Psyllid ID: psy6519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MYLLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccEEEEEEEEccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccccEEccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHcccccccccEEEEEEcccccccEHHEEEEcccEEEEEEEccccccccHHHEEcccccccccccccHHHEcccEEEEccccccccccccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
myllgrplgvykvhrlipdEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKegggtdpntnyrlASTIDyckkssmpmttIENAIKscnvpeniygylelsclpwkptlSIARLVSLEGSACLVSAmsrvrfppsanfisnrlglflecsepitRMKQASVLLATALAhnvfpvpggpnrrtplggsiprltnfsg
Flexible Loop (DISEMBL)
myllgrplgvyKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVkegggtdpntnyrlASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVfpvpggpnrrtplggsiprltnfsg
Low Complexity Region (SEG)
MYLLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG
Disordered region (IsUnstruct)
**LLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEG*****NTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPV**********************
Disordered Region (DISOPRED)
*******LGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNF**
Disordered Region (DISEMBL)
MYLLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG
Disordered Region (DISPRO)
MYLLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
B2A5L8	250	Probable transcriptional	yes	N/A	0.682	0.568	0.325	1e-14
B2RYT9	295	Translational activator o	yes	N/A	0.355	0.250	0.466	3e-14
A8F5Z3	253	Probable transcriptional	yes	N/A	0.336	0.276	0.507	1e-13
Q8K0Z7	294	Translational activator o	yes	N/A	0.341	0.241	0.458	4e-13
A1K2Y6	241	Probable transcriptional	yes	N/A	0.336	0.290	0.535	4e-13
Q8RIE0	249	Probable transcriptional	yes	N/A	0.490	0.409	0.371	5e-13
A7NH92	255	Probable transcriptional	yes	N/A	0.341	0.278	0.422	6e-13
A5V1E4	255	Probable transcriptional	yes	N/A	0.336	0.274	0.428	7e-13
B7IHX7	252	Probable transcriptional	yes	N/A	0.336	0.277	0.478	7e-13
C5CGU7	252	Probable transcriptional	yes	N/A	0.336	0.277	0.478	9e-13

>sp|B2A5L8|Y1800_NATTJ Probable transcriptional regulatory protein Nther_1800 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=Nther_1800 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 30/172 (17%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+H KA  D+++  LF+ LSK++ +A KEGGG DP  N+RL   +   K+++
Sbjct: 2   AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGG-DPEKNFRLRMAVQKAKENN 60

Query: 88  MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAM-------- 139
           MP   IE AIK        + Y E+S   + P           G A  + AM        
Sbjct: 61  MPNDNIERAIKKGTGELKGFNYEEISYEGYGPG----------GVAIFLDAMTDNKNRTA 110

Query: 140 SRVRFPPSAN-----------FISNRLGLFLECSEPITRMKQASVLLATALA 180
           S VR   + N           ++ +R GL     E    + +  ++L TA A
Sbjct: 111 SEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEA 162

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

>sp|B2RYT9|TACO1_RAT Translational activator of cytochrome c oxidase 1 OS=Rattus norvegicus GN=Taco1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 25  VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCK 84
           V +AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVKE GG +P  N  LA+ ++ C+
Sbjct: 52  VAFAGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKE-GGPNPENNSSLANILEVCR 110

Query: 85  KSSMPMTTIENAIKS 99
             +MP +TIE+A+KS
Sbjct: 111 SKNMPKSTIESALKS 125

Acts as a translational activator of mitochondrially-encoded cytochrome c oxidase 1.

Rattus norvegicus (taxid: 10116)

>sp|A8F5Z3|Y1011_THELT Probable transcriptional regulatory protein Tlet_1011 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=Tlet_1011 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          +GH+KW NI+H K A+D +K+ LFT L ++L +A +EGGG DP TN RL + I+  K+++
Sbjct: 2  SGHNKWANIKHRKMAQDAKKSQLFTKLIRELIVAAREGGG-DPETNSRLRTAIEKAKEAN 60

Query: 88 MPMTTIENAIK 98
          MP   IE AIK
Sbjct: 61 MPRENIEKAIK 71

Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) (taxid: 416591)

>sp|Q8K0Z7|TACO1_MOUSE Translational activator of cytochrome c oxidase 1 OS=Mus musculus GN=Taco1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVKE GG +P  N  LA+ ++ C+  +
Sbjct: 55  AGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKE-GGPNPENNSSLANILELCRSKN 113

Query: 88  MPMTTIENAIKS 99
           MP +TIE+A+K+
Sbjct: 114 MPKSTIESALKT 125

Acts as a translational activator of mitochondrially-encoded cytochrome c oxidase 1.

Mus musculus (taxid: 10090)

>sp|A1K2Y6|Y574_AZOSB Probable transcriptional regulatory protein azo0574 OS=Azoarcus sp. (strain BH72) GN=azo0574 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW NI+H K  +D ++  +FT L K++ +A K GGG DPN N RL   ID  K  S
Sbjct: 2  AGHSKWANIQHRKGRQDAKRGKVFTKLIKEVTVAAKMGGG-DPNANPRLRLAIDKAKAES 60

Query: 88 MPMTTIENAIK 98
          MP   IENAIK
Sbjct: 61 MPKDNIENAIK 71

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|Q8RIE0|Y1661_FUSNN Probable transcriptional regulatory protein FN1661 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=FN1661 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 11/113 (9%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           +GHSKW NI+H K A+D+++A LFT   ++L +A KEGGG DPN N RL   I+  K  +
Sbjct: 2   SGHSKWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGG-DPNFNPRLRLAIEKAKAGN 60

Query: 88  MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMS 140
           MP   +E AIK  +       + E+    + P           G+A +V A++
Sbjct: 61  MPKDILERAIKKGSGELEGVDFTEMRYEGYGPA----------GTAFIVEAVT 103

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

>sp|A7NH92|Y718_ROSCS Probable transcriptional regulatory protein Rcas_0718 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=Rcas_0718 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          +GHSKW +IR  K   DQ +  LFT L++ + +A +EGG  DP  N+RL   +D  + ++
Sbjct: 2  SGHSKWHSIRRTKGVLDQRRGQLFTKLARDITIATREGGSGDPEANFRLRLAVDKARAAN 61

Query: 88 MPMTTIENAIK 98
          MPM  I+ AI 
Sbjct: 62 MPMDNIQRAID 72

Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)

>sp|A5V1E4|Y4362_ROSS1 Probable transcriptional regulatory protein RoseRS_4362 OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_4362 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          +GHSKW +IR  K+  DQ +  LFT L++ + +A +EGG  DP  N+RL   +D  + ++
Sbjct: 2  SGHSKWHSIRRTKSVLDQRRGQLFTKLARDITIATREGGSGDPEANFRLRLAVDKARAAN 61

Query: 88 MPMTTIENAI 97
          MPM  I+ AI
Sbjct: 62 MPMENIQRAI 71

Roseiflexus sp. (strain RS-1) (taxid: 357808)

>sp|B7IHX7|Y1246_THEAB Probable transcriptional regulatory protein THA_1246 OS=Thermosipho africanus (strain TCF52B) GN=THA_1246 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          +GH+KW NI+H KAA+D +K+ +FT L +++ +A KEGGG DP TN RL + ++  + ++
Sbjct: 2  SGHNKWANIKHRKAAQDAKKSKIFTKLIREIIVAAKEGGG-DPETNPRLRAVLERARAAN 60

