Psyllid ID: psy6499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTNR
Secondary Structure (PSIPRED)
cEEEEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccccccccccHHHHHHHHHEcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccc
Coil and Loop (DISEMBL)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYlkdsytnr
Flexible Loop (DISEMBL)
mfvgvvvenfhrcreeqekEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHiylkdsytnr
Low Complexity Region (SEG)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTNR
Disordered region (IsUnstruct)
**VGVVVENFHRCREE*EKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKD*****
Disordered Region (DISOPRED)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTN*
Disordered Region (DISEMBL)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTNR
Disordered Region (DISPRO)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSY***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFVGVVVENFHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
O54898	2254	Voltage-dependent T-type	yes	N/A	0.970	0.043	0.417	3e-22
O43497	2377	Voltage-dependent T-type	no	N/A	0.970	0.041	0.393	7e-21
Q9P0X4	2223	Voltage-dependent T-type	no	N/A	0.970	0.044	0.440	9e-21
Q9Z0Y8	2201	Voltage-dependent T-type	no	N/A	0.970	0.044	0.440	1e-20
Q9EQ60	2359	Voltage-dependent T-type	no	N/A	0.970	0.041	0.425	9e-19
O88427	2365	Voltage-dependent T-type	no	N/A	0.970	0.041	0.406	1e-18
O95180	2353	Voltage-dependent T-type	no	N/A	0.970	0.041	0.398	3e-18
P27884	2424	Voltage-dependent P/Q-typ	no	N/A	0.831	0.034	0.364	6e-11
P54282	2212	Voltage-dependent P/Q-typ	no	N/A	0.831	0.037	0.341	3e-10
P97445	2368	Voltage-dependent P/Q-typ	no	N/A	0.831	0.035	0.341	3e-10

>sp|O54898|CAC1G_RAT Voltage-dependent T-type calcium channel subunit alpha-1G OS=Rattus norvegicus GN=Cacna1g PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/134 (41%), Positives = 69/134 (51%), Gaps = 36/134 (26%)

Query: 1    MFVGVVVENFHRCREEQ-----------------------EKE-------------ERWR 24
            MFVGVVVENFH+CR+ Q                       EK+              R+R
Sbjct: 1510 MFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKKRRSKEKQMAEAQCKPYYSDYSRFR 1569

Query: 25   LLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMK 84
            LL+H + TS Y DL I  VIGLNV+TMAME Y  P  L  ALKI NY FT +F+ E   K
Sbjct: 1570 LLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVIFVFESVFK 1629

Query: 85   LLALGLHIYLKDSY 98
            L+A G   + +D +
Sbjct: 1630 LVAFGFRRFFQDRW 1643

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1G gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.
Rattus norvegicus (taxid: 10116)

>sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo sapiens GN=CACNA1G PE=2 SV=3

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 70/145 (48%), Gaps = 47/145 (32%)

Query: 1    MFVGVVVENFHRCREEQEKE---------------------------------------- 20
            MFVGVVVENFH+CR+ QE+E                                        
Sbjct: 1531 MFVGVVVENFHKCRQHQEEEEARRREEKRLRRLEKKRRNLMLDDVIASGSSASAASEAQC 1590

Query: 21   -------ERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFF 73
                    R+RLL+H + TS Y DL I  VIGLNV+TMAME Y  P  L  ALKI NY F
Sbjct: 1591 KPYYSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIF 1650

Query: 74   TAVFILECFMKLLALGLHIYLKDSY 98
            T +F+LE   KL+A G   + +D +
Sbjct: 1651 TVIFVLESVFKLVAFGFRRFFQDRW 1675

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1G gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by mibefradil. A particularity of this type of channels is an opening at quite negative potentials and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Homo sapiens (taxid: 9606)

>sp|Q9P0X4|CAC1I_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1I OS=Homo sapiens GN=CACNA1I PE=1 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEE-----------------------------RWRLLIHSVV 31
            MFVGVVVENFH+CR+ QE EE                               RLLIHS+ 
Sbjct: 1425 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPYYATYCHTRLLIHSMC 1484

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +KL+A GL 
Sbjct: 1485 TSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLR 1544

Query: 92   IYLKDSY 98
             + KD +
Sbjct: 1545 RFFKDRW 1551

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Isoform alpha-1I gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes. Gates in voltage ranges similar to, but higher than alpha 1G or alpha 1H.

Homo sapiens (taxid: 9606)

>sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel subunit alpha-1I OS=Rattus norvegicus GN=Cacna1i PE=2 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEERW-----------------------------RLLIHSVV 31
            MFVGVVVENFH+CR+ QE EE                               RLLIHS+ 
Sbjct: 1384 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPYYATYCPTRLLIHSMC 1443

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +KL+A GL 
Sbjct: 1444 TSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLR 1503

Query: 92   IYLKDSY 98
             + KD +
Sbjct: 1504 RFFKDRW 1510

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Isoform alpha-1I gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes. Gates in voltage ranges similar to, but higher than alpha 1G or alpha 1H.

