss_pred ccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc-
Q psy6452 439 VFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED- 517 (594)
Q Consensus 439 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~- 517 (594)
...+++.|++++|+++.. +..+..+++|+.|++++| .+..++ .+..+++|++|++++|+|+.++..
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N-----------~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~ 82 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN-----------EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL 82 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSS-----------CCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCC-----------CCCccC-CcccCcchhhhhcccccccCCCccc
Confidence 344666677777766665 234455666666666664 233332 345566666666666666666554
Q ss_pred ccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCccCc----ccccCCCCcEEE
Q psy6452 518 IGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTMLPD----GFVMLSNLTTFY 574 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~ip~----~l~~l~~L~~L~ 574 (594)
+..+++|++|+|++|+|+.++. .+..+++|++|++++|.++.+|. .+..+++|++||
T Consensus 83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 4456666666666666665543 45566666666666666665543 245666666654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.49 E-value=4.3e-15 Score=150.63 Aligned_cols=90 Identities=13% Similarity=0.229 Sum_probs=54.4
Q ss_pred ccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCcc-----cCccccC--CCCCCEEECcCCCCCc---
Q psy6452 495 ILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVYK-----LPESFAN--LKSLKILDVSYNKLTM--- 559 (594)
Q Consensus 495 ~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~--l~~L~~L~Ls~N~l~~--- 559 (594)
+..+++|+.|+|++|.++ .+...+..+++|++|+|++|.|+. +-..+.. .+.|++|++++|+|+.
T Consensus 211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~ 290 (344)
T d2ca6a1 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290 (344)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence 344566777777777665 234446667777777777777762 2223322 3567777777777762
Q ss_pred --cCcccc-cCCCCcEEEccCCCCcccC
Q psy6452 560 --LPDGFV-MLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 560 --ip~~l~-~l~~L~~L~L~~N~l~~l~ 584 (594)
+...+. ++++|++|+|++|.+..-+
T Consensus 291 ~~l~~~l~~~~~~L~~L~l~~N~~~~~~ 318 (344)
T d2ca6a1 291 RTLKTVIDEKMPDLLFLELNGNRFSEED 318 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence 333332 4667777777777776544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.43 E-value=2.8e-14 Score=144.47 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=36.7
Q ss_pred CCCCCcEEeCccccCcc-----ccccccC--CCCCcEEEccCCCCc-----ccCcccc-CCCCCCEEECcCCCCCcc
Q psy6452 497 YLSSIQELHLSNVQLNC-----IPEDIGN--LICLEKLNISHNKVY-----KLPESFA-NLKSLKILDVSYNKLTML 560 (594)
Q Consensus 497 ~l~~L~~L~Ls~N~l~~-----ip~~~~~--l~~L~~L~Ls~N~l~-----~lp~~~~-~l~~L~~L~Ls~N~l~~i 560 (594)
.+++|++|+|++|.|+. +-..+.. ...|++|++++|+|+ .+...+. .+++|++|+|++|++..-
T Consensus 241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 34556666666666652 2222322 356777777777776 2333332 456777777777777643
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.2e-12 Score=116.20 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=81.8
Q ss_pred CcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccc-cCcccccc-ccCCCCCcEEEccCCCCcccCc-ccc
Q psy6452 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV-QLNCIPED-IGNLICLEKLNISHNKVYKLPE-SFA 542 (594)
Q Consensus 466 ~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~ 542 (594)
..+.+++++ +....+|..+..+++|++|++++| .|+.++.. |.++++|+.|+|++|+|+.|+. +|.
T Consensus 9 ~~~~l~c~~-----------~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 77 (156)
T d2ifga3 9 GSSGLRCTR-----------DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (156)
T ss_dssp SSSCEECCS-----------SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred CCCeEEecC-----------CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc
Confidence 344566666 345556777777888888888766 58888654 8888899999999999988844 788
Q ss_pred CCCCCCEEECcCCCCCccCcccccCCCCcEEEccCCCCc
Q psy6452 543 NLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWM 581 (594)
Q Consensus 543 ~l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~ 581 (594)
.+++|++|+|++|+|+.+|.......+|+.|+|++|+|.