Query: 88 MPMTTIENAIK 98
          MP  TIE +IK
Sbjct: 61 MPKDTIEKSIK 71

Thermosipho africanus (strain TCF52B) (taxid: 484019)

>sp|C5CGU7|Y1935_KOSOT Probable transcriptional regulatory protein Kole_1935 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=Kole_1935 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          +GH+KW NI+H K A+D +K+ +FT + ++L +A +E GGTDPNTN  L + I+  K ++
Sbjct: 2  SGHNKWANIKHRKMAQDAKKSKIFTKIIRELMVAARE-GGTDPNTNNALRAAIERAKAAN 60

Query: 88 MPMTTIENAIK 98
          MP  T+E AIK
Sbjct: 61 MPKDTMEKAIK 71

Kosmotoga olearia (strain TBF 19.5.1) (taxid: 521045)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
91085333	264	PREDICTED: similar to AGAP001629-PA [Tri	0.375	0.295	0.5	2e-16
332375753	259	unknown [Dendroctonus ponderosae]	0.389	0.312	0.456	1e-15
241896991	276	translational activator of cytochrome c	0.370	0.278	0.506	3e-15
345486334	262	PREDICTED: translational activator of cy	0.350	0.278	0.506	8e-15
195385084	244	GJ14855 [Drosophila virilis] gi|19414769	0.350	0.299	0.547	8e-15
195118664	244	GI18134 [Drosophila mojavensis] gi|19391	0.355	0.303	0.540	1e-14
195050356	245	GH13516 [Drosophila grimshawi] gi|193899	0.350	0.297	0.534	3e-14
307193215	183	Coiled-coil domain-containing protein 44	0.384	0.437	0.437	2e-13
188586415	250	hypothetical protein Nther_1800 [Natrana	0.682	0.568	0.325	7e-13
242023839	273	conserved hypothetical protein [Pediculu	0.341	0.260	0.520	7e-13

>gi|91085333|ref|XP_970254.1| PREDICTED: similar to AGAP001629-PA [Tribolium castaneum] gi|270008427|gb|EFA04875.1| hypothetical protein TcasGA2_TC014933 [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%)

Query: 24  LVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYC 83
           + R AGHSKWQNIRHIK AKD  ++ LFT LS+++K+AV+EGG  D   N +L + I+  
Sbjct: 23  IYRLAGHSKWQNIRHIKGAKDAARSLLFTKLSRQMKVAVQEGGSADITKNSKLENVIEQA 82

Query: 84  KKSSMPMTTIENAIKSCN 101
           K+++MP  TI++ ++SC 
Sbjct: 83  KRANMPTATIQSVLRSCE 100

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375753|gb|AEE63017.1| unknown [Dendroctonus ponderosae]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%)

Query: 26  RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
           R+AGHSKW NIRH+K  KD ++  LF  LS+++K+AV EGG   P  N +L   ID CK+
Sbjct: 13  RFAGHSKWANIRHVKGTKDAQRGLLFGKLSRQIKVAVTEGGSIGPTKNPKLKQIIDQCKR 72

Query: 86  SSMPMTTIENAIKSCNVPENI 106
            +MP  T+++ +KSC+  + +
Sbjct: 73  FNMPSATMQSVLKSCSADKTV 93

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241896991|ref|NP_001155952.1| translational activator of cytochrome c oxidase 1 [Acyrthosiphon pisum] gi|239793049|dbj|BAH72788.1| ACYPI008169 [Acyrthosiphon pisum]

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query: 23  LLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDY 82
           L  R AGH+KW NI+HIK A DQ+K+ +F   S+++KLA++E   ++P TN +LAS I+ 
Sbjct: 31  LFKRNAGHNKWSNIKHIKGANDQQKSLMFARFSRQMKLAIREQNDSNPETNSKLASIIEM 90

Query: 83  CKKSSMPMTTIENAIKS 99
            KK+SMP  TI N IK+
Sbjct: 91  AKKNSMPKDTILNTIKT 107

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486334|ref|XP_003425452.1| PREDICTED: translational activator of cytochrome c oxidase 1-like [Nasonia vitripennis]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 52/73 (71%)

Query: 26 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
          R+AGH+KW NIRHIK A+D E+A+    L KK+K+A+ EG    P+ N +LA  ID  KK
Sbjct: 22 RFAGHNKWSNIRHIKMARDSERASALQTLIKKMKIAIAEGKSAKPDENVKLARLIDQAKK 81

Query: 86 SSMPMTTIENAIK 98
          +S+PM TI+N ++
Sbjct: 82 NSLPMATIKNLLE 94

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385084|ref|XP_002051238.1| GJ14855 [Drosophila virilis] gi|194147695|gb|EDW63393.1| GJ14855 [Drosophila virilis]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+HIKA KD  +A LFT ++++L+LAV+EG   DP  N  L S ID   K +
Sbjct: 2   AGHSKWANIKHIKAQKDGLRAALFTKIARQLRLAVQEGKSADPAVNSLLRSEIDNALKKN 61

Query: 88  MPMTTIENAIKSC 100
           MP+ TI+N IK C
Sbjct: 62  MPIGTIQNTIKKC 74

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118664|ref|XP_002003856.1| GI18134 [Drosophila mojavensis] gi|193914431|gb|EDW13298.1| GI18134 [Drosophila mojavensis]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 50/74 (67%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+HIKA KD  +A LF  ++++L+LAV+EG   DP  N  L S ID   K +
Sbjct: 2   AGHSKWANIKHIKAQKDGLRAALFEKIARQLRLAVQEGKSADPAVNSLLRSEIDNALKRN 61

Query: 88  MPMTTIENAIKSCN 101
           MPM TI+N IK C 
Sbjct: 62  MPMGTIQNTIKKCQ 75

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195050356|ref|XP_001992876.1| GH13516 [Drosophila grimshawi] gi|193899935|gb|EDV98801.1| GH13516 [Drosophila grimshawi]

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 51/73 (69%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+HIKA KD  +A LFT ++++++LAV+EG   DP  N  L S ID   K +
Sbjct: 2   AGHSKWANIKHIKAQKDGLRAALFTKIARQIRLAVQEGKSGDPAVNSLLRSEIDNALKKN 61

Query: 88  MPMTTIENAIKSC 100
           MP+ TI+N IK C
Sbjct: 62  MPIGTIQNTIKKC 74

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193215|gb|EFN76106.1| Coiled-coil domain-containing protein 44 [Harpegnathos saltator]

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 56/80 (70%)

Query: 26  RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
           R+ GHSKW NIRHIKA KD E+  LF +L  ++K+A++E G T P+ N +LA  I+  KK
Sbjct: 7   RFKGHSKWDNIRHIKAEKDYERMLLFKSLKLQMKVAIQEHGSTKPDNNLKLAQVIENAKK 66

Query: 86  SSMPMTTIENAIKSCNVPEN 105
           ++MP+++I++ ++     +N
Sbjct: 67  ANMPISSIKSFLEKMEATKN 86

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|188586415|ref|YP_001917960.1| hypothetical protein Nther_1800 [Natranaerobius thermophilus JW/NM-WN-LF] gi|226695972|sp|B2A5L8.1|Y1800_NATTJ RecName: Full=Probable transcriptional regulatory protein Nther_1800 gi|179351102|gb|ACB85372.1| protein of unknown function DUF28 [Natranaerobius thermophilus JW/NM-WN-LF]

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 30/172 (17%)

Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+H KA  D+++  LF+ LSK++ +A KEGGG DP  N+RL   +   K+++
Sbjct: 2   AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGG-DPEKNFRLRMAVQKAKENN 60