Rattus norvegicus (taxid: 10116)

>sp|Q9EQ60|CAC1H_RAT Voltage-dependent T-type calcium channel subunit alpha-1H OS=Rattus norvegicus GN=Cacna1h PE=2 SV=2

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 65/127 (51%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKE-----------------------------ERWRLLIHSVV 31
            MFVGVVVENFH+CR+ QE E                                R  IHS+ 
Sbjct: 1560 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRKAQRRPYYADYSHTRRSIHSLC 1619

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TS Y DL I  +I LNVITM+ME Y  P +L  ALK  NY FT VF+ E  +KL+A G  
Sbjct: 1620 TSHYLDLFITFIICLNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFR 1679

Query: 92   IYLKDSY 98
             + KD +
Sbjct: 1680 RFFKDRW 1686

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Rattus norvegicus (taxid: 10116)

>sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel subunit alpha-1H OS=Mus musculus GN=Cacna1h PE=2 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 66/133 (49%), Gaps = 35/133 (26%)

Query: 1    MFVGVVVENFHRCREEQ---------------------------EKEER--------WRL 25
            MFVGVVVENFH+CR+ Q                           E + R         R 
Sbjct: 1560 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRSTFPNPEAQRRPYYADYSHTRR 1619

Query: 26   LIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKL 85
             IHS+ TS Y DL I  +I LNVITM+ME Y  P +L  ALK  NY FT VF+ E  +KL
Sbjct: 1620 SIHSLCTSHYLDLFITFIICLNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKL 1679

Query: 86   LALGLHIYLKDSY 98
            +A G   + KD +
Sbjct: 1680 VAFGFRRFFKDRW 1692

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Mus musculus (taxid: 10090)

>sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 66/133 (49%), Gaps = 35/133 (26%)

Query: 1    MFVGVVVENFHRCREEQ---------------------------EKEER--------WRL 25
            MFVGVVVENFH+CR+ Q                           E + R         R 
Sbjct: 1549 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRSTFPSPEAQRRPYYADYSPTRR 1608

Query: 26   LIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKL 85
             IHS+ TS Y DL I  +I +NVITM+ME Y  P +L  ALK  NY FT VF+ E  +KL
Sbjct: 1609 SIHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKL 1668

Query: 86   LALGLHIYLKDSY 98
            +A G   + KD +
Sbjct: 1669 VAFGFRRFFKDRW 1681

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Homo sapiens (taxid: 9606)

>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 51/85 (60%)

Query: 14   REEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFF 73
            R   + ++ ++  +   V S  F+  I A+I LN I + M+FY   +A   ALK+FN  F
Sbjct: 1555 RHMPQNKQSFQYRMWQFVVSPPFEYTIMAMIALNTIVLMMKFYGASVAYDNALKVFNIVF 1614

Query: 74   TAVFILECFMKLLALGLHIYLKDSY 98
            T++F LEC +K+LA G+  Y +D++
Sbjct: 1615 TSLFSLECLLKVLAFGILNYFRDAW 1639

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q-type calcium currents. P/Q-type calcium channels belong to the 'high-voltage activated' (HVA) group and are blocked by the funnel toxin (Ftx) and by the omega-agatoxin-IVA (omega-Aga-IVA). They are however insensitive to dihydropyridines (DHP), and omega-conotoxin-GVIA (omega-CTx-GVIA).

Oryctolagus cuniculus (taxid: 9986)

>sp|P54282|CAC1A_RAT Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Rattus norvegicus GN=Cacna1a PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 51/85 (60%)

Query: 14   REEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFF 73
            R   + ++ ++  +   V S  F+  I A+I LN I + M+FY   +A   AL++FN  F
Sbjct: 1497 RHMPQNKQSFQYRMWQFVVSPPFEYTIMAMIALNTIVLMMKFYGASVAYENALRVFNIVF 1556

Query: 74   TAVFILECFMKLLALGLHIYLKDSY 98
            T++F LEC +K++A G+  Y +D++
Sbjct: 1557 TSLFSLECVLKVMAFGILNYFRDAW 1581

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q-type calcium currents. P/Q-type calcium channels belong to the 'high-voltage activated' (HVA) group and are blocked by the funnel toxin (Ftx) and by the omega-agatoxin-IVA (omega-Aga-IVA). They are however insensitive to dihydropyridines (DHP), and omega-conotoxin-GVIA (omega-CTx-GVIA).

