Psyllid ID: psy6472

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHIF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccc
Coil and Loop (DISEMBL)
MKRVDGRLEELESRINEEARRldrlhpldakhnvdVLEHDLRQAEENINTLFSdvqtlregrypqasdlhif
Flexible Loop (DISEMBL)
MKRVDGRLEELESRINEearrldrlhpldaKHNVDVLEHDLRQAEENINtlfsdvqtlregrypqasdlhif
Low Complexity Region (SEG)
MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHIF
Disordered region (IsUnstruct)
***********************************VL**********INTLF********************
Disordered Region (DISOPRED)
*****GR*EELES*************PLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQ****HIF
Disordered Region (DISEMBL)
********EELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHIF
Disordered Region (DISPRO)
**RVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxLDRLHPLDAKHNxxxxxxxxxxxxxxxxxxxxxxxxxxxxRYPQASDLHIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
307197317	1396	Plectin-1 [Harpegnathos saltator]	0.972	0.050	0.642	4e-18
383850429	8596	PREDICTED: LOW QUALITY PROTEIN: microtub	0.972	0.008	0.642	7e-18
307169992	8605	Bullous pemphigoid antigen 1, isoforms 6	0.972	0.008	0.628	1e-17
340728301	3568	PREDICTED: microtubule-actin cross-linki	0.958	0.019	0.637	9e-17
350403208	3562	PREDICTED: microtubule-actin cross-linki	0.958	0.019	0.637	9e-17
328713958	5303	PREDICTED: microtubule-actin cross-linki	0.958	0.013	0.652	2e-16
328713956	5324	PREDICTED: microtubule-actin cross-linki	0.958	0.012	0.652	2e-16
328713966	5295	PREDICTED: microtubule-actin cross-linki	0.958	0.013	0.652	2e-16
328713964	5304	PREDICTED: microtubule-actin cross-linki	0.958	0.013	0.652	2e-16
328713960	5312	PREDICTED: microtubule-actin cross-linki	0.958	0.012	0.652	2e-16

>gi|307197317|gb|EFN78609.1| Plectin-1 [Harpegnathos saltator]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 54/70 (77%)

Query: 1   MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
           MK  D RLEELE R+ +EARRLDRLHPL+AKH VD+LE D+R  E  I  +F+DV TL E
Sbjct: 387 MKTTDNRLEELERRVEDEARRLDRLHPLEAKHAVDLLEQDIRNTETQIQNIFTDVHTLTE 446

Query: 61  GRYPQASDLH 70
           GRY QA++LH
Sbjct: 447 GRYSQAAELH 456

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850429|ref|XP_003700798.1| PREDICTED: LOW QUALITY PROTEIN: microtubule-actin cross-linking factor 1-like [Megachile rotundata]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 54/70 (77%)

Query: 1   MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
           MK  D RLEELE R+ +EARRLDRLHPL+AKH VD+LE D+R  E  I  +F+DV TL E
Sbjct: 387 MKSTDNRLEELERRVEDEARRLDRLHPLEAKHAVDLLEQDIRNTEIQIQNIFTDVHTLTE 446

Query: 61  GRYPQASDLH 70
           GRY QA++LH
Sbjct: 447 GRYSQAAELH 456

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169992|gb|EFN62471.1| Bullous pemphigoid antigen 1, isoforms 6/9/10 [Camponotus floridanus]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 53/70 (75%)

Query: 1   MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
           MK  D RLEELE R+ +EAR+LDRLHPL+AKH VD+LE D+R  E  I  +F+DV TL E
Sbjct: 388 MKTTDNRLEELERRVEDEARKLDRLHPLEAKHAVDLLEQDIRSTETQIQNIFTDVHTLTE 447

Query: 61  GRYPQASDLH 70
           GRY QA +LH
Sbjct: 448 GRYSQAPELH 457

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728301|ref|XP_003402464.1| PREDICTED: microtubule-actin cross-linking factor 1-like [Bombus terrestris]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 52/69 (75%)

Query: 1   MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
           MK  D RLEELE R+ +EARRLDRLHPL+AKH VD+LE D+R  E  I  +F DV TL E
Sbjct: 407 MKATDNRLEELERRVEDEARRLDRLHPLEAKHAVDLLEQDIRNTEVQIQNIFPDVHTLTE 466

Query: 61  GRYPQASDL 69
           GRY QA++L
Sbjct: 467 GRYSQAAEL 475

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403208|ref|XP_003486732.1| PREDICTED: microtubule-actin cross-linking factor 1-like [Bombus impatiens]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 52/69 (75%)

Query: 1   MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
           MK  D RLEELE R+ +EARRLDRLHPL+AKH VD+LE D+R  E  I  +F DV TL E
Sbjct: 401 MKATDNRLEELERRVEDEARRLDRLHPLEAKHAVDLLEQDIRNTEVQIQNIFPDVHTLTE 460

