Psyllid ID: psy6476
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| Q16UF8 | 619 | Eukaryotic translation in | N/A | N/A | 0.943 | 0.831 | 0.723 | 0.0 | |
| Q7QBW3 | 584 | Eukaryotic translation in | yes | N/A | 0.943 | 0.881 | 0.711 | 0.0 | |
| B0X6P7 | 612 | Eukaryotic translation in | N/A | N/A | 0.946 | 0.844 | 0.720 | 0.0 | |
| Q0ZB77 | 549 | Eukaryotic translation in | N/A | N/A | 0.954 | 0.948 | 0.716 | 0.0 | |
| B4K892 | 563 | Eukaryotic translation in | N/A | N/A | 0.959 | 0.930 | 0.675 | 0.0 | |
| B4PNV2 | 560 | Eukaryotic translation in | N/A | N/A | 0.950 | 0.926 | 0.667 | 0.0 | |
| B4JTN0 | 563 | Eukaryotic translation in | N/A | N/A | 0.948 | 0.920 | 0.679 | 0.0 | |
| B4R222 | 560 | Eukaryotic translation in | N/A | N/A | 0.950 | 0.926 | 0.665 | 0.0 | |
| B3P8G6 | 560 | Eukaryotic translation in | N/A | N/A | 0.950 | 0.926 | 0.665 | 0.0 | |
| B4HFV9 | 560 | Eukaryotic translation in | N/A | N/A | 0.950 | 0.926 | 0.665 | 0.0 |
| >sp|Q16UF8|EIF3D_AEDAE Eukaryotic translation initiation factor 3 subunit D OS=Aedes aegypti GN=eIF3-S7 PE=3 SV=1 | Back alignment and function desciption |
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Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/528 (72%), Positives = 433/528 (82%), Gaps = 13/528 (2%)
Query: 10 FPPPMIQDNVNGWGPCDMPQQFKDMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQSQF 69
F P +Q N GWGPC++P FKD+PYQPFSK DRLGKISDWTG A DKKY NKY SQF
Sbjct: 14 FEAPQLQFNEEGWGPCELPDAFKDIPYQPFSKSDRLGKISDWTGTAQTDKKYPNKYASQF 73
Query: 70 GSGSQYAYYHEEDESTFHLVDTTRIQKPPYQRGR---NMRGRGGGRGGAQAQFQLLGKGF 126
G G+QYAYYHEEDE+TFHLVD+ RIQK P+QRGR N+R + G G + Q G
Sbjct: 74 GGGNQYAYYHEEDETTFHLVDSARIQKQPHQRGRFRGNLRNQRGRGRGGRGGVQA-GGMT 132
Query: 127 KLRDRDRKGQSGAKRYGKTQNIRNNKNQAPIKNRDASVTVRSDWVTIEEMDFARFSKLSL 186
L KG+ +R G T R + P K RDASV VR DWVT+EEMDF R SKLSL
Sbjct: 133 TLSKNATKGRD--QRRGTT---RKWGARPPPKIRDASVAVRPDWVTVEEMDFPRLSKLSL 187
Query: 187 PNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSNERIFHTVTTTDDPIIRKLSKTEGN 246
PNV++ +D+ CG++E+YDK+YDRVN KNEKPL +RIFHTVTTTDDP+IR LSK+ GN
Sbjct: 188 PNVEKGEDITTCGTLEYYDKTYDRVNVKNEKPLQRVDRIFHTVTTTDDPVIRLLSKSHGN 247
Query: 247 VYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQT 306
VYATD ILAT+MCCTRSNYSWDIVIEKIGDKLF DKRDNTEFDLLTVNET+ +PP+++
Sbjct: 248 VYATDAILATIMCCTRSNYSWDIVIEKIGDKLFMDKRDNTEFDLLTVNETAIEPPNEDGN 307
Query: 307 SINSPRNLALEATFINHNFSQQVLKSG--DARHSFDNPNPFISEEEEEEGEVASVAYKYR 364
S+NSPRNLA+EATFINHNFSQQVLKSG + ++ FD PNPFI ++E+GEVASVAY+YR
Sbjct: 308 SLNSPRNLAIEATFINHNFSQQVLKSGEKEPKYKFDQPNPFIG--DDEDGEVASVAYRYR 365
Query: 365 KWDLGEGIGLVARCEHDGVLASPNGDLQFLNIKALNEWDSKLSGGVEWRQKLDVQRGAVL 424
KWDL GI LVARCEHD VL +P GD QFL IKALNEWDSK++ GVEWRQKLD QRGAVL
Sbjct: 366 KWDLNNGIELVARCEHDAVLLTPQGDTQFLTIKALNEWDSKVANGVEWRQKLDTQRGAVL 425
Query: 425 ANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEFAGQIN 484
ANELRNNSCKLAKWTVQALLAGS QIKFGYVSRA VRD++RHVILGTQQ+KP EFA QIN
Sbjct: 426 ANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAHVRDSSRHVILGTQQFKPQEFANQIN 485
Query: 485 LNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDIPDNTFDS 532
L+MDNAWGILRCIIDIC+KQKDGKYLIMKDPNKP+IRLYDIPDNTF+S
Sbjct: 486 LSMDNAWGILRCIIDICMKQKDGKYLIMKDPNKPMIRLYDIPDNTFES 533
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Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Aedes aegypti (taxid: 7159) |
| >sp|Q7QBW3|EIF3D_ANOGA Eukaryotic translation initiation factor 3 subunit D OS=Anopheles gambiae GN=eIF3-S7 PE=3 SV=3 | Back alignment and function description |