Rattus norvegicus (taxid: 10116)

>sp|P97445|CAC1A_MOUSE Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Mus musculus GN=Cacna1a PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 51/85 (60%)

Query: 14   REEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFF 73
            R   + ++ ++  +   V S  F+  I A+I LN I + M+FY   +A   AL++FN  F
Sbjct: 1497 RHMPQNKQSFQYRMWQFVVSPPFEYTIMAMIALNTIVLMMKFYGASVAYENALRVFNIVF 1556

Query: 74   TAVFILECFMKLLALGLHIYLKDSY 98
            T++F LEC +K++A G+  Y +D++
Sbjct: 1557 TSLFSLECVLKVMAFGILNYFRDAW 1581

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q-type calcium currents. P/Q-type calcium channels belong to the 'high-voltage activated' (HVA) group and are blocked by the funnel toxin (Ftx) and by the omega-agatoxin-IVA (omega-Aga-IVA). They are however insensitive to dihydropyridines (DHP), and omega-conotoxin-GVIA (omega-CTx-GVIA).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
350406872	2574	PREDICTED: LOW QUALITY PROTEIN: voltage-	0.970	0.038	0.685	9e-42
340720941	2274	PREDICTED: voltage-dependent T-type calc	0.970	0.043	0.685	9e-42
328712331	2186	PREDICTED: voltage-dependent T-type calc	0.970	0.044	0.677	7e-41
307166119	2356	Voltage-dependent T-type calcium channel	0.970	0.041	0.669	2e-40
242017362	2449	voltage- gated calcium channel, putative	0.970	0.040	0.669	3e-40
307213880	2606	Voltage-dependent T-type calcium channel	0.970	0.037	0.669	4e-40
332020605	2328	Voltage-dependent T-type calcium channel	0.970	0.042	0.661	7e-40
322797982	1559	hypothetical protein SINV_00065 [Solenop	0.970	0.062	0.653	2e-39
170068272	1285	voltage-dependent T-type calcium channel	0.970	0.076	0.645	4e-39
347967981	2632	AGAP002505-PA [Anopheles gambiae str. PE	0.970	0.037	0.645	7e-39

>gi|350406872|ref|XP_003487910.1| PREDICTED: LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G-like [Bombus impatiens]

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 87/127 (68%), Positives = 93/127 (73%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 1774 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTNYSKSRLFVHNVV 1833

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE FMKL+ALGLH
Sbjct: 1834 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESFMKLVALGLH 1893

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1894 LYLKDKW 1900

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720941|ref|XP_003398887.1| PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H-like [Bombus terrestris]

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 87/127 (68%), Positives = 93/127 (73%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 1650 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTNYSKSRLFVHNVV 1709

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE FMKL+ALGLH
Sbjct: 1710 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESFMKLVALGLH 1769

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1770 LYLKDKW 1776

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712331|ref|XP_003244782.1| PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H-like [Acyrthosiphon pisum]

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/127 (67%), Positives = 93/127 (73%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RLL+HSVV
Sbjct: 1564 MFVGVVVENFHRCREEQEKEERVRRLAKRAKQMEKKRRKMHEPPYYRDYSNARLLVHSVV 1623

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMA+EFYMMP ALTYALKIFNYFFTAVFILEC MK+LALGL 
Sbjct: 1624 TSKYFDLAIAAVIGLNVVTMALEFYMMPKALTYALKIFNYFFTAVFILECVMKMLALGLQ 1683

Query: 92   IYLKDSY 98
            +Y+KD +
Sbjct: 1684 LYVKDKW 1690

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166119|gb|EFN60368.1| Voltage-dependent T-type calcium channel subunit alpha-1H [Camponotus floridanus]

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/127 (66%), Positives = 92/127 (72%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 1641 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTTYSKARLFVHNVV 1700

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE FMKL+ALG+ 
Sbjct: 1701 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESFMKLVALGVQ 1760

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1761 LYLKDKW 1767

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017362|ref|XP_002429158.1| voltage- gated calcium channel, putative [Pediculus humanus corporis] gi|212514036|gb|EEB16420.1| voltage- gated calcium channel, putative [Pediculus humanus corporis]

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/127 (66%), Positives = 92/127 (72%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEERW-----------------------------RLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL+IH+VV
Sbjct: 1556 MFVGVVVENFHRCREEQEKEERMIRLAKRAKQMEKKRRKMHEPPYYTNYSKPRLVIHNVV 1615

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP  LTYALKIFNYFFTAVFILE FMKL+ALG+ 
Sbjct: 1616 TSKYFDLAIAAVIGLNVVTMAMEFYMMPRPLTYALKIFNYFFTAVFILELFMKLIALGIK 1675

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1676 LYLKDKW 1682

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213880|gb|EFN89141.1| Voltage-dependent T-type calcium channel subunit alpha-1H [Harpegnathos saltator]

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 85/127 (66%), Positives = 91/127 (71%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 1744 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTNYSKSRLFVHNVV 1803

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE  MKL+ALGL 
Sbjct: 1804 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESLMKLVALGLQ 1863

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1864 LYLKDKW 1870

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020605|gb|EGI61013.1| Voltage-dependent T-type calcium channel subunit alpha-1G [Acromyrmex echinatior]

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 84/127 (66%), Positives = 91/127 (71%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 1514 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTHYSKARLFVHNVV 1573

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE  MKL+ALG+ 
Sbjct: 1574 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESLMKLVALGIQ 1633

Query: 92   IYLKDSY 98
            +YLKD +
Sbjct: 1634 LYLKDKW 1640

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797982|gb|EFZ19826.1| hypothetical protein SINV_00065 [Solenopsis invicta]

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/127 (65%), Positives = 91/127 (71%), Gaps = 29/127 (22%)

