Psyllid ID: psy6471

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
MIRFDRGNCNFYGLIVPKSKREGRQGVSSSQFCSVRDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
ccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEccccccEEEEEEEcccccccccccccccccccccHHHccccccccccEEEEEEEEcHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcEEEcccccccccHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mirfdrgncnfyglivpkskregrqgvsssqfcsvrdtasrltssgdpnpsfsltnvkwndvdtheideKSIITYISSlydvfpeppavhplydsesqQRVNEYCDLASSLHLWMREKTAymqdrnfpSTLIEMKKLAADSarfrteevpprqrdkQRLQHIFQDLTKYFedvgevdidpelhIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRldrlhpldakhnvdVLEHDLRQAEENINTLFSdvqtlregrypqasDLHKRVQKLHQRWVALRSLLHSrlvsplasmsfpvveertvtrqTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIqeadygsdlqGVQAEIAIHQREQNIIAQIQeadygsdlqGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADklleegdpsdpqLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHsrinapvprdldSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
mirfdrgncnfyglivpkskregrqgvsssqfcsVRDTAsrltssgdpnpsfsltnvkwndvdTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSArfrteevpprqrdkqrLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQrlaekvtremkrvdgrleelesRINEearrldrlhpldaKHNVDVLEHDLRQAEENINtlfsdvqtlREGRYPQASDLHKRVQKLHQRWVALRSLLHSRlvsplasmsfpvveertvtrqtrtvmetrlvdtnTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEdadklleegdpsdpqlrrLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSrinapvprdlDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
MIRFDRGNCNFYGLIVPKSKREGRQGVSSSQFCSVRDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPvveertvtrqtrtvmetrLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNrlfdeferraraeedMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSqwawllqlalCLETHLKHAAYYHQFWREMKDAETWINK
*****RGNCNFYGLIV*************************************LTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDS***QRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLI**************************LQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQ****************************************************VDVLEHDLR*AEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAI*****************************************************************************************EHLVLQHKDFE*TLKNL******REIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETW***
*IRFD*GNCNFYGLIVP*************QFCSVRDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPA*******ESQQRVNEYCDLASSLHLWMREKTAYMQ*RNF*****EMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTK**********DPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRI**************AKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSF*************TVMETRLVDTNTHFRALQEAIEWVK*************DLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAA**********NAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLH*RINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEK*EI********************KCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
MIRFDRGNCNFYGLIVPKSK***************RDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAAD****************QRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
MIRFDRGNCNFYGLIVPKS***************************DPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
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iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIRFDRGNCNFYGLIVPKSKREGRQGVSSSQFCSVRDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDRLHPLDAKHNxxxxxxxxxxxxxxxxxxxxxxxxxxxxRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHxxxxxxxxxxxxxxxxxxxxxDYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNAxxxxxxxxxxxxxxxxxxxxxLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query635 2.2.26 [Sep-21-2011]
Q9JI55 4473 Plectin (Fragment) OS=Cri no N/A 0.496 0.070 0.340 4e-42
Q03001 7570 Dystonin OS=Homo sapiens no N/A 0.839 0.070 0.249 2e-41
Q15149 4684 Plectin OS=Homo sapiens G yes N/A 0.500 0.067 0.331 2e-41
P30427 4687 Plectin OS=Rattus norvegi yes N/A 0.496 0.067 0.337 5e-41
Q9QXS1 4691 Plectin OS=Mus musculus G yes N/A 0.496 0.067 0.334 7e-41
Q91ZU6 7389 Dystonin OS=Mus musculus no N/A 0.844 0.072 0.256 2e-38
Q9QXZ0 7354 Microtubule-actin cross-l no N/A 0.530 0.045 0.249 5e-27
D3ZHV2 5430 Microtubule-actin cross-l no N/A 0.530 0.062 0.249 7e-26
Q9UPN3 7388 Microtubule-actin cross-l no N/A 0.530 0.045 0.246 1e-25
Q01082 2364 Spectrin beta chain, non- no N/A 0.771 0.207 0.230 2e-18
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1 Back     alignment and function desciption
 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 182/329 (55%), Gaps = 14/329 (4%)

Query: 61  DVDTHEIDEKSIITYISSLYDVFPE-PPAVHPLYDSESQQRVNEYCDLASSLHLWMREKT 119
           DVD  + DEKSIITY+SSLYD  P  P A + +  +E Q R  EY +L   L  W+R  T
Sbjct: 169 DVDVPQPDEKSIITYVSSLYDAMPRVPGAQNGVRANELQLRWQEYRELVLLLLQWIRHHT 228

Query: 120 AYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDID 179
           A  ++R FPS+  E++ L     +F+  E+P ++ DK R + I+Q L    +  G++ I 
Sbjct: 229 AAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKSRSKGIYQSLEGAVQ-AGQLQIP 287

Query: 180 PELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESR 239
           P  H   +E+ W +L  A  E++  L+ E +RL+ LQR+  K+  E    + +L + +S 
Sbjct: 288 PGFHPLDVEKEWGKLHVAILEREKQLRGEFERLECLQRIVSKLQMEAGLCEEQLNQADSL 347