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 78 FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence 888999999999999988877445557889999999885
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1e-12 Score=129.07 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=18.3
Q ss_pred cccCCCCCcEEeCccc-cCc-cccccccCCCCCcEEEccCC
Q psy6452 494 SILYLSSIQELHLSNV-QLN-CIPEDIGNLICLEKLNISHN 532 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~Ls~N 532 (594)
.+..+++|++|+|++| .|+ .....+.++++|+.|+++++
T Consensus 195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 3444455555555553 343 11223444555555555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2e-12 Score=126.98 Aligned_cols=248 Identities=16% Similarity=0.056 Sum_probs=151.1
Q ss_pred cEEeccCCccccCchhhhhccccccCCCcceEEcCCCCCCCCChhhhccCCCCcEEECCCCCCCCCCC---ccccCCccE
Q psy6452 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQT 386 (594)
Q Consensus 310 ~~L~Ls~N~l~~lp~~~~~~~~~~~~~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~~~L~~ 386 (594)
++||++++.+.. ..+.... ......+.++...+.......+ ...+|++||++++.++.... ....++|++
T Consensus 3 ~~lDLs~~~l~~--~~l~~l~----~~~~~~lrl~~~~~~~~~~~~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~ 75 (284)
T d2astb2 3 QTLDLTGKNLHP--DVTGRLL----SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75 (284)
T ss_dssp SEEECTTCBCCH--HHHHHHH----HTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred CEEECCCCCCCc--hHHHHHH----hccceEeeccccccccchhhhc-cCCCCCEEECCCCccCHHHHHHHHHhCCCccc
Confidence 588999887752 2222111 1245566777666554333333 55689999999998865321 233468999
Q ss_pred EeCCCCCCCCCCchhhhcccCcccEEECcCCCCccCCccHHHhhhcccccccccCCCcEEEcCCcc-ccccCc-cccc-c
Q psy6452 387 FSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-AVMSNV-SQLK-Y 463 (594)
Q Consensus 387 L~L~~N~~~~ip~~~~~~~~~~L~~L~Ls~n~~~~~~lp~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~-~ 463 (594)
|+++++.+...... .+..+++|+.|+++++..+...--..+ ...+++|++|+++++. ++.... ..+. .
T Consensus 76 L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l--------~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~ 146 (284)
T d2astb2 76 LSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTL--------LSSCSRLDELNLSWCFDFTEKHVQVAVAHV 146 (284)
T ss_dssp EECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHH--------HHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred ccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchh--------hHHHHhccccccccccccccccchhhhccc
Confidence 99999865432111 246788999999998753332100000 1346789999998863 443222 2233 3
Q ss_pred CCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccc-cCc-cccccccCCCCCcEEEccCC-CCcc-cCc
Q psy6452 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV-QLN-CIPEDIGNLICLEKLNISHN-KVYK-LPE 539 (594)
Q Consensus 464 l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~Ls~N-~l~~-lp~ 539 (594)
.++|+.|+++++...... ..+...+.++++|++|++++| .++ .....+..+++|++|+|+++ .++. -..
T Consensus 147 ~~~L~~L~l~~~~~~i~~-------~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~ 219 (284)
T d2astb2 147 SETITQLNLSGYRKNLQK-------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219 (284)
T ss_dssp CTTCCEEECCSCGGGSCH-------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred ccccchhhhccccccccc-------ccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH
Confidence 478999999864211111 112223345788999999987 466 44556788899999999984 5662 234
Q ss_pred cccCCCCCCEEECcCCCCC--ccCcccccCCCCcEEEccCCCCcccC
Q psy6452 540 SFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFYAQRKYWMFLT 584 (594)
Q Consensus 540 ~~~~l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~l~ 584 (594)
.+..+++|+.|+++++ ++ .++.-...+++| .+..++++.+.
T Consensus 220 ~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~ 262 (284)
T d2astb2 220 ELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIA 262 (284)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTT
T ss_pred HHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCC
Confidence 5778899999999887 44 222222345554 45677777654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.27 E-value=8.4e-14 Score=129.20 Aligned_cols=130 Identities=20% Similarity=0.169 Sum_probs=100.1
Q ss_pred cccCCCcEEEcCCccccccCccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCcccccc
Q psy6452 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED 517 (594)
Q Consensus 438 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 517 (594)
..+.+|++|++++|.++.. ..+..+++|+.|++++| .+..+|.....+++|+.|++++|+|+.++ .