Query: 1   MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
           MFVGVVVENFHRCREEQEKEER                              RL +H+VV
Sbjct: 736 MFVGVVVENFHRCREEQEKEERVRRAAKRALQMEKKRRKMHEPPYYTSYSKARLFVHNVV 795

Query: 32  TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
           TSKYFDLAIAAVIGLNV+TMAMEFYMMP ALTYALKIFNYFFTAVFILE  MKL+ALG+ 
Sbjct: 796 TSKYFDLAIAAVIGLNVVTMAMEFYMMPKALTYALKIFNYFFTAVFILESIMKLVALGVQ 855

Query: 92  IYLKDSY 98
           +Y+KD +
Sbjct: 856 LYMKDKW 862

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068272|ref|XP_001868802.1| voltage-dependent T-type calcium channel subunit alpha-1G [Culex quinquefasciatus] gi|167864341|gb|EDS27724.1| voltage-dependent T-type calcium channel subunit alpha-1G [Culex quinquefasciatus]

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/127 (64%), Positives = 91/127 (71%), Gaps = 29/127 (22%)

Query: 1   MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
           MFVGVVVENFHRCREEQEKEE+                              RL +H+VV
Sbjct: 760 MFVGVVVENFHRCREEQEKEEKIRRAAKRALQMEKKRRRMHEPPYYTNYSPLRLFVHNVV 819

Query: 32  TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
           TSKYFDLAIAAVIGLNV+TMAME+YMMP+AL YALKIFNYFFTAVFILE  MKL+ALGL 
Sbjct: 820 TSKYFDLAIAAVIGLNVVTMAMEYYMMPLALEYALKIFNYFFTAVFILEAIMKLVALGLK 879

Query: 92  IYLKDSY 98
           IY+KD +
Sbjct: 880 IYMKDKW 886

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967981|ref|XP_312434.5| AGAP002505-PA [Anopheles gambiae str. PEST] gi|333468216|gb|EAA08229.6| AGAP002505-PA [Anopheles gambiae str. PEST]

 Score =  164 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/127 (64%), Positives = 91/127 (71%), Gaps = 29/127 (22%)

Query: 1    MFVGVVVENFHRCREEQEKEER-----------------------------WRLLIHSVV 31
            MFVGVVVENFHRCREEQEKEE+                              RL +H+VV
Sbjct: 1889 MFVGVVVENFHRCREEQEKEEKIRRAAKRALQMEKKRKRMHEPPYYTNYSPMRLFVHNVV 1948

Query: 32   TSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLH 91
            TSKYFDLAIAAVIGLNV+TMAME+YMMP+AL YALKIFNYFFTAVFILE  MKLLALG+ 
Sbjct: 1949 TSKYFDLAIAAVIGLNVVTMAMEYYMMPLALEYALKIFNYFFTAVFILEAAMKLLALGVK 2008

Query: 92   IYLKDSY 98
            IY+KD +
Sbjct: 2009 IYMKDRW 2015

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0264386	3205	Ca-alpha1T "Ca[2+]-channel pro	0.742	0.023	0.76	1.1e-32
WB|WBGene00000367	1885	cca-1 [Caenorhabditis elegans	0.762	0.040	0.679	1.5e-27
UNIPROTKB|F1NF70	2135	F1NF70 "Uncharacterized protei	0.742	0.035	0.533	2.5e-21
UNIPROTKB|F1SR99	1737	CACNA1I "Uncharacterized prote	0.742	0.043	0.52	5.3e-21
UNIPROTKB|G3N034	1774	G3N034 "Uncharacterized protei	0.742	0.042	0.52	5.5e-21
UNIPROTKB|G3N292	1793	G3N292 "Uncharacterized protei	0.742	0.041	0.52	5.7e-21
UNIPROTKB|G3MWH6	1818	G3MWH6 "Uncharacterized protei	0.742	0.041	0.52	5.9e-21
UNIPROTKB|E2R9S8	1829	CACNA1I "Uncharacterized prote	0.742	0.041	0.52	5.9e-21
UNIPROTKB|E9PST9	1834	Cacna1i "Voltage-dependent T-t	0.742	0.040	0.52	6e-21
UNIPROTKB|F8WDE5	2188	CACNA1I "Voltage-dependent T-t	0.742	0.034	0.52	8.9e-21

FB|FBgn0264386 Ca-alpha1T "Ca[2+]-channel protein alpha[[1]] subunit T" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
 Identities = 57/75 (76%), Positives = 65/75 (86%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             R+ +H+VVTSKYFDLAIAAVIGLNV+TMAME+Y MP  L YALKIFNYFFTAVFILE  M
Sbjct:  2470 RMFVHNVVTSKYFDLAIAAVIGLNVVTMAMEYYKMPSGLKYALKIFNYFFTAVFILEANM 2529

Query:    84 KLLALGLHIYLKDSY 98
             KL+ALG  +YLKD +
Sbjct:  2530 KLVALGWKLYLKDRW 2544

GO:0008332 "low voltage-gated calcium channel activity" evidence=ISS;IMP;NAS

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA;NAS

GO:0005262 "calcium channel activity" evidence=NAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