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| >sp|B0X6P7|EIF3D_CULQU Eukaryotic translation initiation factor 3 subunit D OS=Culex quinquefasciatus GN=eIF3-S7 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0ZB77|EIF3D_BOMMO Eukaryotic translation initiation factor 3 subunit D OS=Bombyx mori GN=eIF3-S7 PE=2 SV=1 | Back alignment and function description |
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| >sp|B4K892|EI3D1_DROMO Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila mojavensis GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4PNV2|EI3D1_DROYA Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila yakuba GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4JTN0|EI3D1_DROGR Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila grimshawi GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4R222|EI3D1_DROSI Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila simulans GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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| >sp|B3P8G6|EI3D1_DROER Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila erecta GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4HFV9|EI3D1_DROSE Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila sechellia GN=eIF-3p66 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 242017404 | 555 | eukaryotic translation initiation factor | 0.946 | 0.931 | 0.798 | 0.0 | |
| 340722070 | 562 | PREDICTED: eukaryotic translation initia | 0.948 | 0.921 | 0.783 | 0.0 | |
| 237681128 | 562 | eukaryotic initiation factor 3 p66 subun | 0.972 | 0.944 | 0.764 | 0.0 | |
| 270011621 | 560 | hypothetical protein TcasGA2_TC005665 [T | 0.968 | 0.944 | 0.769 | 0.0 | |
| 332019187 | 562 | Eukaryotic translation initiation factor | 0.945 | 0.918 | 0.784 | 0.0 | |
| 328720748 | 564 | PREDICTED: eukaryotic translation initia | 0.974 | 0.943 | 0.762 | 0.0 | |
| 383860221 | 562 | PREDICTED: eukaryotic translation initia | 0.948 | 0.921 | 0.777 | 0.0 | |
| 307212308 | 561 | Eukaryotic translation initiation factor | 0.956 | 0.930 | 0.769 | 0.0 | |
| 307182366 | 561 | Eukaryotic translation initiation factor | 0.950 | 0.925 | 0.775 | 0.0 | |
| 322789376 | 569 | hypothetical protein SINV_15552 [Solenop | 0.946 | 0.908 | 0.774 | 0.0 |
| >gi|242017404|ref|XP_002429179.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] gi|212514057|gb|EEB16441.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/532 (79%), Positives = 464/532 (87%), Gaps = 15/532 (2%)
Query: 7 LPHFPPPMIQDNVNGWGPCDMPQQFKDMPYQPFSKGDRLGK--ISDWTGLAFQDKKYINK 64
+P F P+IQDNVNGWGPCDMP+QFKDMPYQPFSKGDRLGK ISDW G AFQDKKYINK
Sbjct: 9 VPKFVAPVIQDNVNGWGPCDMPEQFKDMPYQPFSKGDRLGKASISDWAGTAFQDKKYINK 68
Query: 65 YQSQFGSGSQYAYYHEEDESTFHLVDTTRIQKPPYQRGR------NMRGRGGGRGGAQAQ 118
YQSQFG+GSQYAYYHEEDESTFHLVDTTR+QKPPYQRGR N+RGRGG RG +Q
Sbjct: 69 YQSQFGAGSQYAYYHEEDESTFHLVDTTRVQKPPYQRGRFKQNRPNLRGRGGQRG-TTSQ 127
Query: 119 FQLLGKGFKLRDRDRKGQSGAKRYGKTQNIRNNKNQAPIKNRDASVTVRSDWVTIEEMDF 178
QLL KG KLRD+ + K++ + +RN KNQ PIKNRDASVTVR+DWVTIEEMDF
Sbjct: 128 LQLLTKGPKLRDK----KVQQKKWSRQPGLRNQKNQPPIKNRDASVTVRADWVTIEEMDF 183
Query: 179 ARFSKLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSNERIFHTVTTTDDPIIR 238
R +KLSLPNVKE D+ CCGS+E+YDK+YDRVN KNEKPL +RIFHTVTTTDDPIIR
Sbjct: 184 PRLAKLSLPNVKEGVDIMCCGSLEYYDKAYDRVNVKNEKPLQRIDRIFHTVTTTDDPIIR 243
Query: 239 KLSKTEGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQ 298
KLSKTEGNVYATD ILA +MC TRSNYSWDIVIEKIG KLFFDKRDNTEFDLLTVNETS
Sbjct: 244 KLSKTEGNVYATDAILAAIMCSTRSNYSWDIVIEKIGHKLFFDKRDNTEFDLLTVNETSV 303
Query: 299 DPPSDEQTSINSPRNLALEATFINHNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVAS 358