Query: 88  MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAM-------- 139
           MP   IE AIK        + Y E+S   + P           G A  + AM        
Sbjct: 61  MPNDNIERAIKKGTGELKGFNYEEISYEGYGPG----------GVAIFLDAMTDNKNRTA 110

Query: 140 SRVRFPPSAN-----------FISNRLGLFLECSEPITRMKQASVLLATALA 180
           S VR   + N           ++ +R GL     E    + +  ++L TA A
Sbjct: 111 SEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEA 162

Source: Natranaerobius thermophilus JW/NM-WN-LF

Species: Natranaerobius thermophilus

Genus: Natranaerobius

Family: Natranaerobiaceae

Order: Natranaerobiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|242023839|ref|XP_002432338.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517761|gb|EEB19600.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 2/73 (2%)

Query: 26  RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
           R+AGHSKW NI+H+K AKDQ +A+LF  LS K+ LA KE  G +P TN +L + +   K+
Sbjct: 33  RWAGHSKWSNIKHVKMAKDQARASLFNKLSYKISLAAKE--GENPETNSKLKAALAEAKQ 90

Query: 86  SSMPMTTIENAIK 98
           ++MP  TI+ AIK
Sbjct: 91  ANMPNATIQGAIK 103

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
RGD|1306784	295	Taco1 "translational activator	0.355	0.250	0.466	6e-16
UNIPROTKB|F1RRW7	294	TACO1 "Uncharacterized protein	0.5	0.353	0.416	5.9e-15
MGI|MGI:1917457	294	Taco1 "translational activator	0.341	0.241	0.458	5.9e-15
UNIPROTKB|E1BJK7	297	TACO1 "Uncharacterized protein	0.336	0.235	0.492	8.3e-15
CGD|CAF0006898	204	orf19.442 [Candida albicans (t	0.245	0.25	0.705	6.2e-14
UNIPROTKB|Q5A299	204	CaO19.442 "Putative uncharacte	0.245	0.25	0.705	6.2e-14
UNIPROTKB|Q9BSH4	297	TACO1 "Translational activator	0.336	0.235	0.464	7.5e-14
UNIPROTKB|E2RFJ8	298	TACO1 "Uncharacterized protein	0.495	0.345	0.392	1e-13
UNIPROTKB|P62036	247	GSU1074 "Probable transcriptio	0.336	0.283	0.478	5.6e-13
TIGR_CMR|GSU_1074	247	GSU_1074 "conserved hypothetic	0.336	0.283	0.478	5.6e-13

RGD|1306784 Taco1 "translational activator of mitochondrially encoded cytochrome c oxidase I" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 35/75 (46%), Positives = 54/75 (72%)

Query:    25 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCK 84
             V +AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVKEGG  +P  N  LA+ ++ C+
Sbjct:    52 VAFAGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKEGG-PNPENNSSLANILEVCR 110

Query:    85 KSSMPMTTIENAIKS 99
               +MP +TIE+A+KS
Sbjct:   111 SKNMPKSTIESALKS 125

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|F1RRW7 TACO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.9e-15, P = 5.9e-15
 Identities = 45/108 (41%), Positives = 65/108 (60%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             AGH+KW  +RHIK  KD E++ +F+ LS  ++LAVKEGG  +P+ N  LAS ++ C+   
Sbjct:    55 AGHNKWSKVRHIKGPKDTERSRIFSKLSLSIRLAVKEGG-PNPDLNSNLASILEVCRSKH 113

Query:    88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACL 135
             MP +T+E A+K     ++I+   E    P   +L I  L S  GS CL
Sbjct:   114 MPKSTMEAALKM-EKTKDIHLLYE-GRGPGGSSLLIEAL-SNSGSKCL 158

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1917457 Taco1 "translational activator of mitochondrially encoded cytochrome c oxidase I" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 5.9e-15, P = 5.9e-15
 Identities = 33/72 (45%), Positives = 52/72 (72%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVKEGG  +P  N  LA+ ++ C+  +
Sbjct:    55 AGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKEGG-PNPENNSSLANILELCRSKN 113

Query:    88 MPMTTIENAIKS 99
             MP +TIE+A+K+
Sbjct:   114 MPKSTIESALKT 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BJK7 TACO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 35/71 (49%), Positives = 49/71 (69%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             AGH+KW  +RHIK  KD E++ +F+ LS  ++LAVKEGG  +P  N  LAS ++ C+   
Sbjct:    58 AGHNKWSKVRHIKGPKDAERSRIFSKLSLSIRLAVKEGG-PNPELNSNLASILEVCRSKH 116

Query:    88 MPMTTIENAIK 98
             MP +TIE A+K
Sbjct:   117 MPKSTIEAALK 127

GO:0005739 "mitochondrion" evidence=IEA

CGD|CAF0006898 orf19.442 [Candida albicans (taxid:5476)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/51 (70%), Positives = 39/51 (76%)

Query:   158 FLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG 208
             F   S+P+TR+  ASV LATALAHNVFPVPGGP    PLGGSIP LTN SG
Sbjct:   107 FCTNSDPMTRINVASVSLATALAHNVFPVPGGPYNNIPLGGSIPNLTNLSG 157

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A299 CaO19.442 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/51 (70%), Positives = 39/51 (76%)

Query:   158 FLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGSIPRLTNFSG 208
             F   S+P+TR+  ASV LATALAHNVFPVPGGP    PLGGSIP LTN SG
Sbjct:   107 FCTNSDPMTRINVASVSLATALAHNVFPVPGGPYNNIPLGGSIPNLTNLSG 157

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BSH4 TACO1 "Translational activator of cytochrome c oxidase 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 33/71 (46%), Positives = 48/71 (67%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             AGH+KW  +RHIK  KD E++ +F+ L   ++LAVKEGG  +P  N  LA+ ++ C+   
Sbjct:    58 AGHNKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGG-PNPEHNSNLANILEVCRSKH 116

Query:    88 MPMTTIENAIK 98
             MP +TIE A+K
Sbjct:   117 MPKSTIETALK 127

GO:0006417 "regulation of translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2RFJ8 TACO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 42/107 (39%), Positives = 62/107 (57%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             AGH+KW  +RHIK  KD E++ +F+ L   ++LAVKEGG  +P  N  LA+ ++ C+   
Sbjct:    59 AGHNKWSKVRHIKGPKDAERSRIFSKLCLSIRLAVKEGG-PNPELNSSLANILEVCRSKH 117

Query:    88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSAC 134
             MP +TIE ++K     +++Y   E    P   +L I  L S  GS C
Sbjct:   118 MPKSTIEASLKMRKA-KDVYLLYE-GRGPGGSSLLIEAL-SNSGSKC 161

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P62036 GSU1074 "Probable transcriptional regulatory protein GSU1074" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             +GH+KW  IRH K A D ++  +FT L K++ +A K GGG DPN N RL + +D  K  +
Sbjct:     2 SGHNKWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGG-DPNGNPRLRAAVDKAKAEN 60

Query:    88 MPMTTIENAIK 98
             MP   IE AIK
Sbjct:    61 MPKDNIERAIK 71

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1074 GSU_1074 "conserved hypothetical protein TIGR01033" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query:    28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
             +GH+KW  IRH K A D ++  +FT L K++ +A K GGG DPN N RL + +D  K  +
Sbjct:     2 SGHNKWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGG-DPNGNPRLRAAVDKAKAEN 60