WB|WBGene00000367 cca-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 264 (98.0 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
 Identities = 53/78 (67%), Positives = 61/78 (78%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RL +H +VTSKYFDLAIAAVIG+NVI+MAMEFYMMPM L Y LK  NYFFTAVF LE  M
Sbjct:  1479 RLFLHGIVTSKYFDLAIAAVIGINVISMAMEFYMMPMGLKYVLKALNYFFTAVFTLEAAM 1538

Query:    84 KLLALGLHIYLKDSYTNR 101
             KL+ALG   +  + + NR
Sbjct:  1539 KLIALGFKRFFIEKW-NR 1555

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0045760 "positive regulation of action potential" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0008332 "low voltage-gated calcium channel activity" evidence=ISS

UNIPROTKB|F1NF70 F1NF70 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 40/75 (53%), Positives = 52/75 (69%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHSV TS Y D+ I  +I LNV+TM++E Y  P++L  ALK  NY FT VF+LE  +
Sbjct:  1372 RLLIHSVCTSHYLDIFITFIICLNVVTMSLEHYNQPVSLETALKYCNYLFTTVFVLEAVL 1431

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1432 KLVAFGLRRFFKDRW 1446

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F1SR99 CACNA1I "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1445 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1504

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1505 KLVAFGLRRFFKDRW 1519

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|G3N034 G3N034 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1472 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1531

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1532 KLVAFGLRRFFKDRW 1546

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|G3N292 G3N292 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1504 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1563

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1564 KLVAFGLRRFFKDRW 1578

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|G3MWH6 G3MWH6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1527 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1586

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1587 KLVAFGLRRFFKDRW 1601

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|E2R9S8 CACNA1I "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1537 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1596

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1597 KLVAFGLRRFFKDRW 1611

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|E9PST9 Cacna1i "Voltage-dependent T-type calcium channel subunit alpha-1I" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1438 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1497

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1498 KLVAFGLRRFFKDRW 1512

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F8WDE5 CACNA1I "Voltage-dependent T-type calcium channel subunit alpha-1I" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
             RLLIHS+ TS Y D+ I  +I LNV+TM++E Y  P +L  ALK  NY FT VF+LE  +
Sbjct:  1442 RLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVL 1501

Query:    84 KLLALGLHIYLKDSY 98
             KL+A GL  + KD +
Sbjct:  1502 KLVAFGLRRFFKDRW 1516

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
COG3696	1027	COG3696, COG3696, Putative silver efflux pump [Ino	0.002

>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 5   VVVENFHRCREE--QEKEERWRLLIHSVV---TSKYFDLAIAAVIGLNVITM-AMEFYMM 58
           VVVEN HR  EE       R+ ++  +        +F L I  V+ L + T+  +E  + 
Sbjct: 407 VVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTLTGVEGKLF 466

Query: 59  -PMALTYALKIFNYFFTAV 76
            P+A T    +      ++
Sbjct: 467 APLAFTKTYALLAALLLSI 485

Length = 1027

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG2301|consensus	1592		99.82
KOG2302|consensus	1956		99.75
KOG2301|consensus	1592		99.49
KOG2302|consensus	1956		99.41
KOG1419|consensus	654		96.97
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.74
KOG3713|consensus	477		96.11
PF06512	239	Na_trans_assoc: Sodium ion transport-associated; I	96.09

>KOG2301|consensus

Probab=99.82  E-value=5.7e-20  Score=141.47  Aligned_cols=100  Identities=35%  Similarity=0.596  Sum_probs=92.7

Q ss_pred             CEEEEEccccccchH---------HHHH--------------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q psy6499           1 MFVGVVVENFHRCRE---------EQEK--------------------EERWRLLIHSVVTSKYFDLAIAAVIGLNVITM   51 (101)
Q Consensus         1 lFigvii~~f~~~~~---------~~~~--------------------~~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l   51 (101)
                      +|+||||+||+|+++         +|++                    .++++.++++++.++.|++.++.++++|++.|
T Consensus      1095 lFvgvII~nf~~q~~~~~~~~~~~eq~~~~~~~~~l~sk~~~r~ipr~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l 1174 (1592)
T KOG2301|consen 1095 LFVGVIIDNFNQQKGKAGGTFMTEEQKKRLNAAKKLGSKPPQRPIPRPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIM 1174 (1592)
T ss_pred             eeEEEEEechhhhchhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCCCCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            699999999999993         2222                    25689999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCC
Q psy6499          52 AMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTN  100 (101)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~wN~  100 (101)
                      ++++++++..+...+..+|.+|+.+|++|+++|++|++++.||+++||+
T Consensus      1175 ~~~~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~ 1223 (1592)
T KOG2301|consen 1175 MVETYDQSDTYTAILTILNAVFIVLFTIECILKVIALRFRGYFTSAWNV 1223 (1592)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccchh
Confidence            9999999999999999999999999999999999999999999999996