+PP D+ S NSPRNLALEATFINHNFSQQVLK+G+ R++F+ NPFIS EEEEGEVAS
Sbjct: 304 EPPQDDGNSFNSPRNLALEATFINHNFSQQVLKTGEPRYNFEEKNPFIS--EEEEGEVAS 361
Query: 359 VAYKYRKWDLGEGIGLVARCEHDGVLASPNGDLQFLNIKALNEWDSKLSGGVEWRQKLDV 418
VAY+YRKWDL GI L+ARCEHD V+ PNGD+QFL IKALNEWDSKLSGGVEWRQKLD
Sbjct: 362 VAYRYRKWDLDNGIVLIARCEHDAVMQMPNGDIQFLTIKALNEWDSKLSGGVEWRQKLDT 421
Query: 419 QRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAE 478
QRGAVLANELRNN+CKLAKWTVQALLAGS QIKFGYVSRA VRD+++HVILGTQQYKP E
Sbjct: 422 QRGAVLANELRNNACKLAKWTVQALLAGSDQIKFGYVSRAHVRDSSKHVILGTQQYKPNE 481
Query: 479 FAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDIPDNTF 530
FA QINLNMDNAWGILRCIIDIC+KQK+GKYLIMKDPNKP+IRLYDIPDNTF
Sbjct: 482 FATQINLNMDNAWGILRCIIDICMKQKEGKYLIMKDPNKPMIRLYDIPDNTF 533
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Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722070|ref|XP_003399433.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Bombus terrestris] gi|350414810|ref|XP_003490425.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|237681128|ref|NP_001153709.1| eukaryotic initiation factor 3 p66 subunit [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|270011621|gb|EFA08069.1| hypothetical protein TcasGA2_TC005665 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|332019187|gb|EGI59697.1| Eukaryotic translation initiation factor 3 subunit D [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|328720748|ref|XP_003247118.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|383860221|ref|XP_003705589.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|307212308|gb|EFN88116.1| Eukaryotic translation initiation factor 3 subunit D [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|307182366|gb|EFN69629.1| Eukaryotic translation initiation factor 3 subunit D [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|322789376|gb|EFZ14688.1| hypothetical protein SINV_15552 [Solenopsis invicta] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| UNIPROTKB|B4K892 | 563 | eIF-3p66 "Eukaryotic translati | 0.946 | 0.918 | 0.663 | 2e-191 | |
| UNIPROTKB|B4JTN0 | 563 | eIF-3p66 "Eukaryotic translati | 0.946 | 0.918 | 0.659 | 6e-190 | |
| UNIPROTKB|B4LYI3 | 563 | eIF-3p66 "Eukaryotic translati | 0.946 | 0.918 | 0.659 | 6e-190 | |
| UNIPROTKB|B4PNV2 | 560 | eIF-3p66 "Eukaryotic translati | 0.937 | 0.914 | 0.655 | 9.8e-190 | |
| UNIPROTKB|B4NLG2 | 561 | eIF-3p66 "Eukaryotic translati | 0.946 | 0.921 | 0.650 | 2.6e-189 | |
| UNIPROTKB|B4R222 | 560 | eIF-3p66 "Eukaryotic translati | 0.937 | 0.914 | 0.653 | 3.3e-189 | |
| UNIPROTKB|B3P8G6 | 560 | eIF-3p66 "Eukaryotic translati | 0.937 | 0.914 | 0.653 | 4.3e-189 | |
| UNIPROTKB|B4HFV9 | 560 | eIF-3p66 "Eukaryotic translati | 0.937 | 0.914 | 0.653 | 4.3e-189 | |
| UNIPROTKB|B3LY71 | 561 | eIF-3p66 "Eukaryotic translati | 0.943 | 0.918 | 0.653 | 5.4e-189 | |
| FB|FBgn0040227 | 560 | eIF-3p66 "Eukaryotic initiatio | 0.937 | 0.914 | 0.653 | 8.8e-189 |
| UNIPROTKB|B4K892 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
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Score = 1855 (658.1 bits), Expect = 2.0e-191, P = 2.0e-191
Identities = 351/529 (66%), Positives = 413/529 (78%)
Query: 8 PHFPPPMIQDNVNGWGPCDMPQQFKDMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQS 67
P F P +Q N GWGPC++P FKD+PYQPFSK DRLGKI DWT + DKKY NKY S
Sbjct: 12 PSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTSTSNNDKKYQNKYAS 71
Query: 68 QFGSGSQYAYYHEEDESTFHLVDTTRIQKPPYQXXXXXXXXXXXXXX---AQAQFQLLGK 124
FG+G+QYAYYHEEDE+TFHLVDT R+QKPP+Q A+ G