T Consensus 45 ~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N-----------~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~ 110 (198)
T d1m9la_ 45 STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN-----------LIKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp HHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEE-----------EECSCSSHHHHHHHCCEEECSEEECCCHH-H
T ss_pred hcccccceeECcccCCCCc--ccccCCccccChhhccc-----------ccccccccccccccccccccccccccccc-c
Confidence 3456788888888888765 35788889999999884 56667655555678999999999999885 4
Q ss_pred ccCCCCCcEEEccCCCCcccCc--cccCCCCCCEEECcCCCCCccCcc-----------cccCCCCcEEEccCCCCccc
Q psy6452 518 IGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTMLPDG-----------FVMLSNLTTFYAQRKYWMFL 583 (594)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~ip~~-----------l~~l~~L~~L~L~~N~l~~l 583 (594)
+..+++|+.|+|++|+|+.++. .+..+++|+.|+|++|+++..+.. +..+++|+.|| +.+++.-
T Consensus 111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~ 187 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTT
T ss_pred ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHH
Confidence 7788899999999999998763 688899999999999988743221 45788898875 5566543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.26 E-value=3.1e-14 Score=132.20 Aligned_cols=115 Identities=23% Similarity=0.183 Sum_probs=100.1
Q ss_pred ccccccCCCcceEeCCCCcCcccccccccccccCcccccCCCCCcEEeCccccCccccccccCCCCCcEEEccCCCCccc
Q psy6452 458 VSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537 (594)
Q Consensus 458 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~n~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~l 537 (594)
+..+..+++|++|++++| .+..++ .+..+++|+.|+|++|.|+.+|..+..+++|++|++++|+|+.+
T Consensus 41 ~~sl~~L~~L~~L~Ls~n-----------~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l 108 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTN-----------NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHHHTTTCCEEECSEE-----------EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH
T ss_pred hhHHhcccccceeECccc-----------CCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccc
Confidence 456888999999999994 566675 58889999999999999999987666678999999999999998
Q ss_pred CccccCCCCCCEEECcCCCCCccCc--ccccCCCCcEEEccCCCCcccCH
Q psy6452 538 PESFANLKSLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQRKYWMFLTI 585 (594)
Q Consensus 538 p~~~~~l~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~l~~ 585 (594)
+ .+..+++|++|++++|+|+.++. .+..+++|+.|++++|++...+.
T Consensus 109 ~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 157 (198)
T d1m9la_ 109 S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred c-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence 5 47888999999999999998864 58999999999999999876543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.3e-11 Score=105.41 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCCcccEEEccCC-CCcccchHhhhcCCCCCEEECCCCCCCCccccchhhhhcCCCCCEEEcCCCCCCCCCC-cCCCcCc
Q psy6452 232 QYHDIFTVNLSHQ-DINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVL 309 (594)
Q Consensus 232 ~l~~L~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l~~i~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~l~~L 309 (594)
++++|++|++++| .|+.++...|.++++|+.|+|++|+|+ .+++.+|..+++|++|+|++|+|+.+|. .....+|
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~---~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l 105 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL 105 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC---EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeeccccC---CcccccccccccccceeccCCCCcccChhhhccccc
Confidence 3566777777655 477777777777777777777777743 3556667777777777777777777662 2333457
Q ss_pred cEEeccCCccc
Q psy6452 310 KELDISHNNFE 320 (594)
Q Consensus 310 ~~L~Ls~N~l~ 320 (594)
++|+|++|.+.
T Consensus 106 ~~L~L~~Np~~ 116 (156)
T d2ifga3 106 QELVLSGNPLH 116 (156)
T ss_dssp CEEECCSSCCC
T ss_pred cccccCCCccc
Confidence 77777777765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.4e-09 Score=92.79 Aligned_cols=85 Identities=20% Similarity=0.068 Sum_probs=62.4
Q ss_pred cCcccccCCCCCcEEeCccccCcccc---ccccCCCCCcEEEccCCCCcccCc-cccCCCCCCEEECcCCCCCccCc---
Q psy6452 490 ELPLSILYLSSIQELHLSNVQLNCIP---EDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPD--- 562 (594)
Q Consensus 490 ~ip~~~~~l~~L~~L~Ls~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~ip~--- 562 (594)
.++.....+++|++|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+++ .+....+|+.|++++|+++....
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~ 135 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence 33334456788999999999988664 346778899999999999998866 44455678999999998874321
Q ss_pred -----ccccCCCCcEEE
Q psy6452 563 -----GFVMLSNLTTFY 574 (594)
Q Consensus 563 -----~l~~l~~L~~L~ 574 (594)
.+..+|+|+.||
T Consensus 136 ~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 136 TYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHTTSTTCCEET
T ss_pred hHHHHHHHHCCCCCEEC
Confidence 156788888775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=6.2e-09 Score=92.36 Aligned_cols=86 Identities=20% Similarity=0.118 Sum_probs=60.4
Q ss_pred CCCcEEeCccccCccccccccCCCCCcEEEccCCCCcccC---ccccCCCCCCEEECcCCCCCccCcc-cccCCCCcEEE
Q psy6452 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP---ESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574 (594)
Q Consensus 499 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~ 574 (594)
..+..++..++.+..++..+..+++|++|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+++. +....+|+.|+
T Consensus 42 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~ 121 (162)
T d1koha1 42 NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121 (162)
T ss_dssp TCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCC
T ss_pred cchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceee
Confidence 3444455555555555545567788888888888888664 3456788888888888888887653 34455788888
Q ss_pred ccCCCCcccC
Q psy6452 575 AQRKYWMFLT 584 (594)
Q Consensus 575 L~~N~l~~l~ 584 (594)
+++|++....