Query: 240 INEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQ 299
           +  + R L              +E DL +A+  I  LF+DVQTL++GR+PQ   +++RV 
Sbjct: 348 LQSDIRLL---ASGKVAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVY 404

Query: 300 KLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAI 359
           +LH+R VA+R+  + RL + +A+   PV +    + Q R  +E      ++  R LQ+ +
Sbjct: 405 RLHERLVAIRTEYNLRLKAGVAA---PVTQVTVQSTQRRPELE------DSTLRYLQDLL 455

Query: 360 EWVKNKLAQIQEADYGSDLQGVQAEIAIH 388
            WV+    +I  A++G DL  V+A++  H
Sbjct: 456 AWVEENQRRIDSAEWGVDLPSVEAQLGSH 484
Interlinks intermediate filaments with microtubules and microfilaments and anchors intermediate filaments to desmosomes or hemidesmosomes. May be involved not only in the cross-linking and stabilization of cytoskeletal intermediate filaments network, but also in the regulation of their dynamics.
Cricetulus griseus (taxid: 10029)
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4 Back     alignment and function description
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3 Back     alignment and function description
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2 Back     alignment and function description
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2 Back     alignment and function description
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1 Back     alignment and function description
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1 PE=1 SV=2 Back     alignment and function description
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus GN=Macf1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4 Back     alignment and function description
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
328713962 5583 PREDICTED: microtubule-actin cross-linki 0.784 0.089 0.546 1e-171
328713960 5312 PREDICTED: microtubule-actin cross-linki 0.784 0.093 0.546 1e-171
328713956 5324 PREDICTED: microtubule-actin cross-linki 0.784 0.093 0.546 1e-171
328713964 5304 PREDICTED: microtubule-actin cross-linki 0.784 0.093 0.546 1e-171
328713958 5303 PREDICTED: microtubule-actin cross-linki 0.784 0.093 0.546 1e-171
328713966 5295 PREDICTED: microtubule-actin cross-linki 0.784 0.094 0.546 1e-170
307169992 8605 Bullous pemphigoid antigen 1, isoforms 6 0.798 0.058 0.554 1e-167
345487070 8247 PREDICTED: microtubule-actin cross-linki 0.792 0.060 0.552 1e-165
350403208 3562 PREDICTED: microtubule-actin cross-linki 0.792 0.141 0.554 1e-164
340728301 3568 PREDICTED: microtubule-actin cross-linki 0.792 0.140 0.554 1e-164
>gi|328713962|ref|XP_001943041.2| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 321/587 (54%), Positives = 400/587 (68%), Gaps = 89/587 (15%)

Query: 61  DVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTA 120
           DVDTHEIDEKSIITYISSL++VFPEPP +HPLYDSESQQR  EY ++ASSL+ WMREK +
Sbjct: 236 DVDTHEIDEKSIITYISSLHEVFPEPPRLHPLYDSESQQRSGEYREIASSLNRWMREKLS 295

Query: 121 YMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDP 180
            M DRNFPSTLIEMKKLA+DS +FR EE+PPR RDKQ L H++++L KYFE VGE DI+P
Sbjct: 296 VMSDRNFPSTLIEMKKLASDSTKFRNEELPPRHRDKQHLVHLYKELQKYFEAVGENDIEP 355

Query: 181 ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRI 240
           EL  D I+R W+RL+ ++Q++DS +Q+EIKRL+RLQRLAEKV RE KR D +L+ELE+RI
Sbjct: 356 ELQADAIDRTWNRLMMSYQDRDSAIQEEIKRLERLQRLAEKVHRETKRTDLKLDELETRI 415

Query: 241 NEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQK 300
            EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREGRY QA +L KRV+K
Sbjct: 416 VEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREGRYVQAPELQKRVEK 475

Query: 301 LHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIE 360
           LHQRWV LRSLLHS++++PLA++SFP+VEERTVT+QTRT++ETRLVDTNTHFR+LQE I+
Sbjct: 476 LHQRWVNLRSLLHSKVLTPLATLSFPIVEERTVTKQTRTILETRLVDTNTHFRSLQECID 535

Query: 361 WVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQRE 420
           W  NKL Q+QEA+YGSDL  VQ  +  HQ                             RE
Sbjct: 536 WCNNKLKQLQEAEYGSDLPSVQGLLDQHQ-----------------------------RE 566

Query: 421 QNIIEQFHTRVEHCIAAKF------LAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRR 474
             II+QFHT+VEHCI AK       L++ +   N ++K   E                  
Sbjct: 567 HKIIDQFHTKVEHCINAKSNFHGDELSLYSQHLNTLQKVYAE------------------ 608

Query: 475 LRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSR------I 528
                     L     +R    E +++    F + A+N    L+E E    +R      +
Sbjct: 609 ----------LVTFSNKRLSDLETLQD----FLQSATNQLIWLNEKEEIELNRDWSDKDL 654

Query: 529 NAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCI 588
           N P  R              +ES +    S+LEKREIQ S+VQDRGEALILQ H A+KCI
Sbjct: 655 NIPSIRQY------------YESLM----SELEKREIQLSSVQDRGEALILQGHLASKCI 698