Sbjct: 72 TFGTGNQYAYYHEEDETTFHLVDTARVQKPPHQRGRFRNMRNSRSGRGRNARGGLNTHGH 131
Query: 125 GFK-LRDRDRKGQSGAKRYGKTQNIRNNKNQAPIKNRDASVTVRSDWVTIEEMDFARFSK 183
G L ++ K + + GK R P K R++SV VR+DW +IEEMDF R K
Sbjct: 132 GMTTLNSKNVKARDPRRGVGK----RFGNRGPPPKMRESSVAVRADWASIEEMDFPRLMK 187
Query: 184 LSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSNERIFHTVTTTDDPIIRKLSKT 243
LSLPN+KE +D+ CG++E+YDK+YDR+N KNEKPL +RI HTVTTTDDP+IR+LSKT
Sbjct: 188 LSLPNIKEGEDITTCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKT 247
Query: 244 EGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSD 303
GNV+ATD ILAT+MC TRSNYSWDIVIEK+G+K+F DKRD+TEFDLLTVNETS +PP+D
Sbjct: 248 IGNVFATDAILATIMCSTRSNYSWDIVIEKVGEKIFMDKRDHTEFDLLTVNETSVEPPTD 307
Query: 304 EQTSINSPRNLALEATFINHNFSQQVLKSGD--ARHSFDNPNPFISXXXXXXXXVASVAY 361
+ +S NSPRNLA+EATFINHNFSQQVLK+GD A++ F+ PNPFIS VASV Y
Sbjct: 308 DDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEAKYKFEEPNPFISEDEDIQ--VASVGY 365
Query: 362 KYRKWDLGEGIGLVARCEHDGVLASPNGDLQFLNIKALNEWDSKLSGGVEWRQKLDVQRG 421
+Y+KW+LG I LVARCEHDGVL +P+G+ QFL+IKALNEWDSKL+ GVEWRQKLD QRG
Sbjct: 366 RYKKWELGSDIVLVARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRG 425
Query: 422 AVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEFAG 481
AVLANELRNN+CKLAKWTVQA+LAGS Q+K GYVSR RD +RHVILGTQQ+KP EFA
Sbjct: 426 AVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFAT 485
Query: 482 QINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDIPDNTF 530
QINL+MDNAWGILRCIID+ +KQKDGKYLIMKDPNKP+IRLYDIPDNTF
Sbjct: 486 QINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTF 534
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| UNIPROTKB|B4JTN0 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4LYI3 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4PNV2 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4NLG2 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4R222 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B3P8G6 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4HFV9 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B3LY71 eIF-3p66 "Eukaryotic translation initiation factor 3 subunit D-1" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
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| FB|FBgn0040227 eIF-3p66 "Eukaryotic initiation factor 3 p66 subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B3LZN3 | EI3D2_DROAN | No assigned EC number | 0.6065 | 0.9395 | 0.9344 | N/A | N/A |
| B4GP93 | EI3D1_DROPE | No assigned EC number | 0.6261 | 0.9065 | 0.9149 | N/A | N/A |
| B3P1F9 | EI3D2_DROER | No assigned EC number | 0.6109 | 0.9505 | 0.9419 | N/A | N/A |
| O94236 | EIF3D_SCHPO | No assigned EC number | 0.4138 | 0.9322 | 0.8977 | yes | N/A |
| Q4R8R4 | EIF3D_MACFA | No assigned EC number | 0.6146 | 0.9578 | 0.9543 | N/A | N/A |
| Q6P8G0 | EIF3D_XENTR | No assigned EC number | 0.6130 | 0.9578 | 0.9474 | yes | N/A |
| Q7ZTM9 | EIF3D_XENLA | No assigned EC number | 0.6168 | 0.9578 | 0.9509 | N/A | N/A |
| B4GFS1 | EI3D2_DROPE | No assigned EC number | 0.5793 | 0.9304 | 0.9321 | N/A | N/A |
| B4NLG2 | EI3D1_DROWI | No assigned EC number | 0.6709 | 0.9468 | 0.9215 | N/A | N/A |
| B3P8G6 | EI3D1_DROER | No assigned EC number | 0.6654 | 0.9505 | 0.9267 | N/A | N/A |
| B4JUM0 | EI3D2_DROGR | No assigned EC number | 0.5894 | 0.9487 | 0.9299 | N/A | N/A |
| P0CN48 | EIF3D_CRYNJ | No assigned EC number | 0.4311 | 0.9249 | 0.9232 | yes | N/A |
| O15371 | EIF3D_HUMAN | No assigned EC number | 0.6146 | 0.9578 | 0.9543 | yes | N/A |
| Q16UF8 | EIF3D_AEDAE | No assigned EC number | 0.7234 | 0.9432 | 0.8319 | N/A | N/A |