Query: 61  GRYPQASDL 69
           GRY QA++L
Sbjct: 461 GRYSQAAEL 469

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713958|ref|XP_003245223.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 3 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 2   KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
           KR D +L+ELE+RI EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREG
Sbjct: 402 KRTDLKLDELETRIVEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREG 461

Query: 62  RYPQASDLH 70
           RY QA +L 
Sbjct: 462 RYVQAPELQ 470

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713956|ref|XP_003245222.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 2 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 2   KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
           KR D +L+ELE+RI EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREG
Sbjct: 402 KRTDLKLDELETRIVEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREG 461

Query: 62  RYPQASDLH 70
           RY QA +L 
Sbjct: 462 RYVQAPELQ 470

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713966|ref|XP_003245226.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 6 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 2   KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
           KR D +L+ELE+RI EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREG
Sbjct: 402 KRTDLKLDELETRIVEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREG 461

Query: 62  RYPQASDLH 70
           RY QA +L 
Sbjct: 462 RYVQAPELQ 470

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713964|ref|XP_003245225.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 5 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 2   KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
           KR D +L+ELE+RI EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREG
Sbjct: 411 KRTDLKLDELETRIVEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREG 470

Query: 62  RYPQASDLH 70
           RY QA +L 
Sbjct: 471 RYVQAPELQ 479

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713960|ref|XP_003245224.1| PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 4 [Acyrthosiphon pisum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 2   KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
           KR D +L+ELE+RI EE RR DRLHPLDAKHN D LE +LR +E+ I +LF DVQ LREG
Sbjct: 411 KRTDLKLDELETRIVEEGRRADRLHPLDAKHNADQLETELRLSEDTIQSLFVDVQALREG 470

Query: 62  RYPQASDLH 70
           RY QA +L 
Sbjct: 471 RYVQAPELQ 479

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0013733	8805	shot "short stop" [Drosophila	0.972	0.007	0.514	2.9e-12

FB|FBgn0013733 shot "short stop" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query:     1 MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60
             +K VD +L +LE RI EE RR++RLHP+DAK  V+ LE ++R  EE I  +  D   L E
Sbjct:   469 IKHVDQKLTDLEGRIGEEGRRIERLHPVDAKSIVEALETEIRHLEEPIQDMNQDCHVLNE 528

Query:    61 GRYPQASDLH 70
             GRYP  S+LH
Sbjct:   529 GRYPHVSELH 538


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  11 22  0.50    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  409 (44 KB)
  Total size of DFA:  75 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  12.55u 0.07s 12.62t   Elapsed:  00:00:06
  Total cpu time:  12.55u 0.07s 12.62t   Elapsed:  00:00:07
  Start:  Thu Aug 15 13:57:46 2013   End:  Thu Aug 15 13:57:53 2013

GO:0016203 "muscle attachment" evidence=NAS;TAS

GO:0007517 "muscle organ development" evidence=NAS

GO:0007017 "microtubule-based process" evidence=ISS;NAS

GO:0008017 "microtubule binding" evidence=ISS;TAS

GO:0003779 "actin binding" evidence=ISS;TAS

GO:0016204 "determination of muscle attachment site" evidence=TAS

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030516 "regulation of axon extension" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IEP;IMP;TAS

GO:0007424 "open tracheal system development" evidence=IMP;TAS

GO:0035149 "lumen formation, open tracheal system" evidence=IMP

GO:0007423 "sensory organ development" evidence=TAS

GO:0007409 "axonogenesis" evidence=TAS

GO:0005874 "microtubule" evidence=IDA;TAS

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=TAS

GO:0016319 "mushroom body development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP

GO:0030716 "oocyte fate determination" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA;TAS

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0000235 "astral microtubule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0030426 "growth cone" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	85.69

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=85.69  E-value=5.4  Score=23.53  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472          14 RINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL   58 (72)
Q Consensus        14 ~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L   58 (72)
                      -|..-+.++.....-+-...+..++.+|.+++++|.+|=..|+-+
T Consensus         7 ~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~   51 (79)
T PF05008_consen    7 EIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSL   51 (79)
T ss_dssp             HHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344444455554445788889999999999999999998877643

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	7e-05

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Length = 235

 Score = 37.8 bits (87), Expect = 7e-05
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 1   MKRVDGRLEELESRINEEARRL----DRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 56
           + ++       E ++N+    L      L           +E DL +A+  I  LF+DVQ
Sbjct: 130 VTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQ 189

Query: 57  TLREGRYPQASDLH 70
           TL++GR+PQ   ++
Sbjct: 190 TLKDGRHPQGEQMY 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	99.4
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	96.08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	95.84
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	88.92
1vcs_A	102	Vesicle transport through interaction with T- snar	88.11
2qyw_A	102	Vesicle transport through interaction with T-SNAR	86.62
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	85.6