>KOG2302|consensus

Probab=99.75  E-value=1.9e-19  Score=132.83  Aligned_cols=100  Identities=53%  Similarity=0.794  Sum_probs=92.6

Q ss_pred             CEEEEEccccccchHHHHH-----------------------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q psy6499           1 MFVGVVVENFHRCREEQEK-----------------------------EERWRLLIHSVVTSKYFDLAIAAVIGLNVITM   51 (101)
Q Consensus         1 lFigvii~~f~~~~~~~~~-----------------------------~~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l   51 (101)
                      ||+||+++||.|.++.|+.                             ..+.|+.++....+++.+.+++++|++|.+.|
T Consensus      1379 mfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~kpyyseyt~~rrlIh~~ctShyld~fit~ii~LnvVtm 1458 (1956)
T KOG2302|consen 1379 MFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQRKPYYSEYTMTRRLIHSKCTSHYLDQFITFIICLNVVTM 1458 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            5899999999999965432                             13568899999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCC
Q psy6499          52 AMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYTN  100 (101)
Q Consensus        52 ~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~wN~  100 (101)
                      ++++|.+|..++..+.++|+.|+.+|+.|+++|++|+|.++||+|.|||
T Consensus      1459 s~ehyqqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnq 1507 (1956)
T KOG2302|consen 1459 SEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQ 1507 (1956)
T ss_pred             HHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhh
Confidence            9999999999999999999999999999999999999999999999997

>KOG2301|consensus

Probab=99.49  E-value=3.6e-14  Score=110.10  Aligned_cols=82  Identities=30%  Similarity=0.455  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCC
Q psy6499          19 KEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSY   98 (101)
Q Consensus        19 ~~~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~w   98 (101)
                      .|.+++++++.++.++.+..++.+++++|++.++++|++++......+++++.+|+++|+.|+.+|++|+||+.||+.+|
T Consensus       428 ~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~~~~~~~~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~  507 (1592)
T KOG2301|consen  428 IWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYEMTKARNYLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGW  507 (1592)
T ss_pred             HHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy6499          99 TN  100 (101)
Q Consensus        99 N~  100 (101)
                      |+
T Consensus       508 n~  509 (1592)
T KOG2301|consen  508 NI  509 (1592)
T ss_pred             ch
Confidence            96

>KOG2302|consensus

Probab=99.41  E-value=5.8e-13  Score=99.32  Aligned_cols=82  Identities=35%  Similarity=0.480  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCC
Q psy6499          20 EERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYT   99 (101)
Q Consensus        20 ~~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~wN   99 (101)
                      |.-.+.+.+.|+.|++|+..|+..|++|++.|++|++.+|+.+.+.+++.|.+|+..|..|+.+|..+.|+.+|.++++|
T Consensus       607 wr~~~~klr~ivdskyf~rgimmailvntlsmgieyheqpeeltnalei~n~vftsmfalEm~lkla~~g~f~y~rnPyn  686 (1956)
T KOG2302|consen  607 WRETRAKLRGIVDSKYFNRGIMMAILVNTLSMGIEYHEQPEELTNALEIDNNVFTSMFALEMDLKLAARGFFRYHRNPYN  686 (1956)
T ss_pred             HHHHHHHHHhhhhhhhcccchhhHHHhhhhhhccccccChHHHhhHHHhhhhhhHHHHHHHHHHhhhhccchhccCCCcc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy6499         100 NR  101 (101)
Q Consensus       100 ~~  101 (101)
                      .+
T Consensus       687 if  688 (1956)
T KOG2302|consen  687 IF  688 (1956)
T ss_pred             cC
Confidence            74

>KOG1419|consensus

Probab=96.97  E-value=0.014  Score=42.62  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhcCc----hHH-HHHHHHHHHHHHHHhh-hcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q psy6499          20 EERWRLLIHSVVTSK----YFD-LAIAAVIGLNVITMAM-EFYMMPM-ALTYALKIFNYFFTAVFILECFMKLLALGLH   91 (101)
Q Consensus        20 ~~~~~~~~~~iv~~~----~f~-~~i~~~i~ln~i~l~~-~~~~~~~-~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~   91 (101)
                      ..+.+.++|+..+.|    .|- ++..+++++-++.++. .+.++.+ .....+.+.+++...+|..|.++++++.|-+
T Consensus        74 ~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~  152 (654)
T KOG1419|consen   74 YRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCC  152 (654)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            567778899888776    222 2333444445555544 4444433 4457899999999999999999999999864

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.74  E-value=0.0011  Score=41.09  Aligned_cols=32  Identities=31%  Similarity=0.750  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCc--ccccccCCC
Q psy6499          68 IFNYFFTAVFILECFMKLLALGL--HIYLKDSYT   99 (101)
Q Consensus        68 ~~~~~f~~if~~E~~lk~~a~g~--~~y~~~~wN   99 (101)
                      +.+.++..+|++|.++|+.+.|+  +.|+++.||
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~   34 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWN   34 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhh
Confidence            46788999999999999999998  799999998