| B4QT07 | EI3D2_DROSI | No assigned EC number | 0.5926 | 0.9175 | 0.9092 | N/A | N/A |
| Q9VGC7 | EI3D2_DROME | No assigned EC number | 0.5974 | 0.9578 | 0.9491 | no | N/A |
| B4R222 | EI3D1_DROSI | No assigned EC number | 0.6654 | 0.9505 | 0.9267 | N/A | N/A |
| B4HHG8 | EI3D2_DROSE | No assigned EC number | 0.5875 | 0.9450 | 0.9381 | N/A | N/A |
| P30642 | EIF3D_CAEEL | No assigned EC number | 0.4542 | 0.9542 | 0.9140 | yes | N/A |
| Q295S1 | EI3D2_DROPS | No assigned EC number | 0.5764 | 0.9285 | 0.9302 | no | N/A |
| B3LY71 | EI3D1_DROAN | No assigned EC number | 0.6691 | 0.9468 | 0.9215 | N/A | N/A |
| Q9VCK0 | EI3D1_DROME | No assigned EC number | 0.6654 | 0.9505 | 0.9267 | yes | N/A |
| B4HFV9 | EI3D1_DROSE | No assigned EC number | 0.6654 | 0.9505 | 0.9267 | N/A | N/A |
| A5ABX6 | EIF3D_ASPNC | No assigned EC number | 0.4202 | 0.9029 | 0.8412 | yes | N/A |
| B4PNN4 | EI3D2_DROYA | No assigned EC number | 0.6094 | 0.9523 | 0.9437 | N/A | N/A |
| B5DY99 | EI3D1_DROPS | No assigned EC number | 0.6556 | 0.9468 | 0.9182 | yes | N/A |
| Q6AYK8 | EIF3D_RAT | No assigned EC number | 0.6127 | 0.9578 | 0.9543 | yes | N/A |
| Q5R925 | EIF3D_PONAB | No assigned EC number | 0.6127 | 0.9578 | 0.9543 | yes | N/A |
| Q3T122 | EIF3D_BOVIN | No assigned EC number | 0.6127 | 0.9578 | 0.9543 | yes | N/A |
| Q7QBW3 | EIF3D_ANOGA | No assigned EC number | 0.7110 | 0.9432 | 0.8818 | yes | N/A |
| B4LYI3 | EI3D1_DROVI | No assigned EC number | 0.6716 | 0.9597 | 0.9307 | N/A | N/A |
| P56820 | EIF3D_ARATH | No assigned EC number | 0.4159 | 0.9377 | 0.8663 | yes | N/A |
| B4JTN0 | EI3D1_DROGR | No assigned EC number | 0.6792 | 0.9487 | 0.9200 | N/A | N/A |
| Q6TH15 | EIF3D_DANRE | No assigned EC number | 0.6168 | 0.9578 | 0.9474 | yes | N/A |
| A7SMR1 | EIF3D_NEMVE | No assigned EC number | 0.5955 | 0.9468 | 0.9182 | N/A | N/A |
| Q4X054 | EIF3D_ASPFU | No assigned EC number | 0.4389 | 0.8992 | 0.8393 | yes | N/A |
| Q0ZB77 | EIF3D_BOMMO | No assigned EC number | 0.7166 | 0.9542 | 0.9489 | N/A | N/A |
| B4KDI2 | EI3D2_DROMO | No assigned EC number | 0.6003 | 0.9542 | 0.9404 | N/A | N/A |
| B4K892 | EI3D1_DROMO | No assigned EC number | 0.6753 | 0.9597 | 0.9307 | N/A | N/A |
| B4PNV2 | EI3D1_DROYA | No assigned EC number | 0.6672 | 0.9505 | 0.9267 | N/A | N/A |
| Q5AVZ0 | EIF3D_EMENI | No assigned EC number | 0.4237 | 0.9029 | 0.8412 | yes | N/A |
| B4M5A7 | EI3D2_DROVI | No assigned EC number | 0.6086 | 0.9597 | 0.9458 | N/A | N/A |
| B0X6P7 | EIF3D_CULQU | No assigned EC number | 0.7208 | 0.9468 | 0.8447 | N/A | N/A |
| O70194 | EIF3D_MOUSE | No assigned EC number | 0.6127 | 0.9578 | 0.9543 | yes | N/A |
| B4N8Z4 | EI3D2_DROWI | No assigned EC number | 0.5944 | 0.9194 | 0.9127 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| pfam05091 | 517 | pfam05091, eIF-3_zeta, Eukaryotic translation init | 0.0 |
| >gnl|CDD|218425 pfam05091, eIF-3_zeta, Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | Back alignment and domain information |
|---|
Score = 732 bits (1893), Expect = 0.0
Identities = 279/530 (52%), Positives = 361/530 (68%), Gaps = 35/530 (6%)
Query: 13 PMIQDNVNGWGPCDMPQQFK--DMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQSQFG 70
P + N +GWGP + P++ D+P+ PFSKGD+LGK++DWTG +Q +KY S G
Sbjct: 6 PELPVNEDGWGPPEEPEELDLDDVPFAPFSKGDKLGKVADWTGNTYQ-----DKYASGAG 60
Query: 71 SGSQ-YAYYHEEDESTFHLVDTTRIQKP-------PYQRGRNMRGRGGGRGGAQAQFQLL 122
GS +AY H EDES+F LVD K +RG+ R + G+G
Sbjct: 61 RGSSVFAYVHAEDESSFSLVDDRSRLKARTTKHGKRKRRGKQTRTQRRGQGPQG------ 114
Query: 123 GKGFKLRDRDRKGQSGAKRYGKTQNIRNNKNQAPIKNRDASVTVRSDWVTIEEMDFARFS 182