Query:    88 MPMTTIENAIK 98
             MP   IE AIK
Sbjct:    61 MPKDNIERAIK 71

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	208
pfam01709	234	pfam01709, Transcrip_reg, Transcriptional regulato	2e-26
PRK00110	245	PRK00110, PRK00110, hypothetical protein; Validate	1e-24
COG0217	241	COG0217, COG0217, Uncharacterized conserved protei	2e-24
TIGR01033	238	TIGR01033, TIGR01033, DNA-binding regulatory prote	2e-22
PRK12378	235	PRK12378, PRK12378, hypothetical protein; Provisio	2e-17

>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator

 Score =  100 bits (253), Expect = 2e-26
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 31 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPM 90
          SKW NI+H KAA+D ++  +FT L K++ +A K GG  DP  N RL   I+  K ++MP 
Sbjct: 1  SKWANIKHRKAAQDAKRGKIFTKLGKEITVAAKMGGP-DPEGNPRLRLAIEKAKAANMPK 59

Query: 91 TTIENAIK 98
            IE AIK
Sbjct: 60 DNIERAIK 67

This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234

>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated

 Score = 96.7 bits (242), Expect = 1e-24
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW NI+H K A+D ++  +FT L +++ +A K GGG DP  N RL   ID  K ++
Sbjct: 2  AGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGG-DPEGNPRLRLAIDKAKAAN 60

Query: 88 MPMTTIENAIK 98
          MP   IE AIK
Sbjct: 61 MPKDNIERAIK 71

Length = 245

>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown]

 Score = 96.1 bits (240), Expect = 2e-24
 Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW NI+H KAA+D +++ +FT L K++ +A K+GG  DP +N RL + I+  K ++
Sbjct: 2  AGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGP-DPESNPRLRTAIEKAKAAN 60

Query: 88 MPMTTIENAIK 98
          MP   IE AIK
Sbjct: 61 MPKDNIERAIK 71

Length = 241

>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW NI+H KAA+D ++  +FT L K++ +A K GGG DP +N RL + I+  K ++
Sbjct: 2  AGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGG-DPESNPRLRTAIEKAKAAN 60

Query: 88 MPMTTIENAIKS 99
          MP   IE AIK 
Sbjct: 61 MPKDNIERAIKK 72

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein [Regulatory functions, DNA interactions]. Length = 238

>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 32 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMT 91
           W+NI+  KA KD  K+ +F  L K++ +A K+GG  DP +N  L   I+  KK+++P  
Sbjct: 4  AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGG-PDPESNPALRFVIERAKKANVPKD 62

Query: 92 TIENAIK 98
           IE AIK
Sbjct: 63 VIERAIK 69

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
COG0217	241	Uncharacterized conserved protein [Function unknow	100.0
PRK00110	245	hypothetical protein; Validated	100.0
TIGR01033	238	DNA-binding regulatory protein, YebC/PmpR family.	100.0
PRK12378	235	hypothetical protein; Provisional	100.0
PF01709	234	Transcrip_reg: Transcriptional regulator; InterPro	100.0
KOG2972|consensus	276		100.0
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	98.85

>COG0217 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.9e-55  Score=380.78  Aligned_cols=153  Identities=30%  Similarity=0.424  Sum_probs=136.8

Q ss_pred             cccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCC-
Q psy6519          27 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPEN-  105 (208)
Q Consensus        27 maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~-  105 (208)
                      |+|||||+||||+|+++|++|+|+|+||+|||++|||.|| +||+.||+||.||++||++|||||+|||||+||+|+.+ 
T Consensus         1 MaGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg-~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~~d~   79 (241)
T COG0217           1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGG-PDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGKDG   79 (241)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCCc
Confidence            8999999999999999999999999999999999999999 99999999999999999999999999999999987433 


Q ss_pred             -cc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhh
Q psy6519         106 -IY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQAS  172 (208)
Q Consensus       106 -~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~  172 (208)
                       +|  ++||          |||||||+|||+++||     ++|.|+||+||.+|||+|||+|+|+|.+......+.++ .
T Consensus        80 ~~~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR-----~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l-~  153 (241)
T COG0217          80 ANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVR-----SAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDEL-L  153 (241)
T ss_pred             cceEEEEEEeECCCceEEEEEeccCCcchhHHHHH-----HHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHH-H
Confidence             55  9999          9999999999999999     66666999999999999999999999998665333322 3


Q ss_pred             hHHHHhhccccccC
Q psy6519         173 VLLATALAHNVFPV  186 (208)
Q Consensus       173 ~s~a~A~A~~V~p~  186 (208)
                      ..+-.|.|.+|...
T Consensus       154 e~~ieagaeDv~~~  167 (241)
T COG0217         154 EAAIEAGAEDVEED  167 (241)
T ss_pred             HHHHHCCchhhhcC
Confidence            33445678888776

>PRK00110 hypothetical protein; Validated

Probab=100.00  E-value=1.1e-51  Score=361.73  Aligned_cols=150  Identities=29%  Similarity=0.368  Sum_probs=133.3

Q ss_pred             cccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC--C
Q psy6519          27 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP--E  104 (208)
Q Consensus        27 maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~--~  104 (208)
                      |+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.|++||++|++||++|||||+|||||+|+++.  .
T Consensus         1 maGHskW~~Ikh~K~~~D~kksk~f~kl~reI~vAak~GG-~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~   79 (245)
T PRK00110          1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGG-GDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGELDG   79 (245)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCc
Confidence            8999999999999999999999999999999999999999 999999999999999999999999999999999875  2


Q ss_pred             Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhh
Q psy6519         105 NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQAS  172 (208)
Q Consensus       105 ~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~  172 (208)
                      .+|  ++||          |||+|||+|||+++||     ++|+|+||+|+.+|||.|||+|+|+|.+...  ... -..
T Consensus        80 ~~~~e~~YEg~gP~GvaiiVe~lTDN~nRt~~~vR-----~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~--~~d-~~~  151 (245)
T PRK00110         80 ANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVR-----HAFSKNGGNLGETGSVSYMFDRKGVIVIEPL--DED-ELM  151 (245)
T ss_pred             cceEEEEEEEEcCCCeEEEEEEecCCHHHHHHHHH-----HHHHhcCceeCCCcceEEEeccceEEEeCCC--CHH-HHH
Confidence            344  9999          9999999999999999     6677799999999999999999999999743  111 222


Q ss_pred             hHHHHhhcccccc
Q psy6519         173 VLLATALAHNVFP  185 (208)
Q Consensus       173 ~s~a~A~A~~V~p  185 (208)
                      ..+-.|.|.+|..
T Consensus       152 e~aieaGaeDv~~  164 (245)
T PRK00110        152 EAALEAGAEDVET  164 (245)
T ss_pred             HHHHhCCCCEeec
Confidence            3334577988864

>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family

Probab=100.00  E-value=2.2e-51  Score=358.31  Aligned_cols=154  Identities=29%  Similarity=0.397  Sum_probs=135.5

Q ss_pred             cccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC--C
Q psy6519          27 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP--E  104 (208)
Q Consensus        27 maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~--~  104 (208)
                      |+|||||+||||+|+++|++|+|+|+||+|+|++|||+|| +||+.|++||++|++||++|||||+|||||+|+++.  .
T Consensus         1 maGHskw~~Ikh~K~~~D~~ksk~f~kl~r~I~vA~k~GG-~DP~~N~~L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~   79 (238)
T TIGR01033         1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGG-GDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAGELDG   79 (238)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCc
Confidence            7999999999999999999999999999999999999999 999999999999999999999999999999999874  3