Query: 589 EAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK 635
           EAY++A+Q+QW WLLQL LCLETHLKHA YYHQF+ ++K+AE W+NK
Sbjct: 699 EAYISALQTQWTWLLQLTLCLETHLKHATYYHQFYTDVKEAEHWLNK 745

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328713960|ref|XP_003245224.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328713956|ref|XP_003245222.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328713964|ref|XP_003245225.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 5 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328713958|ref|XP_003245223.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328713966|ref|XP_003245226.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 6 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307169992|gb|EFN62471.1| Bullous pemphigoid antigen 1, isoforms 6/9/10 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345487070|ref|XP_001602426.2| PREDICTED: microtubule-actin cross-linking factor 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350403208|ref|XP_003486732.1| PREDICTED: microtubule-actin cross-linking factor 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340728301|ref|XP_003402464.1| PREDICTED: microtubule-actin cross-linking factor 1-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
FB|FBgn0013733 8805 shot "short stop" [Drosophila 0.582 0.042 0.502 5.6e-123
ZFIN|ZDB-GENE-030131-8984 4762 pleca "plectin a" [Danio rerio 0.530 0.070 0.327 3.3e-54
UNIPROTKB|J9NZV2 1404 PLEC "Uncharacterized protein" 0.514 0.232 0.328 2.3e-53
ZFIN|ZDB-GENE-100917-2 4530 plecb "plectin b" [Danio rerio 0.522 0.073 0.340 3.3e-53
UNIPROTKB|Q15149 4684 PLEC "Plectin" [Homo sapiens ( 0.519 0.070 0.328 2.9e-51
UNIPROTKB|Q6S3A1 4451 Plec "Plectin" [Rattus norvegi 0.516 0.073 0.334 1.1e-50
UNIPROTKB|Q6S3A3 4523 Plec "Plectin 3" [Rattus norve 0.516 0.072 0.334 1.1e-50
UNIPROTKB|Q6S395 4545 Plec "Plectin 11" [Rattus norv 0.516 0.072 0.334 1.1e-50
UNIPROTKB|Q6S398 4545 Plec "Plectin" [Rattus norvegi 0.516 0.072 0.334 1.1e-50
UNIPROTKB|Q6S396 4552 Plec "Plectin 10" [Rattus norv 0.516 0.072 0.334 1.1e-50
FB|FBgn0013733 shot "short stop" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 954 (340.9 bits), Expect = 5.6e-123, Sum P(2) = 5.6e-123
 Identities = 188/374 (50%), Positives = 252/374 (67%)

Query:    61 DVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTA 120
             DVDT+E DEKS+ITYISSLYDVFPEPP++HPL+D ESQ+RV+EY DLA     W REKTA
Sbjct:   304 DVDTNEPDEKSLITYISSLYDVFPEPPSIHPLFDMESQRRVHEYRDLAQQFIYWCREKTA 363

Query:   121 YMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDP 180
             Y+Q+R+FP TLIEMK+L +D  RFR++EV  R+R+K +L  I+++L +YFE VGEVD++ 
Sbjct:   364 YLQERSFPPTLIEMKRLLSDLQRFRSDEVSARKREKSKLIQIYKELERYFETVGEVDVEA 423

Query:   181 ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRI 240
             EL  D IE+ W R+  A Q+++ ILQ EI+RL+RLQRLA+KV RE+K VD +L +LE RI
Sbjct:   424 ELRPDAIEKAWYRMNTALQDREVILQQEIERLERLQRLADKVQREIKHVDQKLTDLEGRI 483

Query:   241 NEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQK 300
              EE RR++RLHP+DAK  V+ LE ++R  EE I  +  D   L EGRYP  S+LHK+V K
Sbjct:   484 GEEGRRIERLHPVDAKSIVEALETEIRHLEEPIQDMNQDCHVLNEGRYPHVSELHKKVNK 543

Query:   301 LHQRWVALRSLLHSRLVSPLASMSFPXXXXXXXXXXXXXXXXXXLVDTNTHFRALQEAIE 360
             LHQRW  LR+  H+ LV  L+ + +P                   +DTN HFR LQE IE
Sbjct:   544 LHQRWAQLRTNFHTNLVQKLSGLKYPVHETTVTRQTRMVVESRQ-IDTNPHFRDLQEHIE 602

Query:   361 WVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQA---EIAIH 417
             W +NKL Q+  ADYGSDL  V+ E+   Q E  II Q        + Q  +    E+A++
Sbjct:   603 WCQNKLKQLLAADYGSDLPSVKEELDRQQHEHKIIDQFHTKILNDERQQTKFSGDELALY 662