+G R R GQ KR+ + + R+ASV +R DW +EE+DF+R S
Sbjct: 115 KRGMTSRRAKRGGQRKQKRFQ--TGRGGRRGARHRRLREASVEIRPDWTVLEEIDFSRLS 172
Query: 183 KLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVS-NERIFHTVTTTDDPIIRKL- 240
KLSLP++ +D+ G++++YDKSYDR+N KNE+PL N+R F+ VTT+DDP+IR+L
Sbjct: 173 KLSLPSLPTGEDIDSYGTLKYYDKSYDRINVKNERPLQELNDREFYNVTTSDDPVIRELA 232
Query: 241 SKTEGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDP 300
KTEG V+ATD ILA LMC TRS YSWDIVI K+G+KLFFDKRD + DLLTVNET+ DP
Sbjct: 233 EKTEGTVFATDEILAALMCATRSVYSWDIVITKVGNKLFFDKRDGSNIDLLTVNETAADP 292
Query: 301 PSD-EQTSINSPRNLALEATFINHNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASV 359
P D ++ SINSP +LALEAT IN NF+QQVL D ++ FD NPF E+EE +AS
Sbjct: 293 PLDDDENSINSPSSLALEATKINQNFAQQVLLENDEKYQFDEENPFYDEDEE----LASK 348
Query: 360 AYKYRKWDLGEGIG----LVARCEHDGVLASPNGDLQFLNIKALNEWDSKLSGGVEWRQK 415
AY+YR++DL + L+ RCE D VL +G+ QF+ IKALNE+DSK G V+WR K
Sbjct: 349 AYRYRRFDLSDDTDDPVDLIVRCEVDAVLKGLSGEDQFVTIKALNEFDSKSQG-VDWRTK 407
Query: 416 LDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYK 475
L+ QRGAVLA EL+NNSCKLA+WT QALLAG+ Q+K G+VSRA RDA HVILGTQ YK
Sbjct: 408 LESQRGAVLATELKNNSCKLARWTAQALLAGADQMKLGFVSRANPRDAQNHVILGTQTYK 467
Query: 476 PAEFAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDI 525
P + A QINL M N WGI+R I+D+C+KQ DGKY+++KDPNKP+IRLY++
Sbjct: 468 PKDLAAQINLKMSNMWGIVRTIVDLCMKQPDGKYVLVKDPNKPVIRLYEV 517
|
This family is made up of eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 p66/eIF3d). Eukaryotic initiation factor 3 is a multi-subunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. These functions and the complex nature of eIF3 suggest multiple interactions with many components of the translational machinery. The gene coding for the protein has been implicated in cancer in mammals. Length = 517 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| KOG2479|consensus | 549 | 100.0 | ||
| PF05091 | 516 | eIF-3_zeta: Eukaryotic translation initiation fact | 100.0 | |
| PF10505 | 220 | NARG2_C: NMDA receptor-regulated gene protein 2 C- | 97.27 | |
| KOG1982|consensus | 359 | 94.64 | ||
| PF08652 | 69 | RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR | 88.17 |
| >KOG2479|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-208 Score=1591.37 Aligned_cols=520 Identities=64% Similarity=1.086 Sum_probs=470.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCccCCCCcccccccccccccccCCccccccchhhccccc-cCC--CCCccccccccc
Q psy6476 6 GLPHFPPPMIQDNVNGWGPCDMPQQFKDMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQS-QFG--SGSQYAYYHEED 82 (546)
Q Consensus 6 ~~~~f~lp~i~~n~~gWGP~~~~~~~~~iPyaPfsK~DklGkvaDWt~~~~~~~~~~~~y~~-~~g--~~~~f~y~~~ed 82 (546)
+|++|++|.|.+|++|||||+.|+.|.+||||||||+||||||||||..+.+++++.++|++ .|| ++++|+|+|+||
T Consensus 2 ~~~~Fe~p~v~~n~~gWGP~e~~~~~~dvPyqpFsK~DRLGkvaDWt~~~~~~kr~~~ky~s~~fg~g~gsq~~y~h~eD 81 (549)
T KOG2479|consen 2 VFPKFELPTVAFNESGWGPPEVSDTFPDVPYQPFSKSDRLGKVADWTGASNPDKRYNNKYASDTFGEGAGSQYSYFHEED 81 (549)
T ss_pred CcccccccccccCCCCCCCCccccccCCCCCccccccccccchhccccCCCccccccccccchhhccCcccccccccccc
Confidence 57899999999999999999999999999999999999999999999988888899999998 676 799999999999
Q ss_pred CCCcEEeeCCCCCCCC-CCCCC---CCCC-----CCCCCCCcchhhhhcccccccccccccCCccccccCCCCCccCCCC
Q psy6476 83 ESTFHLVDTTRIQKPP-YQRGR---NMRG-----RGGGRGGAQAQFQLLGKGFKLRDRDRKGQSGAKRYGKTQNIRNNKN 153 (546)
Q Consensus 83 E~sF~lVD~~~~~k~~-~~r~r---~~r~-----~r~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~r~g~r~~~~ 153 (546)
|++|||||++...+++ ++|+| .+|+ +|++|++...++..+..+ +.+.++.++. ++.+|+|+| .