Q ss_pred             Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhh
Q psy6519         105 NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQAS  172 (208)
Q Consensus       105 ~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~  172 (208)
                      .+|  ++||          |||+|||+|||+++||     .+|.|+||+|+.+|||.|||+|+|+|.+........ -..
T Consensus        80 ~~~~~~~YEg~gP~GvaiiVe~lTDN~nRt~~~ir-----~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~~~~~~~d-~~~  153 (238)
T TIGR01033        80 SNYEEITYEGYAPGGVAIIVECLTDNKNRTASEVR-----SAFNKNGGSLGEPGSVSYLFSRKGVIEVPKNEVDEE-DLM  153 (238)
T ss_pred             cceEEEEEEEEcCCceEEEEEEecCCHHhHHHHHH-----HHHHHcCCeeCCCCceeeeeecceEEEECCCCCCHH-HHH
Confidence            344  9999          9999999999999999     777779999999999999999999999974322222 223


Q ss_pred             hHHHHhhccccccCC
Q psy6519         173 VLLATALAHNVFPVP  187 (208)
Q Consensus       173 ~s~a~A~A~~V~p~P  187 (208)
                      ..+..|.|.+|.+..
T Consensus       154 e~aieaGAedv~~~~  168 (238)
T TIGR01033       154 EAAIEAGAEDIDVDD  168 (238)
T ss_pred             HHHHhCCCceeeccC
Confidence            334567799986543

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.

>PRK12378 hypothetical protein; Provisional

Probab=100.00  E-value=5.3e-49  Score=343.14  Aligned_cols=148  Identities=28%  Similarity=0.396  Sum_probs=129.2

Q ss_pred             ccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC-Cc
Q psy6519          28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE-NI  106 (208)
Q Consensus        28 aGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~-~~  106 (208)
                      +|| ||+||||+|+++|++|+|+|+||+|||++|||+|| +||+.|++||.+|++||++|||||+|||||||+++.+ .+
T Consensus         1 ~g~-kW~~Ikh~K~~~Da~ksk~f~kl~reI~vA~k~GG-~dP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~   78 (235)
T PRK12378          1 MGR-AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGG-PDPESNPALRFVIERAKKANVPKDVIERAIKKAKGGGGED   78 (235)
T ss_pred             CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCCCc
Confidence            477 99999999999999999999999999999999999 9999999999999999999999999999999998753 34


Q ss_pred             c--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhhhH
Q psy6519         107 Y--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVL  174 (208)
Q Consensus       107 ~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~~s  174 (208)
                      |  ++||          |||+|||+|||+++||     ++|.|+||+|+.+|||+|||+|+|+|.+...  + ..-....
T Consensus        79 ~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr-----~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~--~-~d~~~e~  150 (235)
T PRK12378         79 YEEVRYEGFGPNGVMVIVECLTDNVNRTVANVR-----SAFNKNGGNLGTSGSVAFMFDHKGVFVFEGD--D-EDELLEA  150 (235)
T ss_pred             eEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHH-----HHHhhcCCeECCCCceeeeeecceEEEeCCC--C-HHHHHHH
Confidence            4  9999          9999999999999999     6677799999999999999999999999754  2 2222333


Q ss_pred             HHHhhc--ccccc
Q psy6519         175 LATALA--HNVFP  185 (208)
Q Consensus       175 ~a~A~A--~~V~p  185 (208)
                      +-.|.|  .+|..
T Consensus       151 aieaGa~~edv~~  163 (235)
T PRK12378        151 LIDADVDVEDVEE  163 (235)
T ss_pred             HHhCCCCcccccc
Confidence            334555  66643

>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins

Probab=100.00  E-value=9.1e-47  Score=327.98  Aligned_cols=148  Identities=33%  Similarity=0.444  Sum_probs=121.6

Q ss_pred             hHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC--CCcc-
Q psy6519          31 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP--ENIY-  107 (208)
Q Consensus        31 sKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~--~~~~-  107 (208)
                      |||+||||+|+++|++|+++|+||+|||++|||+|| |||+.|++|+++|++||+.|||||+|||||+|+++.  ..++ 
T Consensus         1 sKW~nIkh~K~~~D~~ksk~f~kl~reI~~Avk~GG-~DP~~N~~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~   79 (234)
T PF01709_consen    1 SKWSNIKHKKAAQDAKKSKLFTKLSREITVAVKEGG-PDPDMNPRLRSAIEKAKKANMPKDNIERAIKKASGKSDGANYE   79 (234)
T ss_dssp             -SCGGTSSSTTTTTTSHHHHHHHHHHHHHHHHHCC--S-GGGSHHHHHHHHHHHHTT--HHHHHHHHHHCCSTSST---E
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCce
Confidence            799999999999999999999999999999999999 999999999999999999999999999999999885  2333 


Q ss_pred             -eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhhhHHH
Q psy6519         108 -GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLA  176 (208)
Q Consensus       108 -~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~~s~a  176 (208)
                       ++||          |||+|||+|||+++||     .+|.|+||+|+.+|||+|||+|+|+|.+......+. -....+-
T Consensus        80 ~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir-----~~~~K~gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d-~~~e~aI  153 (234)
T PF01709_consen   80 EITYEGYGPGGVAIIVECLTDNKNRTVSDIR-----SIFKKNGGSLGPSGSVSFMFERKGVIEVSKKDLDED-ELMEDAI  153 (234)
T ss_dssp             EEEEEEEETTTEEEEEEEEES-HHHHHHHHH-----HHHHTTT-EEE-TTSSGGGEEEEEEEEEEHCCS-HH-HHHHHHH
T ss_pred             EEEEEEEcCCCcEEEEEEeCCCHhHHHHHHH-----HHHHHcCceeCCCCcceeeeeeeEEEEEEeCCCChH-HHHHHHH
Confidence             9999          9999999999999999     667779999999999999999999999984333333 2233344


Q ss_pred             Hhhcccccc
Q psy6519         177 TALAHNVFP  185 (208)
Q Consensus       177 ~A~A~~V~p  185 (208)
                      .|.|.+|..
T Consensus       154 e~GaeDve~  162 (234)
T PF01709_consen  154 EAGAEDVEE  162 (234)
T ss_dssp             HHTESEEEE
T ss_pred             hCCCcEeee
Confidence            567999973

This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.