Query:   418 QREQNIIEQFHTRV 431
             Q+  N +++ +  +
Sbjct:   663 QQRLNQLQKVYAEL 676
GO:0016203 "muscle attachment" evidence=NAS;TAS
GO:0007517 "muscle organ development" evidence=NAS
GO:0007017 "microtubule-based process" evidence=ISS;NAS
GO:0008017 "microtubule binding" evidence=ISS;TAS
GO:0003779 "actin binding" evidence=ISS;TAS
GO:0016204 "determination of muscle attachment site" evidence=TAS
GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS
GO:0005856 "cytoskeleton" evidence=NAS
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0030516 "regulation of axon extension" evidence=IMP
GO:0035147 "branch fusion, open tracheal system" evidence=IEP;IMP;TAS
GO:0007424 "open tracheal system development" evidence=IMP;TAS
GO:0035149 "lumen formation, open tracheal system" evidence=IMP
GO:0007423 "sensory organ development" evidence=TAS
GO:0007409 "axonogenesis" evidence=TAS
GO:0005874 "microtubule" evidence=IDA;TAS
GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=TAS
GO:0016319 "mushroom body development" evidence=IMP
GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;TAS
GO:0030036 "actin cytoskeleton organization" evidence=TAS
GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP
GO:0030716 "oocyte fate determination" evidence=IMP
GO:0045169 "fusome" evidence=IDA
GO:0005912 "adherens junction" evidence=IDA;TAS
GO:0007050 "cell cycle arrest" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0000235 "astral microtubule" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016199 "axon midline choice point recognition" evidence=IMP
GO:0030426 "growth cone" evidence=IDA
ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZV2 PLEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q15149 PLEC "Plectin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S3A1 Plec "Plectin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S3A3 Plec "Plectin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S395 Plec "Plectin 11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S398 Plec "Plectin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S396 Plec "Plectin 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 4e-13
smart00150101 smart00150, SPEC, Spectrin repeats 5e-09
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 1e-07
cd00176213 cd00176, SPEC, Spectrin repeats, found in several 6e-07
pfam00435105 pfam00435, Spectrin, Spectrin repeat 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
COG0497557 COG0497, RecN, ATPase involved in DNA repair [DNA 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information 
 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
           F   A  L++ L E E  L S        DL+S+E L+ +H+  E+       +L   E 
Sbjct: 5   FLRDADELEAWLSEKEELLSS---TDYGDDLESVEALLKKHEALEA-------ELAAHEE 54

Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
           +  A+ + GE LI + HP A+ I+  +  +  +W  L +LA      L+ A    QF+R+
Sbjct: 55  RVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD 114

Query: 626 MKDAETWIN 634
             D E W+ 
Sbjct: 115 ADDLEQWLE 123

Length = 213
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 635
KOG0517|consensus 2473 100.0
KOG0517|consensus 2473 100.0
KOG0040|consensus 2399 100.0
KOG0040|consensus 2399 100.0
KOG0035|consensus890 99.97
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.75
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.6
smart00150101 SPEC Spectrin repeats. 99.46
COG5069612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.41
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 99.37
KOG4286|consensus 966 99.35
smart00150101 SPEC Spectrin repeats. 99.08
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 98.97
KOG4286|consensus 966 98.5
cd00014107 CH Calponin homology domain; actin-binding domain 97.05
KOG0516|consensus 1047 96.9
KOG4240|consensus 1025 96.74
KOG0035|consensus890 96.56
smart00033103 CH Calponin homology domain. Actin binding domains 96.51
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 96.32
>KOG0517|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.9e-106  Score=901.43  Aligned_cols=538  Identities=25%  Similarity=0.394  Sum_probs=501.4

Q ss_pred             ccccccccCCCCCCcccccC-CCCccCCC-------------CccCCCCCCc------cCCCC--------CCCccccCC
Q psy6471          13 GLIVPKSKREGRQGVSSSQF-CSVRDTAS-------------RLTSSGDPNP------SFSLT--------NVKWNDVDT   64 (635)
Q Consensus        13 ~~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~~~~~~~~~~------~~~~~--------~l~~ed~~~   64 (635)
                      -|||||+||+|||||||+|| ||||||||             ||++|.|+|+      +||+|        +||||||++
T Consensus       172 LLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v  251 (2473)
T KOG0517|consen  172 LLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNV  251 (2473)
T ss_pred             HHHHHHhhccCCCCcccccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCc
Confidence            48999999999999999999 99999999             9999998885      66666        599999999