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=99.40  E-value=4.5e-13  Score=95.75  Aligned_cols=68  Identities=28%  Similarity=0.418  Sum_probs=62.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccc
Q psy6472           1 MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHI   71 (72)
Q Consensus         1 ~~~ceekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql~~   71 (72)
                      ++.||++|+.+++.|++|.+.++++.|+++   ++.+++||..+|+.|+++|+||+.|++|+||+|+++++
T Consensus       137 a~~~e~~L~~~~~~L~~d~~~l~~~~a~k~---~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~  204 (235)
T 2odv_A          137 AGLAEEQLNQADALLQSDVRLLAAGKVPQR---AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYR  204 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTCCCSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            357999999999999999999999988766   56789999999999999999999999999999999874

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=96.08  E-value=0.00043  Score=57.43  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhcCCcchhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCccccc
Q psy6472           1 MKRVDGRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEENIN-TLFSDVQTLREGRYPQASDLH   70 (72)
Q Consensus         1 ~~~ceekL~~~~~~lq~d~rrle~g~p~q~~-~~v~~~e~dL~~~E~~Ir-~lf~DVq~LkdgrypQa~ql~   70 (72)
                      +..||.+|+..+..|+++. +-++..++++. +..+.++.||...|+.|. .++.+++.|.+++||+++++.
T Consensus       887 a~~~e~Wl~eke~~l~s~d-~g~dl~~vqallkKhea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~  957 (995)
T 2ycu_A          887 LKKLENWATTKSVYLGSNE-TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT  957 (995)
T ss_dssp             CCCCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4568899999999999864 35667777755 677889999999999998 999999999999999998875

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=95.84  E-value=0.0012  Score=54.98  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcCCcchhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCccccc
Q psy6472           3 RVDGRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEENIN-TLFSDVQTLREGRYPQASDLH   70 (72)
Q Consensus         3 ~ceekL~~~~~~lq~d~rrle~g~p~q~~-~~v~~~e~dL~~~E~~Ir-~lf~DVq~LkdgrypQa~ql~   70 (72)
                      .++++|+..++.|.++. +-.+..++++. +..+.++.||...|+.|+ .+..+++.|.+++|++++++.
T Consensus       897 ~~e~Wl~ek~~~l~s~d-~g~dL~~Vqal~KKhea~e~dl~a~e~ri~~~l~~~a~eL~~~~y~~~~~I~  965 (1010)
T 1g8x_A          897 KLENWATTKSVYLGSNE-TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT  965 (1010)
T ss_dssp             HHHHHHHHTHHHHSSCC-SCCSTTTTGGGTTSHHHHTTTTTHHHHTHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            35566666666655532 22235566555 667889999999999999 999999999999999998875

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=88.92  E-value=0.21  Score=36.25  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472          35 DVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL   69 (72)
Q Consensus        35 ~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql   69 (72)
                      ..++.||...+..|..++...+.|.++.||.+..+
T Consensus       175 ~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I  209 (476)
T 1hci_A          175 EAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNV  209 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHH
Confidence            57889999999999999999999999999998764

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=88.11  E-value=3.2  Score=25.59  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472           4 VDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL   58 (72)
Q Consensus         4 ceekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L   58 (72)
                      .|.....+-+-|..-+.++-....-+-++.+..+++.|++++.+|++|=-.|+-+
T Consensus        10 YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~   64 (102)
T 1vcs_A           10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI   64 (102)
T ss_dssp             SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3555555566666666666665556678889999999999999999998777654

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=86.62  E-value=4  Score=25.17  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcC-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472           4 VDGRLEELESRINEEARRLDRL-HPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL   58 (72)
Q Consensus         4 ceekL~~~~~~lq~d~rrle~g-~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L   58 (72)
                      .|.....+-+-|..-+.++-.. .+-+-++.+..+++.|++++.+|++|=-.|+-+
T Consensus        20 YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~   75 (102)
T 2qyw_A           20 LHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA   75 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3455555566666666667433 456778889999999999999999998777653

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=85.60  E-value=4.4  Score=24.71  Aligned_cols=53  Identities=4%  Similarity=0.011  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472           6 GRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL   58 (72)
Q Consensus         6 ekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L   58 (72)
                      .....+-+-|..-+.++-+...-+-++.+..+++.|.+++.+|++|=..|+.+
T Consensus         8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~   60 (97)
T 3onj_A            8 SDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33444444455555556555555778889999999999999999999888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	89.93

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.93  E-value=1  Score=26.05  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472           5 DGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL   58 (72)
Q Consensus         5 eekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L   58 (72)
                      |...-.+-+.|..-+.++-+...-+-++.+..++..|++++.+|++|=-.|+-+
T Consensus         4 E~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~   57 (89)
T d1vcsa1           4 EQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI   57 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            444555566666777777777778899999999999999999999998877643