>KOG2972|consensus

Probab=100.00  E-value=5.2e-39  Score=282.27  Aligned_cols=165  Identities=27%  Similarity=0.376  Sum_probs=134.8

Q ss_pred             eecccccCcccch-hccccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCH
Q psy6519          12 KVHRLIPDEGYLL-VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPM   90 (208)
Q Consensus        12 ~~~r~~~~~~~~s-~~maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPk   90 (208)
                      |..|+.+.+.  | ..|+|||||+||||+|+|+|++|+|++.||+++|..|||.|| +||+.|.+|+.+++.||+.+|||
T Consensus        15 ~~s~s~sv~~--s~~~~sgH~kwskIk~~Kg~nD~~rsk~~nkl~~~i~~aVk~gg-~np~lN~~LAtlle~ak~~~vpk   91 (276)
T KOG2972|consen   15 HFSRSRSVTT--SGWIMSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGG-ANPELNMRLATLLESAKKISVPK   91 (276)
T ss_pred             hcCchhheec--ccceecccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHhcC-CCchhhhHHHHHHHHHHhcCCCH
Confidence            4555444431  4 469999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCC---cceEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccc
Q psy6519          91 TTIENAIKSCNVPEN---IYGYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGL  157 (208)
Q Consensus        91 d~IErAIkka~~~~~---~~~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~  157 (208)
                      |.||+||+||+++++   .+..||          ||++|||+||++++||++|++     +||  +..+++.|||+++|+
T Consensus        92 d~ien~i~ras~k~~~a~e~~~ye~~gp~GV~liVealTdnknr~~~~iRs~~nk-----~GG--~s~~~~r~~FdkKG~  164 (276)
T KOG2972|consen   92 DGIENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNK-----HGG--ASASGVRFLFDKKGV  164 (276)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEeeecCCceEEEEEeeeccHhHHHHHHHHHHHH-----cCC--cccccceeEEeccce
Confidence            999999999988543   458899          999999999999999955555     998  456899999999994


Q ss_pred             eeecCchhhhhh-hhhhHHHHhhccccccCC
Q psy6519         158 FLECSEPITRMK-QASVLLATALAHNVFPVP  187 (208)
Q Consensus       158 i~~~S~p~t~~~-~a~~s~a~A~A~~V~p~P  187 (208)
                      +++- .|....| .-....+.|.|.++.--|
T Consensus       165 Vv~V-~~~~~dk~vL~ie~ie~~A~d~~~~~  194 (276)
T KOG2972|consen  165 VVNV-PPEKRDKDVLNIEAIEAGAEDIVAEP  194 (276)
T ss_pred             EEec-ChhhcchhhhhHHHHHhcccccccCc
Confidence            3332 3444444 444444667777665443

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=98.85  E-value=3.1e-09  Score=110.24  Aligned_cols=70  Identities=21%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC------CCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC
Q psy6519          33 WQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEG------GGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP  103 (208)
Q Consensus        33 W~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~G------G~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~  103 (208)
                      |.+.+..|.+.+..++|+++|+.++|..|+|.|      | +||+.|++|+.+|++||+.+||++.|+|+|+++.++
T Consensus       296 ~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~-~DP~~NpaLk~aI~~Ak~~~vP~~~I~RvI~~A~qg  371 (1220)
T PRK07562        296 WKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDC-FDPAKNPALKREIKAAKKALVPENYIKRVIQFARQG  371 (1220)
T ss_pred             hccchhhhHHhhhhcchHHHHHHHHHHHHHHhcccccccc-CCccccHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence            445557899999999999999999999999998      5 899999999999999999999999999999998766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
1kon_A	249	Crystal Structure Of E.Coli Yebc Length = 249		2e-10
4f3q_A	247	Structure Of A Yebc Family Protein (Cbu_1566) From		1e-09
1lfp_A	249	Crystal Structure Of A Conserved Hypothetical Prote		8e-09
1mw7_A	240	X-Ray Structure Of Y162_helpy Northeast Structural		2e-04

>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW N RH KAA+D ++  +FT + ++L  A K GGG DP+ N RL + +D    ++
Sbjct: 5  AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNN 63
Query: 88 MPMTTIENAI 97
          M   T+  AI
Sbjct: 64 MTRDTLNRAI 73

>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 28  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
           AGHSKW NI+H KA +D ++  +FT L +++ +A +  GG D ++N RL + +D    ++
Sbjct: 5   AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARL-GGEDIDSNPRLRAVVDKAFAAN 63
Query: 88  MPMTTIENAIK-------SCNVPENIY-GY------LELSCLPWKPTLSIARL------- 126
            P  TI  AIK         N+ E  Y GY      + + CL      ++A +       
Sbjct: 64  XPKDTITRAIKRGAGSGAGDNLVEVRYEGYGPSGVAVXVDCLTDNKNRTVAEVRHAFSKC 123
Query: 127 ---VSLEGS-ACLVSAMSRVRFPPSAN 149
              +  EGS A L      + FPP+++
Sbjct: 124 DGNLGTEGSVAYLFKQRGLITFPPNSD 150

>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHS W  I+H KA  D ++  LF+ L +++ +A +  GG +P  N RL + I+  KK++
Sbjct: 2  AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR-LGGPNPEFNPRLRTAIEQAKKAN 60
Query: 88 MPMTTIENAIK 98
           P   IE AIK
Sbjct: 61 XPWENIERAIK 71

>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 26  RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
           R A   +W  +  +           F  L+K + LA K+GG ++P+TN +L + I   K 
Sbjct: 9   RAAKEKRWDKMSKV-----------FPKLAKAITLAAKDGG-SEPDTNAKLRTAILNAKA 56
Query: 86  SSMPMTTIENAIKSCNVPE------------NIYGYLELSCLPWKPTLSIARLVS 128
            +MP   I+ AIK  +  E            N    + + C+   PT +IA L S
Sbjct: 57  QNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKS 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	9e-26
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	9e-26
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	1e-25
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247

 Score = 99.2 bits (248), Expect = 9e-26
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW NI+H KA +D ++  +FT L +++ +A + GG  D ++N RL + +D    ++
Sbjct: 5  AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGE-DIDSNPRLRAVVDKAFAAN 63

Query: 88 MPMTTIENAIK 98
          MP  TI  AIK
Sbjct: 64 MPKDTITRAIK 74

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249

 Score = 99.1 bits (248), Expect = 9e-26
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHS W  I+H KA  D ++  LF+ L +++ +A + GG  +P  N RL + I+  KK++
Sbjct: 2  AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGP-NPEFNPRLRTAIEQAKKAN 60

Query: 88 MPMTTIENAIK 98
          MP   IE AIK
Sbjct: 61 MPWENIERAIK 71

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
          AGHSKW N RH KAA+D ++  +FT + ++L  A K GGG DP+ N RL + +D    ++
Sbjct: 5  AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNN 63

Query: 88 MPMTTIENAIK 98
          M   T+  AI 
Sbjct: 64 MTRDTLNRAIA 74

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 32 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMT 91
           ++  R  K  +  + + +F  L+K + LA K+GG  +P+TN +L + I   K  +MP  
Sbjct: 4  AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGS-EPDTNAKLRTAILNAKAQNMPKD 62

Query: 92 TIENAIK 98
           I+ AIK
Sbjct: 63 NIDAAIK 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 43/137 (31%)

Query: 3   LLGRPLGVYKVHRLI------------------PDEGYLLVRYAGHSKWQNIRHIKAAKD 44
           L  +    Y +HR I                    + Y    + GH       H+K  + 
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHIGH-------HLKNIEH 486

Query: 45  QEKATLFTN-------LSKKLKLAVKEGGGTDPNTN-------YRLASTIDYCKKSSMPM 90
            E+ TLF         L +K++        +    N       Y+     D   K    +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLV 545

Query: 91  TTIENAIKSCNVPENIY 107
             I + +      EN+ 
Sbjct: 546 NAILDFLPKIE--ENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	100.0
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	100.0
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	100.0
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	100.0

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}

Probab=100.00  E-value=2.5e-55  Score=384.12  Aligned_cols=153  Identities=25%  Similarity=0.356  Sum_probs=129.6

Q ss_pred             ccccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC-C
Q psy6519          26 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP-E  104 (208)
Q Consensus        26 ~maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~-~  104 (208)
                      .|+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.|++||.+|++||++|||||+|||||||+++. +
T Consensus         3 ~maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG-~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~   81 (247)
T 4f3q_A            3 AMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGG-EDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGA   81 (247)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC----
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCC
Confidence            59999999999999999999999999999999999999999 999999999999999999999999999999999875 2