Q ss_pred             CCCCcchhHhhhhhhhccCCCCCC-------CCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHH
Q psy6471          65 HEIDEKSIITYISSLYDVFPEPPA-------VHPLY--DSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMK  135 (635)
Q Consensus        65 ~~pd~~sv~tyv~~~~~~~~~~~~-------~~~~~--~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq  135 (635)
                      ..||+|||||||+.|||||++++.       |++|+  .+|+++|+.+|+.++++||.||..++..+++++|||||+|||
T Consensus       252 ~~PDEKSIITYV~~YYHyFsKmK~~~v~gKRIgkVl~~lme~ekm~~~YE~LasdLL~WI~~ti~~L~~R~f~NSL~Gvq  331 (2473)
T KOG0517|consen  252 EQPDEKSIITYVVTYYHYFSKMKQLAVEGKRIGKVLDQLMETEKMIEQYEGLASDLLEWIEQTIQTLESRKFPNSLEGVQ  331 (2473)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHH
Confidence            999999999999999999999875       45665  679999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC-CcCCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy6471         136 KLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGE-VDIDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLD  213 (635)
Q Consensus       136 ~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~-~~~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle  213 (635)
                      +++..|+.||+.||||++++||++|+++++|+++++++++ ++.|+ |+.+.|||++|..|+.++++|+.+|++|+.|++
T Consensus       332 qqL~aF~~yRT~EKPPKf~EKG~lEvLlFtiQsklrA~Nqk~y~P~eG~li~DInkAW~~LE~AEheRe~ALr~ELiRQE  411 (2473)
T KOG0517|consen  332 QQLAAFNTYRTVEKPPKFQEKGNLEVLLFTIQSKLRANNQKPYTPREGKLISDINKAWERLEKAEHERELALRAELIRQE  411 (2473)
T ss_pred             HHHHHHHhhhcccCCCccccccchHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 67777 789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChh
Q psy6471         214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS  292 (635)
Q Consensus       214 ~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~  292 (635)
                      +|++||.+|.+++...+.||++++..++.+++|. ++++|++ +|||++|++||.++++||+.|.++|+.|..++|++..
T Consensus       412 KLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~-~LaaVEAa~KKheAIetDI~AyeeRvqal~ava~eL~~E~YHd~~  490 (2473)
T KOG0517|consen  412 KLEQLARRFDRKAAMRETWLKENQRLVSQDNFGY-DLAAVEAALKKHEAIETDILAYEERVQALVAVADELEAENYHDIK  490 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            9999999999999999999999999999999996 8999997 9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy6471         293 DLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEA  372 (635)
Q Consensus       293 ~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~  372 (635)
                      .|..|.++|..+|..|.+++..|+.+                      |+.+ ..+++.|++|..+++||+|++..+.|.
T Consensus       491 rV~~r~~~V~~~W~~Ll~lL~arR~r----------------------L~~~-~~Lqklfqem~~~~d~meElk~~l~S~  547 (2473)
T KOG0517|consen  491 RVAARKDNVLRLWTYLLELLEARRQR----------------------LEQM-LALQKLFQEMLYTSDWMEELKQQLLSR  547 (2473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999743                      3333 378999999999999999999999999


Q ss_pred             ccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHH
Q psy6471         373 DYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRK  452 (635)
Q Consensus       373 ~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~  452 (635)
                      +||++|.+|+.||++|.                                        .+++.|    .+.|+.     ++
T Consensus       548 d~GkHL~gVedLLQkH~----------------------------------------LlEadI----n~~ger-----v~  578 (2473)
T KOG0517|consen  548 DVGKHLLGVEDLLQKHD----------------------------------------LLEADI----NAQGER-----VK  578 (2473)
T ss_pred             HHHHHHhhHHHHHHhhh----------------------------------------hHHhHH----HHHHHH-----HH
Confidence            99999999999998885                                        111111    133444     57


Q ss_pred             HHHHHHHHhhh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhcc
Q psy6471         453 ALNEDADKLLE--EGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNA--TKLFTEKASNLQSKLDEAERTLHSR  527 (635)
Q Consensus       453 ~L~~~a~~l~~--~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~--L~~F~~~~~e~~~Wl~eke~~l~s~  527 (635)
                      .++..|..|..  ++.+|+|++  |..++..|...|++|+++|. |+..||++  |++|+.+++++++||.||+.++++.
T Consensus       579 ~~~a~a~~f~~~~~~~~cdp~v--i~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa  656 (2473)
T KOG0517|consen  579 ALNAQALRFDSPKEYKPCDPQV--IQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSA  656 (2473)
T ss_pred             HHHHHHhhcCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            78888888876  466778754  99999999999999999999 99999987  7999999999999999999999997


Q ss_pred             cCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy6471         528 INAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLAL  607 (635)
Q Consensus       528 ~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~  607 (635)
                      +   +|+|+++|-.++.||++|+.       ||.++.+.+..+...|+.|+..|||+++.|..|+..++.+|+.|..+++
T Consensus       657 ~---~g~DLs~v~~ll~kHKalE~-------E~~~~~a~~~~~~~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~  726 (2473)
T KOG0517|consen  657 D---TGRDLSSVLRLLQKHKALED-------EMRGRDAHLKQMIREGEELVAEGHPGSDQIQERAAEIREQWQRLEALVA  726 (2473)
T ss_pred             c---ccccHHHHHHHHHHHHHHHH-------HHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7   59999999999999999999       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6471         608 CLETHLKHAAYYHQFWREMKDAETWINK  635 (635)
Q Consensus       608 ~R~~~L~~a~~~~qf~~~~~e~~~Wl~e  635 (635)
                      .|+++|++|..++|||.|++++++||++
T Consensus       727 ~r~~rL~~A~~~~QffaDAdd~~sWl~d  754 (2473)
T KOG0517|consen  727 GRGRRLQEARELYQFFADADDAESWLRD  754 (2473)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            9999999999999999999999999974