T Consensus 82 essF~lVDt~~~~~~~~~~~~r~r~~~r~~~~~~~r~~rg~~~~~~~~~~ak-~~~~~r~r~~--~~~~g~rfg-----~ 153 (549)
T KOG2479|consen 82 ESSFQLVDTKPRARKPFYQRGRFRQNHRRNRRPKGRDGRGGTNGGAKKRSAK-QTRARRDRLY--GRNRGRRFG-----R 153 (549)
T ss_pred ccceeeecCCCCCCCCccccccccHHhhhccccccccccccccccccccccc-ccccccchhc--ccccccccc-----C
Confidence 9999999995555555 55665 2222 222232221111111111 1111111112 444566655 4
Q ss_pred CCCCCccCCceeeCCCceEEEeeeccccccccCCCCCCCcceeeeccccccccccccccCCCCccccccCccccccCCCC
Q psy6476 154 QAPIKNRDASVTVRSDWVTIEEMDFARFSKLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSNERIFHTVTTTD 233 (546)
Q Consensus 154 ~~~~~~r~~SV~v~~dW~~~eEi~f~~L~Kl~l~~v~~~eDi~~~G~l~~Ydk~~Dri~~k~~~~L~~~~~~~~~~tTsd 233 (546)
+++++.|++||.|++||++||||||++|+||+|++|++|+||.+||.|+||||+||||++|+++|||+++|+||+|||||
T Consensus 154 ~~~~k~r~sSV~V~~dW~~lEEm~fs~lsKL~l~ni~~p~di~~cG~Le~YDKsfDRI~vk~ekpLq~~~rv~~~vTTTd 233 (549)
T KOG2479|consen 154 GKPQKARESSVDVRPDWVVLEEMDFSRLSKLSLPNISEPVDILTCGGLEYYDKSFDRITVKNEKPLQRIDRVFHTVTTTD 233 (549)
T ss_pred CCccccccCccccccchhhhhccchhhhhhhcccCCCCCceeeeecceeecccccccccccccchHHHhhceeeccccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc-CCcEeehHHHHHHHhhcCCccccceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChh
Q psy6476 234 DPIIRKLSKT-EGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPR 312 (546)
Q Consensus 234 DPvi~~la~~-~~~VfaTD~ILa~LM~a~RSvYsWDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~ 312 (546)
|||||+||++ +|||||||+|||+|||||||||||||||+|+|+|||||||++++||+|||||||.|||+|++++||||+
T Consensus 234 DpVIrrLak~~~gnVFaTDaILatlMc~tRSvYsWDiVi~rvg~KlFfDKRd~~pfDlLTV~Ets~Epp~d~~n~iNs~~ 313 (549)
T KOG2479|consen 234 DPVIRRLAKETKGNVFATDAILATLMCATRSVYSWDIVIQRVGDKLFFDKRDGSPFDLLTVNETSVEPPMDDDNSINSAH 313 (549)
T ss_pred CHHHHHHhhccCCceeeHHHHHHHHhccCcccccceeEEEEccceEEEeccCCCcceeEEeccccCCCCcccCCCcCChh
Confidence 9999999996 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeCCCCCc
Q psy6476 313 NLALEATFINHNFSQQVLKSGDA-RHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLASPNGDL 391 (546)
Q Consensus 313 ~L~~EAT~IN~nF~~Qvl~~~~~-~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~~~~~~ 391 (546)
+|++|||||||||+||||+.+++ +++|++||||.+++ ++.||+|||||+|+|+++|.||||||||||+++++++.
T Consensus 314 ~La~EAtyINqNF~qQvlr~~~~er~~f~~pnPf~~e~----~~~As~aYrYR~w~Lg~~v~Lv~RcE~dgvv~g~~ne~ 389 (549)
T KOG2479|consen 314 SLAVEATYINQNFSQQVLRRGDEEKYTFPEPNPFEEEG----EELASVAYRYRRWKLGDDVVLVARCELDGVVQGPNNEV 389 (549)
T ss_pred hhhhhhhhhhhhhHHHHHhhCCcceeeCCCCCCccCcC----ccccceeeEEeeecCCCCeEEEEEecccceecCCCCCc
Confidence 99999999999999999998854 89999999994443 46899999999999999999999999999999999999
Q ss_pred ceEEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEe
Q psy6476 392 QFLNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGT 471 (546)
Q Consensus 392 ~~~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~ 471 (546)
|||+||||||||||.++++|||+|||+||||||||||||||||||||||||||||+|+||||||||.||||+++||||||
T Consensus 390 qfltIkAlNEwDsk~sngVdWRqKLdtQRGAVlAtElkNNs~KlAkWT~qAlLAgsD~mKlGyVSR~n~Rd~~~HvILgt 469 (549)
T KOG2479|consen 390 QFLTIKALNEWDSKYSNGVDWRQKLDTQRGAVLATELKNNSCKLAKWTVQALLAGSDQMKLGYVSRVNPRDHQNHVILGT 469 (549)
T ss_pred eEEEhhhhccccccccCcccHHHhhhhhcchhhhhhhhcchhHHHHHHHHHHHcCCcceeeeeeeccCcccccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchhhhhhhcccccCchhhHHHHHHHHHhCCCccEEEEecCCCCeEEEEeCCCCCCCCCCCcC
Q psy6476 472 QQYKPAEFAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDIPDNTFDSDNEEN 537 (546)
Q Consensus 472 q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~~dGkYvl~KDPnK~~irlY~vp~d~fe~~~e~~ 537 (546)
|+|||.|||+||||||+|||||||||||+||||+|||||||||||||+||||+||++|||+|++++
T Consensus 470 q~~KP~efAsqinLnmdN~WGIlRciiDlcMK~~dGKYll~KDPnkpiiRlYsvP~~tF~sd~~~~ 535 (549)
T KOG2479|consen 470 QQYKPKEFASQINLNMDNAWGILRCIIDLCMKQPDGKYLLVKDPNKPIIRLYSVPPNTFESDYGEP 535 (549)
T ss_pred eccChHHHHhhhcccccchhhhHHHHHHHHhcCCCCcEEEEeCCCCceEEEeeCCCCccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999984333
|
|
| >PF05091 eIF-3_zeta: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); InterPro: IPR007783 This family is made up of eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 p66/eIF3d) | Back alignment and domain information |