Q ss_pred             -Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhh
Q psy6519         105 -NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQA  171 (208)
Q Consensus       105 -~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a  171 (208)
                       .+|  ++||          |||+|||+|||+++||     ++|.|+||+||.+|||+|||+|+|+|.+..+ . +..-.
T Consensus        82 ~~~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR-----~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~-~~d~~  154 (247)
T 4f3q_A           82 GDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVR-----HAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-S-DEEKI  154 (247)
T ss_dssp             -CCCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHH-----HHHHHTTCEECCTTSSGGGEEEEEEEEECTT-C-CHHHH
T ss_pred             cCCceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHH-----HHHHhcCceECCCCceeEEEeeeEEEEECCC-C-CHHHH
Confidence             355  9999          9999999999999999     7777799999999999999999999999754 2 22222


Q ss_pred             hhHHHHhhccccccC
Q psy6519         172 SVLLATALAHNVFPV  186 (208)
Q Consensus       172 ~~s~a~A~A~~V~p~  186 (208)
                      ...+-.|.|.+|...
T Consensus       155 ~e~aieaGAeDv~~~  169 (247)
T 4f3q_A          155 MEIALEVGAEDVTTN  169 (247)
T ss_dssp             HHHHHHHTCSEEEEC
T ss_pred             HHHHHhCCCceeeec
Confidence            333446779999865

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1

Probab=100.00  E-value=8e-55  Score=381.35  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=124.7

Q ss_pred             hccccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC
Q psy6519          25 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE  104 (208)
Q Consensus        25 ~~maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~  104 (208)
                      .+|+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++..
T Consensus         2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~   80 (249)
T 1kon_A            2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGG-GDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGD   80 (249)
T ss_dssp             ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC------CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC----
T ss_pred             CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCC
Confidence            369999999999999999999999999999999999999999 9999999999999999999999999999999998762


Q ss_pred             --Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhh
Q psy6519         105 --NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQ  170 (208)
Q Consensus       105 --~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~  170 (208)
                        .+|  ++||          |||+|||+|||++|||     ++|.|+||+||.+|||+|||+|+|+|.+..+  .+. .
T Consensus        81 ~~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~~--~ed-~  152 (249)
T 1kon_A           81 DDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVR-----HAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DED-T  152 (249)
T ss_dssp             --CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHH-H
T ss_pred             cccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCceecCCCchhhhhheeeEEEECCC--CHH-H
Confidence              355  9999          9999999999999999     7777799999999999999999999999742  121 2


Q ss_pred             hhhHHHHhhcccccc
Q psy6519         171 ASVLLATALAHNVFP  185 (208)
Q Consensus       171 a~~s~a~A~A~~V~p  185 (208)
                      ....+-.|.|.+|..
T Consensus       153 ~le~aleaGAeDv~~  167 (249)
T 1kon_A          153 IMEAALEAGAEDVVT  167 (249)
T ss_dssp             HHHHHHHHTCSEEEE
T ss_pred             HHHHHHhCCCceeee
Confidence            223333567999874

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1

Probab=100.00  E-value=8.4e-55  Score=381.20  Aligned_cols=151  Identities=23%  Similarity=0.327  Sum_probs=129.9

Q ss_pred             cccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC--
Q psy6519          27 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE--  104 (208)
Q Consensus        27 maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~--  104 (208)
                      |+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++..  
T Consensus         1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~   79 (249)
T 1lfp_A            1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGG-PNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEG   79 (249)
T ss_dssp             ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHC-SCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCcc
Confidence            8999999999999999999999999999999999999999 9999999999999999999999999999999988752  


Q ss_pred             Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhh
Q psy6519         105 NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQAS  172 (208)
Q Consensus       105 ~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~  172 (208)
                      .+|  ++||          |||+|||+|||+++||     ++|.|+||+||.+|||+|||+|+|+|.+......+. ...
T Consensus        80 ~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed-~~l  153 (249)
T 1lfp_A           80 EQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVR-----HVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEE-ELL  153 (249)
T ss_dssp             CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHH-HHH
T ss_pred             cceEEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHH-HHH
Confidence            255  9999          9999999999999999     777779999999999999999999999874322222 222


Q ss_pred             hHHHHhhccccc
Q psy6519         173 VLLATALAHNVF  184 (208)
Q Consensus       173 ~s~a~A~A~~V~  184 (208)
                      ..+-.|.|.+|.
T Consensus       154 e~aleaGAeDv~  165 (249)
T 1lfp_A          154 EKAIEVGAEDVQ  165 (249)
T ss_dssp             HHHHHHTCSEEE
T ss_pred             HHHHhcCCceee
Confidence            333356799886

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1

Probab=100.00  E-value=7.7e-52  Score=360.82  Aligned_cols=150  Identities=25%  Similarity=0.333  Sum_probs=111.3

Q ss_pred             ccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCCcc
Q psy6519          28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIY  107 (208)
Q Consensus        28 aGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~~~  107 (208)
                      +| |||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++.+.+|
T Consensus         1 aG-sKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~~~~~   78 (240)
T 1mw7_A            1 MG-RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGG-SEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNL   78 (240)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTTC-SCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTTCCC
T ss_pred             CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCe
Confidence            58 999999999999999999999999999999999999 9999999999999999999999999999999998874455


Q ss_pred             --eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhC-ccccCCCCcchhhccccceeecC----chhhhhhh
Q psy6519         108 --GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAM-SRVRFPPSANFISNRLGLFLECS----EPITRMKQ  170 (208)
Q Consensus       108 --~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~g-g~l~~sGSVsfmF~r~G~i~~~S----~p~t~~~~  170 (208)
                        ++||          |||+|||+|||++|||     ++|.|+| |+|+.+|||+|||+|+|+|.+..    +...+...
T Consensus        79 eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~  153 (240)
T 1mw7_A           79 SEITYEGKANFGVLIIMECMTDNPTRTIANLK-----SYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLED  153 (240)
T ss_dssp             EEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHH
T ss_pred             EEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHH
Confidence              9999          9999999999999999     6666799 99999999999999999999873    11111112


Q ss_pred             hhhHHHHhhccccc
Q psy6519         171 ASVLLATALAHNVF  184 (208)
Q Consensus       171 a~~s~a~A~A~~V~  184 (208)
                      ....+-.|.|.+|.
T Consensus       154 ~le~aleaGAeDv~  167 (240)
T 1mw7_A          154 LEFALIDYGLEELE  167 (240)
T ss_dssp             HHHHHGGGTEEEEE
T ss_pred             HHHHHHHCCCceee
Confidence            22233356788886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1kona_	244	e.39.1.1 (A:) Hypothetical protein YebC {Escherich	2e-27
d1lfpa_	243	e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex	5e-26
d1mw7a_	220	e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob	9e-13

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 29  GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSM 88
           GHSKW N RH KAA+D ++  +FT + ++L  A K GGG DP+ N RL + +D    ++M
Sbjct: 1   GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNNM 59

Query: 89  PMTTIENAIKSCNVPENIYGYLEL 112
              T+  AI      ++      +
Sbjct: 60  TRDTLNRAIARGVGGDDDANMETI 83

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

 Score = 98.6 bits (245), Expect = 5e-26
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 31  SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPM 90
           S W  I+H KA  D ++  LF+ L +++ +A + GG  +P  N RL + I+  KK++MP 
Sbjct: 1   SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGP-NPEFNPRLRTAIEQAKKANMPW 59