>KOG0517|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0040|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
2odv_A235 Crystal Structure Of A Fragment Of The Plakin Domai 2e-27
2odu_A235 Crystal Structure Of A Fragment Of The Plakin Domai 3e-27
1sjj_A863 Cryo-Em Structure Of Chicken Gizzard Smooth Muscle 3e-13
1hci_A476 Crystal Structure Of The Rod Domain Of Alpha-Actini 3e-09
3r6n_A 450 Crystal Structure Of A Rigid Four Spectrin Repeat F 2e-07
3pe0_A 283 Structure Of The Central Region Of The Plakin Domai 2e-07
1g8x_A1010 Structure Of A Genetically Engineered Molecular Mot 2e-06
2ycu_A995 Crystal Structure Of Human Non Muscle Myosin 2c In 2e-06
2iak_A224 Crystal Structure Of A Protease Resistant Fragment 3e-06
3pdy_A210 Structure Of The Third And Fourth Spectrin Repeats 7e-04
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of Plectin, Cys To Ala Mutant Length = 235 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%)
Query: 95  SESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQR 154
           +E Q R  EY +L   L  WMR  TA  ++R FPS+  E++ L +   +F+  E+P ++ 
Sbjct: 7   NELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEA 66
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
           DK R + I+Q L    +  G++ + P  H   +E+ W +L  A  E++  L+ E +RL+ 
Sbjct: 67  DKNRSKGIYQSLEGAVQ-AGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEA 125
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENIN 274
           LQR+  K+  E    + +L + ++ +  + R L              +E DL +A+  I 
Sbjct: 126 LQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLA---AGKVPQRAGEVERDLDKADSMIR 182
Query: 275 TLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLAS 322
            LF+DVQTL++GR+PQ   +++RV +LH+R VA+R+  + RL + +A+
Sbjct: 183 LLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAA 230
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of Plectin Length = 235 Back     alignment and structure
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863 Back     alignment and structure
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin Length = 476 Back     alignment and structure
>pdb|3R6N|A Chain A, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment Of The Human Desmoplakin Plakin Domain Length = 450 Back     alignment and structure
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of Plectin Length = 283 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1) Length = 224 Back     alignment and structure
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The Plakin Domain Of Plectin Length = 210 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 2e-50
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 2e-07
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 2e-43
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 3e-42
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 2e-05
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 8e-21
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 1e-20
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 2e-17
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 4e-06
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 6e-20
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 7e-20
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 2e-19
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 2e-04
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-19
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 2e-12
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-07
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 2e-15
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 1e-09
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 6e-06
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 6e-15
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-08
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 7e-15
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 2e-12
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 4e-07
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 2e-04
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 1e-14
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 3e-13
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 2e-11
3edv_A 323 Spectrin beta chain, brain 1; spectrin repeat, coi 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 9e-14
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-10
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 4e-13
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 3e-10
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 1e-08
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 5e-13
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 1e-12
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 2e-12
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 4e-06
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 3e-10
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 6e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-09
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 1e-06
1bhd_A118 Utrophin; calponin homology, actin binding, struct 4e-06
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 6e-06
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 2e-05
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 2e-05
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 4e-05
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 1e-04
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 1e-04
2d88_A121 Protein mical-3; all alpha, calponin homology doma 1e-04
1wyl_A116 NEDD9 interacting protein with calponin homology a 2e-04
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 5e-04
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
 Score =  187 bits (474), Expect = 2e-50
 Identities = 98/574 (17%), Positives = 196/574 (34%), Gaps = 72/574 (12%)

Query: 60  NDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDS---------ESQQRVNEYCDLASS 110
           + V T   DEK+I+TY+SS Y  F          +          E++Q + +Y  LAS 
Sbjct: 202 DIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASD 261

Query: 111 LHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYF 170
           L  W+R    ++++R   +T+  M++   D   +R    PP+ ++K +L+  F  L    
Sbjct: 262 LLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKL 321

Query: 171 EDVGEVDIDP--ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKR 228
                    P     +  I   W  L  A +  +  L +EI+RL+RL  LAEK  ++   
Sbjct: 322 RLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASI 381

Query: 229 VDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGR 287
            +   +  E+ + ++      L  + A     +  E DL   ++ +  + +  Q L E  
Sbjct: 382 HESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD 441

Query: 288 YPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVD 347
           Y  +  ++ R QK+  +W  L +L   R               R    +T  ++ET    
Sbjct: 442 YYDSPSVNARCQKICDQWDNLGALTQKR---------------REALERTEKLLETIDQL 486

Query: 348 TNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDL 407
              + +       W++  +  +Q+      ++ +Q     H++ +  +    +       
Sbjct: 487 YLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKE------ 540

Query: 408 QGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDP 467
              QA + IH     I++ +H           +A          + +N   + + +    
Sbjct: 541 --RQAILGIHNEVSKIVQTYHV---------NMAGTNPYTTITPQEINGKWEHVRQLVPR 589

Query: 468 SDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSR 527
            D  L        +  RL  +F  +A               K   +     E   TL  +
Sbjct: 590 RDQALMEEHARQQQNERLRKQFGAQANVIGPWIQ------TKMEEIGRISIEMHGTLEDQ 643

Query: 528 INAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKC 587
           +N                       L+     +   + +   ++   + +        K 
Sbjct: 644 LNH----------------------LRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKH 681