T Consensus 122 L~~Npl~~~~ 131 (162)
T d1koha1 122 LDGNSLSDTF 131 (162)
T ss_dssp CTTSTTSSSS
T ss_pred cCCCCcCcCc
Confidence 8888887654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.04 E-value=1.2e-06 Score=77.45 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=59.4
Q ss_pred cccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCCc----
Q psy6452 494 SILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLTM---- 559 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~---- 559 (594)
.+...+.|++|+|++|.++ .+...+...+.|++|+|++|.|+ .+-.++...++|++|++++|.+..
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence 4445567888888888776 33344566778888888888887 233456677788888888876553
Q ss_pred ----cCcccccCCCCcEEEccCCCC
Q psy6452 560 ----LPDGFVMLSNLTTFYAQRKYW 580 (594)
Q Consensus 560 ----ip~~l~~l~~L~~L~L~~N~l 580 (594)
+.+.+...+.|+.|+++.+..
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCccEeeCcCCCc
Confidence 333455678888888876643
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.01 E-value=2.7e-06 Score=75.18 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=72.6
Q ss_pred CCCCcEEeCccc-cCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCCc-----cC
Q psy6452 498 LSSIQELHLSNV-QLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLTM-----LP 561 (594)
Q Consensus 498 l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----ip 561 (594)
.++|++|+|+++ .++ .+-..+...+.|++|+|++|.++ .+...+...+.|+.|+|++|.|+. +-
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 478999999974 576 34445778899999999999998 333456677899999999999992 45
Q ss_pred cccccCCCCcEEEccCCCCcccCHhH
Q psy6452 562 DGFVMLSNLTTFYAQRKYWMFLTISL 587 (594)
Q Consensus 562 ~~l~~l~~L~~L~L~~N~l~~l~~~~ 587 (594)
..+...+.|++|++++|.+..+....
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHH
Confidence 56788899999999999988887544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.64 E-value=8.4e-06 Score=71.73 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=63.3
Q ss_pred cccCCCCCcEEeCccccCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEEC--cCCCCC---
Q psy6452 494 SILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDV--SYNKLT--- 558 (594)
Q Consensus 494 ~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L--s~N~l~--- 558 (594)
.+...++|++|+|++|.++ .+-..+...++++.+++++|.++ .+...+...++|+.++| ++|.+.
T Consensus 41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~ 120 (166)
T d1io0a_ 41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 120 (166)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence 4455678888888888887 34445667788889999888887 33446677788887655 466776
Q ss_pred --ccCcccccCCCCcEEEccCCCCc
Q psy6452 559 --MLPDGFVMLSNLTTFYAQRKYWM 581 (594)
Q Consensus 559 --~ip~~l~~l~~L~~L~L~~N~l~ 581 (594)
.|.+.+...+.|+.|+++.+...
T Consensus 121 ~~~La~~L~~n~~L~~L~l~~~~~~ 145 (166)
T d1io0a_ 121 EMEIANMLEKNTTLLKFGYHFTQQG 145 (166)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeCcCCCCc
Confidence 25555678888999988877543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.07 E-value=0.00014 Score=63.54 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCCCcEEeCcc-ccCc-----cccccccCCCCCcEEEccCCCCc-----ccCccccCCCCCCEEECcCCCCC-----cc
Q psy6452 497 YLSSIQELHLSN-VQLN-----CIPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSLKILDVSYNKLT-----ML 560 (594)
Q Consensus 497 ~l~~L~~L~Ls~-N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~-----~i 560 (594)
+.++|++|+|++ +.|+ .+-..+...+.|++|+|++|.++ .+...+...++++.+++++|.++ .+
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 457899999998 5677 34455778899999999999998 34446677899999999999998 34
Q ss_pred CcccccCCCCcEEEcc--CCCCcc
Q psy6452 561 PDGFVMLSNLTTFYAQ--RKYWMF 582 (594)
Q Consensus 561 p~~l~~l~~L~~L~L~--~N~l~~ 582 (594)
.+.+...++|+.++|+ +|++..
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~ 118 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGN 118 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCccccEEeeccCCCcCcH
Confidence 5667888999987665 566654
|