Query: 91  TTIENAIKSCNVPENI 106
             IE AIK        
Sbjct: 60  ENIERAIKKGAGELEG 75

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

 Score = 62.4 bits (151), Expect = 9e-13
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 50  LFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIY 107
           +F  L+K + LA K+GG  +P+TN +L + I   K  +MP   I+ AIK  +  E   
Sbjct: 2   VFPKLAKAITLAAKDGGS-EPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1kona_	244	Hypothetical protein YebC {Escherichia coli [TaxId	100.0
d1lfpa_	243	Hypothetical protein aq1575 {Aquifex aeolicus [Tax	100.0
d1mw7a_	220	Hypothetical protein HP0162 {Helicobacter pylori [	100.0

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-53  Score=364.20  Aligned_cols=152  Identities=26%  Similarity=0.340  Sum_probs=128.5

Q ss_pred             cchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCC--c
Q psy6519          29 GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPEN--I  106 (208)
Q Consensus        29 GHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~--~  106 (208)
                      |||||+||||+|+++|++|+|+|+||+|+|++|||+|| |||+.|++||+||++||++|||||+|||||||+++...  +
T Consensus         1 GHsKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG-~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~~~~~   79 (244)
T d1kona_           1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGG-GDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDAN   79 (244)
T ss_dssp             CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC------CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CC
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCCCCCCc
Confidence            89999999999999999999999999999999999999 99999999999999999999999999999999876532  4


Q ss_pred             c--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhhhH
Q psy6519         107 Y--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVL  174 (208)
Q Consensus       107 ~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~~s  174 (208)
                      |  ++||          |||+|||+|||+++||     ++|.|+||+|+.+|||+|||+|+|+|.+... .  ..-....
T Consensus        80 ~~e~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR-----~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~--~d~l~e~  151 (244)
T d1kona_          80 METIIYEGYGPGGTAIMIECLSDNRNRTVAEVR-----HAFSKCGGNLGTDGSVAYLFSKKGVISFEKG-D--EDTIMEA  151 (244)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHTTTCEECCTTSSGGGEEEEEEEEESSS-C--HHHHHHH
T ss_pred             eEEEEEEEEcCCccEEEEEEecCcHHHHHHHHH-----HHHHHcCCeeCCCccHhhhhheeceeccCCC-C--HHHHHHH
Confidence            4  8999          9999999999999999     7777799999999999999999999998754 1  2223445


Q ss_pred             HHHhhccccccCCCC
Q psy6519         175 LATALAHNVFPVPGG  189 (208)
Q Consensus       175 ~a~A~A~~V~p~Pgg  189 (208)
                      +..+.|.+|+..-.|
T Consensus       152 aie~gAeDv~~~d~~  166 (244)
T d1kona_         152 ALEAGAEDVVTYDDG  166 (244)
T ss_dssp             HHHHTCSEEEECTTS
T ss_pred             HHHhccchhcccCCC
Confidence            556779999987655

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.2e-50  Score=344.82  Aligned_cols=148  Identities=22%  Similarity=0.316  Sum_probs=130.2

Q ss_pred             hHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC--Ccc-
Q psy6519          31 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE--NIY-  107 (208)
Q Consensus        31 sKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~--~~~-  107 (208)
                      |||+||||+|+++|++|+|+|+||+|+|++|||+|| |||+.|++||+||++||++|||||+|||||+|+++..  ++| 
T Consensus         1 SkW~nIkh~K~~~D~~r~k~f~k~~r~I~~A~k~GG-~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~   79 (243)
T d1lfpa_           1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGG-PNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFE   79 (243)
T ss_dssp             CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHC-SCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCE
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCccCHHHHHHHHHHHHcCCcHHHHHHHHHhcccccccccce
Confidence            799999999999999999999999999999999999 9999999999999999999999999999999987642  334 


Q ss_pred             -eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhhhHHH
Q psy6519         108 -GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQASVLLA  176 (208)
Q Consensus       108 -~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~~s~a  176 (208)
                       ++||          |||+|||+|||+++||     ++|.|+||+|+.+|||+|||+|+|+|.+......+..+ ...+.
T Consensus        80 ~~~yEg~gP~GvaiiVe~lTDN~nRt~~~vr-----~~f~K~gG~l~~~GsV~~~F~~kG~i~~~~~~~~ed~l-~~~~i  153 (243)
T d1lfpa_          80 EVIYEGYAPGGVAVMVLATTDNRNRTTSEVR-----HVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEEL-LEKAI  153 (243)
T ss_dssp             EEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHH-HHHHH
T ss_pred             EEEEEEEecCCcEEEEEEeccchhhhHHHHH-----HHHHhcCCccccccceeeeecccceeccccCccchHHH-HHHHh
Confidence             9999          9999999999999999     77788999999999999999999999987554443332 33344


Q ss_pred             Hhhcccccc
Q psy6519         177 TALAHNVFP  185 (208)
Q Consensus       177 ~A~A~~V~p  185 (208)
                      .+.|.+|..
T Consensus       154 e~gaed~e~  162 (243)
T d1lfpa_         154 EVGAEDVQP  162 (243)
T ss_dssp             HHTCSEEEC
T ss_pred             hhccccccc
Confidence            566777764

>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=4.2e-41  Score=285.87  Aligned_cols=132  Identities=27%  Similarity=0.375  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCCcc--eEEE----------EEEec
Q psy6519          49 TLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIY--GYLE----------LSCLP  116 (208)
Q Consensus        49 k~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~~~--~~yE----------ve~~T  116 (208)
                      |+|+||+|||++|||+|| +||+.|++||+||++||++|||||+|||||||+++++++|  ++||          |||+|
T Consensus         1 k~f~kl~reI~vAak~GG-~Dp~~N~~L~~ai~~Ak~~nmPkd~IerAIkk~~~~~~~~~e~~YEg~gp~gvaiiVe~lT   79 (220)
T d1mw7a_           1 KVFPKLAKAITLAAKDGG-SEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMT   79 (220)
T ss_dssp             CCHHHHHHHHHHHHHTTC-SCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTTCCCEEEEEEEEETTTEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHcCC-CCcccCHHHHHHHHHHHHhCCCccHHHHHHHhhcccCCCceEEEEEEecCCceEEEEEEec
Confidence            689999999999999999 9999999999999999999999999999999998776665  9999          99999


Q ss_pred             CCCCchhhhhhhhcchhhHhhh-CccccCCCCcchhhccccceeecCchhhhhhhh----hhHHHHhhccccccC
Q psy6519         117 WKPTLSIARLVSLEGSACLVSA-MSRVRFPPSANFISNRLGLFLECSEPITRMKQA----SVLLATALAHNVFPV  186 (208)
Q Consensus       117 dn~nRT~~~vR~~fgka~~~k~-gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a----~~s~a~A~A~~V~p~  186 (208)
                      ||+|||+++||     ++|.|+ ||+|+.+|||+|||+|+|+|.+......+.+..    ...+-.|.|.+|...
T Consensus        80 DN~nRt~~~vr-----~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~~d~~~~~aie~GaeDve~~  149 (220)
T d1mw7a_          80 DNPTRTIANLK-----SYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEV  149 (220)
T ss_dssp             SCHHHHHHHHH-----HHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEEEE
T ss_pred             CchhhHHHHHH-----HHHhhcccccccCCCcchhhheeeeeeeecCCccchhhcchhhhhHHhhhccccccccc
Confidence            99999999999     777776 889999999999999999999864322222221    222335557777643