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3713|consensus

Probab=96.11  E-value=0.035  Score=39.91  Aligned_cols=79  Identities=11%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHhhhcCCCC--HH----------------HHHHHHHHHHHHHH
Q psy6499          21 ERWRLLIHSVVTSKY-------FDLAIAAVIGLNVITMAMEFYMMP--MA----------------LTYALKIFNYFFTA   75 (101)
Q Consensus        21 ~~~~~~~~~iv~~~~-------f~~~i~~~i~ln~i~l~~~~~~~~--~~----------------~~~~l~~~~~~f~~   75 (101)
                      +++|+.++++++.|.       |.....+.+++.++.|++.+.|.-  ..                -+..+.+.+.++.+
T Consensus       172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~  251 (477)
T KOG3713|consen  172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA  251 (477)
T ss_pred             hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence            568889999987764       555566778888899988876541  11                12358999999999


Q ss_pred             HHHHHHHHHHHHhCc-ccccccCCC
Q psy6499          76 VFILECFMKLLALGL-HIYLKDSYT   99 (101)
Q Consensus        76 if~~E~~lk~~a~g~-~~y~~~~wN   99 (101)
                      .|++|.+++++...- ..|+++.-|
T Consensus       252 WFT~E~llR~~~~P~k~~F~k~pLN  276 (477)
T KOG3713|consen  252 WFTFEYLLRFLVAPNKLEFFKSPLN  276 (477)
T ss_pred             HHHHHHHHHHHcCchHHHHHhCcch
Confidence            999999999986532 357776655

>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated

Probab=96.09  E-value=0.001  Score=43.57  Aligned_cols=27  Identities=22%  Similarity=0.175  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHH
Q psy6499          18 EKEERWRLLIHSVVTSKYFDLAIAAVI   44 (101)
Q Consensus        18 ~~~~~~~~~~~~iv~~~~f~~~i~~~i   44 (101)
                      +.|..+|+.|++||.|+||+.+|+++|
T Consensus       213 ~~W~~~R~~c~~iVeh~~FEtfIifmI  239 (239)
T PF06512_consen  213 KIWWNLRKTCYRIVEHKWFETFIIFMI  239 (239)
T ss_pred             hhHHHHHhhheeeecccchhheeeeeC
Confidence            458899999999999999999998765

Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	2e-15
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	2e-15

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 67.7 bits (166), Expect = 2e-15
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
               S+  ++ F   + ++I LN + +    Y +       + + +Y  T  F++E  +
Sbjct: 2  TPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILI 61

Query: 84 KLLALGLHI-YLKDSY 98
          + +       + K  +
Sbjct: 62 RFIGEKQKADFFKSGW 77

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 19 KEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFY-MMPMALTYALKIFNYFFTAVF 77
          +     L I ++V S +F   I  +I LN ITM +E       +      +FN     +F
Sbjct: 15 RGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIF 74

Query: 78 ILECFMKLLALGLHIYLKDSY 98
           +E  +++    +  + KD +
Sbjct: 75 TIEIILRIYVHRIS-FFKDPW 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.55
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.49
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	99.27
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.99
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	98.89
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	98.4
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.38
1qg9_A	26	Protein (sodium channel protein, brain II alpha su	97.51
2kav_A	129	Sodium channel protein type 2 subunit alpha; volta	84.83

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.55  E-value=2.5e-15  Score=96.33  Aligned_cols=75  Identities=15%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccccCCCC
Q psy6499          26 LIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALG-LHIYLKDSYTN  100 (101)
Q Consensus        26 ~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g-~~~y~~~~wN~  100 (101)
                      .++++++|++|+.+++++|++|++.+++++++++++....++..|.+++++|++|+++|+++.| ++.|++++||.
T Consensus         4 ~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni   79 (229)
T 4dxw_A            4 FFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNI   79 (229)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHHHSTTTCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHH
Confidence            5788999999999999999999999999999999999999999999999999999999999996 57899999984

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.49  E-value=4e-14  Score=93.34  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCC
Q psy6499          21 ERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYM-MPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYT   99 (101)
Q Consensus        21 ~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~-~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~wN   99 (101)
                      +.+|+.+++++++++|+.++++++++|++.+++++++ .+.+....+..++.+++++|++|+++|+++.| ..|++++||
T Consensus        17 ~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~~-~~y~~~~wn   95 (285)
T 3rvy_A           17 SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHR-ISFFKDPWS   95 (285)
T ss_dssp             --CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGGGCHHH
T ss_pred             hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHcCChH
Confidence            4589999999999999999999999999999999987 45667789999999999999999999999999 679999998


Q ss_pred             C
Q psy6499         100 N  100 (101)
Q Consensus       100 ~  100 (101)
                      .
T Consensus        96 ~   96 (285)
T 3rvy_A           96 L   96 (285)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=99.27  E-value=1.4e-11  Score=73.09  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             HhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccccCCCC
Q psy6499          30 VVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALG-LHIYLKDSYTN  100 (101)
Q Consensus        30 iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g-~~~y~~~~wN~  100 (101)
                      +++++.|+.+++++|++|++.+++|+.++ +.+....+...|.+++++|++|+++|+++.+ +..|++  ||.
T Consensus         2 ~v~~~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~--~ni   72 (132)
T 1ors_C            2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK--KTL   72 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTT--TCG
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHH
Confidence            57899999999999999999999999875 4567788999999999999999999999864 567888  874