|---|
| >PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+ | Back alignment and domain information |
|---|
| >KOG1982|consensus | Back alignment and domain information |
|---|
| >PF08652 RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR013961 RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 3fqi_A | 417 | Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein | 97.88 | |
| 4gps_A | 423 | KLLA0E02245P; decapping, 5'-3' exoribonuclease, HY | 97.72 | |
| 3fqg_A | 360 | Protein DIN1; hydrolase, mRNA processing, nucleus, | 97.43 |
| >3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00039 Score=73.85 Aligned_cols=229 Identities=16% Similarity=0.272 Sum_probs=140.9
Q ss_pred CCcEeehHHHHHHHhhcCCcc-ccceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChhhhhHHHHHHH
Q psy6476 244 EGNVYATDTILATLMCCTRSN-YSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPRNLALEATFIN 322 (546)
Q Consensus 244 ~~~VfaTD~ILa~LM~a~RSv-YsWDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~~L~~EAT~IN 322 (546)
.+.|+++=-+|-.|||++-.. -+|.|.|++.+|.|||.+.+.. .... +. . +...+..+.+|-=
T Consensus 145 ~aDfVT~Rg~L~kIm~tpye~~~~~~i~v~~~~GtIyl~~~~~~-----------~~~~-~~---~-~~~~~~~~~~y~G 208 (417)
T 3fqi_A 145 AGATVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETP-----------AARA-QR---L-ARPPLLRELMYMG 208 (417)
T ss_dssp GGCEEEEHHHHHHHHHGGGCCSCCEEEEEEEETTEEEEEEECCH-----------HHHH-HH---H-TCCHHHHHHHHHH
T ss_pred cceEEcchHHHHHHHhCcccCCCCeEEEEEEECCEEEEEecCch-----------hhhh-cc---c-cCChhHHHHHHHH
Confidence 457999999999999998654 4799999999999999763210 0000 00 0 0112445556666
Q ss_pred HHHHHHHhhcCCccccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeCCC---CCcceEEEEee
Q psy6476 323 HNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLASPN---GDLQFLNIKAL 399 (546)
Q Consensus 323 ~nF~~Qvl~~~~~~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~~~---~~~~~~~i~AL 399 (546)
..|-+-++... .. +.++|- +. ......=|-=-+-.|++ +.|+..+||||+-..+. +-..||-+|+-
T Consensus 209 yKFE~~~T~~~--p~--~~~~~~----~~--Vn~~~qf~sVvrt~lg~-~~ll~~gEVDaid~~~~~~~~~~~yVELKTs 277 (417)
T 3fqi_A 209 YKFEQYMCADK--PG--GSPDPS----GE--VNTNVAYCSVLRSRLGN-HPLLFSGEVDCLNPQAPCTQPPSCYVELKTS 277 (417)
T ss_dssp HHHHHHHEESS--TT--CCCCTT----SC--EETTCEEEEEEEEEETT-EEEEEEEECCEECTTCSSCSTTTTEEEEEEE
T ss_pred HHHHHhhhcCC--CC--CCcCcc----cc--ccCCceEEEEEEeeeCC-eeEEEeeeeccccCCCcCCCCCceeEEEEEE
Confidence 67877665432 11 112221 00 00010011223344665 89999999999942211 11479999997
Q ss_pred ccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEeeecCchhh
Q psy6476 400 NEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEF 479 (546)
Q Consensus 400 NE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~q~~kp~~f 479 (546)
-+.... .+|+.- +-+||.||=+||.|+|+..|=+||-.+ +.+|..++.|++.++
T Consensus 278 ~~~~~~----~~~~~f---------------~r~Kllk~W~QSFL~GVp~IivGfRD~-------~g~l~~ie~~~t~eI 331 (417)
T 3fqi_A 278 KEMHSP----GQWRSF---------------YRHKLLKWWAQSFLPGVPHVVAGFRNP-------EGFVCSLKTFPTMEM 331 (417)
T ss_dssp ECCCSH----HHHHHH---------------HHHHHHHHHHHHHTTTCCEEEEEEECT-------TSEEEEEEEEEGGGG
T ss_pred ecccCh----hhhhhh---------------hHHHHHHHHHHHhhcCCCEEEEEEECC-------CCcEEEEEEEEhhhh
Confidence 765322 244421 236999999999999999999999532 468889999999998
Q ss_pred hhhhcccccCchhhHHHH------H---HHHHhCC--CccEEEEecCCCCeEEEEeCCCC
Q psy6476 480 AGQINLNMDNAWGILRCI------I---DICLKQK--DGKYLIMKDPNKPLIRLYDIPDN 528 (546)
Q Consensus 480 A~Qi~L~~~N~WGIvr~i------i---d~~~k~~--dGkYvl~KDPnK~~irlY~vp~d 528 (546)
...+.- -.+.|-.--|+ + ..+++.+ .--|+|-=||++. ..|++.++
T Consensus 332 p~l~k~-~~~~W~~~vc~~f~~~~L~~Ik~~v~~Dd~~~vy~~~~~~~~~--v~y~~~~~ 388 (417)
T 3fqi_A 332 FENVRN-DREGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGP--VTVSVHRD 388 (417)
T ss_dssp GGGTTT-CTTCCCHHHHHHHHHHHHHHHHHHCCSBCTTEEEEEEECTTSC--BEEEEEES
T ss_pred hhhhhh-ccCCCCHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEcCCCc--EEEEecCC
Confidence 866542 24557544332 2 2223322 2557877899985 35887554
|
| >4gps_A KLLA0E02245P; decapping, 5'-3' exoribonuclease, HYDR; HET: CIT; 2.40A {Kluyveromyces lactis} PDB: 4gpu_A | Back alignment and structure |
|---|
| >3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00