Query: 588 IEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQ 621
               M  ++  W  LL         +++      
Sbjct: 682 TNYTMEHIRVGWEQLLTTIARTINEVENQILTRD 715
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 250 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127 Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118 Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Length = 107 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 100.0
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 100.0
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 100.0
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 100.0
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 100.0
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 100.0
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.98
3r6n_A450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 99.97
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.97
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.97
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.96
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.96
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.96
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.96
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.95
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.95
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.95
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.94
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.94
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.93
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.92
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.92
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.92
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.9
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.9
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 99.89
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.89
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.88
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 99.86
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.84
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.83
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 99.83
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.83
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.82
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 99.81
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.79
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.78
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.76
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.76
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.75
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.73
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.73
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.72
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.69
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.64
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.63
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 99.63
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.63
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.62
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 99.57
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 99.5
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 99.48
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 99.43
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.39
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 99.38
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 99.37
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 99.35
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 99.35
3hoc_A272 Filamin-A; calponin homology domain, actin binding 99.28
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 99.24
3uun_A119 Dystrophin; triple helical, cell structure and sta 99.22
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 99.17
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 98.91
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 98.79
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 98.74
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 98.62
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 98.58
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.5
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.42
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 98.39
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
Probab=100.00  E-value=9e-58  Score=538.64  Aligned_cols=527  Identities=18%  Similarity=0.282  Sum_probs=440.0

Q ss_pred             cccccccccCCCCCCcccccC-CCCccCCC-------------CccCCCCCCcc------CCCC--------CCCcccc-
Q psy6471          12 YGLIVPKSKREGRQGVSSSQF-CSVRDTAS-------------RLTSSGDPNPS------FSLT--------NVKWNDV-   62 (635)
Q Consensus        12 ~~~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~~~~~~~~~~~------~~~~--------~l~~ed~-   62 (635)
                      --|.||+.+|+||+||+|+|| +||+||+|             ||+.+.+.++.      |++|        +|+|+|| 
T Consensus       125 ~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~  204 (863)
T 1sjj_A          125 GLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIV  204 (863)
T ss_dssp             TTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHT
T ss_pred             HHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHh
Confidence            347899999999999999999 99999999             77877766543      3222        4999996 


Q ss_pred             CCCCCCcchhHhhhhhhhccCCCCCC-------CCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHH
Q psy6471          63 DTHEIDEKSIITYISSLYDVFPEPPA-------VHPLY--DSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIE  133 (635)
Q Consensus        63 ~~~~pd~~sv~tyv~~~~~~~~~~~~-------~~~~~--~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~  133 (635)
                      .++.||++||||||++||++|++.+.       +++++  .+|++.+.++|+..+++++.||.+++..+.+++||+++.+
T Consensus       205 ~~~~pd~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~y~~~~~el~~Wi~~~~~~l~~~~~~~~l~~  284 (863)
T 1sjj_A          205 GTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQA  284 (863)
T ss_dssp             TCSSCCHHHHHHHHHHTTTTTCCCSCSTTCCTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCCCSSHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCHHH
Confidence            67899999999999999999998765       23333  4688999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCc-CCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6471         134 MKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVD-IDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKR  211 (635)
Q Consensus       134 vq~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~~~-~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~r  211 (635)
                      ++.++.+|..|+..++||++.+++.++++++.+++.+...+++. .|+ +..+.+|+.+|..|..+..+|+.+|..++.|
T Consensus       285 v~~~l~~~~~~~~~~k~~~~~e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L~~~~~~r~~~l~~~~~R  364 (863)
T 1sjj_A          285 MQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRR  364 (863)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHHHHHHTTTHHHHHHHHEE
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887777643 454 6899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy6471         212 LDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQ  290 (635)
Q Consensus       212 le~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~  290 (635)
                      +++|++++.+|.+++..+..||.+++..+.++++|..++..|+. +++|++|+++|.+++++|..|...|+.|+..+|++
T Consensus       365 ~~~Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~  444 (863)
T 1sjj_A          365 LERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD  444 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999999999999999998888557888887 89999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhhHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q psy6471         291 ASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVD-TNTHFRALQEAIEWVKNKLAQI  369 (635)
Q Consensus       291 ~~~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~~~le~~~~~-~~~f~~~~~e~~~Wl~e~~~~l  369 (635)
                      ++.|..+++.|..+|+.|...+..|+.               .|+++....+. +-+ ..+|+++++++.+||.+++..+
T Consensus       445 ~~~I~~~~~~l~~~W~~L~~~~~~R~~---------------~L~~~l~~~q~-~~~l~~~f~~~a~~~~~Wl~~~e~~l  508 (863)
T 1sjj_A          445 SPSVNARCQKICDQWDNLGALTQKRRE---------------ALERTEKLLET-IDQLYLEYAKRAAPFNNWMEGAMEDL  508 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-HHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999964               45555322211 001 2279999999999999999999


Q ss_pred             hhcccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHH
Q psy6471         370 QEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNA  449 (635)
Q Consensus       370 ~s~~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~  449 (635)
                      .+.++|+|+.+|+.++++|..+                             ..++..+...+..+.              
T Consensus       509 ~~~~~g~dl~~ve~ll~kh~~~-----------------------------~~~l~~~~~~~~~~~--------------  545 (863)
T 1sjj_A          509 QDTFIVHTIEEIQGLTTAHEQF-----------------------------KATLPDADKERQAIL--------------  545 (863)
T ss_dssp             HCCCCCSSSGGGHHHHHHHHHH-----------------------------HTTHHHHHHHHHHHH--------------
T ss_pred             cchHhhccHHHHHHHHHHHHHH-----------------------------HhHHHHHHHHHHHHH--------------
Confidence            9999999999999998888642                             333333433333221              