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.99  E-value=1.1e-10  Score=82.58  Aligned_cols=81  Identities=11%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhcC-------chHHHHHHHHHHHHHHHHhhhcCCCC---------------------------HHHHHH
Q psy6499          20 EERWRLLIHSVVTS-------KYFDLAIAAVIGLNVITMAMEFYMMP---------------------------MALTYA   65 (101)
Q Consensus        20 ~~~~~~~~~~iv~~-------~~f~~~i~~~i~ln~i~l~~~~~~~~---------------------------~~~~~~   65 (101)
                      ++++|+.++.++++       +.|+.+++++|++|++.+++++.++.                           ......
T Consensus       161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2r9r_B          161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP  240 (514)
T ss_dssp             SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence            35688999999987       48999999999999999999987541                           113456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCC
Q psy6499          66 LKIFNYFFTAVFILECFMKLLALGLH-IYLKDSYTN  100 (101)
Q Consensus        66 l~~~~~~f~~if~~E~~lk~~a~g~~-~y~~~~wN~  100 (101)
                      +.+++.+++++|++|+++|+++.+.+ .|+++.||.
T Consensus       241 l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wni  276 (514)
T 2r9r_B          241 FFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNI  276 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHH
Confidence            88899999999999999999999864 899999984

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=98.89  E-value=1.2e-08  Score=61.45  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccccCC
Q psy6499          21 ERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKDSY   98 (101)
Q Consensus        21 ~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~~w   98 (101)
                      +++++.++++++++.|+..+.+++++|.+.+++++.+. +.+....+..+|.+++++|++|.++++++..- ..|++++|
T Consensus         8 ~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~~~~i   87 (147)
T 2kyh_A            8 GGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTL   87 (147)
T ss_dssp             SHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHST
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence            35788899999999999999999999999999998764 55667788999999999999999999998763 57888754

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=98.40  E-value=5.5e-08  Score=61.81  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             HHHhcCchHHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cccccc
Q psy6499          28 HSVVTSKYFDLAIAAVIGLNVITMAMEFYM-MPMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKD   96 (101)
Q Consensus        28 ~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~-~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~   96 (101)
                      +++++++.|+.++++++++|++.+++++.+ .+++....+...|.++.++|++|+++|+.+.+. .+|+++
T Consensus         2 ~~~~~~~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y~~~   72 (223)
T 1orq_C            2 GDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK   72 (223)
T ss_dssp             TTTCCSHHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHhCchHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            468899999999999999999999998754 344566778899999999999999999998653 356654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.38  E-value=3.6e-07  Score=61.55  Aligned_cols=69  Identities=10%  Similarity=-0.013  Sum_probs=56.6

Q ss_pred             hcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCC
Q psy6499          31 VTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGLH-IYLKDSYT   99 (101)
Q Consensus        31 v~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~-~y~~~~wN   99 (101)
                      ..|+.|+.+++++|++|++.+++++.++ +.+....++.++.++..+|++|+.+|+.+.+.+ .|++++||
T Consensus         5 p~s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~~~~~~~~~   75 (355)
T 3beh_A            5 PFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKI   75 (355)
T ss_dssp             --CCSSSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSSCCCHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccccccceeccCcch
Confidence            3577899999999999999999999886 566667788888888889999999999876543 47778776

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A

Probab=84.83  E-value=0.21  Score=29.17  Aligned_cols=14  Identities=21%  Similarity=0.095  Sum_probs=6.2

Q ss_pred             CEEEEEccccccch
Q psy6499           1 MFVGVVVENFHRCR   14 (101)
Q Consensus         1 lFigvii~~f~~~~   14 (101)
                      |||+||+|||....
T Consensus        17 LfIAVIlenF~~~~   30 (129)
T 2kav_A           17 RGSHMASENFSVAT   30 (129)
T ss_dssp             -------CCSCCTT
T ss_pred             eeeeeeeccHHHHH
Confidence            79999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1orsc_	132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	1e-04

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 30 VVTSKYFDLAIAAVIGLNVITMAME-FYMMPMALTYALKIFNYFFTAVFILECFMKLLAL 88
          V+     +L ++    L+VI + +E    +       L + +     +   +   +    
Sbjct: 2  VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 61

Query: 89 G 89
          G
Sbjct: 62 G 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.39

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.39  E-value=5.3e-13  Score=77.93  Aligned_cols=69  Identities=16%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             HhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccccCC
Q psy6499          30 VVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKDSY   98 (101)
Q Consensus        30 iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~~w   98 (101)
                      +++||.|+..+++++++|++.+++|++++ +++....++..|.+++++|++|+++|+++.+- ..|++++|
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~~~~~~~~~~   72 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTL   72 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCG
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccceeCCcch
Confidence            57899999999999999999999999776 77888999999999999999999999998873 34444444