Q ss_pred             HHHHHHHHHHHhhhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHH
Q psy6471         450 IRKALNEDADKLLEEGD----PSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNAT----------KLFTEKASNLQ  514 (635)
Q Consensus       450 ~~~~L~~~a~~l~~~~~----~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~L----------~~F~~~~~e~~  514 (635)
                         .+......+.+.+.    ...+   .+..++..|..+|+.|+.++. |+.+|++++          ++|.++++++.
T Consensus       546 ---~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~  619 (863)
T 1sjj_A          546 ---GIHNEVSKIVQTYHVNMAGTNP---YTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIG  619 (863)
T ss_dssp             ---HHHHHHHHHHHTTTCCCCSCCS---SSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhcccccCCCC---CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence               11112222221111    1111   134567899999999999999 999998733          67789999999


Q ss_pred             HhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy6471         515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAA  594 (635)
Q Consensus       515 ~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~  594 (635)
                      .||.+++..+.+.++   | ...+++.++++|++|+.       +|.++...+..+...++.|...++++.+.+...++.
T Consensus       620 ~Wi~e~e~~l~~~~~---~-~~~~le~~l~~~~~~~~-------el~~~~~~i~~l~~l~~~L~~~~~~~~~~~~~s~e~  688 (863)
T 1sjj_A          620 PWIQTKMEEIGRISI---E-MHGTLEDQLNHLRQYEK-------SIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEH  688 (863)
T ss_dssp             HHHHHHHHHTTSCTT---C-TTTSSHHHHHHHHHHHH-------HHHTTGGGHHHHHHHHHHHHTTTCCCCTTCSSTTHH
T ss_pred             HHHHHHHHHHHhhcc---C-CCCCHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhcCCCCCcccccHHH
Confidence            999999999998652   3 12456678899999988       999999999999999999999988777777788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy6471         595 MQSQWAWLLQLALCLETHLK  614 (635)
Q Consensus       595 L~~~W~~L~~~~~~R~~~L~  614 (635)
                      +...|..+...+..+...++
T Consensus       689 l~i~~~eF~~~~~~~~~~~e  708 (863)
T 1sjj_A          689 IRVGWEQLLTTIARTINEVE  708 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHH
Confidence            99999999888877765444
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 635
d1hcia1125 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sap 2e-24
d1cuna2104 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken 5e-08
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 6e-08
d1quua1124 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie 2e-07
d1u5pa2101 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke 8e-08
d1u5pa1110 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke 2e-07
d2spca_107 a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. 7e-07
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 3e-06
d1quua2124 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sap 2e-04
d1dxxa2127 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie 1e-04
d1owaa_156 a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sap 2e-04
d1sh5a2110 a.40.1.1 (A:128-237) Actin binding domain of plect 3e-04
d1hcia4114 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sap 8e-04
d1s35a2105 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human ( 0.001
d1bkra_108 a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) 0.003
d1bhda_108 a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI 0.004
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (241), Expect = 2e-24
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 96  ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRD 155
           E+++ + EY  LAS L  W+R    ++++R    T+  M+K   D   +R +  PP+ ++
Sbjct: 7   ENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQE 66

Query: 156 KQRLQHIFQDLTKYFEDVGEVDIDP--ELHIDVIERNWSRLLAAHQEKDSILQDEIKRL 212
           K +L+  F  L             P     +  I   W RL  A +  +  L +EI+RL
Sbjct: 67  KCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRL 125
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101 Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110 Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.71
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.71
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.69
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.69
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.68
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.67
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.66
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.64
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.62
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.59
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.55
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.44
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 99.38
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.36
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.34
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 99.33
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 99.33
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.32
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 99.14
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 98.85
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 98.72
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 98.55
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 98.2
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.15
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 97.01
d1hcia1125 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 95.16
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.8e-22  Score=172.42  Aligned_cols=120  Identities=26%  Similarity=0.427  Sum_probs=114.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHh
Q psy6471          93 YDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFED  172 (635)
Q Consensus        93 ~~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~  172 (635)
                      +++|++.++.+|+++|++|+.||+.++..+.++.||+|+.+|+.++.+|.+|+++|+||++.+++.+++++++|++++..
T Consensus         4 ~~~e~e~l~~eY~~~As~Ll~Wi~~~~~~L~dr~f~~t~~~iq~~l~~f~~yr~~ekp~~~~Ek~~l~~l~~~lqt~~~~   83 (125)
T d1hcia1           4 VNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRI   83 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHHTHHHHHHHHHHTTTHHHHTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCC-CcCCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy6471         173 VGE-VDIDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRL  212 (635)
Q Consensus       173 ~~~-~~~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rl  212 (635)
                      .++ .+.|| |+.+.+|+.+|..|..++++|+.+|+.|+.||
T Consensus        84 ~n~~~~~P~~gl~~~di~~~W~~L~~ae~~Re~~L~~El~Rl  125 (125)
T d1hcia1          84 SNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRL  125 (125)
T ss_dssp             TTSCCCCCCGGGCSSSHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            887 55677 79999999999999999999999999999886
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure