Psyllid ID: psy6547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHHHHHccEEEEEcccccccccccHHHHccccccccHHHHHHHccccccccEEEEccHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHcccccccccEEEEccccHHHHHHHcHccccEEEEEEcccEcccccEcccccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHcccccEEEEcHHHHccccccEEEEEcHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccEEEEEEEEcccccccccHHHHHHHHHHcccEEEcccccEEEEccccEEcHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlittdptsynefgphmpgyniipyndvDALEAKlksnpnicafmvepiqgeagavvpddgyLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIhyedvrpdIVILGKAlsgglypisavladdevmgtlvpgthgstyggnpLACKLAMTALDVILEENMIENAYKMGEIFRselsspankskasfklssgglkksINTLILSVSAILEVYDVCIKMkdaglvtkpisnniirlspalniTEQELREGLDIIINTINTMAAKKT
Flexible Loop (DISEMBL)
mlittdptsynefgphmpGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKlssgglkksinTLILSVSAILEVYDVCIKMKDAglvtkpisnniirlspalNITEQELREGLDIIINTINTMAAKKT
Low Complexity Region (SEG)
MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANkskasfklssgglkksINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Disordered region (IsUnstruct)
************FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF*********************LKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT******
Disordered Region (DISOPRED)
MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA****
Disordered Region (DISEMBL)
MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE****************GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Disordered Region (DISPRO)
***TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9VW26	431	Ornithine aminotransferas	yes	N/A	0.939	0.580	0.565	5e-82
P04181	439	Ornithine aminotransferas	yes	N/A	0.932	0.564	0.570	2e-80
P49724	432	Ornithine aminotransferas	N/A	N/A	0.939	0.578	0.577	5e-80
P29758	439	Ornithine aminotransferas	yes	N/A	0.936	0.567	0.560	1e-79
P04182	439	Ornithine aminotransferas	yes	N/A	0.932	0.564	0.558	4e-79
Q3ZCF5	439	Ornithine aminotransferas	yes	N/A	0.936	0.567	0.568	1e-74
Q18040	422	Probable ornithine aminot	yes	N/A	0.951	0.599	0.494	2e-70
Q07805	414	Ornithine aminotransferas	N/A	N/A	0.939	0.603	0.490	4e-69
Q6LFH8	414	Ornithine aminotransferas	yes	N/A	0.939	0.603	0.490	4e-69
Q7RT90	414	Ornithine aminotransferas	N/A	N/A	0.936	0.601	0.498	2e-68

>sp|Q9VW26|OAT_DROME Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster GN=Oat PE=2 SV=1

 Score =  304 bits (778), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 146/258 (56%), Positives = 195/258 (75%), Gaps = 8/258 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           + DP+SY  FGP MPG+ +I Y++V ALE  LK +PN+CAFMVEPIQGEAG VVP DGYL
Sbjct: 182 SNDPSSYEGFGPFMPGFELIEYDNVSALEESLK-DPNVCAFMVEPIQGEAGVVVPSDGYL 240

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LC++YNVL+IADEVQTGL RTGKLLA+ YE V+PDI+ILGKALSGG+YP+SAVL 
Sbjct: 241 KKVRELCTKYNVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC 300

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  + PG HGSTYGGNPL C++AM AL+V+ EE + ENA+KMG++ R+ELS+    
Sbjct: 301 NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELST---L 357

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K    +  G  K  +N ++++     + ++VC+++K+ GL+ KP   +IIR +P L I 
Sbjct: 358 PKDVVSVVRG--KGLLNAIVINQK--FDAWEVCLRLKENGLLAKPTHGDIIRFAPPLVIN 413

Query: 244 EQELREGLDIIINTINTM 261
           E ++RE +DII  TI +M
Sbjct: 414 ETQMRESIDIIRKTILSM 431

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 3

>sp|P04181|OAT_HUMAN Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/256 (57%), Positives = 193/256 (75%), Gaps = 8/256 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366

Query: 183 KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
              A   +   GL   +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 367 VVTA---VRGKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query: 243 TEQELREGLDIIINTI 258
            E ELRE ++II  TI
Sbjct: 421 KEDELRESIEIINKTI 436

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P49724|OAT_DROAN Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae GN=Oat PE=1 SV=1

 Score =  297 bits (761), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 191/258 (74%), Gaps = 8/258 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           + DP+SY  FGP MPG+ +I Y++V ALE  LK +PN+CAFMVEPIQGE G VVP DGYL
Sbjct: 183 SNDPSSYEGFGPFMPGFELIEYDNVTALEEALK-DPNVCAFMVEPIQGERGVVVPSDGYL 241

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LCS+ NVL+IADEVQTGL RTGKLLA++YEDV+PDI+ILGKALSGGLYP+SAVL 
Sbjct: 242 KKVRELCSKNNVLWIADEVQTGLARTGKLLAVNYEDVQPDILILGKALSGGLYPVSAVLC 301

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D VM  + PG HGSTYGGNPL C++AM AL+V+ EE + ENA+KMGE+ RSELS+    
Sbjct: 302 NDPVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGELLRSELST---L 358

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K    +  G  K  +N ++  ++   + + VC+K+K+ GL+ KP   +IIR +P L I 
Sbjct: 359 PKDVVSVVRG--KGLLNAIV--INEKYDAWKVCLKLKENGLLAKPTHGDIIRFAPPLVIM 414

Query: 244 EQELREGLDIIINTINTM 261
              LRE ++II  TI +M
Sbjct: 415 NPRLRESIEIIKKTILSM 432

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P29758|OAT_MOUSE Ornithine aminotransferase, mitochondrial OS=Mus musculus GN=Oat PE=1 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/255 (56%), Positives = 189/255 (74%), Gaps = 6/255 (2%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG+  IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFETIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDPGYL 246

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ +E+VRPD+V+LGKALSGGLYP+SAVL 
Sbjct: 247 TGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDMVLLGKALSGGLYPVSAVLC 306

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R EL    + 
Sbjct: 307 DDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKLPSD 366

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
              S +    GL   +N +++  +   + + VC++++D GL+ KP   +IIRL+P L I 
Sbjct: 367 VVTSVR--GKGL---LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVIK 421

Query: 244 EQELREGLDIIINTI 258
           E E+RE ++II  TI
Sbjct: 422 EDEIRESVEIINKTI 436

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P04182|OAT_RAT Ornithine aminotransferase, mitochondrial OS=Rattus norvegicus GN=Oat PE=1 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 191/256 (74%), Gaps = 8/256 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG+  IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFETIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDPGYL 246

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ +E+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 TGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDIVLLGKALSGGLYPVSAVLC 306

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EE++ ENA KMG I R EL   P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEEHLAENADKMGAILRKELMKLPSD 366

Query: 183 KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
              A   +   GL   +N +++  +   + + VC++++D GL+ KP   +IIRL+P L I
Sbjct: 367 VVTA---VRGKGL---LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI 420

Query: 243 TEQELREGLDIIINTI 258
            E E+RE ++II  TI
Sbjct: 421 KEDEIRESVEIINKTI 436

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q3ZCF5|OAT_BOVIN Ornithine aminotransferase, mitochondrial OS=Bos taurus GN=OAT PE=2 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/255 (56%), Positives = 189/255 (74%), Gaps = 6/255 (2%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG+ IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFEIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+Q+ VLFIADE+QTGL RTG+ LAI +E+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 VGVRELCTQHQVLFIADEIQTGLARTGRWLAIDHENVRPDIVLLGKALSGGLYPVSAVLC 306

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R+EL    + 
Sbjct: 307 DDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGIILRNELMKLPSD 366

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
              + +    GL   +N +++  +   + + VC++++D GL+ KP   +IIR +P L I 
Sbjct: 367 VVTTVR--GKGL---LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIK 421

Query: 244 EQELREGLDIIINTI 258
           E E+ E ++II  TI
Sbjct: 422 EDEILEAVEIINKTI 436

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q18040|OAT_CAEEL Probable ornithine aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=C16A3.10 PE=2 SV=3

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/261 (49%), Positives = 184/261 (70%), Gaps = 8/261 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP S+  FGP +PG+  +PYN++ A+E  +K + N+ AFMVEPIQGEAG V+PD GYL
Sbjct: 169 STDPDSFARFGPFVPGFKTVPYNNLKAVEDAIK-DKNVAAFMVEPIQGEAGVVLPDPGYL 227

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K V  LC +YNVLFI DEVQ+GLGR+GKLLA ++++VRPDIV+LGKALSGG YP+SAVL 
Sbjct: 228 KGVSDLCKKYNVLFITDEVQSGLGRSGKLLAHYHDNVRPDIVVLGKALSGGFYPVSAVLC 287

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DD VM  + PG HGSTYGGNPLACK+A+ AL+++ EE ++EN+  MG++  S+L +    
Sbjct: 288 DDNVMMNIKPGEHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLPKD 347

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
             ++ +    GL  +I      ++   + + VC+K+K+ GL+ K    +IIR +P L I 
Sbjct: 348 IVSTVR--GKGLFCAI-----VINKKYDAWKVCLKLKENGLLAKNTHGDIIRFAPPLCIN 400

Query: 244 EQELREGLDIIINTINTMAAK 264
           ++++ +  DIII T+   A +
Sbjct: 401 KEQVEQAADIIIKTVTDFAKQ 421

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q07805|OAT_PLAFD Ornithine aminotransferase OS=Plasmodium falciparum (isolate CDC / Honduras) GN=OAT PE=1 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 178/255 (69%), Gaps = 5/255 (1%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TD    N FGP +P +  +PY+D++ALE +L+ +PN+CAF+VEP+QGEAG +VP D Y 
Sbjct: 158 STDKKCKNNFGPFVPNFLKVPYDDLEALEKELQ-DPNVCAFIVEPVQGEAGVIVPSDSYF 216

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             V +LC +YNVLF+ADEVQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA
Sbjct: 217 PGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILA 276

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  L PG HGSTYGGNPLA  + + AL V++ E + ENA K+G  F   L      
Sbjct: 277 NDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKD 336

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
           SK   ++   GL  +I       + ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT
Sbjct: 337 SKVVREVRGKGLLCAIEF----KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCIT 392

Query: 244 EQELREGLDIIINTI 258
           +++L E  +II+ T+
Sbjct: 393 KEQLDECTEIIVKTV 407

The enzyme has a very narrow substrate specificity and can only catalyze the transamination of alpha-ketoglutarate with ornithine or N-acetylornithine and of glutamate-5-semialdehyde with glutamate and alanine.

Plasmodium falciparum (isolate CDC / Honduras) (taxid: 5836)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q6LFH8|OAT_PLAF7 Ornithine aminotransferase OS=Plasmodium falciparum (isolate 3D7) GN=OAT PE=1 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 178/255 (69%), Gaps = 5/255 (1%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TD    N FGP +P +  +PY+D++ALE +L+ +PN+CAF+VEP+QGEAG +VP D Y 
Sbjct: 158 STDKKCKNNFGPFVPNFLKVPYDDLEALEKELQ-DPNVCAFIVEPVQGEAGVIVPSDSYF 216

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             V +LC +YNVLF+ADEVQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA
Sbjct: 217 PGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILA 276

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  L PG HGSTYGGNPLA  + + AL V++ E + ENA K+G  F   L      
Sbjct: 277 NDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKD 336

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
           SK   ++   GL  +I       + ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT
Sbjct: 337 SKVVREVRGKGLLCAIEF----KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCIT 392

Query: 244 EQELREGLDIIINTI 258
           +++L E  +II+ T+
Sbjct: 393 KEQLDECTEIIVKTV 407

The enzyme has a very narrow substrate specificity and can only catalyze the transamination of alpha-ketoglutarate with ornithine or N-acetylornithine and of glutamate-5-semialdehyde with glutamate and alanine.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q7RT90|OAT_PLAYO Ornithine aminotransferase OS=Plasmodium yoelii yoelii GN=OAT PE=1 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/255 (49%), Positives = 181/255 (70%), Gaps = 6/255 (2%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           TT   + N FGP  P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL
Sbjct: 159 TTKKCTSN-FGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYL 216

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           + V  +C +YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA
Sbjct: 217 QGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLA 276

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D++M  + PG HGSTYGGNPLA  + + AL+V++ E + ENA K+G  F   L      
Sbjct: 277 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 336

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
           SK    +   GL  +I       + ++ V D+C+K+K+ GL+T+ + +  IRL+P L IT
Sbjct: 337 SKIVRDVRGKGLLCAIEF----KNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCIT 392

Query: 244 EQELREGLDIIINTI 258
           +++L E  +II+ T+
Sbjct: 393 KEQLDECTEIIVKTV 407

Plasmodium yoelii yoelii (taxid: 73239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
193690595	436	PREDICTED: ornithine aminotransferase, m	0.943	0.575	0.605	6e-88
449665963	434	PREDICTED: ornithine aminotransferase, m	0.954	0.585	0.575	1e-83
332376120	426	unknown [Dendroctonus ponderosae]	0.947	0.591	0.573	2e-82
198438549	442	PREDICTED: similar to mitochondrial orni	0.943	0.567	0.586	1e-81
326672649	379	PREDICTED: ornithine aminotransferase, m	0.932	0.654	0.578	2e-81
195354226	431	GM16950 [Drosophila sechellia] gi|194127	0.939	0.580	0.577	2e-81
195496181	430	GE22477 [Drosophila yakuba] gi|194181685	0.939	0.581	0.581	2e-81
189526312	444	PREDICTED: ornithine aminotransferase, m	0.932	0.558	0.578	3e-81
226471034	429	ornithine aminotransferase [Schistosoma	0.943	0.585	0.583	5e-81
56756008	438	SJCHGC01945 protein [Schistosoma japonic	0.943	0.573	0.583	6e-81

>gi|193690595|ref|XP_001949004.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328701505|ref|XP_003241621.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|328701507|ref|XP_003241622.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 3 [Acyrthosiphon pisum]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 203/256 (79%), Gaps = 5/256 (1%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP S++EFGPH+PGY I+PY+D+  LE  L+ NPN+CAFMVEP+QGEAGAVVP  GYL
Sbjct: 182 STDPISFDEFGPHVPGYQIVPYDDLGKLEQALR-NPNVCAFMVEPLQGEAGAVVPTLGYL 240

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K VR LC++YNVL+I DEVQ GLGRTGK+LA+ YE+V+PD++ILGKALSGG+YPISAVL 
Sbjct: 241 KGVRELCTKYNVLWIDDEVQAGLGRTGKMLAVDYENVKPDLLILGKALSGGVYPISAVLG 300

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           + EVM  L PGTHGSTYGGN LACK+A+ +LDVI+ E ++ENA+KMGEIFRSEL++  NK
Sbjct: 301 NSEVMDVLTPGTHGSTYGGNALACKVALASLDVIISEGLVENAFKMGEIFRSELTARLNK 360

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K   ++   GL   +N ++L+   +  VY +  ++K  G+++KPI +  +R SP L IT
Sbjct: 361 DKV-VQVRGRGL---LNAIVLNTKGVSNVYKLNNELKSNGMISKPIGSGALRFSPPLIIT 416

Query: 244 EQELREGLDIIINTIN 259
           E +LREG+DII+NTIN
Sbjct: 417 EAQLREGIDIIVNTIN 432

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449665963|ref|XP_002164568.2| PREDICTED: ornithine aminotransferase, mitochondrial-like [Hydra magnipapillata]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/259 (57%), Positives = 197/259 (76%), Gaps = 5/259 (1%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP   N++GP+MPG+ I+PYND+ ALE KLK +P+ CAFMVEPIQGEAG +VPD GYL
Sbjct: 181 STDPDCKNDYGPYMPGFYIVPYNDISALEEKLK-HPHTCAFMVEPIQGEAGVIVPDFGYL 239

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LC++YNVL+IADEVQTGL RTGKLL + YED RPDIV+LGKALSGG  PISAVLA
Sbjct: 240 KKVRELCTKYNVLWIADEVQTGLCRTGKLLCVQYEDARPDIVVLGKALSGGTMPISAVLA 299

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDEVM T+ PG HGST+GGNPLA K+A+ +L+V++EE + EN+ K+G IFR+ELS+  N 
Sbjct: 300 DDEVMLTIKPGQHGSTFGGNPLASKVAIASLEVLIEEKLAENSMKLGNIFRNELSAKLNP 359

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
             A+     G L    N +++  +     YDVC++++D GL+ KP   +IIR SP L + 
Sbjct: 360 KVATIVRGKGLL----NAVVIPKTKDYNAYDVCLRLRDNGLLAKPTHGDIIRFSPPLILN 415

Query: 244 EQELREGLDIIINTINTMA 262
           E+++ EG++ I+ T+N+ A
Sbjct: 416 EEQISEGIETIVKTVNSFA 434

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|332376120|gb|AEE63200.1| unknown [Dendroctonus ponderosae]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/258 (57%), Positives = 199/258 (77%), Gaps = 6/258 (2%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP S+  +GP MPG++ +PYND+ ALE  L  +P +C FMVEPIQGEAG  VPD+GYL
Sbjct: 173 STDPDSFEGYGPFMPGFSCVPYNDLKALETAL-CDPLVCGFMVEPIQGEAGIKVPDEGYL 231

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K +R LC++YNVL+IADE+QTGLGRTGK LA+ YEDV+PDI++LGKAL GG+YP+SA LA
Sbjct: 232 KGIRELCTKYNVLWIADEIQTGLGRTGKRLAVDYEDVKPDILVLGKALGGGVYPVSAALA 291

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DD VM  + PGTHGST+GGNPL C++A+ +LDV+ +E + ENAYKMGEI R ELSS  NK
Sbjct: 292 DDSVMLVIEPGTHGSTFGGNPLGCRVAIASLDVLEKEGISENAYKMGEIMRKELSSRINK 351

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K   ++   GL   +N ++++ +   E +DVC+++K+ GL+ KP  ++IIR +P L I 
Sbjct: 352 -KVVCEIRGKGL---LNAIVMNRN-YAEAWDVCLQLKEKGLLAKPTHDDIIRFAPPLIIN 406

Query: 244 EQELREGLDIIINTINTM 261
           EQEL E L+II+NTIN++
Sbjct: 407 EQELSESLEIIVNTINSI 424

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198438549|ref|XP_002131991.1| PREDICTED: similar to mitochondrial ornithine aminotransferase [Ciona intestinalis]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/259 (58%), Positives = 197/259 (76%), Gaps = 8/259 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TD  SY  FGP+MPG++IIPYND+ ALE +LK NPN  A+MVEPIQGEAG VVPD+GYL
Sbjct: 191 STDSDSYGGFGPYMPGFSIIPYNDLSALEVELK-NPNTAAYMVEPIQGEAGVVVPDEGYL 249

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           + VR LC+++NVL+IADEVQTGLGRTGKLLA  +E+VRPDI++LGKALSGG+YP+SAVLA
Sbjct: 250 RGVRDLCTKHNVLWIADEVQTGLGRTGKLLACDHENVRPDILVLGKALSGGMYPVSAVLA 309

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
            DEVM T+ PG HGSTYGGNPL CK+AM ALDV+LEEN+IEN+ ++G   RS LS  P N
Sbjct: 310 RDEVMLTIRPGQHGSTYGGNPLGCKVAMAALDVLLEENLIENSERLGRKTRSFLSELPTN 369

Query: 183 KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                 K+   GL   +N ++++ +     + VCI+++D GL+ KP  N+IIR +P L I
Sbjct: 370 ---VVAKVRGKGL---LNAMVINNTKEFNAWKVCIRLRDNGLLAKPTHNDIIRFAPPLCI 423

Query: 243 TEQELREGLDIIINTINTM 261
           T+++L E L II   I++ 
Sbjct: 424 TDEQLDESLAIISQVIHSF 442

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326672649|ref|XP_003199710.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 1 [Danio rerio]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 197/256 (76%), Gaps = 8/256 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP+SY+ FGP MPG+ ++PYND+ ALE  L+ +P++ AFMVEPIQGEAG VVPD GYL
Sbjct: 128 STDPSSYDGFGPFMPGFELVPYNDIPALEKALQ-DPHVAAFMVEPIQGEAGVVVPDAGYL 186

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           +KVR LC++YNVLFIADEVQTGL RTG+ LA+ +E VRPD+VILGKALSGG+YP+SAVL 
Sbjct: 187 QKVRELCTKYNVLFIADEVQTGLCRTGRRLAVDHEAVRPDLVILGKALSGGVYPVSAVLC 246

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDEVM T+ PG HGSTYGGNPLAC++A+ AL+V+ EEN+  NA +MG+I R+EL      
Sbjct: 247 DDEVMLTIKPGEHGSTYGGNPLACRVAIAALEVLEEENLAANAERMGQILRAEL------ 300

Query: 184 SKASFKLSSGGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
           +K   ++ SG   K  +N +I+  +   + + VC++++D GL+ KP   +IIRL+P L I
Sbjct: 301 NKLPREIVSGVRGKGLLNAIIIKETKDYDAWQVCLRLRDNGLLAKPTHGDIIRLAPPLTI 360

Query: 243 TEQELREGLDIIINTI 258
            EQE+RE ++II  TI
Sbjct: 361 NEQEVRECVEIISRTI 376

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195354226|ref|XP_002043600.1| GM16950 [Drosophila sechellia] gi|194127768|gb|EDW49811.1| GM16950 [Drosophila sechellia]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 195/258 (75%), Gaps = 8/258 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           + DPTSY  FGP MPG+ +I Y++V ALE  LK +PN+CAFMVEPIQGEAG VVP DGYL
Sbjct: 182 SNDPTSYEGFGPFMPGFELIEYDNVTALEESLK-DPNVCAFMVEPIQGEAGVVVPSDGYL 240

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LC++YNVL+IADEVQTGL RTGKLLA++YE V+PDI+ILGKALSGG+YP+SAVL 
Sbjct: 241 KKVRELCTKYNVLWIADEVQTGLARTGKLLAVNYEQVQPDILILGKALSGGMYPVSAVLC 300

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  + PG HGSTYGGNPL C++AM AL+V+ EE + ENA+KMGE+ R ELS+    
Sbjct: 301 NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGELLRKELST---L 357

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K    +  G  K  +N ++++     + ++VC+K+K+ GL+ KP   +IIR +P L I 
Sbjct: 358 PKDVVSVVRG--KGLLNAIVINQK--FDAWEVCLKLKENGLLAKPTHGDIIRFAPPLVIN 413

Query: 244 EQELREGLDIIINTINTM 261
           E ++RE +DII  TI +M
Sbjct: 414 ETQMRESIDIIRKTILSM 431

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195496181|ref|XP_002095584.1| GE22477 [Drosophila yakuba] gi|194181685|gb|EDW95296.1| GE22477 [Drosophila yakuba]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 195/258 (75%), Gaps = 8/258 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           + DP+SY  FGP MPG+ +I Y++V ALE  LK +PN+CAFMVEPIQGEAG VVP DGYL
Sbjct: 181 SNDPSSYEGFGPFMPGFELIEYDNVSALEESLK-DPNVCAFMVEPIQGEAGVVVPSDGYL 239

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LCS+YNVL+IADEVQTGL RTGKLLA++YE V+PDI+ILGKALSGGLYP+SAVL 
Sbjct: 240 KKVRELCSKYNVLWIADEVQTGLARTGKLLAVNYEQVQPDILILGKALSGGLYPVSAVLC 299

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  + PG HGSTYGGNPL C++AM AL+V+ EE + ENA+KMGE+ R ELS+    
Sbjct: 300 NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGELLRGELST---L 356

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K    +  G  K  +N ++  ++   + ++VC+K+K+ GL+ KP   +IIR +P L I 
Sbjct: 357 PKDVVSVVRG--KGLLNAIV--INQKFDAWEVCLKLKENGLLAKPTHGDIIRFAPPLIIN 412

Query: 244 EQELREGLDIIINTINTM 261
           E ++RE +DII  TI +M
Sbjct: 413 ETQMRESIDIIRKTILSM 430

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189526312|ref|XP_701334.3| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 2 [Danio rerio]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 197/256 (76%), Gaps = 8/256 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP+SY+ FGP MPG+ ++PYND+ ALE  L+ +P++ AFMVEPIQGEAG VVPD GYL
Sbjct: 193 STDPSSYDGFGPFMPGFELVPYNDIPALEKALQ-DPHVAAFMVEPIQGEAGVVVPDAGYL 251

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           +KVR LC++YNVLFIADEVQTGL RTG+ LA+ +E VRPD+VILGKALSGG+YP+SAVL 
Sbjct: 252 QKVRELCTKYNVLFIADEVQTGLCRTGRRLAVDHEAVRPDLVILGKALSGGVYPVSAVLC 311

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDEVM T+ PG HGSTYGGNPLAC++A+ AL+V+ EEN+  NA +MG+I R+EL      
Sbjct: 312 DDEVMLTIKPGEHGSTYGGNPLACRVAIAALEVLEEENLAANAERMGQILRAEL------ 365

Query: 184 SKASFKLSSGGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
           +K   ++ SG   K  +N +I+  +   + + VC++++D GL+ KP   +IIRL+P L I
Sbjct: 366 NKLPREIVSGVRGKGLLNAIIIKETKDYDAWQVCLRLRDNGLLAKPTHGDIIRLAPPLTI 425

Query: 243 TEQELREGLDIIINTI 258
            EQE+RE ++II  TI
Sbjct: 426 NEQEVRECVEIISRTI 441

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226471034|emb|CAX70598.1| ornithine aminotransferase [Schistosoma japonicum] gi|226471036|emb|CAX70599.1| ornithine aminotransferase [Schistosoma japonicum] gi|226487328|emb|CAX75529.1| ornithine aminotransferase [Schistosoma japonicum] gi|226487330|emb|CAX75530.1| ornithine aminotransferase [Schistosoma japonicum] gi|226487332|emb|CAX75531.1| ornithine aminotransferase [Schistosoma japonicum]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/259 (58%), Positives = 193/259 (74%), Gaps = 8/259 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP  Y+ FGP MPG+ I+PY+D++ALE +LK NPN CAFMVEPIQGEAG   P DGYL
Sbjct: 178 STDPACYSGFGPFMPGFVIVPYDDLNALEVELK-NPNTCAFMVEPIQGEAGVRTPSDGYL 236

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K VR LC++YNVLFIADE+QTGLGRTGK L +++EDVRPDIV+LGKALSGG+ PISAVLA
Sbjct: 237 KGVRKLCTKYNVLFIADEIQTGLGRTGKRLCVNHEDVRPDIVLLGKALSGGMLPISAVLA 296

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDEVM T+ PG HGSTYGGNPLAC++AM AL V+ EE + E A K+GEIFR+ELS     
Sbjct: 297 DDEVMLTIQPGEHGSTYGGNPLACRVAMAALRVLEEEGLAERAQKLGEIFRNELS---KL 353

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K+  +L  G  K  +N +++        +DVC+K++D GL+ KP  + IIRL+P L I 
Sbjct: 354 PKSVVELYRG--KGLLNAIVIRQG--FNAWDVCLKLRDHGLLAKPTHDTIIRLAPPLVIK 409

Query: 244 EQELREGLDIIINTINTMA 262
           E EL +  +I+   I +++
Sbjct: 410 EDELHKAAEIMHKVIGSLS 428

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|56756008|gb|AAW26182.1| SJCHGC01945 protein [Schistosoma japonicum]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/259 (58%), Positives = 193/259 (74%), Gaps = 8/259 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP  Y+ FGP MPG+ I+PY+D++ALE +LK NPN CAFMVEPIQGEAG   P DGYL
Sbjct: 187 STDPACYSGFGPFMPGFVIVPYDDLNALEVELK-NPNTCAFMVEPIQGEAGVRTPSDGYL 245

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K VR LC++YNVLFIADE+QTGLGRTGK L +++EDVRPDIV+LGKALSGG+ PISAVLA
Sbjct: 246 KGVRKLCTKYNVLFIADEIQTGLGRTGKRLCVNHEDVRPDIVLLGKALSGGMLPISAVLA 305

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DDEVM T+ PG HGSTYGGNPLAC++AM AL V+ EE + E A K+GEIFR+ELS     
Sbjct: 306 DDEVMLTIQPGEHGSTYGGNPLACRVAMAALRVLEEEGLAERAQKLGEIFRNELS---KL 362

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            K+  +L  G  K  +N +++        +DVC+K++D GL+ KP  + IIRL+P L I 
Sbjct: 363 PKSVVELYRG--KGLLNAIVIRQG--FNAWDVCLKLRDHGLLAKPTHDTIIRLAPPLVIK 418

Query: 244 EQELREGLDIIINTINTMA 262
           E EL +  +I+   I +++
Sbjct: 419 EDELHKAAEIMHKVIGSLS 437

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
FB|FBgn0022774	431	Oat "Ornithine aminotransferas	0.936	0.577	0.555	8.4e-74
UNIPROTKB|P04181	439	OAT "Ornithine aminotransferas	0.932	0.564	0.558	1.6e-72
UNIPROTKB|F1NMV3	438	OAT "Uncharacterized protein"	0.928	0.563	0.554	5.3e-72
UNIPROTKB|F1MYG0	439	OAT "Ornithine aminotransferas	0.932	0.564	0.562	5.3e-72
UNIPROTKB|Q3ZCF5	439	OAT "Ornithine aminotransferas	0.932	0.564	0.562	5.3e-72
MGI|MGI:97394	439	Oat "ornithine aminotransferas	0.932	0.564	0.550	6.7e-72
UNIPROTKB|E1BRW0	441	OAT "Uncharacterized protein"	0.932	0.562	0.550	1.8e-71
UNIPROTKB|F1SDP3	439	OAT "Uncharacterized protein"	0.932	0.564	0.546	2.3e-71
RGD|621724	439	Oat "ornithine aminotransferas	0.932	0.564	0.546	2.3e-71
UNIPROTKB|F1Q2A2	440	OAT "Uncharacterized protein"	0.932	0.563	0.546	2.1e-70

FB|FBgn0022774 Oat "Ornithine aminotransferase precursor" [Drosophila melanogaster (taxid:7227)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 144/259 (55%), Positives = 193/259 (74%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             + DP+SY  FGP MPG+ +I Y++V ALE  LK +PN+CAFMVEPIQGEAG VVP DGYL
Sbjct:   182 SNDPSSYEGFGPFMPGFELIEYDNVSALEESLK-DPNVCAFMVEPIQGEAGVVVPSDGYL 240

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             KKVR LC++YNVL+IADEVQTGL RTGKLLA+ YE V+PDI+ILGKALSGG+YP+SAVL 
Sbjct:   241 KKVRELCTKYNVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC 300

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             +D+VM  + PG HGSTYGGNPL C++AM AL+V+ EE + ENA+KMG++ R+ELS+ P +
Sbjct:   301 NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELSTLPKD 360

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N ++++     + ++VC+++K+ GL+ KP   +IIR +P L I
Sbjct:   361 VVSVVRGKGL------LNAIVINQK--FDAWEVCLRLKENGLLAKPTHGDIIRFAPPLVI 412

Query:   243 TEQELREGLDIIINTINTM 261
              E ++RE +DII  TI +M
Sbjct:   413 NETQMRESIDIIRKTILSM 431

GO:0005759 "mitochondrial matrix" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS;NAS

GO:0006591 "ornithine metabolic process" evidence=ISS;NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P04181 OAT "Ornithine aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 143/256 (55%), Positives = 189/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct:   247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct:   307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct:   367 VVTAVRGKGL------LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E ELRE ++II  TI
Sbjct:   421 KEDELRESIEIINKTI 436

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0034214 "protein hexamerization" evidence=IDA

GO:0005739 "mitochondrion" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=EXP

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1NMV3 OAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 142/256 (55%), Positives = 191/256 (74%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDP+SY+ FGP MPG+ +IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct:   188 STDPSSYDGFGPFMPGFELIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDKGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+++NVLFIADE+QTGL RTGK+LA+ +E+VRPDI++LGKALSGGLYP+SAVL 
Sbjct:   247 TGVRDLCTKHNVLFIADEIQTGLARTGKMLAVDHENVRPDIILLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPAN 182
             DDEVM T+ PG HGSTYGGNPLAC++A+ AL+VI EE +++NA  MG I R+EL  +P++
Sbjct:   307 DDEVMLTIKPGEHGSTYGGNPLACRVALAALEVIEEEGLVKNAEIMGNILRNELMKTPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++      + + VC++++D GL+ KP   +IIRL+P L I
Sbjct:   367 IVTCVRGRGL------LNAIVIRTKDY-DAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI 419

Query:   243 TEQELREGLDIIINTI 258
              E E+RE ++II  TI
Sbjct:   420 KEDEIRECIEIIHKTI 435

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1MYG0 OAT "Ornithine aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 144/256 (56%), Positives = 187/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG+ IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFEIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+Q+ VLFIADE+QTGL RTG+ LAI +E+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct:   247 VGVRELCTQHQVLFIADEIQTGLARTGRWLAIDHENVRPDIVLLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R+EL   P++
Sbjct:   307 DDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGIILRNELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct:   367 VVTTVRGKGL------LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E E+ E ++II  TI
Sbjct:   421 KEDEILEAVEIINKTI 436

GO:0005739 "mitochondrion" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q3ZCF5 OAT "Ornithine aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 144/256 (56%), Positives = 187/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG+ IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFEIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+Q+ VLFIADE+QTGL RTG+ LAI +E+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct:   247 VGVRELCTQHQVLFIADEIQTGLARTGRWLAIDHENVRPDIVLLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R+EL   P++
Sbjct:   307 DDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGIILRNELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct:   367 VVTTVRGKGL------LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E E+ E ++II  TI
Sbjct:   421 KEDEILEAVEIINKTI 436

GO:0034214 "protein hexamerization" evidence=ISS

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:97394 Oat "ornithine aminotransferase" [Mus musculus (taxid:10090)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 141/256 (55%), Positives = 187/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG+  IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFETIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+++ VLFIADE+QTGL RTG+ LA+ +E+VRPD+V+LGKALSGGLYP+SAVL 
Sbjct:   247 TGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDMVLLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R EL   P++
Sbjct:   307 DDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIRL+P L I
Sbjct:   367 VVTSVRGKGL------LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E E+RE ++II  TI
Sbjct:   421 KEDEIRESVEIINKTI 436

GO:0003824 "catalytic activity" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0034214 "protein hexamerization" evidence=ISO

UNIPROTKB|E1BRW0 OAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 142/258 (55%), Positives = 191/258 (74%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDP+SY+ FGP MPG+ +IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct:   188 STDPSSYDGFGPFMPGFELIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDKGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+++NVLFIADE+QTGL RTGK+LA+ +E+VRPDI++LGKALSGGLYP+SAVL 
Sbjct:   247 TGVRDLCTKHNVLFIADEIQTGLARTGKMLAVDHENVRPDIILLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPAN 182
             DDEVM T+ PG HGSTYGGNPLAC++A+ AL+VI EE +++NA  MG I R+EL  +P++
Sbjct:   307 DDEVMLTIKPGEHGSTYGGNPLACRVALAALEVIEEEGLVKNAEIMGNILRNELMKTPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSA--ILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
                             +N +++        + + VC++++D GL+ KP   +IIRL+P L
Sbjct:   367 IVTCVRGRGL------LNAIVIRKPKPQYYDAWKVCLRLRDNGLLAKPTHGDIIRLAPPL 420

Query:   241 NITEQELREGLDIIINTI 258
              I E E+RE ++II  TI
Sbjct:   421 VIKEDEIRECIEIIHKTI 438

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1SDP3 OAT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 140/256 (54%), Positives = 187/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG+ IIPY+D+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFEIIPYSDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+Q+ VLFIADE+QTGL RTG+ LA+ +E+VRPDI++LGKALSGGLYP+SAVL 
Sbjct:   247 VGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R+EL   P++
Sbjct:   307 DDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGTILRNELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct:   367 IVTTVRGKGL------LNAIVIRETKDYDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E E+ E ++II  T+
Sbjct:   421 KEDEILESVEIINKTV 436

GO:0005739 "mitochondrion" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

RGD|621724 Oat "ornithine aminotransferase" [Rattus norvegicus (taxid:10116)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 140/256 (54%), Positives = 187/256 (73%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDPTSY+ FGP MPG+  IPYND+ ALE  L+ +PN+ AFMVEPIQGEAG +VPD GYL
Sbjct:   188 STDPTSYDGFGPFMPGFETIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVIVPDPGYL 246

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+++ VLFIADE+QTGL RTG+ LA+ +E+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct:   247 TGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDIVLLGKALSGGLYPVSAVLC 306

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EE++ ENA KMG I R EL   P++
Sbjct:   307 DDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEEHLAENADKMGAILRKELMKLPSD 366

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIRL+P L I
Sbjct:   367 VVTAVRGKGL------LNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI 420

Query:   243 TEQELREGLDIIINTI 258
              E E+RE ++II  TI
Sbjct:   421 KEDEIRESVEIINKTI 436

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=TAS

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006591 "ornithine metabolic process" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0034214 "protein hexamerization" evidence=ISO;ISS

GO:0055129 "L-proline biosynthetic process" evidence=IEA

UNIPROTKB|F1Q2A2 OAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 140/256 (54%), Positives = 186/256 (72%)

Query:     4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
             +TDP+SY+ FGP MPG+ IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct:   189 STDPSSYDGFGPFMPGFEIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 247

Query:    64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
               VR LC+Q+ VLFIADE+QTGL RTG+ LA+ +E VRPD+V+LGKALSGGLYP+SAVL 
Sbjct:   248 MGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHEGVRPDVVLLGKALSGGLYPVSAVLC 307

Query:   124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
             DDE+M T+  G HGSTYGGNPL C++A+ AL+V+ EEN+ ENA KMG I R+EL   P++
Sbjct:   308 DDEIMLTIKAGEHGSTYGGNPLGCRVAIAALEVLEEENLGENAEKMGIILRNELMKLPSD 367

Query:   183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                             +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct:   368 IVTAVRGKGL------LNAIVIRETKDYDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 421

Query:   243 TEQELREGLDIIINTI 258
              E E++E ++II  TI
Sbjct:   422 KEDEIQESVEIINKTI 437

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6LFH8	OAT_PLAF7	2, ., 6, ., 1, ., 1, 3	0.4901	0.9398	0.6038	yes	N/A
Q8EP32	OAT_OCEIH	2, ., 6, ., 1, ., 1, 3	0.4268	0.9022	0.6030	yes	N/A
P04182	OAT_RAT	2, ., 6, ., 1, ., 1, 3	0.5585	0.9323	0.5649	yes	N/A
P04181	OAT_HUMAN	2, ., 6, ., 1, ., 1, 3	0.5703	0.9323	0.5649	yes	N/A
Q3ZCF5	OAT_BOVIN	2, ., 6, ., 1, ., 1, 3	0.5686	0.9360	0.5671	yes	N/A
Q89RB7	OAT_BRAJA	2, ., 6, ., 1, ., 1, 3	0.4357	0.9360	0.6163	yes	N/A
Q54JP5	OAT_DICDI	2, ., 6, ., 1, ., 1, 3	0.4807	0.9548	0.6105	yes	N/A
Q9VW26	OAT_DROME	2, ., 6, ., 1, ., 1, 3	0.5658	0.9398	0.5800	yes	N/A
Q49W96	OAT2_STAS1	2, ., 6, ., 1, ., 1, 3	0.4189	0.9022	0.6060	yes	N/A
P29758	OAT_MOUSE	2, ., 6, ., 1, ., 1, 3	0.5607	0.9360	0.5671	yes	N/A
C4L2E7	OAT_EXISA	2, ., 6, ., 1, ., 1, 3	0.4285	0.9060	0.6025	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	266
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	1e-129
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-127
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	1e-116
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	5e-95
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	1e-86
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-85
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	3e-84
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-82
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	5e-74
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	2e-73
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-67
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-60
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	6e-60
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	9e-60
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	7e-59
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	1e-58
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	2e-56
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	1e-54
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	2e-53
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	8e-52
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	1e-51
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	1e-50
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	2e-50
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	2e-48
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-47
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	7e-46
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	4e-44
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-42
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	7e-42
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	9e-42
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	5e-41
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-40
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	1e-40
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	2e-40
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	3e-40
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	4e-40
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	2e-39
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	3e-39
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	5e-39
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	2e-38
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	2e-38
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	4e-38
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	5e-38
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	2e-37
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	4e-36
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	4e-35
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	6e-35
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	7e-35
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	8e-34
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	2e-33
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	1e-32
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	1e-32
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	4e-32
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	5e-32
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	4e-31
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	7e-31
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	3e-30
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	4e-30
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	5e-30
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	3e-29
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	3e-29
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	7e-29
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	1e-28
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	1e-28
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	2e-27
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	3e-27
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	8e-27
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	1e-26
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	3e-26
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	6e-26
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	2e-25
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	2e-25
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	6e-24
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	8e-24
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	1e-22
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	2e-19
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	1e-18
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	3e-18
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	4e-17
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	7e-15
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	9e-13
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	1e-05
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-05
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	2e-05
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	4e-04
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	4e-04
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	6e-04

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  371 bits (955), Expect = e-129
 Identities = 148/257 (57%), Positives = 194/257 (75%), Gaps = 7/257 (2%)

Query: 5   TDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYL 63
           TDP S   FGP++PG+  IPYN+++ALE  L+   PN+CAF+VEPIQGEAG VVPDDGYL
Sbjct: 150 TDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYL 209

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           KKVR LC+++NVL IADE+QTGLGRTGKLL + +E+V+PDIV+LGKALSGG+YP+SAVLA
Sbjct: 210 KKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLA 269

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DD+VM T+ PG HGSTYGGNPLAC +A+ AL+V+ EE + ENA K+GEIFR +L      
Sbjct: 270 DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLK--KLP 327

Query: 184 SKASFKLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                ++   GL   +N +++  S      +D+C+K+K+ GL+ KP   NIIRL+P L I
Sbjct: 328 KPIITEVRGRGL---LNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVI 384

Query: 243 TEQELREGLDIIINTIN 259
           TE++L EGL+II   I+
Sbjct: 385 TEEQLDEGLEIIKKVID 401

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  365 bits (940), Expect = e-127
 Identities = 142/262 (54%), Positives = 192/262 (73%), Gaps = 4/262 (1%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP  YN FGP +PG+ ++ YNDV+ALE  L+ +PN+ AF+VEPIQGEAG +VPDDGYL
Sbjct: 143 STDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYL 201

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K+V  LC +YNVL I DE+QTGLGRTGKLLA  +E V+PDIV+LGKALSGGLYPISAVLA
Sbjct: 202 KQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLA 261

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D+VM  + PG HGSTYGGNPLAC +A+ AL+V+ EE + ENA ++GE+FR  L     K
Sbjct: 262 NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKK 321

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
           S    ++   GL   +N ++   S  +  +D+C+K+K+ GL+ KP  +NIIR +P L IT
Sbjct: 322 SPWVKEIRGKGL---LNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVIT 378

Query: 244 EQELREGLDIIINTINTMAAKK 265
           +++L + L+II   + +  + K
Sbjct: 379 KEQLDQALEIIKKVLKSFDSNK 400

Length = 400

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  340 bits (874), Expect = e-116
 Identities = 126/268 (47%), Positives = 178/268 (66%), Gaps = 11/268 (4%)

Query: 6   DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLK 64
           D  +   FGP +PG+  + + D+DALE   + +   I AF+ EPIQGEAG V+P DGYLK
Sbjct: 189 DNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLK 248

Query: 65  KVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD 124
            VR LCS++NVL IADE+QTGL RTGK+LA  +E+VRPD+VILGKAL GG+ P+SAVLAD
Sbjct: 249 AVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLAD 308

Query: 125 DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPANK 183
            +VM  + PG HGST+GGNPLA  +AM AL V+ +E + E + K+G+  R +L       
Sbjct: 309 KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQF 368

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSPALN 241
            K   ++   GL   +N ++L+   +  V  YDVC+K+K+ GL+ KP  + IIRL+P L+
Sbjct: 369 PKLIKEVRGRGL---LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLS 425

Query: 242 ITEQELREGL----DIIINTINTMAAKK 265
           I+E EL+E      D++ + +  + + K
Sbjct: 426 ISEDELQECSKALSDVLEHDLPKLQSAK 453

Length = 474

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  284 bits (729), Expect = 5e-95
 Identities = 105/268 (39%), Positives = 152/268 (56%), Gaps = 18/268 (6%)

Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
            T  P     FGP +PG+  +P+ND++ALEA +  + +  A +VEPIQGE G +     +
Sbjct: 149 ATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAI--DEDTAAVIVEPIQGEGGVIPAPPEF 206

Query: 63  LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
           LK +R LC ++  L I DEVQTGLGRTGKL A  +  V PDI+ L KAL GG +PI A+L
Sbjct: 207 LKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG-FPIGAML 265

Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
           A +E+     PG HGST+GGNPLAC +A+  L+V+LEE ++EN  + GE     L     
Sbjct: 266 ATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRL----R 321

Query: 183 KSKASFKLSSG----GLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
           + K  + L       GL      +I + +       D+   +++ G++  P   N+IR  
Sbjct: 322 ELKRRYPLVKEVRGRGL------MIGIELKEPYRARDIVRALREEGVLVLPAGPNVIRFL 375

Query: 238 PALNITEQELREGLDIIINTINTMAAKK 265
           P L ITE+E+ E LD +   +   +A+ 
Sbjct: 376 PPLVITEEEIDEALDALERALAAASARV 403

Length = 404

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  263 bits (673), Expect = 1e-86
 Identities = 116/268 (43%), Positives = 160/268 (59%), Gaps = 30/268 (11%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDP +   FGP  PG+ ++P+ D +ALEA +   PN  AF+VEPIQGEAG ++P  GY 
Sbjct: 153 STDPDARGGFGPFTPGFRVVPFGDAEALEAAI--TPNTVAFLVEPIQGEAGVIIPPAGYF 210

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
            +VR LC+  NV  I DE+QTGLGRTGKLLA  +E +  D+ ++GKALSGG YP+SAVL+
Sbjct: 211 TRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLS 270

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           + EV+G L PG HGST+GGNPLAC +A  AL V+ EE MIENA +MG  F   L S  +N
Sbjct: 271 NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSN 330

Query: 183 KSKA----------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN 232
             +             +  +GG ++                  C  +K+ GL+ K   ++
Sbjct: 331 IVREVRGRGLMLAVELEPEAGGARQ-----------------YCEALKERGLLAKDTHDH 373

Query: 233 IIRLSPALNITEQELREGLDIIINTINT 260
            IRL+P L IT +++   L+ I   +  
Sbjct: 374 TIRLAPPLVITREQVDWALEQIAKVLAH 401

Length = 401

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  260 bits (667), Expect = 2e-85
 Identities = 110/277 (39%), Positives = 146/277 (52%), Gaps = 34/277 (12%)

Query: 3   ITTDPTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSNP-NICAFMVEPIQ 50
           +T        FGP +PG   +PY            D++ALE  L+ +P  + A +VEPIQ
Sbjct: 142 LTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQ 201

Query: 51  GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKA 110
           GE G +VP  GYLK +R LC ++ +L IADEVQTG GRTGK+ A  +  V PDIV LGK 
Sbjct: 202 GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKG 261

Query: 111 LSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168
           L GGL P+ AVL  +E+M      PG HG T+GGNPLAC  A+  L+V+ EE ++ENA +
Sbjct: 262 LGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320

Query: 169 MGEIFRSELSSPANKSK-----------ASFKLSSGGLKKSINTLILSVSAILEVYDVCI 217
           +GE  R  L   A K                +L      K                 +  
Sbjct: 321 LGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP--------PDKELAAKIIK 372

Query: 218 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
              + GL+ +P   N+IRL P L ITE+E+ EGLD +
Sbjct: 373 AALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDAL 409

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  256 bits (657), Expect = 3e-84
 Identities = 110/252 (43%), Positives = 157/252 (62%), Gaps = 11/252 (4%)

Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
           ++++      FGP +PG   IPY D++AL+A +   PN  AF+VEPIQGEAG  +P +G+
Sbjct: 151 LSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI--TPNTAAFLVEPIQGEAGINIPPEGF 208

Query: 63  LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
           LK  R LC + NVLFIADE+QTGLGRTGKL A  +++V PD+ ILGKAL GG++PIS V 
Sbjct: 209 LKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVA 268

Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
           A+ +++G   PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE F+ +L    N
Sbjct: 269 ANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDN 328

Query: 183 KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                 K   G        L + V         C  +K+ GL+ K     +IR +P L I
Sbjct: 329 P---MIKEVRG------RGLFIGVELNEPARPYCEALKEEGLLCKETHETVIRFAPPLVI 379

Query: 243 TEQELREGLDII 254
           T++EL    + I
Sbjct: 380 TKEELDWAFEKI 391

Length = 396

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  252 bits (647), Expect = 1e-82
 Identities = 97/251 (38%), Positives = 145/251 (57%), Gaps = 12/251 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P + G+  +P+ND++AL+A +       A M+EPIQGE G    D  YL+ +R LC +
Sbjct: 157 FEPLVEGFIYVPFNDIEALKAAI--TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDE 214

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
             +L I DEVQTG+GRTGKL A  +  + PDI+ L K L GG+ PI AVLA ++V     
Sbjct: 215 NGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFT 273

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HGST+GGNPLAC  A+  +++I EE ++ENA ++GE  R++L     K     K   
Sbjct: 274 PGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEK-YPGIKEVR 332

Query: 193 G-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
           G GL   +  + L   A     ++  K  + GL+     +N++RL P L I+++E+ E +
Sbjct: 333 GLGL---MIGIELDRPAA----EIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAV 385

Query: 252 DIIINTINTMA 262
           D +   +  + 
Sbjct: 386 DRLEEVLKELL 396

Length = 396

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  230 bits (589), Expect = 5e-74
 Identities = 97/256 (37%), Positives = 146/256 (57%), Gaps = 12/256 (4%)

Query: 1   MLITTDPTSYNE-FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD 59
            +       Y E FGP +PG++ +P+ D++AL+A +   PN  A ++EPIQGE G     
Sbjct: 137 TIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI--TPNTAAILIEPIQGEGGIRPAP 194

Query: 60  DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
           D +LK +R LC +  +L I DEVQ G+GRTGKL A  +  V PDI+ + K + GG +P+ 
Sbjct: 195 DEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLG 253

Query: 120 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
           A LA +E    + PGTHGSTYGGNPLA  +    LDVIL    ++N  +MG   + +L  
Sbjct: 254 ACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG 313

Query: 180 PANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSP 238
             ++     +   G G       L+L +  ++   D+   ++D GL+T    +N++RL P
Sbjct: 314 LVDRFPDVIEEVRGKG-------LLLGLKCVVPNRDLVQALRDEGLLTVGAGDNVVRLLP 366

Query: 239 ALNITEQELREGLDII 254
            L ITE+E+ E L+ +
Sbjct: 367 PLIITEEEIDEALERL 382

Length = 389

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  227 bits (581), Expect = 2e-73
 Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 13/190 (6%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEA------------KLKSNPNICAFMVEP 48
           + +T        FGP +PG   +PY D++A E             K   + NI A +VEP
Sbjct: 126 LSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAVIVEP 185

Query: 49  IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 108
           IQGE G V P  G+L  +R +C ++ VL IADEVQTG GRTGKL A  +  V PDI+ L 
Sbjct: 186 IQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIMTLA 245

Query: 109 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168
           KAL+GG  P+SAVLA  E+M    PG+HG T+GGNPLAC  A+  LD+I +EN+++NA +
Sbjct: 246 KALTGG-LPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNAQE 304

Query: 169 MGEIFRSELS 178
            G+  R  L 
Sbjct: 305 KGDYLRKGLL 314

Length = 338

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  213 bits (545), Expect = 1e-67
 Identities = 89/242 (36%), Positives = 133/242 (54%), Gaps = 11/242 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P +PG++  PYND+++L+  +       A +VEPIQGE G       +LK +R +C  
Sbjct: 145 FEPLVPGFSYAPYNDIESLKKAIDDE--TAAVIVEPIQGEGGVNPASAEFLKALREICKD 202

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
            + L I DEVQTG+GRTGK  A  +  + PDI+ L K L GG+ PI A LA +EV     
Sbjct: 203 KDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFT 261

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HGST+GGNPLAC  A+  L+VI +E ++EN  + G+ F+  L     K+  + ++  
Sbjct: 262 PGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEE-LGKNYPNKEVRG 320

Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
            G       L+L +       D+  K  + GL+       ++R  P L IT++E+ E + 
Sbjct: 321 KG-------LMLGIELEAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVS 373

Query: 253 II 254
            +
Sbjct: 374 AL 375

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  197 bits (504), Expect = 1e-60
 Identities = 99/285 (34%), Positives = 141/285 (49%), Gaps = 62/285 (21%)

Query: 13  FGPHMPGYNIIPYND--------------------VDALEAKLKSNP-NICAFMVEPIQG 51
           FGP  PG   +PY +                    ++     L+  P  + A ++EPIQG
Sbjct: 174 FGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQG 233

Query: 52  EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKAL 111
           E G +VP  G+LK +R LC ++ +L IADEVQTG GRTGK+ A  +  V PDIV L K+L
Sbjct: 234 EGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSL 293

Query: 112 SGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
            GGL P+SAV+   E+M    PG HG T+GGNP+AC  A+  LDVI EEN++E A ++GE
Sbjct: 294 GGGL-PLSAVVGRAEIM-DWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGE 351

Query: 172 IFRSELSSPA--------------------NKSKASFKLSSGGLKKSINTLILSVSAILE 211
             R  L                         K + + +  +    K              
Sbjct: 352 YLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAK-------------- 397

Query: 212 VYDVCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
              +  +  + GL+  T     N++R+ P L I+++EL EGLDI+
Sbjct: 398 ---IVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDIL 439

Length = 447

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  194 bits (495), Expect = 6e-60
 Identities = 94/252 (37%), Positives = 136/252 (53%), Gaps = 11/252 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P   G   +PY DVDAL A +  + +  A  +EPIQGEAG V P  GYL   R +  +
Sbjct: 158 FEPLPGGVEHVPYGDVDALAAAV--DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR 215

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           +  L + DEVQTG+GRTG   A  ++ V PD+V L K L GGL PI A LA       L 
Sbjct: 216 HGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGGL-PIGACLAFGPAADLLT 274

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HGST+GGNP+AC  A+  LD I  E ++ENA ++GE  R+ + +  +      +   
Sbjct: 275 PGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHPLVDHVRGR- 333

Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
            GL   I  L   V+  +E        ++AG +   ++ ++IRL+P L IT+ ++   + 
Sbjct: 334 -GLLLGI-VLTAPVAKAVEAA-----AREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVA 386

Query: 253 IIINTINTMAAK 264
            +   ++  AA 
Sbjct: 387 ALPAILDAAAAA 398

Length = 398

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  193 bits (494), Expect = 9e-60
 Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 18/246 (7%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FGP       +P+ND+ A++A +  + + CA +VEPIQGE G +     +L+ +R LC Q
Sbjct: 159 FGPKPADITHVPFNDLAAVKAVI--DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQ 216

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           +N L I DEVQTG+GRTG L A  +  V PDI+   KAL GG +PI A+L   E+     
Sbjct: 217 HNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFK 275

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
            GTHGSTYGGNPLAC +A    D+I    ++E      + F   L     K    + + S
Sbjct: 276 VGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL----QKINQKYGVFS 331

Query: 193 GGLKKSINTLILSVSAIL-EVY-----DVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
                 I  + L + A L   Y     D      + G++      +++R +P+L I E +
Sbjct: 332 -----EIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEAD 386

Query: 247 LREGLD 252
           + EGL 
Sbjct: 387 IDEGLA 392

Length = 403

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  192 bits (491), Expect = 7e-59
 Identities = 99/278 (35%), Positives = 141/278 (50%), Gaps = 42/278 (15%)

Query: 13  FGPHMPGYNIIPYND------------------VDALEAKLKSN---PN-ICAFMVEPIQ 50
           F P MPG   +PY +                  +D +E  L      P  + A +VEPIQ
Sbjct: 172 FFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQ 231

Query: 51  GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKA 110
           GE G VVP   + K++R L  +Y +L I DEVQTG+GRTGK+ AI +  V PDI+ L KA
Sbjct: 232 GEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKA 291

Query: 111 LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170
           ++GGL P+ AV+   E+M  L PG+H +T+GGNP+A   A+  L+ + EE ++ENA K+G
Sbjct: 292 IAGGL-PLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLG 348

Query: 171 EIFRSELSSPANKSKASFKLSSGGL---------KKSINTLILSVSAILEVYDVCIKMKD 221
           E  R EL     K +    +   GL         +K  +  +           V  +   
Sbjct: 349 EYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRD--------KVLYEAFK 400

Query: 222 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259
            GL+      + IR+ P L ITE+E   GL+I+   I 
Sbjct: 401 RGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK 438

Length = 441

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  192 bits (490), Expect = 1e-58
 Identities = 87/252 (34%), Positives = 127/252 (50%), Gaps = 19/252 (7%)

Query: 27  DVDALEAKLKSN--PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
             D LEA +  +    I AF+VEP+  G  G +VP  GYLK+VR +C +Y +L IADEV 
Sbjct: 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA 258

Query: 84  TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGS 138
           TG GRTGK+ A  +  + PDI+ L K L+GG  P+SAVL  D +      G      HG 
Sbjct: 259 TGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGH 318

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG----- 193
           TY GNPLAC  A+  LD++ EE+++E   ++G   ++ L   A           G     
Sbjct: 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGL-QAALADHPLVGDVRGLGLIG 377

Query: 194 --GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
              L     T     + +     V     + GL+ +P+  ++I L P L IT +E+ E +
Sbjct: 378 AIELVADKATKTPFEARVGAR--VRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELV 434

Query: 252 DIIINTINTMAA 263
           D +   ++   A
Sbjct: 435 DALREALDETLA 446

Length = 449

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  185 bits (472), Expect = 2e-56
 Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 18/246 (7%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P   G    PYND+ A +A +  +   CA +VEPIQGE G V  D  +LK +R LC +
Sbjct: 154 FAPLPGGIKHAPYNDLAAAKALI--SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR 211

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           +N L I DEVQTG+GRTG+L A  +  V PDI+   KAL GG +PI A+L   E+   L 
Sbjct: 212 HNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLK 270

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
            GTHG+TYGGNPLAC +A   LD++    ++    +  ++F   L     K  A + + S
Sbjct: 271 VGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL----EKINARYNVFS 326

Query: 193 GGLKKSINTLILSVSAIL------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
                 I    L + A+L      +         + G++      N++R +P+L I++ +
Sbjct: 327 -----EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDD 381

Query: 247 LREGLD 252
           + EGL 
Sbjct: 382 IDEGLA 387

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  180 bits (458), Expect = 1e-54
 Identities = 86/248 (34%), Positives = 137/248 (55%), Gaps = 14/248 (5%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FGP +PG+  +P+ND+ AL+  +  N  + A M+E +QGE G +  D  +L++V+ LC +
Sbjct: 142 FGPLLPGFTHVPFNDIKALKEVM--NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK 199

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           +  L I DEVQTG+GRTG L A     + PDIV + K L  G+ P+ A++   E+     
Sbjct: 200 FGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNGI-PVGAMIGKKELGTAFG 258

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG+HGST+GGNPLA   A   L VI + + +E   + GE F  +L           +L  
Sbjct: 259 PGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE---------ELEH 309

Query: 193 GGLKKSI--NTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
               K+I    L++ +    EV  V  ++++ GL+      N+IRL P L +T++EL + 
Sbjct: 310 LECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQA 369

Query: 251 LDIIINTI 258
           + ++   +
Sbjct: 370 VYLLKKVL 377

Length = 377

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  179 bits (455), Expect = 2e-53
 Identities = 88/261 (33%), Positives = 142/261 (54%), Gaps = 14/261 (5%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRA 68
           F P +PG+  +P+ +++A+   L    K+  ++ A ++EPIQGE G ++P +GYL  VR 
Sbjct: 200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRK 259

Query: 69  LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
           LC ++  L I DEVQTG+GRTGK+ A  +E+V+PDI+ L KAL GG+ PI A +A +EV 
Sbjct: 260 LCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVF 319

Query: 129 GTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKA 186
             L   P  H +T+GGNPLAC  A+  ++V+LE+N+   A + G+         A +   
Sbjct: 320 SVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPD 379

Query: 187 SFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN--IIRLSPALNIT 243
             + + G G+  +I  +   +      Y+   +M    ++     NN   IR+ P L +T
Sbjct: 380 LVQEARGKGMLMAIEFVDNEIG-----YNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLT 434

Query: 244 EQELREGLDIIINTINTMAAK 264
            ++  + L      +  M   
Sbjct: 435 IEQCEQVLKAARKALAAMRVS 455

Length = 459

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  174 bits (442), Expect = 8e-52
 Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 14/247 (5%)

Query: 26  NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
            D+++L     +   + A ++EP+ GE G +VP   +LKK+R +C ++ +L I DEVQTG
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG 252

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL 145
            GRTG+  A     V PDI+ + K ++ GL P+SAV+A  E+M     G+HG+T+GGNP+
Sbjct: 253 FGRTGEWFAAQTFGVVPDIMTIAKGIASGL-PLSAVVASKELMEQWPLGSHGTTFGGNPV 311

Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS 205
           AC  A+  L+VI EE +++NA +MG      L     K      +   GL   I   I+ 
Sbjct: 312 ACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIE--IVD 369

Query: 206 V------SAILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINT 257
                   A+ ++ D C+   + GL+     N  N++R+ P L +T++E+ EGLDI+   
Sbjct: 370 PDGEPDGDAVEKILDKCL---EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEA 426

Query: 258 INTMAAK 264
           +    AK
Sbjct: 427 LTEYEAK 433

Length = 433

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  173 bits (440), Expect = 1e-51
 Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 24/245 (9%)

Query: 29  DALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
            ALEA L+ + + I AF+VEP+ QG  G       YL+K+R LC +Y VL IADE+ TG 
Sbjct: 183 AALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGF 242

Query: 87  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTY 140
           GRTGKL A  +  V PDI+ L K L+GG  P++A L  DE+              HG TY
Sbjct: 243 GRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTY 302

Query: 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG------ 194
            GNPLAC  A+ +LD++ EE+ +E   ++    R+ L +P         +   G      
Sbjct: 303 TGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGL-APLRDHPGVADVRVLGAIGAVE 361

Query: 195 LKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
           L + +               +     + G++ +P+  N+I L P   IT++EL +    I
Sbjct: 362 LVRDVEP--------YIGAKIQQFFLERGVLLRPL-GNVIYLMPPYIITDEELEKLTAAI 412

Query: 255 INTIN 259
              I+
Sbjct: 413 KEAID 417

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  169 bits (431), Expect = 1e-50
 Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 20/255 (7%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P MPG   + Y +++A    ++      A  VEP+QGE G       +L+ +RALC +
Sbjct: 141 FEPLMPGVTFVEYGNLEAARKLIQKG-KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE 199

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
              L + DEVQ GLGRTG L A     V PDI+ L K L+GGL PI AVL  ++V   + 
Sbjct: 200 AGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGL-PIGAVLVTEKVASAIN 258

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HGST+ G PL C  A+  LD I +   + +  K GE  R  L           KL  
Sbjct: 259 PGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRR---------KLGG 309

Query: 193 GGLKKSINTLILSVSAILEV-----YDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQE 246
               K +  + L V   L+V      D C   +D+GL+       +++RL P L I+E E
Sbjct: 310 NPHVKEVRGVGLLVGIQLDVPAGPLVDAC---RDSGLLVLTAGKGDVVRLVPPLVISEAE 366

Query: 247 LREGLDIIINTINTM 261
           L + ++I+ + +  +
Sbjct: 367 LEQAVEILADCLPAL 381

Length = 382

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  169 bits (431), Expect = 2e-50
 Identities = 92/253 (36%), Positives = 134/253 (52%), Gaps = 20/253 (7%)

Query: 7   PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKV 66
           P    +F P  P      YND+++  A +  +   CA +VEPIQGE G +  D  +L+ +
Sbjct: 152 PKYSQDFAPLPPDIRHAAYNDLNSASALI--DDQTCAVIVEPIQGEGGVIPADKAFLQGL 209

Query: 67  RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDE 126
           R LC ++N L I DEVQTG+GRTG+L A  +  V PD++   KAL GG +PI A+L  ++
Sbjct: 210 RELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEK 268

Query: 127 VMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKA 186
               +  GTHG+TYGGNPLA  +A   L++I    M+    +  + F   L    N   A
Sbjct: 269 CASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINA 324

Query: 187 SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-------AGLVTKPISNNIIRLSPA 239
            +     GL   I  L L +  +L   +   K K        AG++      N++R +PA
Sbjct: 325 RY-----GLFSEIRGLGLLIGCVLNA-EYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPA 378

Query: 240 LNITEQELREGLD 252
           LNI+E+E+  GLD
Sbjct: 379 LNISEEEITTGLD 391

Length = 406

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  165 bits (420), Expect = 2e-48
 Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 18/224 (8%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           + A   EPIQG+AG +VP + Y KK++ +  ++ +L + DEVQ+GLGRTGK  AI +  V
Sbjct: 205 VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
            PDI+ LGK L GGL PISA +   E+M +L P  H  T  GNP+A   A+  ++ I E+
Sbjct: 265 EPDIITLGKPLGGGL-PISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK 323

Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS----------AIL 210
           N+++ A K+G   +  L     + K   +L   G  + I  L++ V           A  
Sbjct: 324 NLLKRAEKLGNYTKKRLE----EMKKKHELI--GDVRGIG-LMIGVDLVKDRETKERAYE 376

Query: 211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
           E   V  +  + GL+    S N++R+ P L I ++ L EGLDI+
Sbjct: 377 EAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDIL 420

Length = 443

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  163 bits (413), Expect = 2e-47
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 6/176 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPD 59
           T  P     F P +PG++ + + D++A+   L    K+  ++ A ++EPIQGE G ++P 
Sbjct: 184 TAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243

Query: 60  DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
           +GYL  VRALC ++  L I DEVQTG+GRTGK+ A  +E V+PDI+ L KAL GG+ PI 
Sbjct: 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIG 303

Query: 120 AVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173
           A +A + V   L   P  H +T+GGNPLAC  A+  ++ +LE+N+   A   G+  
Sbjct: 304 ATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFL 359

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  158 bits (400), Expect = 7e-46
 Identities = 95/255 (37%), Positives = 137/255 (53%), Gaps = 19/255 (7%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           T  P     + P   G+  + +NDV+ALEA +    ++ A M+EPIQGE G +    G+L
Sbjct: 152 TAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGG-DVAAVMLEPIQGEGGVMPAAPGFL 210

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
            +VRALC Q++ L + DE+Q G+GRTG L A   E V PDIV L KAL GG +PI A+LA
Sbjct: 211 ARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLA 269

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
             +V  T+  G HG+T+GGNPLA  +A  AL  +    +  N  +     R+ L +  N 
Sbjct: 270 GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEA-LNA 328

Query: 184 SKASFKLSSG-GLKKSINTLILS------VSAILEVYDVCIKMKDAGLVTKPISNNIIRL 236
               F    G GL   +   +L+        AIL++        + GL+      +++R 
Sbjct: 329 EFGVFAQVRGRGL---MLGAVLAPAHAGQAGAILDL------AAEHGLLLLQAGPDVLRF 379

Query: 237 SPALNITEQELREGL 251
            PALN+T+ EL +GL
Sbjct: 380 VPALNLTDAELADGL 394

Length = 408

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  152 bits (386), Expect = 4e-44
 Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 12/243 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FG  +P ++   +ND+++++A +  N N  A M+E +QGE+G +  D  ++K +   C +
Sbjct: 140 FGDGVPHFSYAIFNDLNSVKALV--NKNTAAVMLELVQGESGVLPADKDFVKALADYCQE 197

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
             +L I DEVQTG+GRTGKL A  +  + PDI  L K L+ G+ P+ A+LA   + G   
Sbjct: 198 TGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFG 256

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPANKSKASFKLS 191
            G+HGST+GGN L+   A   LD++L    +E A + G   + +L  +  +K   +  + 
Sbjct: 257 YGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVT-TVR 315

Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
             G    I T    +S ++E        +D GL+      N+IRL P L +T++E+ +G+
Sbjct: 316 GLGYMIGIET-TADLSQLVE------AARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGI 368

Query: 252 DII 254
            I+
Sbjct: 369 AIL 371

Length = 375

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  149 bits (379), Expect = 2e-42
 Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 29  DALEAK-LKSNP-NICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           D LEAK L+  P  + AF+ E + G  AGAV P  GY K++R +C +Y VL I DEV  G
Sbjct: 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCG 245

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYG 141
           +GRTG L A   + V PD+V + K L  G  PI AVLA D +   +  G+    HG TY 
Sbjct: 246 MGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYL 305

Query: 142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
           G+  AC  A+    VI E+ ++ N    GE  R+ L
Sbjct: 306 GHATACAAALAVQRVIAEDGLLANVRARGEQLRARL 341

Length = 443

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  147 bits (374), Expect = 7e-42
 Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 40/255 (15%)

Query: 28  VDALEAKL-KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           +DALEA L K    I AF+VEP +QG  G +  D  YL ++R +C ++ VL I DE+ TG
Sbjct: 186 LDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATG 245

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---------MGTLVPGTH 136
            GRTG L A     V PDI+ L K L+GG  P++A L   E+             +   H
Sbjct: 246 FGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFM---H 302

Query: 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLK 196
             +Y  NPLAC  A  +LD+  +E ++E    +       L          F+     L 
Sbjct: 303 SPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGL--------EPFR----DLP 350

Query: 197 KSINTLIL-SVSAI-LEVYD-------VCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 247
              +  +L ++ A+ L+          +     + G++ +P+  N I L P   IT +E 
Sbjct: 351 GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL-GNTIYLMPPYIITAEE- 408

Query: 248 REGLDIIINTINTMA 262
              LD I + I  +A
Sbjct: 409 ---LDRITDAIVEVA 420

Length = 423

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  147 bits (374), Expect = 9e-42
 Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 11/222 (4%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+ A ++EPIQGE G +VP +G+L  +   C +  V+FIADEVQTG  RTG   A  +E 
Sbjct: 219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEG 278

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           + PD++   K ++GGL P+SAV    E+M    PG  G TYGGNP+AC  A+ A++ I E
Sbjct: 279 IVPDLITTAKGIAGGL-PLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEE 337

Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILE-----VYD 214
           ++++  A ++  +    L + A +      +   G   +I    L      E        
Sbjct: 338 DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIE---LVKPGTTEPDAELTKA 394

Query: 215 VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
           +      AG++  T     N+IRL P L I ++ LREGLD++
Sbjct: 395 LAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVL 436

Length = 443

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  146 bits (370), Expect = 5e-41
 Identities = 89/253 (35%), Positives = 125/253 (49%), Gaps = 35/253 (13%)

Query: 30  ALEAKLK-SNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
            LE  LK  +  I A +VEP +QG  G +    GYLK +R LC++YNVLFI DEV TG G
Sbjct: 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271

Query: 88  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTY 140
           RTGK+ A  +E+V PDI+  GK L+GG  PI+  +  DE+               HG +Y
Sbjct: 272 RTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSY 331

Query: 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSIN 200
            GNPL C +A+  L++  + N+IE   +  E   ++L       +  F L   G    I 
Sbjct: 332 TGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQL-------EDLFALKHVG---DIR 381

Query: 201 TLILSVSAILEV---------------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 245
            L L V   L                   VC + ++ G++T+P+ N I+ + P L  T  
Sbjct: 382 QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPP-LASTID 440

Query: 246 ELREGLDIIINTI 258
           EL E L I+   I
Sbjct: 441 ELDEMLRILYKAI 453

Length = 460

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  144 bits (365), Expect = 1e-40
 Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 27/230 (11%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+ A ++EP+QGE G +VP  G++  +   C ++ ++FIADEVQTG  RTG + A  +E 
Sbjct: 197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
             PD++   K+L+ GL P+S V    E+M    PG  G TY GNPLAC  A+  L +I  
Sbjct: 257 PEPDLITTAKSLADGL-PLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES 315

Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM 219
           E +IE A ++G +    L++     KA      G ++       L     +E+ D     
Sbjct: 316 EGLIERARQIGRLVTDRLTT----LKAVDP-RIGDVRG------LGAMIAVELVDPGTTE 364

Query: 220 KDAG---------------LVTKPISNNIIRLSPALNITEQELREGLDII 254
            DAG               L+T  +  NIIR  P L I ++ L EGLDI+
Sbjct: 365 PDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDIL 414

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  144 bits (366), Expect = 1e-40
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 26/229 (11%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           I A ++EP+QGE G +VP   ++++VR +CS++ +LF+ADE+QTG  RTGK  AI + DV
Sbjct: 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV 279

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
            PD++ + K+L  G+ PIS V+   E+M    PG  G TY G+PL C  A+  LD+I +E
Sbjct: 280 VPDLITVSKSLGAGV-PISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKE 338

Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK 220
           N+ + A ++G++  +      NK      +   G          ++ A   V D   K  
Sbjct: 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLG----------AMCAFELVQDRKTKEP 388

Query: 221 DAG---------------LVTKPISNNIIRLSPALNITEQELREGLDII 254
           D                 L++     N+IR+   L IT+++L EGL II
Sbjct: 389 DKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTII 437

Length = 451

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  144 bits (366), Expect = 2e-40
 Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 31/241 (12%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I A +VEP+ G AG +VP  GYL+++R +C ++ +L I DEV TG GR G   A     
Sbjct: 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFG 277

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 152
           V PDI+   K L+ G  P+ AV+A DE+    + G        HG TY  +P+AC   + 
Sbjct: 278 VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLA 337

Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV 212
            LD+  EE++ E A ++   F   +         S K    GL   I+   + + A +E+
Sbjct: 338 TLDIYREEDLFERAAELAPYFEDAV--------HSLK----GLPHVIDIRNIGLVAGIEL 385

Query: 213 -----------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
                      Y+  +K  + GL+ +  + + I LSP L I + ++ E +D + + +  +
Sbjct: 386 APRPGAPGARGYEAFMKCFEKGLLVR-YTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444

Query: 262 A 262
           A
Sbjct: 445 A 445

Length = 445

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  144 bits (364), Expect = 3e-40
 Identities = 82/246 (33%), Positives = 116/246 (47%), Gaps = 24/246 (9%)

Query: 41  ICAFMVEPIQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           I AF+ EPI G AG AVVP  GY K ++ +C  Y++LFIADEV TGLGRTG + A+ +  
Sbjct: 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----GSTYGGNPLACKLAMTALD 155
           V PDI+ LGK L  G  PI+A +  D VM  ++ G+     G T   NPL+   A+  L+
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE 319

Query: 156 VILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL---------KKSINTLILSV 206
            + + N+ E A + GE     L     +S     +   GL         KK+      S 
Sbjct: 320 YMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQ 379

Query: 207 SAILEVYDVCIKMKDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTIN 259
           +   E+          GL+  P            + ++P + IT  EL E L I   ++ 
Sbjct: 380 AVASELIS---VAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE 436

Query: 260 TMAAKK 265
            M  K 
Sbjct: 437 EMMQKG 442

Length = 447

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  142 bits (360), Expect = 4e-40
 Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 12/239 (5%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P +PG+     ND+ ++E  +       A M+EP+QGE G +     +++++RAL  Q
Sbjct: 154 FAPQVPGFPKAELNDIASVEKLI--TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQ 211

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           + +L I DEVQTG GRTG L A     + PDI+ LGK + GG+ P++A+LA  EV     
Sbjct: 212 HGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGGV-PLAALLAKAEV-AVFE 269

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
            G  G TY GNPL   + +  +  +L    +E     GE  + +L       + S +   
Sbjct: 270 AGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL------LELSEERGL 323

Query: 193 GGLKKS--INTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249
            G +    +  L+L      ++ +    M+  GL+      N++R  PALN+T +E+ +
Sbjct: 324 EGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQ 382

Length = 395

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  142 bits (359), Expect = 2e-39
 Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 25/233 (10%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I A ++E + G AG +VP  GYL  VR LC ++ ++ IADEV  G GRTGK  AI +  
Sbjct: 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGT----LVPGTHGSTYGGNPLACKLAMTALD 155
           V PD++   K ++ G  P+  V   + +  T      PG  G TY G+PLAC  A+  ++
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPG--GLTYSGHPLACAAAVATIN 331

Query: 156 VILEENMIENAYKMG-EIFRSELSSPANKSKASFKLSSGGL------------KKSINTL 202
            + EE ++ENA ++G E+    L   A +  +  ++   G+            ++ +   
Sbjct: 332 AMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPY 391

Query: 203 ILSVSAILEVYDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQELREGLDII 254
             S +A+  V   C   K+ GL+  P  N N I + P   +TE E+REGL I+
Sbjct: 392 GASSAAMAAVKAAC---KERGLL--PFVNGNRIHVVPPCTVTEDEVREGLAIL 439

Length = 451

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  141 bits (356), Expect = 3e-39
 Identities = 83/274 (30%), Positives = 125/274 (45%), Gaps = 40/274 (14%)

Query: 13  FGPHMPGYNIIPY----------NDVDALEAKLKSNPN---ICAFMVEPIQGEAGAVVPD 59
           FG  MP    +P+            + AL+   K++ +   + A ++EP+QGE G     
Sbjct: 158 FGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAP 217

Query: 60  DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
             ++K +R LC Q+ +L IADEVQTG  RTGKL A+ + +V  D+  + K L+GG  P++
Sbjct: 218 AAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGGF-PLA 276

Query: 120 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
           AV    E+M    PG  G TYGGNPL    A   LDVI EE++ E A ++G   +  L+S
Sbjct: 277 AVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLAS 336

Query: 180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG---------------L 224
                     +   G   ++           E  D    +  A                L
Sbjct: 337 LRETVPEIADIRGPGFMNAV-----------EFNDADSGLPSAEFANRVRLKALEKGLIL 385

Query: 225 VTKPISNNIIRLSPALNITEQELREGLDIIINTI 258
           +T  +  N+IR    + I +    E LDI+  +I
Sbjct: 386 LTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419

Length = 425

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  140 bits (356), Expect = 5e-39
 Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 24/276 (8%)

Query: 13  FGPHMPGYNIIPYND-------------VDALEAKLKS-------NPNICAFMVEPIQGE 52
           +GP +PG+  IP+ D             V+   A LK           +   ++E IQG+
Sbjct: 160 YGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGD 219

Query: 53  AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
            G + P  GY + +   C ++ +LF  D++Q GLGRTGK  +I + ++ PD++  GK+L+
Sbjct: 220 GGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLA 279

Query: 113 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172
           GG+ P+SA++   E+M +L    H  T G NP++C  A+  +D+I +E++++ + + GE 
Sbjct: 280 GGM-PMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEY 338

Query: 173 FRSELSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVCIKMKDAGLVTKPI 229
            R       +K      +   GL   I+ +    L          +C    + G+V   +
Sbjct: 339 ARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV 398

Query: 230 SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
           + N++R  P L IT ++L   L+ I      + A K
Sbjct: 399 AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGK 434

Length = 445

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  137 bits (347), Expect = 2e-38
 Identities = 92/256 (35%), Positives = 126/256 (49%), Gaps = 24/256 (9%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           T  P    +F P +PG+  IP+NDV+A  AK        A + EPIQGE G V   + ++
Sbjct: 128 TWKPKYREDFEPLVPGFKHIPFNDVEA--AKEAITKETAAVIFEPIQGEGGIVPAKEEFV 185

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K +R L      L IADEVQ+GL RTGK LAI +  V PDIV +GK +  G+ P+S  L 
Sbjct: 186 KTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNGV-PVSLTLT 243

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           + +V      G HGST+GGNPLACK     L ++  E ++E A   GE F         K
Sbjct: 244 NFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKA---GEKFIEI------K 290

Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
            +        GL   I  L   V   +E      ++++ G +       +IRL P L I+
Sbjct: 291 GERVVTTRGRGLMIGI-VLKKPVGKYVE------ELQNRGYLVHTAGQRVIRLLPPLIIS 343

Query: 244 EQELREGLDIIINTIN 259
           +  + E    I   IN
Sbjct: 344 KDTMEEAKSAIEGVIN 359

Length = 364

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  139 bits (352), Expect = 2e-38
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 20/230 (8%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           I AF+ EP+QG  G +VP   +   VR +C ++ +L IADEV TG GRTG         V
Sbjct: 214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV 273

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 153
           +PDI+ L K ++ G  P+ A + +  +               HG TY G+P+AC  A+  
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333

Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL---------KKSINTLIL 204
           LD+++ E++  NA K G      L     + +    +   GL         K +   +  
Sbjct: 334 LDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDP 393

Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
           S      V DV    ++ G++ +P    II LSP L I  +++   +D +
Sbjct: 394 SKGYANAVADVA---RENGVLVRPSGTKII-LSPPLVIQREDVDRIVDAL 439

Length = 449

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  138 bits (349), Expect = 4e-38
 Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 29/277 (10%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNP--------------------NICAFMVEPIQGE 52
           FG  +PG + +P+    A  A  K  P                     I A +VEP+ G 
Sbjct: 168 FGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGS 227

Query: 53  AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
            G ++P  GYL+++R +C ++ +L I DEV TG GR G   A  Y  V PD++   K L+
Sbjct: 228 TGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLT 287

Query: 113 GGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVILEENMIEN 165
            G  P+ AV    E+    + G        HG TY G+PLAC  A+  LD+   E ++  
Sbjct: 288 NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347

Query: 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV 225
           A ++   +   L S  + +     + + GL  ++             Y+V +K  + GL+
Sbjct: 348 AARLAPYWEDALHSLRD-APHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLM 406

Query: 226 TKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
            +  + +I+ LSP L I E ++ E  DI+   +    
Sbjct: 407 IR-YTGDILALSPPLIIEEAQIDELFDILAQALKETI 442

Length = 442

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  137 bits (347), Expect = 5e-38
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQTG GRTG L A+    
Sbjct: 199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V  D+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ 317

Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVC 216
           EN+++ A  +GE  +  L + A K      +   G   +I        S         + 
Sbjct: 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIV 377

Query: 217 IKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDII 254
            + +D GL+        N++R+   L I + ++R+GL+II
Sbjct: 378 ARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

Length = 425

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  137 bits (346), Expect = 2e-37
 Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 22/261 (8%)

Query: 14  GPHMPGY-NIIPYN------------DV---DALEAKLKSNPNICAFMVEPIQGEAGAVV 57
           GP M G   I P              DV   D LE  ++    I AF+ E ++      V
Sbjct: 187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRN-TDVQV 245

Query: 58  PDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 117
           P   Y K+VR +C ++NVL I DE+  G+GRTG+        + PDI+ +GK L GGL P
Sbjct: 246 PSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVP 305

Query: 118 ISAVLADDEVMGTLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 176
           I+A++  D+   T    + G  T+  +PL C  A+  ++VI +E ++E      +  R  
Sbjct: 306 IAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRER 364

Query: 177 LSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVCIKMKDAGLVTKPISNNI 233
           L     K      +   GL   +  +        A  E   V  +  + GL  K    N+
Sbjct: 365 LLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNV 424

Query: 234 IRLSPALNITEQELREGLDII 254
           I+LSP L IT +EL + L I+
Sbjct: 425 IQLSPPLIITREELTQALAIL 445

Length = 459

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  132 bits (334), Expect = 4e-36
 Identities = 68/147 (46%), Positives = 89/147 (60%), Gaps = 5/147 (3%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           + A ++EPIQGE G  V    ++  +R LC ++ +L IADEVQTG  RTGKL A+ Y DV
Sbjct: 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
           +PD++ + K+L GG  PISAV+   EVM    PG  G TY GNPLA   A+  LDVI EE
Sbjct: 259 KPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE 317

Query: 161 NMIENAYKMGEIFRSELSSPANKSKAS 187
            + + A  +G      L     K+KAS
Sbjct: 318 KLCQRALILGA----HLVEVLEKAKAS 340

Length = 421

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  130 bits (328), Expect = 4e-35
 Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 30/239 (12%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           I A ++EPI    G ++P   Y+K V+ +C ++  L I+DEV  G GRTGK        V
Sbjct: 214 IAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV 273

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 153
           +PDI+ + K ++    P+SA     E+      G        H +T+GGNP AC LA+  
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFK-GKGEYEHFRHVNTFGGNPAACALALKN 332

Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI--------LS 205
           L+++  EN+IE + ++GE+   +L     +      +   GL   I  L+          
Sbjct: 333 LEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIE-LVNDKETKEPAD 391

Query: 206 VSAILEVYDVCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTI 258
              +  V   C   K+ GL+      T    NN++ LSP L I+ +E+      I+ T+
Sbjct: 392 NDKVASVVAAC---KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIA----FIVGTL 443

Length = 451

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  130 bits (328), Expect = 6e-35
 Identities = 61/161 (37%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 28  VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           V AL AK+      N+ AF  EPIQG  G +VP  G+LK +R  C +  +LF+ADEV TG
Sbjct: 201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITG 260

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
            GRTG L A   E V PD++ + K L+ G  P+ AVL  D V   +  G        HG 
Sbjct: 261 FGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGY 320

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
           TY  +P++  + +  L +  E  ++ N  K G  F + L +
Sbjct: 321 TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDA 361

Length = 459

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  129 bits (326), Expect = 7e-35
 Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 26  NDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
            D+      + ++ + I A ++EPI QG  G  +    +LK+VR LC +  +L IADE+ 
Sbjct: 189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA 248

Query: 84  TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGS 138
           TG GRTGKL A  +  + PDI+ LGKAL+GG   +SA L   EV  T+  G      HG 
Sbjct: 249 TGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK 185
           T+ GNPLAC +A  +L  +LE    +      E    E  +P   + 
Sbjct: 309 TFMGNPLACAVANASLS-LLESGDWQQQVAAIEAQLREELAPLRDAP 354

Length = 428

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  127 bits (320), Expect = 8e-34
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 49/267 (18%)

Query: 29  DALEAK-LKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
           + LEA  L   P+ I AF+ EP+ G  G +VP   Y +K++A+  +Y++L +ADEV  G 
Sbjct: 205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGF 264

Query: 87  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GT--HGST 139
           GRTG +       ++PDI+++ K LS    P+SAVL +++V   +       GT  HG T
Sbjct: 265 GRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFT 324

Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL----SSP--------------- 180
             G+P+A  +A+  L +I E +++ NA + G   ++ L      P               
Sbjct: 325 ASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVE 384

Query: 181 --ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
             A+K +K  F+   G +           +A            + G++++ + +  +   
Sbjct: 385 LVADKATKTPFE-PPGKVG-------ARANAAAH---------EHGVISRAMGDT-LAFC 426

Query: 238 PALNITEQELREGLDIIINTINTMAAK 264
           P L IT  ++ E +D     ++ +AA 
Sbjct: 427 PPLIITAAQVDEMVDRFGRALDDVAAW 453

Length = 460

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  125 bits (315), Expect = 2e-33
 Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 7/152 (4%)

Query: 41  ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           I A ++EP+ QG  G       YL K R LC QY VL I DE+ TG GRTGKL A+ +  
Sbjct: 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAG 266

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 154
           V PDI+ +GKAL+GG   +SA +  + +  T+  G      HG T+  NPLAC +A  ++
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326

Query: 155 DVILEENMIENAYKMGEIFRSELSSPANKSKA 186
            ++LE    +N  ++    + EL +PA +  +
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQEL-APAAEFDS 357

Length = 429

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  123 bits (312), Expect = 1e-32
 Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 6/142 (4%)

Query: 29  DALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
             LEAK L+    N+ AF+ EPIQG  G ++P   Y  +++ +C +Y++L +ADEV  G 
Sbjct: 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF 265

Query: 87  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGG 142
           GRTG+     +  ++PD++ + K L+ G  P+ AV   D V   L+       HG TY G
Sbjct: 266 GRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSG 325

Query: 143 NPLACKLAMTALDVILEENMIE 164
           +P+A  +A+  L ++ +E ++E
Sbjct: 326 HPVAAAVALANLRILRDEGIVE 347

Length = 456

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  123 bits (311), Expect = 1e-32
 Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 26/258 (10%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           VD  E K L     NI AF+ EPI G  G +VP  GY  ++R +C +Y++L+I+DEV TG
Sbjct: 206 VDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265

Query: 86  LGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL----VPG---THG 137
            GR G   A      ++PDI+   K L+ G  P+ AV+  + ++  +      G   THG
Sbjct: 266 FGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHG 325

Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----PANKSKASFKLSSG 193
            TY G+P+AC  A+  ++++  E + E+  ++G  F   L+S    P         L + 
Sbjct: 326 FTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMAC 385

Query: 194 ----GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249
                 K S   L   ++    +   C +    GL+ +P+ +  + LSP L IT  ++ E
Sbjct: 386 VECVADKGSKALLPEDIAIGQRIDRHCQER---GLLVRPLEHLCV-LSPPLIITRAQIDE 441

Query: 250 GLDI----IINTINTMAA 263
            + I    I  T + +AA
Sbjct: 442 IVAILRAAIEETADELAA 459

Length = 466

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  121 bits (307), Expect = 4e-32
 Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           ++PYND++ALE   +   + I A +VEP+ G  G V P+ G+L+ +R L  ++  L I D
Sbjct: 181 VLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFD 240

Query: 81  EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THG 137
           EV TG  R     A  Y  V PD+  LGK + GGL PI A     E+M  L P       
Sbjct: 241 EVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQA 298

Query: 138 STYGGNPLACKLAMTALDVI-LEENMIENAYKMGEIFRSELSS 179
            T  GNPLA    +  L+ +  EE + E    +GE     L +
Sbjct: 299 GTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA 341

Length = 432

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  121 bits (306), Expect = 5e-32
 Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           + A   EPIQG+AG VVP + + K+++ L  ++ +L + DEVQTG+GRTGK  A  + +V
Sbjct: 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV 282

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
           +PD++I GK ++ G+  +S V+   E+M  L  G+   T   NP+    A   L++I EE
Sbjct: 283 KPDLIIFGKGVASGM-GLSGVIGRKELM-DLTSGSALLTPAANPVISAAAEATLEIIEEE 340

Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVY-DVCIKM 219
           N+++NA K+GE  +  L       +    +   GL   +  +  +     E+   +C + 
Sbjct: 341 NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRA 400

Query: 220 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
            + GL+  +  +  N+IR++P L IT++   +GL+I+   I    A K
Sbjct: 401 FELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALAGK 448

Length = 457

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  119 bits (300), Expect = 4e-31
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 18  PGYNIIPYNDV--DALEAKLKSNP-NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQY 73
           PG +   Y     DAL+A  + +P  ICA ++EP +Q   G  +    YL++ R LC  +
Sbjct: 211 PGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH 270

Query: 74  NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
               IADE+ TG GRTG L A     V PD++ L K L+GG  P+SAVLA  ++    + 
Sbjct: 271 GAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLD 330

Query: 134 GT------HGSTYGGNPLACKLAMTALDVILEENMIEN----AYKMGEIFR--SELSSPA 181
            +      H  +Y GNPLAC  A+  LD+  ++++I      A +M ++     E    A
Sbjct: 331 DSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVA 390

Query: 182 NKSKA----SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
           +  +A    +F+L+ GG K++       V   L  Y   +     G+V +P+ + +  + 
Sbjct: 391 DVRQAGMVVAFELTRGGNKRTPFPPAARVG--LHAYRAAL---ARGVVLRPLGDVLYWMP 445

Query: 238 P 238
           P
Sbjct: 446 P 446

Length = 472

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  118 bits (299), Expect = 7e-31
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 4/143 (2%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           + A  +EP+Q   G   P  GY ++VR +C +Y+VL ++DEV    GR G++        
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY 281

Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDV 156
            PDI+   K ++ G  P+ A++A D +    + G     HG T+GG+P++  +A+  LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341

Query: 157 ILEENMIENAYKMGEIFRSELSS 179
              E ++++       FR+ L  
Sbjct: 342 FEREGLLDHVRDNEPAFRATLEK 364

Length = 460

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  116 bits (294), Expect = 3e-30
 Identities = 87/293 (29%), Positives = 133/293 (45%), Gaps = 49/293 (16%)

Query: 2   LITTDPTSYNEF---------GPHM----PGYNIIPYNDVDALEAK--------LKSNP- 39
           L  TDP     F          P +    PG ++    +V+ALEA+         + +P 
Sbjct: 168 LTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL---EEVEALEAEALAQARAAFERHPH 224

Query: 40  NICAFMVEPIQGEAGAVVPD----DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           +I  F+ EPIQGE G    D      +   +R LC +++ L I DEVQTG+G TG   A 
Sbjct: 225 DIACFIAEPIQGEGG----DNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAY 280

Query: 96  HYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPLACKLA 150
               VRPDIV  GK        +  ++A    DEV   +  V     ST+GGN +    A
Sbjct: 281 QQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRA 335

Query: 151 MTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAI 209
              L+VI E+ ++ENA + GE   + L   A +  A      G GL  + +   L  +A 
Sbjct: 336 RRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFD---LPTTAD 392

Query: 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
            +  +V  ++ + G++  P     IR  PAL +T +E+   +D +   +  +A
Sbjct: 393 RD--EVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEVA 443

Length = 443

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  117 bits (294), Expect = 4e-30
 Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 13/155 (8%)

Query: 30  ALEAKLKSNPN-ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
            +E  L  + + I A +VEP IQG  G  +    YLK +R  C +Y V  I DE+  G G
Sbjct: 203 HMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFG 262

Query: 88  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-------MGTLVPGTHGSTY 140
           RTG + A     +RPD + L KAL+GG  P++AVL  D V         TL    H  +Y
Sbjct: 263 RTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY 322

Query: 141 GGNPLACKLAMTALDVILEENMIEN----AYKMGE 171
            GNPLAC  A+  LD+  ++N+IEN    A +M E
Sbjct: 323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAE 357

Length = 466

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  115 bits (290), Expect = 5e-30
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 16/179 (8%)

Query: 13  FGP------HMPG----YNIIPYNDVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPD 59
           FGP      H+P     + I   + +DA+E   KS+     + A + EP+QGE G  V  
Sbjct: 158 FGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAP 217

Query: 60  DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPI 118
              +  +R LC ++ ++ IADEVQ+G  RTGKL A+ HY D +PD++ + K+L+GG+ P+
Sbjct: 218 KELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDLMTMAKSLAGGM-PL 275

Query: 119 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
           S V+ +  +M    PG  G TY GNPLA   A   L++I +E++ E A ++G+  ++ L
Sbjct: 276 SGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL 334

Length = 421

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  114 bits (288), Expect = 3e-29
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A ++E +QGE G +     +L+ +R +  +  +  I DE+Q+G GRTGK+ A  +  + P
Sbjct: 234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP 293

Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
           D+V+L KA+ G L P++ V+  +  + T  PG H  T+ GN +A       L  I E  +
Sbjct: 294 DVVVLSKAIGGSL-PLAVVVYREW-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL 351

Query: 163 IENAYKMGEIFRSEL 177
            E+A  MGE  R  L
Sbjct: 352 AEHAAAMGERLREHL 366

Length = 464

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  114 bits (287), Expect = 3e-29
 Identities = 60/172 (34%), Positives = 80/172 (46%), Gaps = 22/172 (12%)

Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A+E   +   + I A +VEP+ G  G V P  G+L+ +R LC ++  L I DEV
Sbjct: 180 PYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEV 239

Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GT 135
            TG  R     A  Y  V PD+  LGK + GGL P+ A     E+M  L P       G 
Sbjct: 240 MTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAG- 296

Query: 136 HGSTYGGNPLACKLAMTA----LDVILEENMIENAYKMGEIFRSELSSPANK 183
              T  GNP    LAM A    L ++ E    E    + +     L   A K
Sbjct: 297 ---TLSGNP----LAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKK 341

Length = 426

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  113 bits (284), Expect = 7e-29
 Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 29  DALEAKLKSNP-NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
             +          I A +VEP +Q  AG  + D  YL+ +RALC +Y V  IADE+  G 
Sbjct: 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGC 268

Query: 87  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTY 140
           GRTG   A     V PD + L K +SGG  P+S VL+ D +              H  +Y
Sbjct: 269 GRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY 328

Query: 141 GGNPLACKLAMTALDVILEENMI-ENAYK 168
            GNPLAC+ A+  LD+  E++++  NA K
Sbjct: 329 TGNPLACRAALATLDLFAEDDVLARNARK 357

Length = 453

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  113 bits (284), Expect = 1e-28
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 18/161 (11%)

Query: 35  LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
           LK  P  I AF+ EP+ G  G + P   Y +K++A+  +Y++LFIADEV    GR G + 
Sbjct: 254 LKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF 313

Query: 94  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYGGN 143
                +++PD+V L KALS    PI AVL   E+          +G+     HG TY G+
Sbjct: 314 GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF---AHGFTYSGH 370

Query: 144 PLACKLAMTALDVILEENMIENAYKMGEIFRSEL----SSP 180
           P++C +A+ AL +  E N+ E+  K+   F+  +     SP
Sbjct: 371 PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSP 411

Length = 504

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  112 bits (283), Expect = 1e-28
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I AF+ EP+ G  G V P  GY   ++A+  +Y++L IADEV TG GR G +    +  
Sbjct: 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYG 279

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
           + PD++ + K L+    P+S  +  ++V   L  G+       HG TY G+P+    A+ 
Sbjct: 280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALA 339

Query: 153 ALDVILEENMIENAYKMGEIFRSEL 177
            LD++  EN++ NA ++G  FR+ L
Sbjct: 340 NLDILERENLVGNAAEVGAYFRARL 364

Length = 461

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  109 bits (273), Expect = 2e-27
 Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A ++E IQGE G V     +L+K+R +  ++++  I DEVQ G GR+G + A  +  + P
Sbjct: 209 AVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP 268

Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
           D V++ KA+ GGL P+ AVL          P  H  T+ GN LA      AL+   ++N+
Sbjct: 269 DFVVMSKAVGGGL-PL-AVLLIAPEFDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNL 326

Query: 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMKD 221
            +NA + GE   S L     +      +   GL + I  +    S      Y    ++  
Sbjct: 327 AQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAA 386

Query: 222 A--------GLV--TKPISNNIIRLSPALNITEQELREGLDIIINTI 258
           A        GL+  T      + RL   + I ++E  EG+      +
Sbjct: 387 AIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAV 433

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  109 bits (273), Expect = 3e-27
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 15/222 (6%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A ++E IQGE G       +L+K+R +  ++ +L I DEVQ G  RTGK+ A  +  + P
Sbjct: 228 AVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287

Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
           DI+++ KA+ GGL P+ AVL   +      PG H  T+ GN LA    +T L ++ EEN+
Sbjct: 288 DIIVMSKAVGGGL-PL-AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL 345

Query: 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTL--------ILSVSAILEVYD 214
            +NA + GE  +++L+    +      +   GL   I  +        + S  A  E+  
Sbjct: 346 AQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGEL-A 404

Query: 215 VCIKMK--DAGLVTKP--ISNNIIRLSPALNITEQELREGLD 252
             I+    + GL+ +    + N++RL P L IT+ E  E +D
Sbjct: 405 AAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446

Length = 459

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  107 bits (269), Expect = 8e-27
 Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 23  IPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           +PYND++ALE   +     I   +VEP+ G  G V P   +L  +RAL  +Y  L I DE
Sbjct: 177 LPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDE 236

Query: 82  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGS 138
           V TG  R     A  Y  V PD+  LGK + GGL P+ A     E+M  L P G      
Sbjct: 237 VMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAG 294

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG 194
           T  GNPLA    +  L ++ EE +     ++ +     LS     +     ++  G
Sbjct: 295 TLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVG 350

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  106 bits (268), Expect = 1e-26
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 16/231 (6%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A +VE +QGE G  V    +L+++  LC ++++L I D++Q G GRTG   +     + P
Sbjct: 201 AVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260

Query: 103 DIVILGKALSG-GLYPISAVLADDE--VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           DIV L K++SG GL P++ VL   E  V     PG H  T+ GN LA   A  AL+    
Sbjct: 261 DIVTLSKSISGYGL-PMALVLIKPELDVWK---PGEHNGTFRGNNLAFVTATAALEEYWS 316

Query: 160 ENMIENAYK-MGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCI 217
           ++  E   K  GE+ R  L   A K         G G+ + I+     ++       +  
Sbjct: 317 DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAG-----KIAA 371

Query: 218 KMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT 266
           +  + GL+  T    + +++L P L I E+EL EGLDI+   +  + A++ 
Sbjct: 372 EAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAEEE 422

Length = 425

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  105 bits (264), Expect = 3e-26
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 10/216 (4%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A ++E +QGE G  V  D +L+++  LC ++++L I D++Q G GRTG   +     + P
Sbjct: 197 AVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256

Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
           DIV L K++SG   P++  L   E +    PG H  T+ GN LA   A  AL+    ++ 
Sbjct: 257 DIVCLSKSISGYGLPLALTLIKPE-LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA 315

Query: 163 IENA-YKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMK 220
            E A  +  EI +  L     +     K   G GL + I      ++   ++        
Sbjct: 316 FEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAG--KIAKAAF--- 370

Query: 221 DAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
           + GL+  T   ++ +I+L P L I E+ L++GLDI+
Sbjct: 371 ENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  104 bits (262), Expect = 6e-26
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 16/161 (9%)

Query: 11  NEFGPHMPGYNIIPYNDVDALEAKLKS--NPNICAFMVEPI-QGEAGAVVPDDGYLKKVR 67
             F P  P     P  ++      L+   +  + A ++EPI QG  G    D   ++ VR
Sbjct: 170 QIFAPAPPVRGSSP-QEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVR 228

Query: 68  ALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV 127
            LC ++++L IADE+ TG GRTG+L A     V PDI+ +GKAL+GG    +A L  D+V
Sbjct: 229 TLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKV 288

Query: 128 M---------GTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
                     G L+   HG T+  NPLAC +A  +L++I  
Sbjct: 289 AQLISTPNGGGALM---HGPTFMANPLACAVAHASLEIIET 326

Length = 422

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  104 bits (262), Expect = 2e-25
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 26/159 (16%)

Query: 27  DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLK----KVRA---LCSQYNVLFI 78
            V    A + +       F+ E I   AG +   +GYL+     VRA   +C       I
Sbjct: 770 SVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVC-------I 822

Query: 79  ADEVQTGLGRTGKLLAIHY-----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
           ADEVQ G GR G     H+     + V PDIV +GK +  G +P+ AV+   E+  +   
Sbjct: 823 ADEVQVGFGRVGS----HWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDN 877

Query: 134 GT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
           G  + +T+GGNP++C + +  LD+I +E++  NA ++G 
Sbjct: 878 GMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGN 916

Length = 1013

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  103 bits (258), Expect = 2e-25
 Identities = 80/278 (28%), Positives = 120/278 (43%), Gaps = 35/278 (12%)

Query: 2   LITTDPTSYNEF---------GPHM-PGYNIIPYNDVDALEAK--------LKSNP-NIC 42
           L  TDP     F          P +    +    + V ALE +            P +I 
Sbjct: 161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIA 220

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
            F+ EPIQGE G       +L+ +RALC +++ L I DEVQTG+G TG   A     V+P
Sbjct: 221 CFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQP 280

Query: 103 DIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPLACKLAMTALDVI 157
           DIV  GK        +  ++A    DEV   +  VP    ST+GGN +    A   L++I
Sbjct: 281 DIVAFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEII 335

Query: 158 LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVC 216
            EE +++NA   G    + L   A +         G GL  + +   L  +A  +  +V 
Sbjct: 336 EEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD---LPSTADRD--EVI 390

Query: 217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
            ++   G++        IR  P L +T +E+   +D I
Sbjct: 391 RQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  100 bits (251), Expect = 6e-24
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 13/148 (8%)

Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY----- 97
            F+ EP+ G AG +    GYL++V A       + IADEVQ G GR G     HY     
Sbjct: 747 GFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-----HYFWGFE 801

Query: 98  -EDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-VPGTHGSTYGGNPLACKLAMTALD 155
            + V PDI+ + K +  G +P+ AV+   E+   L   G   S+ GG+P++C++ M  LD
Sbjct: 802 QQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860

Query: 156 VILEENMIENAYKMGEIFRSELSSPANK 183
           V+ EE + ENA ++G+  ++ L + A++
Sbjct: 861 VLREEKLQENARRVGDHLKARLEALADR 888

Length = 972

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 99.3 bits (248), Expect = 8e-24
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 27/159 (16%)

Query: 23  IPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           + +ND+ ALEA L    ++ A + EP     G V+P+ G+ + +R L  +Y  L + DE 
Sbjct: 202 VEFNDLAALEAALADG-DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260

Query: 83  QT------GLGRTGKLLAIHYEDVRPDIVILGKALSGGL----YPISAVLAD--DEVMGT 130
            T      G  R   L         PD +++GK ++GG+    Y  SA LA+       +
Sbjct: 261 HTISSGPGGYTRAHGL--------EPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKAS 312

Query: 131 LVPGTH--GSTYGGNPLACKLAMTALDVILEENMIENAY 167
             PG    G+T   N     LAM A+   L E M E AY
Sbjct: 313 APPGHSGIGTTLSANA----LAMAAMRATLAEVMTEAAY 347

Length = 453

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 96.1 bits (239), Expect = 1e-22
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+  F+ EP QG  G + P + Y  +++ +C QY+VL  ADEV  G GRTG+  A  +  
Sbjct: 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFG 281

Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 155
             PD + + K L+ G  P+  ++    +   LV       HG TY G+P+A  +A+  L 
Sbjct: 282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341

Query: 156 VILEENMIE 164
            + +E ++ 
Sbjct: 342 ALRDEGVVT 350

Length = 460

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 23  IPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           +P+ND++AL EA  K    + A +VEPI G  G V P  G+L+ V  L  +   L I DE
Sbjct: 182 VPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDE 241

Query: 82  VQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT---LVPG 134
           V T      G    LL +      PD+  LGK + GGL PI A     ++M     L P 
Sbjct: 242 VITAFRFMYGGAQDLLGVE-----PDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPA 295

Query: 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
               T  GNP +    +  L+V+ +E + E   ++G +    +   A K
Sbjct: 296 YQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEK 344

Length = 428

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 15  PHMPGYNIIPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73
              P    +PYND    +  + S    +   + EPI    G V+P  G+++ +   C + 
Sbjct: 175 LAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT 234

Query: 74  NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
             L I DEV TG  R  +  A     V+PDI + GK L GGL P +AV+A   +M  L P
Sbjct: 235 GSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAP 292

Query: 134 -GT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 175
            GT     T  GNPLA      ++++  E+        + + F S
Sbjct: 293 EGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLS 337

Length = 433

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 10/134 (7%)

Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++   ++N   I A ++EP+ G +G +VP   +L+ +R +  +   L + DEV
Sbjct: 229 PYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEV 288

Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R     A  Y  + PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 289 MTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGT 346

Query: 140 YGGNPLACKLAMTA 153
             GNP    LAMTA
Sbjct: 347 LSGNP----LAMTA 356

Length = 474

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
            YND+ +LEA  + +P  I   ++EP    A A  P DG+L +VR LC +   LFI DE+
Sbjct: 170 RYNDIASLEALFEDHPGRIACVILEP----ATADEPQDGFLHEVRRLCHENGALFILDEM 225

Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM--GT---------- 130
            TG  R     A     + PD+   GKAL  G + +SA+    E M  G           
Sbjct: 226 ITGF-RWHMRGAQKLYGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVF 283

Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
           L+  THG+      LA   A+  + +  +E++IE  ++ G 
Sbjct: 284 LLSTTHGAETHA--LAA--AIATMAIYRDEDVIERLHEQGA 320

Length = 431

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 13/204 (6%)

Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           + A +VEPIQ E G       + +K+R +  ++NV FI DEVQTG+G TGK  A  + ++
Sbjct: 252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311

Query: 101 R--PDIVILG-KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 157
              PD+V    K  + G +        D       P    +T+ G+P    +    +  I
Sbjct: 312 DDPPDMVTFSKKFQTAGYF------FHDPAFRPNKPYRQFNTWMGDPSRALILREIIQEI 365

Query: 158 LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYD-VC 216
             ++++EN   +G+   + L     K     +   G   K   T I   +      D + 
Sbjct: 366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG---KGRGTFIAWDTPDEAKRDKLL 422

Query: 217 IKMKDAGLVTKPISNNIIRLSPAL 240
            K ++ G+         IRL P L
Sbjct: 423 KKARNNGVNIGGCGVKAIRLRPML 446

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 29  DALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
           D  EA  K+   I A ++EP + G  G ++ D  + + +  +C    +  I DEV TGL 
Sbjct: 574 DEYEASAKNGH-IAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLW 632

Query: 88  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHG 137
           R G   A      +PDI    K L+GGL P++A LA +EV             L    HG
Sbjct: 633 RLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL----HG 688

Query: 138 STYGGNPLACKLAMTAL 154
            +Y  +P+ C  A  AL
Sbjct: 689 HSYTAHPMGCAAAAKAL 705

Length = 817

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 20  YNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
           Y + P N    D+D LE K+K NP+I   ++       GAV P +  L+++  +  +Y++
Sbjct: 147 YRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKE-ILREIVDIAREYDL 205

Query: 76  LFIADEV 82
             I DE+
Sbjct: 206 FIICDEI 212

Length = 433

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 18/108 (16%)

Query: 17  MPGYNIIPY---------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVR 67
           + G   +P           DV  LE      PN+   ++ P     G +VP    LK++R
Sbjct: 61  LAGAKPVPVPVDDAGYGGLDVAILEELKAK-PNVALIVITPNTTSGGVLVP----LKEIR 115

Query: 68  ALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG 113
            +  +Y +L + D    G       + I       D+V     K L G
Sbjct: 116 KIAKEYGILLLVDAASAGGASPAPGVLIPEG--GADVVTFSLHKNLGG 161

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 61/248 (24%), Positives = 89/248 (35%), Gaps = 47/248 (18%)

Query: 26  NDVDALEAKLKSNPNI----CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           ND+D LEA L+            + E +    G + P    L ++  L  +Y  L   DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208

Query: 82  VQ-TG-LGRTGKLLAIH--YEDVRPDIVI--LGKAL--SGGLYPISAVLADDEVMGTLVP 133
               G LG  G+ LA H   E    DI++  LGKAL  SGG    SA L D      L  
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDY-----LRN 263

Query: 134 GTHGSTYGGN--PLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS 191
                 +     P     A+ AL ++ E              R  L   A   ++  K  
Sbjct: 264 RARPFIFSTALPPAVAAAALAALRILEEGPER----------RERLQELAAFFRSLLKAL 313

Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV-----------TKPISNNIIRLSPAL 240
              L  S  + I+ V  IL   +  ++   A L            T P     +R++   
Sbjct: 314 GLVLLPS-ESPIIPV--ILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTA 370

Query: 241 NITEQELR 248
             TE+++ 
Sbjct: 371 AHTEEDID 378

Length = 388

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 40/176 (22%)

Query: 24  PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY---------LKKVRALCSQYN 74
            +NDV+ LE  L+ N            GE   ++  DG          L ++ AL  +Y 
Sbjct: 128 RHNDVEHLERLLEKNR-----------GERRKLIVTDGVFSMDGDIAPLPQLVALAERYG 176

Query: 75  VLFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGGLYPISAVLADDE 126
              + D+   TG LG  G+    H+  +    DI +  L KAL   G       V     
Sbjct: 177 AWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGA-----YVAGSQA 231

Query: 127 VMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSEL 177
           ++  L+      T        P     A+ AL++I EE    E    +    R+ L
Sbjct: 232 LIDYLI--NRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL 285

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 32/125 (25%)

Query: 24  PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DG---YLKKVRALCSQYNV 75
           P+NDVDALEA L                    +V +     DG    L ++ AL  ++  
Sbjct: 151 PHNDVDALEALLAKWRA-----------GRALIVTESVFSMDGDLAPLAELVALARRHGA 199

Query: 76  LFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGGLYPISAVLADDEV 127
             + DE   TG LG  G+ LA           I++  LGKAL  SG      AVL  + +
Sbjct: 200 WLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGA-----AVLGSETL 254

Query: 128 MGTLV 132
           +  L+
Sbjct: 255 IDYLI 259

Length = 385

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 34/247 (13%)

Query: 26  NDVDALEAKLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
            D DALEA LK        ++        G V   +  L+K+  L  ++N+L + DE   
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185

Query: 85  GLGRTGKL--LAIHYEDVRPDIVI---LGKALSGGLY--PISAVLADDEV---MGTLVPG 134
           G                  P++++     KA   GL    +  +L +  V   +  L   
Sbjct: 186 GFVFGSLDAVATRALLAEGPNLLVVGSFSKAF--GLAGWRVGYILGNAAVISQLRKLARP 243

Query: 135 THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKL--S 191
            + ST+     A       L V  E E M +   +  +  R  L        A   +  S
Sbjct: 244 FYSSTHLQ-AAAAAALSDPLLVASELEEMRQRIKERRDYLRDGL------EAAGLSVLPS 296

Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNI----IRLSPALNITEQEL 247
             G         L   A L +  V ++    G+   P S+      +R++ A   TE+EL
Sbjct: 297 QAGF---FLLTGLDPEAALALAQVLLEEV--GVYVTPGSSFGGPGWLRITVA-GGTEEEL 350

Query: 248 REGLDII 254
            E L+ I
Sbjct: 351 EELLEAI 357

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
KOG1402|consensus	427		100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PLN00144	382	acetylornithine transaminase	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
KOG1404|consensus	442		100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
KOG1401|consensus	433		100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.98
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.96
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.96
PLN02822	481	serine palmitoyltransferase	99.94
KOG1403|consensus	452		99.94
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.94
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.94
PRK09064	407	5-aminolevulinate synthase; Validated	99.94
KOG1405|consensus	484		99.93
PLN02955	476	8-amino-7-oxononanoate synthase	99.93
PRK07324	373	transaminase; Validated	99.93
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.93
PRK13393	406	5-aminolevulinate synthase; Provisional	99.93
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.93
PRK07682	378	hypothetical protein; Validated	99.93
PLN00175	413	aminotransferase family protein; Provisional	99.93
PRK06207	405	aspartate aminotransferase; Provisional	99.92
PRK07681	399	aspartate aminotransferase; Provisional	99.92
PRK06108	382	aspartate aminotransferase; Provisional	99.92
PRK05957	389	aspartate aminotransferase; Provisional	99.92
PRK06348	384	aspartate aminotransferase; Provisional	99.92
PRK06225	380	aspartate aminotransferase; Provisional	99.91
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.91
PRK13392	410	5-aminolevulinate synthase; Provisional	99.91
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.91
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.91
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.91
PRK07505	402	hypothetical protein; Provisional	99.91
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.91
PRK09082	386	methionine aminotransferase; Validated	99.91
PRK07179	407	hypothetical protein; Provisional	99.91
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.91
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.91
PRK08068	389	transaminase; Reviewed	99.91
PRK05942	394	aspartate aminotransferase; Provisional	99.91
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.91
PRK09148	405	aminotransferase; Validated	99.9
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.9
PRK06290	410	aspartate aminotransferase; Provisional	99.9
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.9
PRK08912	387	hypothetical protein; Provisional	99.9
PRK08175	395	aminotransferase; Validated	99.9
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.9
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.9
PRK05764	393	aspartate aminotransferase; Provisional	99.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.9
PRK07777	387	aminotransferase; Validated	99.9
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.9
PLN02483	489	serine palmitoyltransferase	99.9
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.9
PRK07683	387	aminotransferase A; Validated	99.9
PRK08636	403	aspartate aminotransferase; Provisional	99.9
PRK08960	387	hypothetical protein; Provisional	99.9
PRK12414	384	putative aminotransferase; Provisional	99.9
PLN02187	462	rooty/superroot1	99.9
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.89
PRK08361	391	aspartate aminotransferase; Provisional	99.89
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.89
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.89
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.89
PLN02656	409	tyrosine transaminase	99.89
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.89
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.89
PRK07550	386	hypothetical protein; Provisional	99.89
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.89
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.89
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.89
PRK07568	397	aspartate aminotransferase; Provisional	99.89
PRK07337	388	aminotransferase; Validated	99.89
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.89
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.89
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.89
KOG0634|consensus	472		99.88
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.88
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.88
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.88
PTZ00433	412	tyrosine aminotransferase; Provisional	99.88
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.88
PRK06107	402	aspartate aminotransferase; Provisional	99.88
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.88
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.88
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.88
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.88
PRK06855	433	aminotransferase; Validated	99.88
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.88
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.88
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.88
PTZ00376	404	aspartate aminotransferase; Provisional	99.87
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.87
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.87
PRK05839	374	hypothetical protein; Provisional	99.87
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.87
PLN02721	353	threonine aldolase	99.87
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.87
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.87
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.87
PRK03321	352	putative aminotransferase; Provisional	99.87
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.87
PRK08363	398	alanine aminotransferase; Validated	99.87
PTZ00377	481	alanine aminotransferase; Provisional	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.87
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
KOG1360|consensus	570		99.87
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.86
PRK06836	394	aspartate aminotransferase; Provisional	99.86
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.86
PLN02397	423	aspartate transaminase	99.86
PRK09265	404	aminotransferase AlaT; Validated	99.86
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.86
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.86
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.86
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.86
KOG0259|consensus	447		99.86
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.85
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.85
PRK09275	527	aspartate aminotransferase; Provisional	99.85
PLN02231	534	alanine transaminase	99.85
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.85
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.85
PRK08637	388	hypothetical protein; Provisional	99.85
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.85
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.85
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.84
KOG0257|consensus	420		99.84
PRK09105	370	putative aminotransferase; Provisional	99.84
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.84
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.84
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.84
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.84
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.84
PLN02409	401	serine--glyoxylate aminotransaminase	99.84
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.83
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.83
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.83
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.83
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.83
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.83
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.83
PRK08354	311	putative aminotransferase; Provisional	99.83
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.82
PLN02672	1082	methionine S-methyltransferase	99.82
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.82
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.81
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.81
PRK02948	381	cysteine desulfurase; Provisional	99.8
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.8
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.8
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.79
KOG1359|consensus	417		99.79
PRK10534	333	L-threonine aldolase; Provisional	99.78
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.78
PRK07908	349	hypothetical protein; Provisional	99.78
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.78
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.76
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.76
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.75
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.75
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.73
KOG1357|consensus	519		99.72
KOG0633|consensus	375		99.72
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.72
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.72
KOG1368|consensus	384		99.72
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.71
PLN02368	407	alanine transaminase	99.7
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.7
PLN02242	418	methionine gamma-lyase	99.7
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.7
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.7
PLN02651	364	cysteine desulfurase	99.68
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.68
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.68
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.67
KOG0256|consensus	471		99.66
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.66
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.66
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.65
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.65
PRK06767	386	methionine gamma-lyase; Provisional	99.65
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.65
PRK06460	376	hypothetical protein; Provisional	99.64
PRK08249	398	cystathionine gamma-synthase; Provisional	99.63
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.62
PRK14012	404	cysteine desulfurase; Provisional	99.62
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.62
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.62
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.62
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.6
PRK06234	400	methionine gamma-lyase; Provisional	99.6
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.59
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.59
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.59
PRK05968	389	hypothetical protein; Provisional	99.58
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.58
PRK08776	405	cystathionine gamma-synthase; Provisional	99.58
PRK07049	427	methionine gamma-lyase; Validated	99.57
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.56
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.56
KOG2862|consensus	385		99.55
PRK03080	378	phosphoserine aminotransferase; Provisional	99.55
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.55
PRK07503	403	methionine gamma-lyase; Provisional	99.55
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.55
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.55
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.54
PRK08045	386	cystathionine gamma-synthase; Provisional	99.53
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.53
PRK07582	366	cystathionine gamma-lyase; Validated	99.52
PRK07811	388	cystathionine gamma-synthase; Provisional	99.52
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.52
PRK07050	394	cystathionine beta-lyase; Provisional	99.52
PLN02509	464	cystathionine beta-lyase	99.51
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.51
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.51
PRK05367	954	glycine dehydrogenase; Provisional	99.5
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.5
PRK08064	390	cystathionine beta-lyase; Provisional	99.5
PRK09028	394	cystathionine beta-lyase; Provisional	99.49
PRK08861	388	cystathionine gamma-synthase; Provisional	99.49
PRK12566	954	glycine dehydrogenase; Provisional	99.48
KOG1358|consensus	467		99.48
PRK07671	377	cystathionine beta-lyase; Provisional	99.47
PRK08574	385	cystathionine gamma-synthase; Provisional	99.46
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.46
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.46
PRK05967	395	cystathionine beta-lyase; Provisional	99.46
PRK05939	397	hypothetical protein; Provisional	99.46
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.45
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.44
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.44
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.44
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.43
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.42
PLN02724	805	Molybdenum cofactor sulfurase	99.4
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.4
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.4
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.39
PRK08114	395	cystathionine beta-lyase; Provisional	99.39
PRK02769	380	histidine decarboxylase; Provisional	99.38
PRK04311	464	selenocysteine synthase; Provisional	99.38
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.37
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.37
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.36
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.35
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.32
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.3
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.3
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.29
PLN02880	490	tyrosine decarboxylase	99.29
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.29
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.28
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.27
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.26
PRK15029	755	arginine decarboxylase; Provisional	99.26
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.24
PLN02452	365	phosphoserine transaminase	99.24
KOG0053|consensus	409		99.22
PLN02271	586	serine hydroxymethyltransferase	99.21
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.2
PLN03032	374	serine decarboxylase; Provisional	99.2
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.17
PLN02590	539	probable tyrosine decarboxylase	99.16
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.14
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.13
KOG1549|consensus	428		99.13
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.13
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.09
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.08
PRK06434	384	cystathionine gamma-lyase; Validated	99.07
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.03
PRK05367	954	glycine dehydrogenase; Provisional	99.02
PLN02263	470	serine decarboxylase	99.01
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.01
PRK13578	720	ornithine decarboxylase; Provisional	98.99
PRK15400	714	lysine decarboxylase CadA; Provisional	98.97
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.94
PRK13237	460	tyrosine phenol-lyase; Provisional	98.91
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.89
PRK12462	364	phosphoserine aminotransferase; Provisional	98.89
KOG3846|consensus	465		98.84
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.78
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.76
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.76
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.75
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.74
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.71
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.63
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.59
KOG0258|consensus	475		98.59
KOG1383|consensus	491		98.5
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.49
KOG2040|consensus	1001		98.41
KOG0628|consensus	511		98.38
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.3
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.18
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	98.11
PRK12566	954	glycine dehydrogenase; Provisional	98.07
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.07
KOG2467|consensus	477		98.03
KOG1412|consensus	410		97.95
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.94
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.9
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	97.79
KOG0629|consensus	510		97.5
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.11
KOG1411|consensus	427		96.74
KOG2040|consensus	1001		96.56
KOG3843|consensus	432		96.15
COG4100	416	Cystathionine beta-lyase family protein involved i	94.51
KOG2790|consensus	370		93.12
PF06153	109	DUF970: Protein of unknown function (DUF970); Inte	83.35
smart00642	166	Aamy Alpha-amylase domain.	81.31

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-49  Score=330.11  Aligned_cols=254  Identities=41%  Similarity=0.731  Sum_probs=239.4

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      +|++++|..++.|.|+-++++++||||++++++++  ++++++|++||+++.+|.++++++++++++++|++||+++|+|
T Consensus       147 lS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai--~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~D  224 (404)
T COG4992         147 LSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAI--DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILD  224 (404)
T ss_pred             eeccCChhhccCCCCCCCCceecCCCCHHHHHHHh--ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEe
Confidence            58999999999999999999999999999999999  4589999999999999999999999999999999999999999


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE  160 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  160 (266)
                      |+|+|+||+|..|+++++++.||+++++|++||| +|+|++++++...+.+.+..|++||++||++++++.++|+.+.++
T Consensus       225 EVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e  303 (404)
T COG4992         225 EVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEE  303 (404)
T ss_pred             ccccCCCccchHHHHHHhCCCCCEEEeeccccCC-ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcch
Confidence            9999999999999999999999999999999999 999999999777888999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547         161 NMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSP  238 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~  238 (266)
                      ++.++.++.+++++++|++ +..  +.+.. ++|.|+   |+.+++..  ...+.++++.|.++|+++.+.+++.+||.|
T Consensus       304 ~ll~~v~~~g~~~~~~L~~-l~~~~~~v~~-vRG~GL---miGiel~~--~~~a~~~~~~~~~~gvL~~~a~~~ViR~~P  376 (404)
T COG4992         304 GLLENVREKGEYLLQRLRE-LKRRYPLVKE-VRGRGL---MIGIELKE--PYRARDIVRALREEGVLVLPAGPNVIRFLP  376 (404)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhhcCCceee-eeccee---EEEEEecC--cccHHHHHHHHHHCCeEEecCCCCeEEecC
Confidence            9999999999999999999 654  34555 999999   99999988  335889999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         239 ALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ++.++++++++++++|+++++.....
T Consensus       377 pL~i~~eei~~~~~~l~~~l~~~~~~  402 (404)
T COG4992         377 PLVITEEEIDEALDALERALAAASAR  402 (404)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999876543

>KOG1402|consensus

Probab=100.00  E-value=1.6e-43  Score=285.30  Aligned_cols=253  Identities=57%  Similarity=1.015  Sum_probs=236.5

Q ss_pred             CCccCCcCcccccCCCCCC-ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           1 MLITTDPTSYNEFGPHMPG-YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +|++++|..++.|+|+.|+ +..+||+|.++|+.+++ +++++++++||+++..|.+++++.++++.+++|.+|++++|.
T Consensus       168 is~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~-~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~  246 (427)
T KOG1402|consen  168 ISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALK-SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIA  246 (427)
T ss_pred             EEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhc-CCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEe
Confidence            5789999999999999999 88999999999999995 469999999999999999999999999999999999999999


Q ss_pred             eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ||+|+|++|+|..++.+...+.||++.++|+++||++|++.++++++++-.+++..|++||.+||++++++.++|+.+.+
T Consensus       247 DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e  326 (427)
T KOG1402|consen  247 DEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE  326 (427)
T ss_pred             hhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccC--C-CcccEEecCccceeeEEEEeeC--ccchHHHHHHHHHHCCceeccCCCCEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKS--K-ASFKLSSGGLKKSINTLILSVS--AILEVYDVCIKMKDAGLVTKPISNNII  234 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~~~~~i  234 (266)
                      +++.++...++..++.+|.+ +...  . +.. +++.|+   +..+++...  ++.++.++|-.|.++|++.-|.+++.|
T Consensus       327 ekL~era~~lG~~l~~~L~~-l~~~~p~~v~~-VRGrGl---~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~Ii  401 (427)
T KOG1402|consen  327 EKLVERAAKLGEILRDQLNK-LQKKFPHVVKE-VRGRGL---LNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNII  401 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccccccchhhe-eeccce---EEEEEeccccccchhHHHHHHcccccccccCCCCCCeE
Confidence            99999999999999999999 6642  3 444 899999   988887632  256788999999999999999999999


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ||+|++.++++|+++.++.|.+++.
T Consensus       402 RfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  402 RFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             EecCCcccCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998764

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-42  Score=295.83  Aligned_cols=254  Identities=39%  Similarity=0.694  Sum_probs=225.9

Q ss_pred             CCccCCcCcc-cccCCCCCCceeecCCC-----------------HHHHHHHHhc---C-CCEEEEEEccccCCCCcccC
Q psy6547           1 MLITTDPTSY-NEFGPHMPGYNIIPYND-----------------VDALEAKLKS---N-PNICAFMVEPIQGEAGAVVP   58 (266)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~---~-~~~~~i~~~~~~~~~g~~~~   58 (266)
                      ||+|+..... ..|.|+.++|+++||++                 .+.+++.+..   . .+++++++||+++.+|.+++
T Consensus       161 lslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~  240 (447)
T COG0160         161 LSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVP  240 (447)
T ss_pred             HHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCC
Confidence            3555555555 56899999999999884                 2445664433   1 27999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCC
Q psy6547          59 DDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS  138 (266)
Q Consensus        59 ~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~  138 (266)
                      |++|+++++++|++||+++|+||+|+||||+|..|+++++|+.||++++||++++| +|+|.+++++++++ ..+..+..
T Consensus       241 p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G-~Pl~avv~r~ei~~-~~~g~~~~  318 (447)
T COG0160         241 PKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEIMD-WPPGGHGG  318 (447)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-CceeEEeccHHhcc-cCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999998 77778999


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc------cc
Q psy6547         139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA------IL  210 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~------~~  210 (266)
                      ||.+||++++++.++|+.++++++.++..+++++++++|++ +..  +.+.+ ++|.|+   |+.+++..+.      ..
T Consensus       319 Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~-l~~~~~~Igd-VRG~Gl---m~giE~v~d~~t~~p~~~  393 (447)
T COG0160         319 TFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEE-LQEKHPLIGD-VRGLGL---MIGVELVKDRDTKEPDAE  393 (447)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH-HHhhcCceec-ccccce---EEEEEEecCCCCCCCCHH
Confidence            99999999999999999999999999999999999999999 553  45677 999999   9999988532      23


Q ss_pred             hHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         211 EVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       211 ~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ...++++++.++|+++..++  .+.+||.|++.++++++|++++.|++++++.
T Consensus       394 ~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         394 LAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             HHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            47789999999999999887  8999999999999999999999999998764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=6.5e-40  Score=288.10  Aligned_cols=251  Identities=33%  Similarity=0.589  Sum_probs=222.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      +|+++++..++.|.|+.+++..+|++|.+++++.+++    ..++++|++||+++++|.+.++++++++++++|++||++
T Consensus       181 ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~l  260 (442)
T TIGR03372       181 LSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGAL  260 (442)
T ss_pred             hhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence            3566777777889999999999999999999888853    247999999999999999999999999999999999999


Q ss_pred             EEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHH
Q psy6547          77 FIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        77 li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +|+||+++||||+|..|+++.+++.||++++||++++|++|+|.+++++++++.+.  ...+.+||++||++++++.++|
T Consensus       261 lI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L  340 (442)
T TIGR03372       261 LILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATI  340 (442)
T ss_pred             EEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHH
Confidence            99999999999999988999999999999999999999669999999999988773  3468899999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--
Q psy6547         155 DVILEENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--  229 (266)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--  229 (266)
                      +.++++++.++.++..+++++.|++ +..  + .+.. +++.|.   |+.+++.+  ......+++.|+++||++.+.  
T Consensus       341 ~~i~~~~l~~~~~~~G~~l~~~L~~-l~~~~~~~i~~-vRG~Gl---~~giel~~--~~~~~~i~~~l~~~Gvl~~~~~~  413 (442)
T TIGR03372       341 NELLEKNLPAQAAIKGDFLLDGFQQ-LAAEYPDLIIE-ARGKGL---LMAIEFRD--NEIGYAFAKELFQQNILVAGTLN  413 (442)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHH-HHHhCCCceEE-EecceE---EEEEEeCC--hHHHHHHHHHHHHCCcEEeecCC
Confidence            9999999999999999999999998 543  2 3444 889999   99999976  334678999999999999764  


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +.+.+|++|++.+|++++|+++++|++++
T Consensus       414 ~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       414 NAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998863

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=9e-40  Score=288.99  Aligned_cols=254  Identities=33%  Similarity=0.611  Sum_probs=226.9

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      |+++++.....|.|..+++..+|+||.+++++.+++    .+++++|++||+++++|.+.++++++++++++|++||+++
T Consensus       189 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~ll  268 (459)
T PRK11522        189 SATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALL  268 (459)
T ss_pred             hhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            566777777889999999999999999999999863    2479999999999999999999999999999999999999


Q ss_pred             EEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        78 i~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      |+||+++|||++|..|+++.+|+.||++++||++++|++|+|.+++++++++.+.  ...+.+||+++|++++++.++|+
T Consensus       269 I~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~  348 (459)
T PRK11522        269 ILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATIN  348 (459)
T ss_pred             EeccceecCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999988999999999999999999999669999999999888764  34688999999999999999999


Q ss_pred             HHhhccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--C
Q psy6547         156 VILEENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--S  230 (266)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~  230 (266)
                      .++++++.++++++.++++++|++ +..  + .+.. +++.|.   ++.+++.+  ......+++.|+++||++.+.  +
T Consensus       349 ~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~~~i~~-VrG~Gl---~~giel~~--~~~~~~i~~~l~~~Gvl~~~~~~~  421 (459)
T PRK11522        349 VLLEQNLPAQAEQKGDYLLDGFRQ-LAREYPDLVQE-ARGKGM---LMAIEFVD--NEIGYNFASEMFRQRVLVAGTLNN  421 (459)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHH-HHHhCCCceee-EEecee---EEEEEecC--chHHHHHHHHHHHCCeEEEecCCC
Confidence            999999999999999999999998 542  3 3445 889999   99999976  334677999999999999865  4


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+.+|++|++.+|++++++++++|+++++++.
T Consensus       422 ~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~  453 (459)
T PRK11522        422 AKTIRIEPPLTLTIEQCEQVLKAARKALAAMR  453 (459)
T ss_pred             CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999998764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1.6e-39  Score=284.59  Aligned_cols=252  Identities=36%  Similarity=0.597  Sum_probs=222.8

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +.++.+...+.|.|..+++..++|||++++++++  .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  220 (397)
T TIGR03246       143 SVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALI--SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDE  220 (397)
T ss_pred             HhcCCcccccCCCCCCCceEEeCCCCHHHHHHHh--ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            3455666677888999999999999999999999  35799999999999999888899999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|+|+|++|..++...+++.||++++||++++| +|+|++++++++++.+....+..+|+++|++++++.++|+.++.++
T Consensus       221 v~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~  299 (397)
T TIGR03246       221 VQTGVGRTGELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPE  299 (397)
T ss_pred             hhhcCCccccchhhhhcCCCCCEEEeehhhhCC-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            999999999988878889999999999999999 9999999999999988776778899999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      +.+++++++++++++|++ +..  ..+.. +++.|.   ++.+.+.+........+++.|+++|+++.+.+.+++|++|+
T Consensus       300 l~~~~~~~~~~l~~~L~~-l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~  374 (397)
T TIGR03246       300 LLAGVKQRHDLFVDGLEK-INARYNVFSE-IRGKGL---LIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPS  374 (397)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhcCCCeEe-eecCce---EEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCC
Confidence            999999999999999998 543  22344 778888   88888764212256789999999999999877789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.+|++++++++++|++++.+.
T Consensus       375 ~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       375 LVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998763

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.7e-39  Score=277.13  Aligned_cols=259  Identities=35%  Similarity=0.591  Sum_probs=226.7

Q ss_pred             CCccCCcCcc-cccCCCCCCceeecCCC-----------------HHHHHHHHhcC--CCEEEEEEccccCC-CCcccCC
Q psy6547           1 MLITTDPTSY-NEFGPHMPGYNIIPYND-----------------VDALEAKLKSN--PNICAFMVEPIQGE-AGAVVPD   59 (266)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~--~~~~~i~~~~~~~~-~g~~~~~   59 (266)
                      +|.++-+... ..|.++.+++.+++++.                 +++||+++.++  ++++++++||+.+. +|+++++
T Consensus       155 ~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp  234 (449)
T COG0161         155 MSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPP  234 (449)
T ss_pred             eeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCC
Confidence            4566655555 44677888888888664                 57788888763  38999999998666 9999999


Q ss_pred             hHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----C
Q psy6547          60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----G  134 (266)
Q Consensus        60 ~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~  134 (266)
                      +.++++++++|++||+++|+||+.+||||+|..|+.+.+++.||+++++|++++|++|+|.+++++++.+.+..     .
T Consensus       235 ~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f  314 (449)
T COG0161         235 PGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAF  314 (449)
T ss_pred             hHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887754     3


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCccc---
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAIL---  210 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~---  210 (266)
                      .|+.||++||++++++++.|+.++++++.++.++...+++++|++.+. .+.+.+ +++.|+   +..+++..+...   
T Consensus       315 ~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vgd-VR~~Gl---i~~iElv~d~~t~~~  390 (449)
T COG0161         315 MHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGD-VRGLGL---IGAIELVADKATKTP  390 (449)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEE-eeccce---EEEEEEecccccccc
Confidence            789999999999999999999999999999999999999999997333 356777 999999   999998864321   


Q ss_pred             ----hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         211 ----EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       211 ----~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                          -...+.+.+.++|++++|. ++.+-++|++.+|+++++++++++.+++++....
T Consensus       391 f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         391 FEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             hhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                1567888899999999999 6799999999999999999999999999886543

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=8.9e-39  Score=280.70  Aligned_cols=255  Identities=34%  Similarity=0.582  Sum_probs=225.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +++++|.....|.|+.++++.++|||++++++.+  .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DE  224 (406)
T PRK12381        147 SAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALI--DDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDE  224 (406)
T ss_pred             hhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhc--cCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcc
Confidence            4566777777889999999999999999999999  34799999999999999887899999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|+|++++|..++...+++.||++++||++++| +|+|++++++++++.+....+..+++++++.++++.++|+.++.++
T Consensus       225 v~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~  303 (406)
T PRK12381        225 VQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPE  303 (406)
T ss_pred             hhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            999999999877777788999999999999999 9999999999999988877788899999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      +.++++++.+++++.|++ +..  ..+.. +++.|.   ++++.+.+.....+..+++.|+++||++.+.+.+.+|++|+
T Consensus       304 ~~~~~~~~~~~l~~~L~~-l~~~~~~~~~-vrg~Gl---~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~  378 (406)
T PRK12381        304 MLNGVKQRHDWFVERLNT-INARYGLFSE-IRGLGL---LIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPA  378 (406)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhhCCCEEE-EecCeE---EEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCC
Confidence            999999999999999998 542  22333 778899   99999865211246788999999999998876789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         240 LNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +.+|++++++++++|+++++++.++
T Consensus       379 ~~~t~~~i~~~~~~l~~~l~~~~~~  403 (406)
T PRK12381        379 LNISEEEITTGLDRFARACERFVSR  403 (406)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999887654

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=9.6e-39  Score=277.84  Aligned_cols=250  Identities=34%  Similarity=0.590  Sum_probs=223.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      |.++++.....|.|..++++++|+||++++++.++. .++++|++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus       130 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DE  208 (382)
T PLN00144        130 ALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQK-GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDE  208 (382)
T ss_pred             hcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCC-CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            556677777789999999999999999999999943 4799999999999988888899999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|++|+++|..++.+.+++.||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+++++++
T Consensus       209 v~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~  287 (382)
T PLN00144        209 VQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG  287 (382)
T ss_pred             hhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhch
Confidence            999999999877777789999999999999999 9999999999999988877788999999999999999999999899


Q ss_pred             HHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-CCEEEEecc
Q psy6547         162 MIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPA  239 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~  239 (266)
                      +.+++++.++++++.+++.+... .+.. +++.|.   ++|+.+..    ....+++.++++||.+.+.+ .+.+|++|+
T Consensus       288 ~~~~~~~~g~~l~~~l~~~~~~~~~~~~-vrg~G~---~~~l~l~~----~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~  359 (382)
T PLN00144        288 FLASVAKKGEYLRELLRRKLGGNPHVKE-VRGVGL---LVGIQLDV----PAGPLVDACRDSGLLVLTAGKGDVVRLVPP  359 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcee-eecCce---EEEEEecC----ccHHHHHHHHHCCeEEeecCCCCEEEEeCC
Confidence            99999999999999998744433 3434 778999   99999933    45789999999999999864 489999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ...+++++++++++|++++.+.
T Consensus       360 ~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        360 LVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             CccCHHHHHHHHHHHHHHHHhc
Confidence            9899999999999999998753

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.2e-38  Score=281.76  Aligned_cols=258  Identities=27%  Similarity=0.457  Sum_probs=223.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG   61 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~   61 (266)
                      +|+++++..++.|.|+.+++..+++++                 +++++++++++ +++++|++|| +++.+|.++++++
T Consensus       164 ls~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~  243 (453)
T PRK06943        164 LGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPS  243 (453)
T ss_pred             hcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHH
Confidence            456777777788999888888887764                 47788888653 4899999999 5999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GT  135 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~  135 (266)
                      ++++++++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+..      ..
T Consensus       244 yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~  323 (453)
T PRK06943        244 YLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFL  323 (453)
T ss_pred             HHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCcc
Confidence            999999999999999999999999999999999999999999999999999995599999999999887752      24


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc---chH
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI---LEV  212 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~  212 (266)
                      +.+||++||++++++.++|+.++++++.+++++..++++++|+++...+.+.. +++.|+   ++.+++..+..   ...
T Consensus       324 ~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~-vrG~Gl---~~gvel~~~~~~~~~~~  399 (453)
T PRK06943        324 HSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRH-LRQRGT---IFAFDVALDGDAARTFS  399 (453)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eecccc---EEEEEEccCCCcchHHH
Confidence            78899999999999999999999999999999999999999998323345565 899999   99999963211   125


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ..+++.+.++|+++.+.+ +.+|++|++.+|++++++++++|+++++++..
T Consensus       400 ~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  449 (453)
T PRK06943        400 RRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLDATLA  449 (453)
T ss_pred             HHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999998864 57999999999999999999999999988643

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=282.76  Aligned_cols=256  Identities=32%  Similarity=0.501  Sum_probs=220.9

Q ss_pred             CccCCcCcccccCCCCCCceeecCC---------C--------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYN---------D--------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~---------d--------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      |.+++|..+..|.|+.+.+..++++         |        ++++++.+++.  +++++|++||+++.+|.+++++++
T Consensus       158 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~y  237 (459)
T PRK05965        158 GLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGW  237 (459)
T ss_pred             HhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHH
Confidence            4566676677788877777766543         3        26788888642  479999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------CC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GT  135 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~~  135 (266)
                      +++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+..       ..
T Consensus       238 l~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~  317 (459)
T PRK05965        238 LKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVG  317 (459)
T ss_pred             HHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999995599999999999887642       35


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----c-
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----I-  209 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~-  209 (266)
                      +.+||+++|++++++.++|+.++++++.+++++..++++++|++ +.. +.+.. +++.|+   ++.+++....    . 
T Consensus       318 h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~~  392 (459)
T PRK05965        318 HGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDA-LRAHPLVGD-VRGRGL---LGALELVADKATKTPF  392 (459)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-hccCCCEEE-Eeecce---EEEEEEeccccccCCC
Confidence            88999999999999999999999999999999999999999998 443 44555 899999   9999986421    1 


Q ss_pred             ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                          .....+.+.++++|+++.+.+.+++|++|++.+|++++++++++|+++++++.
T Consensus       393 ~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~  449 (459)
T PRK05965        393 DAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVL  449 (459)
T ss_pred             CchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence                12456888899999999987778999999999999999999999999998763

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2e-38  Score=277.37  Aligned_cols=256  Identities=36%  Similarity=0.587  Sum_probs=226.9

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      |++++|..+..|.|+.+++..++++|+++++++++ ..+++++++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus       150 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DE  228 (408)
T PRK04612        150 TATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA-GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDE  228 (408)
T ss_pred             HhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            55677777888998888999999999999999995 34799999999999889888889999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|+||+++|..+....+++.||+.++||++++| +|+|++++++++.+.+....+..+|+++|++++++.++|+.+++++
T Consensus       229 v~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~  307 (408)
T PRK04612        229 IQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQ  307 (408)
T ss_pred             cccCCCcCCchhhhhhcCCCCCEEEEcchhcCC-CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999877766678999999999999999 9999999999888888776788899999999999999999999899


Q ss_pred             HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      +.++++++.++++++|++ +..  ..+.. +++.|+   |+.+++.......+.++++.|.++|+++.+.+.+.+|+.|+
T Consensus       308 l~~~~~~~g~~l~~~l~~-l~~~~~~i~~-vrg~Gl---~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Pp  382 (408)
T PRK04612        308 IAANVARQSAALRAGLEA-LNAEFGVFAQ-VRGRGL---MLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPA  382 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhhCCCeee-eeccce---EEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCC
Confidence            999999999999999998 543  33444 899999   99999864212346788999999999999887799999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         240 LNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +.++++++++++++|++++.+...+
T Consensus       383 l~it~eeid~~l~~l~~~l~~~~~~  407 (408)
T PRK04612        383 LNLTDAELADGLARLRLALADYVAQ  407 (408)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999887655

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=279.73  Aligned_cols=257  Identities=25%  Similarity=0.431  Sum_probs=219.9

Q ss_pred             CccCCcCcccccCCCCCCceeecCC------------------CHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYN------------------DVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~------------------d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      |+++++..+..|.|+.+++.+++++                  +++++++++++  .+++++|++||+++.+|.++++++
T Consensus       162 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~  241 (461)
T PRK07482        162 SLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG  241 (461)
T ss_pred             hccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHH
Confidence            5566676777888888888877654                  25788888853  247999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~  134 (266)
                      ++++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+..       .
T Consensus       242 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~  321 (461)
T PRK07482        242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI  321 (461)
T ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence            999999999999999999999999999999999999999999999999999994499999999998876642       2


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----  209 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----  209 (266)
                      .+.+||++||++++++.++|+.++++++.++++++.++++++|++.... +.+.. +++.|+   ++.+++.....    
T Consensus       322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---m~giel~~~~~~~~~  397 (461)
T PRK07482        322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE-VRGVGM---LAAVEFVADRDDRTP  397 (461)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeecee---EEEEEeccCCCcCCC
Confidence            5788999999999999999999999999999999999999999983333 33444 899999   99999864211    


Q ss_pred             c-----hHHHHHHHHHHCCceeccC-CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 L-----EVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 ~-----~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .     ....++..|+++|+++.+. .++.+|+.|++.+|++|+++++++++++++++.
T Consensus       398 ~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~  456 (461)
T PRK07482        398 FDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL  456 (461)
T ss_pred             CChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1     1457889999999998753 368999999999999999999999999998764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=3.6e-38  Score=276.28  Aligned_cols=246  Identities=44%  Similarity=0.817  Sum_probs=217.5

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +++.+|.....|.|..+++..++++|++++++.+  .+++++|++||++|++|.+..+.+++++|+++|++||+++|+||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DE  227 (396)
T PRK04073        150 SLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI--TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADE  227 (396)
T ss_pred             hhcCCcccccCCCCCCCCceEeCCCCHHHHHHhc--ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            4556666677788888999999999999999999  45789999999999999997788899999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|++|++.|..++.+..++.||++++||++++|.+|+|++++++++++.+....+..++++++++++++.++|+.+++++
T Consensus       228 v~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~  307 (396)
T PRK04073        228 IQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEK  307 (396)
T ss_pred             chhCCCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            99999998877666777889999999999995548999999999999988776788899999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      +.++.+++++++.+.|++ +....+.. .++.|.   |+++.+..    ++.+++++|+++||++.+.+.+++|++|++.
T Consensus       308 l~~~~~~~~~~l~~~L~~-l~~~~i~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~  378 (396)
T PRK04073        308 LPERSLELGEYFKEQLKE-IDNPMIKE-VRGRGL---FIGVELNE----PARPYCEALKEEGLLCKETHETVIRFAPPLV  378 (396)
T ss_pred             HHHHHHHHHHHHHHHHHh-hcCCcccc-eecceE---EEEEEecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcc
Confidence            999999999999999998 65444444 677888   99988865    5678999999999999887678999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTI  258 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~  258 (266)
                      +|++++++++++|++++
T Consensus       379 ~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        379 ITKEELDWAFEKIKAVL  395 (396)
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999999875

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=4.5e-38  Score=275.26  Aligned_cols=247  Identities=38%  Similarity=0.696  Sum_probs=217.3

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      +++.|.....|.|..+++..++|+|++++++.++  +++++|++||+++++|..+++.+++++|+++|++||+++|+||+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv  217 (389)
T PRK01278        140 AGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT--PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEV  217 (389)
T ss_pred             ccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC--CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            4455555566778788899999999999999993  47999999999999998889999999999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      |+||+++|..++.+.+++.||++++||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.++.+++
T Consensus       218 ~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~  296 (389)
T PRK01278        218 QCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF  296 (389)
T ss_pred             ccCCCcCCcceeecccCCCCCEEEEehhccCC-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence            99999988877766778999999999999999 99999999999998888778889999999999999999999887788


Q ss_pred             HHHHHHHHHHHHHHhhccccc-C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         163 IENAYKMGEIFRSELSSPANK-S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      .+++++++++++++|++.... + .+.. .++.|.   ++++.+..    ++.+++++|+++||.+.|.+.+++||+|++
T Consensus       297 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~-v~g~G~---~~~i~~~~----~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~  368 (389)
T PRK01278        297 LDNVQRMGLYLKQKLEGLVDRFPDVIEE-VRGKGL---LLGLKCVV----PNRDLVQALRDEGLLTVGAGDNVVRLLPPL  368 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCceee-EecccE---EEEEEEec----CHHHHHHHHHHCCeEEeecCCCEEEEeCCc
Confidence            999999999999999883222 2 3344 677888   99988754    578899999999999999878999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTINT  260 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .++++++++++++|++++++
T Consensus       369 ~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        369 IITEEEIDEALERLERAAES  388 (389)
T ss_pred             ccCHHHHHHHHHHHHHHHHh
Confidence            99999999999999998865

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=4.2e-38  Score=278.69  Aligned_cols=256  Identities=28%  Similarity=0.504  Sum_probs=218.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      |+++++..+..|.|+.+++..+++++                 ++++++++++  .+++++|++||+++.+|.+.+++++
T Consensus       156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~f  235 (451)
T PRK07678        156 AATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDY  235 (451)
T ss_pred             hcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHH
Confidence            55667777777889999998888653                 2336777752  3489999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTH  136 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~  136 (266)
                      +++++++|++||+++|+||+++||||+|..|.++.+|+.||+++++|+++||++|+|.+++++++++.+..      ..+
T Consensus       236 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h  315 (451)
T PRK07678        236 MKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRH  315 (451)
T ss_pred             HHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCccccccc
Confidence            99999999999999999999999999998888888999999999999999885699999999999987753      258


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-------
Q psy6547         137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-------  208 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-------  208 (266)
                      .+||++||++++++.++|+.++++++.++++++.+++++.|++.+.. ..+.. +++.|.   |+.+++..+.       
T Consensus       316 ~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vrg~Gl---~~~i~~~~~~~~~~~~~  391 (451)
T PRK07678        316 VNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD-IRGKGL---LVGIELVNDKETKEPAD  391 (451)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-EEeece---EEEEEEecCCcccCcCc
Confidence            89999999999999999999999999999999999999999763433 33444 899999   9999985321       


Q ss_pred             cchHHHHHHHHHHCCceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ......++..|.++|+++.+.+      .+.+|++|++.+|+++|++++++++++++++
T Consensus       392 ~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        392 NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             hHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            1225678899999999997642      3789999999999999999999999998764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.9e-38  Score=277.28  Aligned_cols=256  Identities=27%  Similarity=0.475  Sum_probs=221.1

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG   61 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~   61 (266)
                      +|+++++..++.|.|+.+++.++|+++                 ++.+++.++++ +++++|++|| +++.+|.++++++
T Consensus       179 ls~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~  258 (472)
T PRK08742        179 LAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPA  258 (472)
T ss_pred             hhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHH
Confidence            356667777788999999999998864                 46777888543 4899999999 6999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GT  135 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~  135 (266)
                      ++++++++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+..      ..
T Consensus       259 fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~  338 (472)
T PRK08742        259 YLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFL  338 (472)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccC
Confidence            999999999999999999999999999999999999999999999999999995599999999999877642      24


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-----  209 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----  209 (266)
                      +.+||++||++++++.++|+.++++++.++.++..+++++.++. +.. +.+.. +++.|+   ++.+++..+..     
T Consensus       339 h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~-~~~~~~i~d-vRG~Gl---~~giel~~~~~~~~~~  413 (472)
T PRK08742        339 HSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQ-IGEHPHVAD-VRQAGM---VVAFELTRGGNKRTPF  413 (472)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HhcCCCeee-Eeccce---EEEEEeccCccccccC
Confidence            78999999999999999999999999999999999999988877 543 44555 999999   99999864211     


Q ss_pred             ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                          .....+.++++++|+++.+. ++.+||.|++..|++++++++++|++++++..
T Consensus       414 ~~~~~~~~~~~~~~~~~Gll~~~~-g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        414 PPAARVGLHAYRAALARGVVLRPL-GDVLYWMPPYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             CchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                01356788899999999987 47999999999999999999999999998754

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=5.9e-38  Score=278.04  Aligned_cols=255  Identities=25%  Similarity=0.416  Sum_probs=219.3

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC----CCEEEEEEccccCCCCcccCCh
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      |+++++..++.|.|+.+++..+++++                 ++++++++++.    +++++|++||+++.+|.+++++
T Consensus       172 s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~  251 (464)
T PRK06938        172 SLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPI  251 (464)
T ss_pred             hhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCH
Confidence            45566666677888888888887652                 57788888642    2699999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY  140 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  140 (266)
                      +++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++|| +|+|.+++++++ +.+....+.+||
T Consensus       252 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~PlsAv~~~~~~-~~~~~~~~~~T~  329 (464)
T PRK06938        252 EWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPLAVVVYREWL-DTWQPGAHAGTF  329 (464)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCC-CceEEEeehhHh-hccCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999 999999998875 666666789999


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----------
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----------  209 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----------  209 (266)
                      ++||++++++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|+   |+.+++.....          
T Consensus       330 ~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-VrG~Gl---m~gie~~~~~~~~~~~~~~~~  405 (464)
T PRK06938        330 RGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD-VRGRGL---MLGVEIVDPQGEPDALGHPPA  405 (464)
T ss_pred             CcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEeccCcccccccccCCc
Confidence            9999999999999999999999999999999999999983333 44455 999999   99999854211          


Q ss_pred             --chHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 --LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 --~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                        .....+++.|.++|+++.+.+  ++.+|+.|++.+|+++++++++++++++.+..
T Consensus       406 ~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~  462 (464)
T PRK06938        406 NGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV  462 (464)
T ss_pred             cHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence              124568889999999998753  58999999999999999999999999998754

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.3e-38  Score=277.58  Aligned_cols=254  Identities=27%  Similarity=0.464  Sum_probs=221.7

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~~   62 (266)
                      |+++++..+..|.|+.++++.+|+++                 ++++++.++++ +++++|++|| +++.+|.+.+++++
T Consensus       158 s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~y  237 (466)
T PRK07030        158 SVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVY  237 (466)
T ss_pred             hccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHH
Confidence            55677777788899888898888765                 46678888653 4899999999 69999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC-------CCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV-------PGT  135 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~-------~~~  135 (266)
                      +++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+.       ...
T Consensus       238 l~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~  317 (466)
T PRK07030        238 LKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFL  317 (466)
T ss_pred             HHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999559999999999987764       235


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-----  209 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----  209 (266)
                      +.+||++||++++++.++|+.++++++.++.+++.+++++.|++ +.. +.+.. +++.|+   ++.+++.....     
T Consensus       318 h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~~  392 (466)
T PRK07030        318 HSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAH-LADHPHVAE-VRQTGM---ILAIEMVQDKASKTPY  392 (466)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhcCCCEEE-eEecee---EEEEEeccCccccccC
Confidence            88999999999999999999999999999999999999999998 543 44555 899999   99999854211     


Q ss_pred             ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                          .....+.+++.++|+++.+. ++.+|+.|++.+|++++++++++++++++++
T Consensus       393 ~~~~~~~~~i~~~~~~~Gvl~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        393 PWQERRGLKVYQHALERGALLRPL-GSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             cchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                01356888999999999887 4799999999999999999999999999886

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=9.4e-38  Score=278.62  Aligned_cols=254  Identities=28%  Similarity=0.432  Sum_probs=217.2

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      ++++.+...+.|.+..+.+.++++++                  .++|++++.+ + +++++|++||+++++|.+.++++
T Consensus       202 slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~  281 (504)
T PLN02760        202 SLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPAT  281 (504)
T ss_pred             hccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHH
Confidence            45666666677777777777776543                  2457777742 2 37999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~  134 (266)
                      ++++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+..       .
T Consensus       282 yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~  361 (504)
T PLN02760        282 YFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF  361 (504)
T ss_pred             HHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCc
Confidence            999999999999999999999999999999999999999999999999999985699999999999987753       2


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----  209 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----  209 (266)
                      .+.+||+++|+++++++++|+.++++++.++++++.+++++.|++ +.. ..+.. +++.|+   ++.+++.+...    
T Consensus       362 ~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~  436 (504)
T PLN02760        362 AHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKA-FSGSPIIGE-IRGTGL---ILGTEFVDNKSPNDP  436 (504)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HhcCCCeee-EEeCce---EEEEEEecCCccccc
Confidence            578999999999999999999999999999999999999999998 544 33444 899999   99999865211    


Q ss_pred             -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                           .-...+++.|+++||++.+. ++.+|++|++.+|+++|++++++++++++++
T Consensus       437 ~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        437 FPAEWGVGAYFGAECKKRGMLVRVA-GDNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             ccchhHHHHHHHHHHHhCCcEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                 01556888999999999886 4689999999999999999999999998776

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.4e-37  Score=272.94  Aligned_cols=244  Identities=37%  Similarity=0.643  Sum_probs=216.9

Q ss_pred             cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      +.....|.++..+++.+|++|++++++.+  .+++++|++||++|++|.+.++.+++++|+++|++||+++|+||+|+||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~  229 (398)
T PRK03244        152 PAKRAPFEPLPGGVEHVPYGDVDALAAAV--DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGI  229 (398)
T ss_pred             cccccCCCCCCCCceEeCCCCHHHHHHhh--cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            34456677888899999999999999999  3479999999999999999888899999999999999999999999999


Q ss_pred             CCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        87 ~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      +++|..+.+...++.||++++||++++| +|+|++++++++++.+....+..+|+.++++++++.++|+.++.+++.+++
T Consensus       230 gr~g~~~~~~~~~~~pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~  308 (398)
T PRK03244        230 GRTGAWFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENA  308 (398)
T ss_pred             cccchHHhhhhhCCCCCEEEEchhhhCC-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence            9999876667788999999999999999 999999999999888887678889999999999999999998888899999


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  246 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~  246 (266)
                      +++++++++.|++ ++.+.+.. .++.|.   ++++.++.   ..+.+++++|.++||++.+...+.+|++|+..++++|
T Consensus       309 ~~~~~~l~~~L~~-~~~~~~~~-v~g~g~---~~~i~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~  380 (398)
T PRK03244        309 ERLGEQLRAGIEA-LGHPLVDH-VRGRGL---LLGIVLTA---PVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQ  380 (398)
T ss_pred             HHHHHHHHHHHHh-cCCCceee-EeeccE---EEEEEEec---cHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHH
Confidence            9999999999998 55433333 677888   99999865   2567899999999999998767999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6547         247 LREGLDIIINTINTM  261 (266)
Q Consensus       247 i~~~~~~l~~~~~~~  261 (266)
                      +++++++|++++.+.
T Consensus       381 i~~~~~~l~~~l~~~  395 (398)
T PRK03244        381 VDAFVAALPAILDAA  395 (398)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999764

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=1.5e-37  Score=276.78  Aligned_cols=256  Identities=48%  Similarity=0.833  Sum_probs=223.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +|.++++...+.|.|..+++..++|+|+++++++++.+ +++++|++||+++++|.+.++.+++++|+++|++||+++|+
T Consensus       184 ~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~  263 (474)
T PLN02624        184 ISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIA  263 (474)
T ss_pred             hhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            35667787888899999999999999999999999654 47999999999999999988888999999999999999999


Q ss_pred             eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ||+|+||+++|..++.+.+++.||++++||++++|++|+|+++.++++++.+....+..|++++++.++++.++|+.++.
T Consensus       264 DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~  343 (474)
T PLN02624        264 DEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD  343 (474)
T ss_pred             eccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999877777788999999999999977689999999999888887777888999999999999999999988


Q ss_pred             ccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHHHCCceeccCCCCEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMKDAGLVTKPISNNII  234 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~~~i  234 (266)
                      +++.+++.++.+.++++|++ +..  + .+.. +++.|.   ++.+.+....  ...+.+++++|.++||++.|.+.+++
T Consensus       344 ~~l~~~~~~~~~~l~~~L~~-l~~~~~~~i~~-vrg~G~---~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~l  418 (474)
T PLN02624        344 EKLAERSAKLGQELRDQLQK-IQKQFPKLIKE-VRGRGL---LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTII  418 (474)
T ss_pred             chHHHHHHHHHHHHHHHHHH-HHHhCCCceEE-EEeeEE---EEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEE
Confidence            88999999999999999988 542  2 2444 678888   8888775421  13467899999999999999888999


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ||+|++.+|++++++++++|++++..-
T Consensus       419 R~~p~l~~t~e~id~~l~~L~~~l~~~  445 (474)
T PLN02624        419 RLAPPLSISEDELQECSKALSDVLEHD  445 (474)
T ss_pred             EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987664

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=272.07  Aligned_cols=249  Identities=31%  Similarity=0.564  Sum_probs=216.8

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ++++++..+..|.|..+++..++++|++++++.++  +++++|++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus       143 ~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DE  220 (395)
T PRK03715        143 SASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT--DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDE  220 (395)
T ss_pred             hhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC--CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            45566667777888888899999999999999993  4799999999999999998899999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|+|||++|..|+++.+++.||++++||++++| +|+|.+++++++. .+....+.+||+++|++++++.++|+.+++++
T Consensus       221 v~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G-~p~~av~~~~~i~-~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~  298 (395)
T PRK03715        221 VQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG  298 (395)
T ss_pred             cccCCCCCcchhhHhhcCCCCceeeehhhhhCC-cceEEEEEccccc-cccCCCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999998888899999999999999999 9999999998886 33444578899999999999999999999889


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC---CceeccCCCCEEEEec
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA---GLVTKPISNNIIRLSP  238 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~---gi~~~~~~~~~iR~~~  238 (266)
                      +.++++++.++++++|+++.....+.. +++.|.   |+.+++.+.   ....+.+.+.+.   |+++.+...+.+|++|
T Consensus       299 l~~~~~~~g~~l~~~L~~l~~~~~i~~-vrG~Gl---m~~i~l~~~---~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p  371 (395)
T PRK03715        299 FLEGVRARGEYLKEKLLELSEERGLEG-ERGEGL---LRALLLGKD---IGPQIVEKARDMQPDGLLLNAPRPNLLRFMP  371 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcCe-EEccee---EEEEEecCc---hHHHHHHHHHhccCCCEEEeecCCCEEEEeC
Confidence            999999999999999998322334555 889999   999999761   234555555555   9999876678999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++.+|++++++++++|+++++++
T Consensus       372 ~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        372 ALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             CcccCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998764

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-37  Score=272.72  Aligned_cols=257  Identities=28%  Similarity=0.487  Sum_probs=217.1

Q ss_pred             CCccCCcCcccccCCCCCCceeecCC----------CHHHH--------HHHHh-c-CCCEEEEEEccccCCCCcccCCh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYN----------DVDAL--------EAKLK-S-NPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~----------d~~~l--------~~~l~-~-~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      +|+++++.....|.|..+++..++++          |++++        |++++ + .+++++|++||+++.+|.+++++
T Consensus       154 ~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~  233 (449)
T PRK07481        154 ASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPA  233 (449)
T ss_pred             hccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCH
Confidence            35667777777788988888887643          44443        44443 2 24799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------  133 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------  133 (266)
                      +++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+..       
T Consensus       234 ~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~  313 (449)
T PRK07481        234 NFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGA  313 (449)
T ss_pred             HHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccc
Confidence            9999999999999999999999999999999888889999999999999999995599999999999887753       


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----
Q psy6547         134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----  208 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----  208 (266)
                      ..+.+||++||++++++.++|+.++++++.+++++..+++++.|+++... +.+.. +++.|+   |+.+++..+.    
T Consensus       314 ~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---m~gi~l~~~~~~~~  389 (449)
T PRK07481        314 IMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGD-VRGKGL---MLALDLVADKATRE  389 (449)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEE-Eeecce---EEEEEecccccccC
Confidence            25788999999999999999999999999999999999999999983332 33444 899999   9999985321    


Q ss_pred             c-----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         209 I-----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       209 ~-----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .     .....+.++|+++|+++.+.+ +.+|++|++.+|++++|+++++++++++++.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        390 PIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             CCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            0     124568888999999998874 5699999999999999999999999998754

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=3.4e-37  Score=270.57  Aligned_cols=247  Identities=29%  Similarity=0.473  Sum_probs=215.1

Q ss_pred             CcccccCCCCCCceeecC-----------CCHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           8 TSYNEFGPHMPGYNIIPY-----------NDVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~-----------~d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      ..++.|.|+.++++++++           +|++++++.+++. +++++|++||+ ++.+|++.++++++++|+++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g  239 (428)
T PRK07986        160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG  239 (428)
T ss_pred             hhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence            345667888888777653           4678889989653 37999999996 8888888889999999999999999


Q ss_pred             CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHHHHHH
Q psy6547          75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKL  149 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a  149 (266)
                      +++|+||+++|||++|..|+.+.+++.||++++||+++||++|+|.+++++++++.+...     .+.+||+++|+++++
T Consensus       240 ~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aa  319 (428)
T PRK07986        240 ILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAV  319 (428)
T ss_pred             CEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHH
Confidence            999999999999999999899999999999999999999966999999999999888642     378899999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      +.++|+.++++++.++++++.+++++.|++....+.+.. +++.|.   ++.+.+..  ...+..+.+.|+++|+++.+.
T Consensus       320 a~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~-vRg~Gl---~~~ve~~~--~~~~~~~~~~l~~~Gl~~~~~  393 (428)
T PRK07986        320 ANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVAD-VRVLGA---IGVVETTR--PVNMAALQRFFVEQGVWIRPF  393 (428)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eeccce---EEEEEeCC--cccHHHHHHHHHHCCcEEEec
Confidence            999999999999999999999999999998323344555 899999   99999876  334678999999999999887


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      + +.+|++|++.+|++++++++++|++++++.
T Consensus       394 g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  424 (428)
T PRK07986        394 G-KLIYLMPPYIILPEQLQRLTAAVNRAVQDE  424 (428)
T ss_pred             C-CEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            4 799999999999999999999999998653

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=4.3e-37  Score=270.10  Aligned_cols=251  Identities=35%  Similarity=0.579  Sum_probs=216.9

Q ss_pred             cCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ++++.....+.|...++++++|||++++++.+  .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~  227 (403)
T PRK05093        150 GGQPKYSDGFGPKPADITHVPFNDLAAVKAVI--DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQ  227 (403)
T ss_pred             cCChhhhhcCCCCCCCcEEeCCCCHHHHHHHh--cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence            44454455677888899999999999999999  3479999999999999988789999999999999999999999999


Q ss_pred             cCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHH
Q psy6547          84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  163 (266)
                      +++++.|..++...+++.||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.+..+++.
T Consensus       228 ~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~  306 (403)
T PRK05093        228 TGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVL  306 (403)
T ss_pred             hCCCCCccchhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHH
Confidence            9998888766666778899999999999999 999999999999998887677788999999999999999998878899


Q ss_pred             HHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         164 ENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      ++++++++++++.|++ +.. ..+...+++.|.   ++++.++.....++.+|+.+|+++||.+.+.+.+++|+++++.+
T Consensus       307 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~G~---~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~  382 (403)
T PRK05093        307 EGVKARRQRFVDGLQK-INQKYGVFSEIRGMGL---LIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVI  382 (403)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhCCCeEeEeeCce---EEEEEecCcchhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCC
Confidence            9999999999999998 543 222222667888   99999865211256789999999999999877799999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINTM  261 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++++++++++|++++.++
T Consensus       383 ~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        383 EEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=2.4e-37  Score=271.46  Aligned_cols=252  Identities=27%  Similarity=0.471  Sum_probs=217.9

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC--------HHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND--------VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL   69 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d--------~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l   69 (266)
                      |+++++.....|.|..++++.+|+++        +++++++++++    +++++|++||+++++|.++++++++++|+++
T Consensus       144 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~l  223 (412)
T TIGR02407       144 SVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKL  223 (412)
T ss_pred             HhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHH
Confidence            45667777788888888999999853        77889998643    3689999999999999988999999999999


Q ss_pred             HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      |++||+++|+||+++||||+|..|+++.+++.||++++||++++ | +|+|++++++++ +.+....+.+||++|+++++
T Consensus       224 c~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~a  301 (412)
T TIGR02407       224 CRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFV  301 (412)
T ss_pred             HHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCc-cceeEEEEchhh-hccCCCccCCCCCccHHHHH
Confidence            99999999999999999999998888889999999999999998 9 999999998886 66655678899999999999


Q ss_pred             HHHHHHHH-HhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         149 LAMTALDV-ILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       149 a~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      ++.++++. ++++++.+++++.+++++++++..... +.....+++.|.   ++|+.+++  ......+.+.|.++||++
T Consensus       302 aa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl---~~~l~l~~--~~~~~~~~~~~~~~Gv~v  376 (412)
T TIGR02407       302 TATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGL---MQGIECGD--GDLAGKIAKAAFENGLII  376 (412)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeeccee---EEEEEecC--hHHHHHHHHHHHHCCCEE
Confidence            99999995 777889999999999999999873332 212233788999   99999976  345678999999999999


Q ss_pred             ccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 KPIS--NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .+.+  .+.+|++|++.+|++++++++++|++++++
T Consensus       377 ~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       377 ETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             eccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            8653  479999999999999999999999998863

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=271.59  Aligned_cols=259  Identities=31%  Similarity=0.508  Sum_probs=219.2

Q ss_pred             CCccCCcCcccccCCCCCCceeecCC----C--------------HHHHHHHHhc--CCCEEEEEEccccC-CCCcccCC
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYN----D--------------VDALEAKLKS--NPNICAFMVEPIQG-EAGAVVPD   59 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~----d--------------~~~l~~~l~~--~~~~~~i~~~~~~~-~~g~~~~~   59 (266)
                      +|+++++.....|.|..+++.+++++    +              ++++++++.+  .+++++|++||+++ .+|.++++
T Consensus       140 ~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~  219 (443)
T PRK07483        140 LAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPV  219 (443)
T ss_pred             hhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCC
Confidence            35666777777888888888888643    3              2677776643  24799999999997 57889999


Q ss_pred             hHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC----C
Q psy6547          60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----T  135 (266)
Q Consensus        60 ~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~  135 (266)
                      ++++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+...    .
T Consensus       220 ~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~  299 (443)
T PRK07483        220 PGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQ  299 (443)
T ss_pred             HHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccc
Confidence            999999999999999999999999999999999999999999999999999999944999999999998877532    4


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----c-
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----I-  209 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~-  209 (266)
                      +.+||++||++++++.++|+.++++++.+++++..++++++|++.... +.+.. +++.|+   |+.+++....    . 
T Consensus       300 h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vRG~Gl---m~gie~~~~~~~~~~~  375 (443)
T PRK07483        300 HGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD-IRGRGL---FVGVELVADRATKAPF  375 (443)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee-Eeeccc---EEEEEEeecccccCCC
Confidence            789999999999999999999999999999999999999999873333 33444 899999   9999986421    0 


Q ss_pred             ----chHHHHHHHHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         210 ----LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       210 ----~~~~~~~~~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                          .....+++.++++|+++.+.+       ++.+||+|++.+|++++|+++++|++++++...
T Consensus       376 ~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        376 DPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             CchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                124578899999999998653       479999999999999999999999999987643

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=5.4e-37  Score=272.05  Aligned_cols=255  Identities=26%  Similarity=0.444  Sum_probs=220.5

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      |+++.+..++.|.|..+++.++++++                  .+++++++.+  .+++++|++||+++++|+++++++
T Consensus       160 s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~  239 (460)
T PRK06105        160 SLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKT  239 (460)
T ss_pred             eccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHH
Confidence            45666777778888888899988764                  3678888843  247999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~  134 (266)
                      ++++++++|++||+++|+||+++|||++|..|+++.+++.||++++||+++||++|+|++++++++++.+..       .
T Consensus       240 yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~  319 (460)
T PRK06105        240 YWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTF  319 (460)
T ss_pred             HHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCccc
Confidence            999999999999999999999999999999889889999999999999999885699999999999887653       1


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----  209 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----  209 (266)
                      .+.+|+++||++++++.++|+.++++++.++++++.++++++|++ +.. +.+.. +++.|+   ++.+++.....    
T Consensus       320 ~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~  394 (460)
T PRK06105        320 GHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRA-LADHPLVGE-VRGVGL---IAAVELVADKATKTP  394 (460)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hhcCCCeEE-EEecce---EEEEEEecCcccCCC
Confidence            378899999999999999999999999999999999999999999 543 33444 899999   99999853211    


Q ss_pred             -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                           ..+..++..++++|+++.+. ++.+|++|++.+|++++++++++|+++++++.
T Consensus       395 ~~~~~~~a~~i~~~~~~~Gvl~~~~-g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  451 (460)
T PRK06105        395 FEPPGKVGARANAAAHEHGVISRAM-GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA  451 (460)
T ss_pred             CCchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence                 11356888899999999886 47999999999999999999999999998764

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=4.3e-37  Score=264.43  Aligned_cols=239  Identities=36%  Similarity=0.611  Sum_probs=211.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      +++++++..+..|.|..+++..+++||++++++.+.  +++++|++||+++.+|.++++++++++++++|++||+++|+|
T Consensus       125 ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~--~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~D  202 (364)
T PRK04013        125 LSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT--KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIAD  202 (364)
T ss_pred             ccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhc--CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            356777888888999999999999999999999993  579999999999999999999999999999999999999999


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE  160 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  160 (266)
                      |+++|+ |+|..|+++.+++.||+++++|++++| +|+|.++.+.++    ....+.+||++||++++++.++|+.++++
T Consensus       203 Ev~tG~-RtG~~~a~~~~gv~PDiv~~gK~lggG-~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~  276 (364)
T PRK04013        203 EVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNG-VPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRE  276 (364)
T ss_pred             chhhcC-CCCchhHHHhcCCCCCEEEecccccCC-ceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            999999 999999999999999999999999999 999999988765    23468899999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      ++.++.++.   +    ++ +..+.+.. +++.|+   |+.+++..    ....+.+.++++|+++.+.+.+.+||.|++
T Consensus       277 ~l~~~~~~~---l----~~-l~~~~v~~-vRG~Gl---~~gve~~~----~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl  340 (364)
T PRK04013        277 RLVEKAGEK---F----IE-IKGERVVT-TRGRGL---MIGIVLKK----PVGKYVEELQNRGYLVHTAGQRVIRLLPPL  340 (364)
T ss_pred             cHHHHHHHH---H----HH-hccCccee-eeeCcE---EEEEEeCC----cHHHHHHHHHhCCcEEeeCCCCEEEEeCCc
Confidence            998888764   2    22 22234555 999999   99999965    356789999999999998767899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         241 NITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      .+|++++++++++|++++++..+
T Consensus       341 ~it~~~i~~~~~~l~~~l~~~~~  363 (364)
T PRK04013        341 IISKDTMEEAKSAIEGVINDILG  363 (364)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999988654

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4e-37  Score=272.87  Aligned_cols=256  Identities=34%  Similarity=0.568  Sum_probs=220.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCC-----------------CHHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG   61 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~   61 (266)
                      +|+++++..++.|.|+.+++..+|++                 +++++++.++++ +++++|++|| +++.+|.++++++
T Consensus       166 ls~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~  245 (460)
T PRK06916        166 VSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKG  245 (460)
T ss_pred             HhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHH
Confidence            35667777778899988888888765                 246678888654 4899999999 6999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~  134 (266)
                      ++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+..       .
T Consensus       246 fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~  325 (460)
T PRK06916        246 YLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTF  325 (460)
T ss_pred             HHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCcc
Confidence            999999999999999999999999999999999999999999999999999995599999999999876642       3


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----  209 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----  209 (266)
                      .+.+||+++|++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+   |+.+++.++..    
T Consensus       326 ~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---m~giel~~~~~~~~~  400 (460)
T PRK06916        326 FHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLED-LFALKHVGD-IRQLGL---MVGIELVKNKETKEP  400 (460)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hhcCCCeEE-eecCCc---eeeEEeecccccccC
Confidence            578899999999999999999999999999999999999999998 543 33445 899999   99998864211    


Q ss_pred             --c---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 --L---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 --~---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                        .   ....+++.|+++||++.+. ++.+|+.|++.+|++++++++++|+++++++.
T Consensus       401 ~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        401 FEWTERVGVQVCKRSRELGMLTRPL-GNTIVFMPPLASTIDELDEMLRILYKAISDVT  457 (460)
T ss_pred             CCchhhHHHHHHHHHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence              0   1357889999999999886 47999999999999999999999999998754

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.9e-37  Score=269.72  Aligned_cols=255  Identities=30%  Similarity=0.551  Sum_probs=219.7

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCCh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      +|+++++..++.|.|+.+++.++|++.                  +++|+++++..  +++++|++||+++++|.+.+++
T Consensus       156 ls~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~  235 (442)
T PRK13360        156 ISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPK  235 (442)
T ss_pred             hhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCH
Confidence            356777777888888888888888762                  46888888642  4799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------  133 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------  133 (266)
                      +++++|+++|++||+++|+||+++|||++|..|.++.+++.||++++||++++|++|+|.+++++++++.+..       
T Consensus       236 ~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~  315 (442)
T PRK13360        236 GYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE  315 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccc
Confidence            9999999999999999999999999999999888888999999999999999886799999999999887643       


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc---c
Q psy6547         134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA---I  209 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~  209 (266)
                      ..+.+||+++|++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+   ++.+.+....   .
T Consensus       316 ~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---~~~~~l~~~~~~~~  390 (442)
T PRK13360        316 FFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHS-LRDAPHVID-IRNLGL---VGAVELAPRDGKPG  390 (442)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-hhcCCCeee-eeccce---EEEEEEecCCCCcc
Confidence            2467899999999999999999999889999999999999999998 543 34444 889999   8888775421   1


Q ss_pred             chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..+.++.++|.++||++.+. ++.+||+|++.+|++++|+++++|+++++++
T Consensus       391 ~~~~~~~~~l~~~Gvl~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        391 KRAYEVFLKCFEKGLMIRYT-GDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             hhHHHHHHHHHHCCcEEEec-CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            23567888999999999876 4789999999999999999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=4.6e-37  Score=272.24  Aligned_cols=256  Identities=29%  Similarity=0.448  Sum_probs=217.2

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCH-------------HHH----HHHHhc----CCCEEEEEEccccCCCCcccCCh
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDV-------------DAL----EAKLKS----NPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~-------------~~l----~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      |+++++..++.|.|+.+++..+|+++.             +++    ++.+++    .+++++|++||+++.+|.+++++
T Consensus       166 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~  245 (459)
T PRK06931        166 AVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPV  245 (459)
T ss_pred             hhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCH
Confidence            456777777788999999999988752             333    334421    23699999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY  140 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  140 (266)
                      +++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++| +|+|.+++++++ +.+....+.+||
T Consensus       246 ~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi~av~~~~~~-~~~~~~~~~~T~  323 (459)
T PRK06931        246 EWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPLAVLGIKKEF-DAWQPGGHTGTF  323 (459)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCC-cceeeeeeHHHH-hhccCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999 999998887764 666556789999


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----------  208 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----------  208 (266)
                      ++||+++++++++|+.++++++.+++++..++++++|++.... +.+.. +++.|+   |+.+++.+..           
T Consensus       324 ~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vrG~Gl---m~giel~~~~~~~~~~~~~~~  399 (459)
T PRK06931        324 RGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN-VRGRGL---MIGIEIVDERQPADAMGSYPA  399 (459)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe-EecCce---EEEEEEccCcccccccccCCc
Confidence            9999999999999999999999999999999999999993333 44444 999999   9999985421           


Q ss_pred             -cchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 -ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 -~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                       ..-...+...|.++|+++.+.+  ++.+|+.|++.+|+++++++++++++++.+..+
T Consensus       400 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        400 DGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             cHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence             0124568888999999998653  588999999999999999999999999987543

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.7e-37  Score=269.46  Aligned_cols=249  Identities=28%  Similarity=0.501  Sum_probs=215.6

Q ss_pred             cCcccccCCCCCCceeecCC-----------CHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-----------d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      +..+..|.|..+.+.++|++           ++++|++.++++ +++++|++||+ ++.+|.++++++++++++++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~  240 (429)
T PRK06173        161 TGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY  240 (429)
T ss_pred             hhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence            33556677777778888765           366788888643 48999999996 999999999999999999999999


Q ss_pred             CCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----CCCCCCCCCcHHHHH
Q psy6547          74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACK  148 (266)
Q Consensus        74 g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  148 (266)
                      |+++|+||+|+|||++|..|+.+.+++.||++++||+++||++|++.++.++++++.+..     ..+++|+.++|++++
T Consensus       241 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~a  320 (429)
T PRK06173        241 GVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACA  320 (429)
T ss_pred             CCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence            999999999999999999888888999999999999999995699999999998887743     247788999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      ++.++|+.++++++.++++++.+++++.|++....+.+.. +++.|.   ++.+.+.+  ..++..+++.|+++||++.+
T Consensus       321 aa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~-vRg~Gl---~~~iel~~--~~~~~~i~~~l~e~Gi~v~~  394 (429)
T PRK06173        321 IAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAE-VRVLGA---IGVVEMKE--PVNMATLQPRFVEHGIWVRP  394 (429)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeee-eeccce---EEEEEeCC--cccHHHHHHHHHHCCeEEEe
Confidence            9999999999989999999999999999997223344444 788999   99999976  34567899999999999988


Q ss_pred             CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         229 ISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       229 ~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+ +.+|+.|++..|++++++++++|++++.+.-
T Consensus       395 ~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~  427 (429)
T PRK06173        395 FG-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY  427 (429)
T ss_pred             cC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            74 7999999999999999999999999998753

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=270.03  Aligned_cols=255  Identities=29%  Similarity=0.518  Sum_probs=217.1

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      |+++++..+..|.|+.+.+.++++++                 ++.+++.+.+  .+++++|++||+++++|.+.+++++
T Consensus       163 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~y  242 (466)
T PRK07036        163 SLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGY  242 (466)
T ss_pred             cccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHH
Confidence            55667777777888888888877654                 2446666643  2489999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccc-cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G  134 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~-~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~  134 (266)
                      +++|+++|++||+++|+||+++||||+|..|..+ .+++.||+++++|++++|++|+|.+++++++++.+..       .
T Consensus       243 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~  322 (466)
T PRK07036        243 HARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVF  322 (466)
T ss_pred             HHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCccc
Confidence            9999999999999999999999999999878877 6899999999999999995599999999999887652       3


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----  209 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----  209 (266)
                      .+++||++||++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+   ++.+++.++..    
T Consensus       323 ~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~~ve~~~~~~~~~~  397 (466)
T PRK07036        323 THGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLAS-LRELPLVGD-VRGDHL---MACVECVADKGSKAL  397 (466)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-hccCCCEEE-EEeece---EEEEEEccCccccCC
Confidence            577899999999999999999999999999999999999999988 544 33444 899999   99999864211    


Q ss_pred             -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                           .....+...|+++|+++.+.+ +.+|++|++.+|++++++++++++++++++.
T Consensus       398 ~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~  454 (466)
T PRK07036        398 LPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIEETA  454 (466)
T ss_pred             CCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence                 124568889999999998864 7899999999999999999999999988764

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=8e-37  Score=270.09  Aligned_cols=256  Identities=28%  Similarity=0.536  Sum_probs=218.7

Q ss_pred             ccCCc-CcccccCCCCCCceeecCCCH-----------------HHHHHHHhc---CCCEEEEEEccccCCCCcccCChH
Q psy6547           3 ITTDP-TSYNEFGPHMPGYNIIPYNDV-----------------DALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         3 ~~~~~-~~~~~~~~~~~~v~~~~~~d~-----------------~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      +++++ ..+..|.|..++++.+|+++.                 +++++++++   .+++++|++||+++++|.+.++++
T Consensus       149 ~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~  228 (445)
T PRK08593        149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPG  228 (445)
T ss_pred             hcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHH
Confidence            44433 345668899999999987753                 456665543   247999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG  141 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~  141 (266)
                      ++++|+++|++||+++|+||+|+|||++|..+..+.+++.||++++||++++| +|+|++++++++++.+....+..|++
T Consensus       229 yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p~gav~~~~~i~~~~~~~~~~~T~~  307 (445)
T PRK08593        229 YFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEAPAHLFTTG  307 (445)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC-cccEEEEEcHHHHhhhccCCCCCCCC
Confidence            99999999999999999999999999999888888889999999999999999 99999999999998887656778999


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYD  214 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~  214 (266)
                      ++|++++++.++|+.++++++.++++++.+++++.|++.... +.+.. +++.|+   ++.+.+....      .....+
T Consensus       308 ~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---~~gi~l~~~~~~~~~~~~~~~~  383 (445)
T PRK08593        308 ANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGD-VRGYGL---SIGIDIVSDKKLKTRDNEAALK  383 (445)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEE-Eeccce---EEEEEEecCCCcCCCcHHHHHH
Confidence            999999999999999999999999999999999999983333 34444 899999   9998885421      123567


Q ss_pred             HHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         215 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       215 ~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +++.|.++||++.+.+.+.+|++|++.+|++++++++++++++++++..
T Consensus       384 ~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        384 ICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             HHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999998766789999999999999999999999999988654

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=8e-37  Score=270.48  Aligned_cols=246  Identities=33%  Similarity=0.603  Sum_probs=209.2

Q ss_pred             cccccCCCCCCceeecCC----C---------------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547           9 SYNEFGPHMPGYNIIPYN----D---------------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL   69 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~----d---------------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l   69 (266)
                      ....|.|+.+++..++++    +               ++.+++.+. .+++++|++||+++++|.+.++++++++|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~l  248 (443)
T PRK06058        170 YKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG-ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEW  248 (443)
T ss_pred             cccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC-CCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            456677777887776532    2               122333331 24799999999999999998999999999999


Q ss_pred             HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547          70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL  149 (266)
Q Consensus        70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  149 (266)
                      |++||+++|+||+++||+|+|..|+++.+++.||+++++|++++| +|+|++++++++++.+....+.+||++||+++++
T Consensus       249 c~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G-~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aa  327 (443)
T PRK06058        249 CRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAA  327 (443)
T ss_pred             HHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999988888899999999999999999 9999999999999988877789999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCC
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAG  223 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g  223 (266)
                      +.++|+.++++++.+++++++++++++|++.... ..+.. +++.|.   |+.+++....     ......+.+.|.++|
T Consensus       328 a~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~G  403 (443)
T PRK06058        328 ALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGD-VRGRGA---MIAIELVKPGTTEPDAELTKALAAAAHAAG  403 (443)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEe-eeccce---EEEEEEecCCCCCCcHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999983333 33444 899999   9999885421     112566888889999


Q ss_pred             ceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       224 i~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      |++.+.+  ++++|+.|++.+|++++++++++|++++++
T Consensus       404 v~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        404 VIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             eEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence            9998754  479999999999999999999999999875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-36  Score=269.56  Aligned_cols=256  Identities=30%  Similarity=0.471  Sum_probs=216.1

Q ss_pred             CccCCcCcccccCCCCCCceeecCC--------C--------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYN--------D--------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK   65 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~--------d--------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~   65 (266)
                      ++++++..+..|.|+.+++..++++        +        ++++++.+++.+++++|++||+++. |.++++++++++
T Consensus       175 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~-g~~~~~~~yl~~  253 (459)
T PRK06082        175 SVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNT-DVQVPSKAYWKR  253 (459)
T ss_pred             hhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCC-CCcCCCHHHHHH
Confidence            4566777777888999999888743        2        3568888865558999999999987 466689999999


Q ss_pred             HHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547          66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL  145 (266)
Q Consensus        66 l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (266)
                      |+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|++++|++|+|.+++++++.+.+......+|++++|+
T Consensus       254 lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl  333 (459)
T PRK06082        254 VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPL  333 (459)
T ss_pred             HHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHH
Confidence            99999999999999999999999999889999999999999999999985599999999988755432222279999999


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc------chHHHHHHH
Q psy6547         146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIK  218 (266)
Q Consensus       146 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~  218 (266)
                      +++++.++|+.++++++.++++++.++++++|+++... +.+.. +++.|+   ++.+++..+..      .....++..
T Consensus       334 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~ve~~~~~~~~~~~~~~~~~~~~~  409 (459)
T PRK06082        334 GCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGD-VRGIGL---LWGVELVTDRHTKERAYDEAEAVLYR  409 (459)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeee-eeeccc---eeEEEEccCccccCccHHHHHHHHHH
Confidence            99999999999998899999999999999999983332 33444 899999   99999864211      124568888


Q ss_pred             HHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         219 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       219 l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +.++|+++.+.+.+.+|++|++.+|+++++++++++++++.++.
T Consensus       410 ~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~  453 (459)
T PRK06082        410 CLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKIC  453 (459)
T ss_pred             HHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            99999999887679999999999999999999999999998763

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-36  Score=266.71  Aligned_cols=250  Identities=33%  Similarity=0.561  Sum_probs=216.6

Q ss_pred             CcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           8 TSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      .....|.|+.++++.+|+++          ++++++.+++   ..++++|++||+++++|.++++++++++|+++|++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g  232 (425)
T PRK07495        153 PYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHG  232 (425)
T ss_pred             ccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            45567888888999999875          5666887753   2479999999999998888899999999999999999


Q ss_pred             CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +++|+||+|+||+++|..|+++.+++.||++++||++++| +|+|++++++++++.+....+.+||+++|++++++.+++
T Consensus       233 ~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l  311 (425)
T PRK07495        233 ILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVL  311 (425)
T ss_pred             CEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC-ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999888888889999999999999999 999999999999998887778899999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----chHHHHHHHHHHCCceecc
Q psy6547         155 DVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-----LEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~  228 (266)
                      +.++++++.+++++++++++++|++.... +.+.. +++.|+   |+++++.+.+.     .....+.+.++++|+++.+
T Consensus       312 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  387 (425)
T PRK07495        312 DVIEEEDLCERANQLGNRLKQRLASLRETVPEIAD-IRGPGF---MNAVEFNDADSGLPSAEFANRVRLKALEKGLILLT  387 (425)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeee-eecCce---EEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEee
Confidence            99998899999999999999999983332 33444 889999   99999865211     1245688889999999976


Q ss_pred             CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         229 IS--NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+  ++.+||.|++.+|++++++++++|+++++++.
T Consensus       388 ~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        388 CGVHGNVIRFLAPITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             cCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            43  48999999999999999999999999998753

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=1.4e-36  Score=269.02  Aligned_cols=256  Identities=27%  Similarity=0.443  Sum_probs=215.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      |+++++..++.+.|..+++.+++++.                 +++|++.+.+  .+++++|++||+++.+|.+.++.++
T Consensus       162 s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~y  241 (456)
T PRK07480        162 SLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATY  241 (456)
T ss_pred             hccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHH
Confidence            44555555556667677788777542                 3667655533  2489999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--C--CCCCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--P--GTHGS  138 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~--~~~~~  138 (266)
                      +++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+.  .  ..+.+
T Consensus       242 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~  321 (456)
T PRK07480        242 WPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGF  321 (456)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCC
Confidence            9999999999999999999999999999999999999999999999999999569999999999988772  2  35889


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547         139 TYGGNPLACKLAMTALDVILEENMIENA-YKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----L--  210 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----~--  210 (266)
                      ||++||++++++.++|+.++++++.+++ +++.++++++|++ +.. +.+.. +++.|+   |+.+++.++..    .  
T Consensus       322 T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vrG~Gl---m~gie~~~~~~~~~~~~~  396 (456)
T PRK07480        322 TYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRE-LADHPLVGE-VRGVGL---VGAIELVKDKATRERFEA  396 (456)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hhcCCCeee-EEeecc---eEEEEEeccccccccCcc
Confidence            9999999999999999999999999999 6999999999998 544 33444 899999   99999854211    0  


Q ss_pred             ---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         211 ---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       211 ---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ....+...|+++||++.+. ++.+|++|++.+|++++|+++++|++++.++.+
T Consensus       397 ~~~~~~~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        397 GGGVGTICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             hhhHHHHHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               1246778899999999875 478999999999999999999999999988654

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=1e-36  Score=268.67  Aligned_cols=255  Identities=28%  Similarity=0.492  Sum_probs=219.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCC--------CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYN--------DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL   69 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l   69 (266)
                      |+++++..+..|.|..++++.+|++        |++++++++++.    +++++|++||+++++|.++++++++++|+++
T Consensus       148 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~l  227 (425)
T PRK09264        148 AVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKL  227 (425)
T ss_pred             HhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence            5566777777888888899999985        778899999642    3689999999999999988999999999999


Q ss_pred             HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      |++||+++|+||+|+|||++|..|+++.+++.||++++||++++ | +|+|++++++++ ..+....+..|+++++++++
T Consensus       228 c~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G-~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~a  305 (425)
T PRK09264        228 CRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYG-LPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFV  305 (425)
T ss_pred             HHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCc-cceEEEEEchhh-hccCCCccCCCCCCCHHHHH
Confidence            99999999999999999999998888889999999999999997 8 999999999887 45555567889999999999


Q ss_pred             HHHHHH-HHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce
Q psy6547         149 LAMTAL-DVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV  225 (266)
Q Consensus       149 a~~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  225 (266)
                      ++.+++ +.++++++.++++++.++++++|++ +..  +.+...+++.|.   ++++.+.+  ......+++.|.++||+
T Consensus       306 aa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~-l~~~~~~~~~~vrg~Gl---~~~i~l~~--~~~~~~l~~~~~~~Gv~  379 (425)
T PRK09264        306 TATAALEEYWSDDAFEKEVKAKGELVRERLEE-IAAKYPGLGAEVRGRGM---MQGIDFGD--GELAGKIAAEAFENGLI  379 (425)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhCCCceecceeccc---EEEEEecC--hHHHHHHHHHHHHCCCE
Confidence            999999 6666778999999999999999988 432  222233778899   99999976  44577899999999999


Q ss_pred             eccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         226 TKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       226 ~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +.+.+  .+.+|++|++.+|++++++++++|+++++++..+
T Consensus       380 ~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        380 IETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE  420 (425)
T ss_pred             EeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            98753  4799999999999999999999999999886543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=1.3e-36  Score=268.98  Aligned_cols=256  Identities=26%  Similarity=0.432  Sum_probs=216.0

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCH-----------------HHHHHHHhc----CCCEEEEEEccccCCCCcccCCh
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDV-----------------DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~-----------------~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      ++++++..+..|.|..+++..+++++.                 +.+++.++.    ..++++|++||+++++|.+++++
T Consensus       147 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~  226 (442)
T TIGR00709       147 AVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPS  226 (442)
T ss_pred             hhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCH
Confidence            455666666778888888888887642                 224444431    14799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY  140 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  140 (266)
                      +++++++++|++||+++|+||+++||||+|..|+++.+++.||++++||++++| +|+|+++++++ ++.+....+.+||
T Consensus       227 ~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pigav~~~~~-~~~~~~~~~~~T~  304 (442)
T TIGR00709       227 EWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQPAGHTGTF  304 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCC-cccEEEEEchH-HhccCCCcCCCCC
Confidence            999999999999999999999999999999988888899999999999999999 99999999988 4565555688999


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----------
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----------  209 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----------  209 (266)
                      ++||++++++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|+   ++.+++.+...          
T Consensus       305 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---~~~ie~~~~~~~~~~~~~~~~  380 (442)
T TIGR00709       305 RGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGN-VRGRGL---MQGIMIVDERQSKDATGAYPR  380 (442)
T ss_pred             CcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEEccCcccccccccCCc
Confidence            9999999999999999999999999999999999999983333 44555 999999   99999864210          


Q ss_pred             --chHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         210 --LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       210 --~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                        .....++..|+++|+++.+.+  ++.+|+.|++.+|+++++++++++++++.++.+
T Consensus       381 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~  438 (442)
T TIGR00709       381 DCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEALA  438 (442)
T ss_pred             chHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              124568888999999998653  689999999999999999999999999987644

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.3e-36  Score=268.63  Aligned_cols=255  Identities=30%  Similarity=0.529  Sum_probs=219.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCCh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      +|+++++..+..|.|..+++..+|++.                  ++++++++++.  +++++|++||+++++|.+.+++
T Consensus       159 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~  238 (445)
T PRK09221        159 ISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPK  238 (445)
T ss_pred             hccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCH
Confidence            356667777778888888888887753                  36888888643  4799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------  133 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------  133 (266)
                      +++++|+++|++||+++|+||+++|||++|..|.++.+++.||++++||++++|++|+|.+++++++++.+..       
T Consensus       239 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~  318 (445)
T PRK09221        239 GYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIE  318 (445)
T ss_pred             HHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccc
Confidence            9999999999999999999999999999999888889999999999999999886799999999999887642       


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc---c
Q psy6547         134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA---I  209 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~  209 (266)
                      ..+.+||+++|++++++.++|+.++.+++.++++++.+++++.|++ +.. +.+.. +++.|+   +..+.+....   .
T Consensus       319 ~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrg~Gl---~~~v~~~~~~~~~~  393 (445)
T PRK09221        319 FFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHS-LKGLPHVID-IRNIGL---VAGIELAPRPGAPG  393 (445)
T ss_pred             cccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-hccCCCEEE-EecCce---EEEEEEeccccccc
Confidence            2467899999999999999999999889999999999999999998 533 44555 889999   9888876421   1


Q ss_pred             chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..+..+++.|+++||++.+. ++.+||+|++.+|++++++++++|++++.++
T Consensus       394 ~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        394 ARGYEAFMKCFEKGLLVRYT-GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             chHHHHHHHHHHCCeEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            23567889999999999876 5799999999999999999999999999764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-36  Score=267.92  Aligned_cols=251  Identities=33%  Similarity=0.564  Sum_probs=216.4

Q ss_pred             cCcccccCCCCCCceeecCC-----------------CHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHH
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKV   66 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l   66 (266)
                      +...+.|.|+.+++..+|++                 +++++++++++   .+++++|++||+++++|.+.++++++++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l  233 (433)
T PRK08117        154 SKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKL  233 (433)
T ss_pred             ccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHH
Confidence            45556678888888888875                 45678888754   24799999999999999999999999999


Q ss_pred             HHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHH
Q psy6547          67 RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLA  146 (266)
Q Consensus        67 ~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (266)
                      +++|++||+++|+||+|+||+++|..++.+.+++.||++++||++++| +|+|++++++++++.+....+..|++++|++
T Consensus       234 ~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G-~pigav~~~~~i~~~~~~~~~~~T~~~np~~  312 (433)
T PRK08117        234 REICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPLGSHGTTFGGNPVA  312 (433)
T ss_pred             HHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-CcceeEEEcHHHHhhccCCCCCCCCCcCHHH
Confidence            999999999999999999999999887777889999999999999999 9999999999999888766788999999999


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHHH
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKMK  220 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~  220 (266)
                      ++++.++|+.++.+++.+++++++++++++|++ +..  ..+.. +++.|.   ++++++.+.+    ......+.+.|.
T Consensus       313 ~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~-l~~~~~~~~~-vrg~Gl---~~gi~~~~~~~~~~~~~~~~~~~~l~  387 (433)
T PRK08117        313 CAAALATLEVIKEEKLLDNANEMGAYALERLEV-LKEKHPVIGD-VRGIGL---MIGIEIVDPDGEPDGDAVEKILDKCL  387 (433)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHhcCCceee-eecCCc---EEEEEEecCCCCcchHHHHHHHHHHH
Confidence            999999999998888999999999999999998 542  33344 889999   9999986421    223567889999


Q ss_pred             HCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         221 DAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       221 ~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ++||++.+.+  .+++|++|++.+|++++++++++|.++++++.+
T Consensus       388 ~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        388 EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             HCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999987643  479999999999999999999999999987643

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=268.01  Aligned_cols=230  Identities=32%  Similarity=0.547  Sum_probs=200.3

Q ss_pred             HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          28 VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        28 ~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      +++++++++..  +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++||||+|..|+++.+|+.||++
T Consensus       200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~  279 (451)
T PRK06062        200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI  279 (451)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee
Confidence            67788888642  4799999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHhhcccc
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG-EIFRSELSSPAN  182 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~~~  182 (266)
                      +++|++++|++|+|.+++++++++.+...  .+.+||+++|++++++.++|+.++++++.+++++.+ +++++.|+++..
T Consensus       280 t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~  359 (451)
T PRK06062        280 TFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAE  359 (451)
T ss_pred             eechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999955999999999999887643  577899999999999999999999999999999998 689999988333


Q ss_pred             c-CCCcccEEecCccceeeEEEEeeCcc-------c-----hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHH
Q psy6547         183 K-SKASFKLSSGGLKKSINTLILSVSAI-------L-----EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE  249 (266)
Q Consensus       183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~-------~-----~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~  249 (266)
                      . +.+.. +++.|+   |+.+.+..+..       .     ....+++.|+++||++.+. .+.+|++|++.+|+++|++
T Consensus       360 ~~~~v~~-vrG~Gl---~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~  434 (451)
T PRK06062        360 RHPSVGE-VRGLGV---FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVRE  434 (451)
T ss_pred             cCCcEEe-Eecccc---EEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHH
Confidence            3 33444 899999   99999853210       0     2457889999999998875 5789999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy6547         250 GLDIIINTINTMA  262 (266)
Q Consensus       250 ~~~~l~~~~~~~~  262 (266)
                      ++++++++++++.
T Consensus       435 ~~~~l~~~l~~~~  447 (451)
T PRK06062        435 GLAILDAALAVAD  447 (451)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998753

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=2.7e-36  Score=265.11  Aligned_cols=252  Identities=55%  Similarity=0.974  Sum_probs=215.8

Q ss_pred             cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547           9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ....+.|..++++.++++|+++|++.++ .+++++|++||++|++|.+..+.+++++|+++|++||+++|+||+|+++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~  226 (400)
T PTZ00125        148 CYNNFGPFVPGFELVDYNDVEALEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR  226 (400)
T ss_pred             hhccCCCCCCCceEeCCCCHHHHHHHhC-CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            3345667777899999999999999995 347999999999999999877889999999999999999999999999998


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                      .|..+....+++.||++++||++++|++|+|++++++++.+.+....+..+++++++.++++.++|+.+.++++.+++++
T Consensus       227 ~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~  306 (400)
T PTZ00125        227 TGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQR  306 (400)
T ss_pred             cchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88766666678899999999999988459999999999998887666778899999999999999999888889999999


Q ss_pred             HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHH
Q psy6547         169 MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR  248 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~  248 (266)
                      +.++++++|++++.........++.|.   ++++.++..+..+..+++++|+++||.+.|.+.+++|+++++.+++++++
T Consensus       307 ~~~~l~~~l~~l~~~~~~~~~~~~~g~---~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~  383 (400)
T PTZ00125        307 LGEVFRDGLKELLKKSPWVKEIRGKGL---LNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLD  383 (400)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEecccE---EEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHH
Confidence            999999999883333222222567788   99988864223467789999999999999987899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy6547         249 EGLDIIINTINTMAAK  264 (266)
Q Consensus       249 ~~~~~l~~~~~~~~~~  264 (266)
                      +++++|.++++++...
T Consensus       384 ~~l~~l~~~l~~~~~~  399 (400)
T PTZ00125        384 QALEIIKKVLKSFDSN  399 (400)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999887543

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=3e-36  Score=267.08  Aligned_cols=257  Identities=25%  Similarity=0.460  Sum_probs=217.4

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCCh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      +|+++++..++.|.|..+++..+|+++                  ++.+++++++  .+++++|++||+++++|.+.+++
T Consensus       162 ~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~  241 (460)
T PRK06541        162 LAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPP  241 (460)
T ss_pred             hcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCH
Confidence            356667777777899999999888553                  3678888864  24799999999999999998899


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTH  136 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~  136 (266)
                      +++++|+++|++||+++|+||+|+|||++|..|+.+.+++.||++++||++++|++|+|++++++++++.+..    ..+
T Consensus       242 ~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~  321 (460)
T PRK06541        242 GYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLH  321 (460)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCcccc
Confidence            9999999999999999999999999999999888888999999999999999994499999999999877642    246


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547         137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI----L--  210 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~--  210 (266)
                      .+|++++|++++++.++|+.++.+++.+++++++++++++|+++...+.+.. +++.|.   |+.+++..+..    .  
T Consensus       322 ~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~-vrg~Gl---~~~ie~~~~~~~~~~~~~  397 (460)
T PRK06541        322 GYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGD-VRGDGY---FYGIELVKDKATKETFTD  397 (460)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEE-EEecce---EEEEEEecCcccccCCcc
Confidence            6799999999999999999999889999999999999999998323233444 889999   99999854210    0  


Q ss_pred             ------hHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         211 ------EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       211 ------~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                            ....+++.|+++||++.+.  +.+.+|++|++.+|++++++++++|++++.++
T Consensus       398 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        398 DESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             hhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                  1135778899999999874  45799999999999999999999999999764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=2.2e-36  Score=265.46  Aligned_cols=251  Identities=59%  Similarity=1.021  Sum_probs=216.3

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      .++++.....|.|..++++.++|+|+++|++++++. +++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DE  227 (401)
T TIGR01885       148 MSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADE  227 (401)
T ss_pred             CcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            344555555677777889999999999999999653 4789999999999999998788899999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|+|++++|..+..+..++.||++++||++++|++|+|++++++++++.+....+..+++++++.++++.++|+.++.++
T Consensus       228 v~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~  307 (401)
T TIGR01885       228 IQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEK  307 (401)
T ss_pred             hhhCCCccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999987766667889999999999996658999999999999888765667788999999999999999998878


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      +.++++++++++++.|++ ++...+.. .++.|.   |+.+.++... +.++.+++++|.++||++.+.+.+.+|++|++
T Consensus       308 l~~~~~~~~~~~~~~L~~-l~~~~~~~-~~g~g~---~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l  382 (401)
T TIGR01885       308 LAENAEKLGEIFRDQLKK-LPKPIITE-VRGRGL---LNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPL  382 (401)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccCCceeE-EeecCe---eEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCc
Confidence            889999999999999998 65433343 678888   8888876521 13578899999999999999878999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTI  258 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~  258 (266)
                      .+|++++++++++|++++
T Consensus       383 ~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       383 VITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            999999999999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=1.6e-36  Score=266.96  Aligned_cols=247  Identities=29%  Similarity=0.506  Sum_probs=215.2

Q ss_pred             CcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           8 TSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      ..+..|.|+.++++.+|+++          ++++++++++   .+++++|++||+++++|...++++++++|+++|++||
T Consensus       153 ~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g  232 (421)
T PRK09792        153 PYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHG  232 (421)
T ss_pred             ccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            45667888888888888753          5788988863   3479999999999999988789999999999999999


Q ss_pred             CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +++|+||+++||+++|..++++.+++.||++++||++++| +|+|++++++++++.+....+.+|++++|++++++.+++
T Consensus       233 ~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l  311 (421)
T PRK09792        233 IVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVL  311 (421)
T ss_pred             CEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC-CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999888888888999999999999999 999999999999998887778999999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCCceecc
Q psy6547         155 DVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~  228 (266)
                      +.++++++.++++++.+++++.|+.+... +.+.. +++.|+   ++++++.+.+     ......+++.+.++||++.+
T Consensus       312 ~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~-vrG~Gl---~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~  387 (421)
T PRK09792        312 NIIDKESLCERANQLGQRLKNTLIDAKESVPAIAA-VRGLGS---MIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLT  387 (421)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcce-ecccce---EEEEEecCCccCCcchHHHHHHHHHHHHCCcEEee
Confidence            99998889999999999999999883232 33444 889999   9999997521     13467789999999999975


Q ss_pred             CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         229 IS--NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+  ++.+|+.|++.++++++++++++|++++.
T Consensus       388 ~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        388 CGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             cCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            33  58999999999999999999999999875

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-36  Score=265.06  Aligned_cols=252  Identities=32%  Similarity=0.519  Sum_probs=214.2

Q ss_pred             ccCC-cCcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547           3 ITTD-PTSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA   68 (266)
Q Consensus         3 ~~~~-~~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~   68 (266)
                      ++++ +.....|.|+.+++..+++++          ++++++.+++   .+++++|++||+++++|..+++++++++|++
T Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~  226 (421)
T PRK06777        147 LTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRT  226 (421)
T ss_pred             hcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHH
Confidence            3443 235566788888899888875          6678888853   2479999999999999988899999999999


Q ss_pred             HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      +|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+|++++++++++.+....+..|+++++++++
T Consensus       227 lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~a  305 (421)
T PRK06777        227 LCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVA  305 (421)
T ss_pred             HHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHH
Confidence            9999999999999999999999877888889999999999999999 999999999999998887778899999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-c----chHHHHHHHHHHC
Q psy6547         149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-I----LEVYDVCIKMKDA  222 (266)
Q Consensus       149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~  222 (266)
                      ++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|.   |+.+.+.... +    .-...+.++++++
T Consensus       306 aa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~  381 (421)
T PRK06777        306 AALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD-IRARGS---MVAVEFNDPQTGKPSPEFTRQYQRQALEE  381 (421)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE-ecCceE---EEEEEEecCccCCccHHHHHHHHHHHHhC
Confidence            99999999988899999999999999999983222 33444 788999   9988775421 1    1245566777899


Q ss_pred             CceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       223 gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ||++.+++  ++++||+|++..+++++++++++|++++.
T Consensus       382 Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        382 GLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            99998864  47999999999999999999999998874

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.6e-36  Score=263.17  Aligned_cols=245  Identities=35%  Similarity=0.628  Sum_probs=213.5

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      +++++...+.|.|..++++.++|+|++++++.+  .+++++|++||+++++|.+..+++++++|+++|++||+++|+||+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv  209 (377)
T PRK02936        132 ATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM--NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEV  209 (377)
T ss_pred             ccCCccccccCCCCCCCceEeCCCCHHHHHHhc--cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            344455566688888999999999999999999  457999999999999998888999999999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      |+||++.|.++....+++.||++++||++++| +|+||+++++++.+.+....+..++++++++++++.++|+.+..+++
T Consensus       210 ~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~  288 (377)
T PRK02936        210 QTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSF  288 (377)
T ss_pred             ccCCCcCchhhHHHhhCCCCcEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            99999888766666678899999999999999 99999999999999887767778889999999999999998877788


Q ss_pred             HHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         163 IENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      .++++++.+++++.|++.+.. ..+.. .++.|.   ++++.+.+    +...+.+.|.++||++.+.+.+++|++|++.
T Consensus       289 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~---~~~i~~~~----~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~  360 (377)
T PRK02936        289 LEEVQEKGEYFLQKLQEELEHLECVKN-IRGKGL---MIGIECTE----EVAPVIEQLREEGLLVLSAGPNVIRLLPPLV  360 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEe-Eeecce---EEEEEecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcc
Confidence            999999999999999873322 23333 567788   99999876    3678999999999999998778999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTI  258 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~  258 (266)
                      ++++++++++++|++++
T Consensus       361 ~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        361 VTKEELDQAVYLLKKVL  377 (377)
T ss_pred             cCHHHHHHHHHHHHHhC
Confidence            99999999999998763

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-36  Score=266.50  Aligned_cols=249  Identities=32%  Similarity=0.544  Sum_probs=212.8

Q ss_pred             CcccccCCCCCCceeecCCC-------------H--------HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHH
Q psy6547           8 TSYNEFGPHMPGYNIIPYND-------------V--------DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d-------------~--------~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      ...+.|.|..++++.+|+++             .        +.+++.+..    .+++++|++||+++.+|.+.+++++
T Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~y  244 (457)
T PRK05639        165 SQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENF  244 (457)
T ss_pred             ccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHH
Confidence            34566888889999999874             2        245555422    3489999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG  142 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~  142 (266)
                      +++|+++|++||+++|+||+++|||++|..|+.+.+++.||+++++|++++| +|+|++++++++++. ....+..|+++
T Consensus       245 l~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~pi~av~~~~~i~~~-~~~~~~~T~~g  322 (457)
T PRK05639        245 FKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMDL-TSGSALLTPAA  322 (457)
T ss_pred             HHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC-CcceeEEehHHHHhh-cCCCcccCCCc
Confidence            9999999999999999999999999999988888899999999999999999 999999999999883 33356789999


Q ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----cchHHHHHH
Q psy6547         143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCI  217 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~  217 (266)
                      +|++++++.++|+.++++++.++.+++.++++++|+++... ..+.. +++.|+   ++.+.+..+.    ......+++
T Consensus       323 ~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~-VrG~Gl---~~gve~~~~~~~~~~~~~~~~~~  398 (457)
T PRK05639        323 NPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGD-VRGKGL---MIGVEIVKENGKPDPELTGKICW  398 (457)
T ss_pred             CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEe-ecccee---EEEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999983333 33444 899999   9999885421    123567889


Q ss_pred             HHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         218 KMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       218 ~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .|+++|+++.+.+  .+.+|++|++.+|++++++++++|+++++...
T Consensus       399 ~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~  445 (457)
T PRK05639        399 RAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL  445 (457)
T ss_pred             HHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999998754  58999999999999999999999999998764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.2e-36  Score=264.42  Aligned_cols=244  Identities=26%  Similarity=0.434  Sum_probs=210.2

Q ss_pred             cCcccccCCCCCCceeecCCC------------HHHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYND------------VDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d------------~~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      +..++.|.|..+++..+|++.            .++++++++  +++++|++||+ ++.+|.++++.+++++|+++|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~  234 (422)
T PRK05630        157 GGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH  234 (422)
T ss_pred             ccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc
Confidence            345566777777777776552            234555552  47999999996 999999999999999999999999


Q ss_pred             CCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHHH
Q psy6547          74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLAC  147 (266)
Q Consensus        74 g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  147 (266)
                      |+++|+||+++|||++|..|+++.+++.||+++++|+++||++|+|++++++++.+.+..      ..+.+||+++|+++
T Consensus       235 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~  314 (422)
T PRK05630        235 DILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC  314 (422)
T ss_pred             CCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence            999999999999999999889888999999999999999995599999999999887742      25789999999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         148 KLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       148 ~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      +++.++|+.++++++++++.++.+++++.|+. +.. +.+.. +++.|+   ++.+++.+  ..++..+.+.++++|+++
T Consensus       315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~-l~~~~~v~~-vRg~Gl---~~~ie~~~--~~~~~~~~~~~~~~Gl~~  387 (422)
T PRK05630        315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSP-LAHLPGVAD-VRVLGA---IGVVEMEQ--PVDMEEATQAAVDHGVWL  387 (422)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-hhcCCCeee-eecccc---EEEEEECC--cccHHHHHHHHHHCCeEE
Confidence            99999999999889999999999999999987 443 44555 899999   99999976  334678999999999999


Q ss_pred             ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 KPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .+.+ +.+|+.|++.+|++++++++++|+++++.
T Consensus       388 ~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        388 RPFG-RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             EecC-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            8864 89999999999999999999999999864

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=4.9e-36  Score=264.22  Aligned_cols=247  Identities=33%  Similarity=0.550  Sum_probs=212.1

Q ss_pred             CcccccCCCCCCceeecCCC----------------HHHHHHHHh--c-CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547           8 TSYNEFGPHMPGYNIIPYND----------------VDALEAKLK--S-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA   68 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d----------------~~~l~~~l~--~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~   68 (266)
                      ...+.|.|+.+++..+++++                +++++++++  . .+++++|++||+++.+|.+.++++++++|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~  225 (420)
T TIGR00700       146 PYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLD  225 (420)
T ss_pred             ccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence            35566888888888888752                567777763  1 3489999999999999999899999999999


Q ss_pred             HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      +|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+||+++++++++.+....+.+|+++++++++
T Consensus       226 lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~a  304 (420)
T TIGR00700       226 WCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACA  304 (420)
T ss_pred             HHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHH
Confidence            9999999999999999999999877888889999999999999999 999999999999988877778899999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHC
Q psy6547         149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDA  222 (266)
Q Consensus       149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~  222 (266)
                      ++.++|+.++.+++.+++++..++++++|+++... +.+.. +++.|.   ++++.+.+..     ......+.+.+.++
T Consensus       305 aa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~  380 (420)
T TIGR00700       305 AALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGD-VRGLGA---MIAVELVDPGTTEPDAGLAERIATAAHAA  380 (420)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEE-eeccce---EEEEEEecCCCCCccHHHHHHHHHHHHHC
Confidence            99999999989999999999999999999983332 23334 788899   9999884321     12356778888899


Q ss_pred             CceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       223 gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ||++.|++  ++++|++|+...+++++++++++|.++++
T Consensus       381 Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       381 GLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             CeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            99999864  48999999998999999999999999874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.5e-36  Score=264.26  Aligned_cols=254  Identities=30%  Similarity=0.481  Sum_probs=214.1

Q ss_pred             CccCCcCcccccCCCCCCceeecC--CC-----HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHh
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPY--ND-----VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQ   72 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~--~d-----~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~   72 (266)
                      |++.++.....|.|...++..+++  +|     ++++++.++++ +++++|++|| +++.+|...++.+++++|+++|++
T Consensus       153 s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~  232 (423)
T PRK05964        153 SVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR  232 (423)
T ss_pred             hcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence            445555555667776666666665  45     88899999653 4899999999 689899998999999999999999


Q ss_pred             cCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHH
Q psy6547          73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLA  146 (266)
Q Consensus        73 ~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~  146 (266)
                      ||+++|+||+|+||+++|..++++.+++.||++++||++++|++|+|++++++++++.+..      ..+.+||++++++
T Consensus       233 ~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~  312 (423)
T PRK05964        233 HGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLA  312 (423)
T ss_pred             cCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHH
Confidence            9999999999999999998888888899999999999999875799999999999887742      1467889999999


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCcc-chHHHHHHHHHHCCc
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAI-LEVYDVCIKMKDAGL  224 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi  224 (266)
                      ++++.++++.++.+++.+++.++.+++++.|++ +. .+.+.. .++.|.   ++.+.+.+... .....+.+.|.++||
T Consensus       313 ~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vrg~Gl---~~~i~l~~~~~~~~~~~l~~~l~~~Gv  387 (423)
T PRK05964        313 CAAANASLDLFEDEPVLERVAALSAGLAEGLEP-FRDLPGVAD-VRVLGA---IGAVELDRPVLERDGPALRAFALERGV  387 (423)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-hccCCCeEE-eecccE---EEEEEeccCcchhHHHHHHHHHHHCCe
Confidence            999999999998889999999999999999998 53 234444 678888   99999865211 136789999999999


Q ss_pred             eeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++.+. .+.+|++|++.+|++|||+++++++++++++
T Consensus       388 ~v~~~-~~~lR~~p~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        388 LLRPL-GNTIYLMPPYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             EEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence            99886 4799999999999999999999999998763

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=8.6e-36  Score=261.91  Aligned_cols=249  Identities=47%  Similarity=0.813  Sum_probs=215.4

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ++.+|..++.|.|+.+++..++|+|+++|++.+  .+++++|++|++++++|.+..+.+++++|+++|++||+++|+||+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i--~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv  229 (401)
T PRK00854        152 FSTDPDARGGFGPFTPGFRVVPFGDAEALEAAI--TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEI  229 (401)
T ss_pred             ccCCccccccCCCCCCCeEEeCCCCHHHHHHHh--CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence            455666667788999999999999999999999  457999999999999999977788999999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      |+|++++|..+.....++.+|++++||++++|++|+|++++++++++.+....+..+++++++.++++.++|+.++.+++
T Consensus       230 ~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~  309 (401)
T PRK00854        230 QTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGM  309 (401)
T ss_pred             hhCCCCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCH
Confidence            99998888766656678899999999999988579999999999998887666778888999999999999999887788


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      .++++++++++.+.|++ +....+.. .++.|.   ++.+.+... ..+..++++.|+++||.+.+.+.+++|+++++.+
T Consensus       310 ~~~~~~~~~~l~~~L~~-~~~~~~~~-~~g~g~---~~~i~~~~~-~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~  383 (401)
T PRK00854        310 IENAAEMGAYFLEGLRS-IRSNIVRE-VRGRGL---MLAVELEPE-AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVI  383 (401)
T ss_pred             HHHHHHHHHHHHHHHHh-hccCceEE-Eeccce---EEEEEEecC-chhHHHHHHHHHHCCeEEecCCCCEEEEeCCccc
Confidence            99999999999999998 54432333 567788   888876431 2356789999999999998876789999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTIN  259 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~  259 (266)
                      +++++++++++|++++.
T Consensus       384 t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        384 TREQVDWALEQIAKVLA  400 (401)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998764

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=9.1e-36  Score=261.42  Aligned_cols=246  Identities=39%  Similarity=0.688  Sum_probs=212.8

Q ss_pred             CCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +.+.....+.|+..++..++++|++++++++  .+++++|+++|+++++|..+++++++++|+++|++||+++|+||+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~  226 (396)
T PRK02627        149 GQPKYQEGFEPLVEGFIYVPFNDIEALKAAI--TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT  226 (396)
T ss_pred             CCccccccCCCCCCCceEeCCCCHHHHHHhc--CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc
Confidence            3343444567777888999999999999999  45799999999999998777999999999999999999999999999


Q ss_pred             CcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      +|++.|..++....++.||+++|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.++.+++.+
T Consensus       227 g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~  305 (396)
T PRK02627        227 GMGRTGKLFAYQHYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLE  305 (396)
T ss_pred             CCCccCceeeehhcCCCCCEEEEcchhhCC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHH
Confidence            998888766666778899999999999999 9999999999999888776788899999999999999999888888999


Q ss_pred             HHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547         165 NAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT  243 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t  243 (266)
                      +++++.+.++++|.+..... .+.. .++.|.   ++++.+..    +..+++++|.++||++.+.+.+++|+++++.++
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~  377 (396)
T PRK02627        306 NAAEVGEYLRAKLRELLEKYPGIKE-VRGLGL---MIGIELDR----PAAEIVKKALEKGLLINVTGDNVLRLLPPLIIS  377 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeee-eccCcE---EEEEEecC----cHHHHHHHHHHCCeEEeecCCCEEEEECCcccC
Confidence            99999999999988732222 2333 567788   99998843    578899999999999999877899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTINTM  261 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++++++++|+++++++
T Consensus       378 ~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        378 KEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998764

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=1.8e-35  Score=262.39  Aligned_cols=256  Identities=24%  Similarity=0.407  Sum_probs=210.7

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      ++++.+..+ .+.|..+++.++|++.                 ++++++.+.+ . +++++|++||+++++|.+.+++++
T Consensus       166 s~s~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~y  244 (460)
T PRK12403        166 ALGGMKFMH-EMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESY  244 (460)
T ss_pred             hcCCCcccc-ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHH
Confidence            344444333 3566777888887553                 3567666633 2 479999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCCCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTHGS  138 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~~~  138 (266)
                      +++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|++++|++|+|.+++++++++.+..    ..+.+
T Consensus       245 l~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~  324 (460)
T PRK12403        245 WPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGL  324 (460)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCC
Confidence            99999999999999999999999999999999999999999999999999994599999999998887742    24788


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547         139 TYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----L--  210 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----~--  210 (266)
                      ||+++|+++++++++|+.++++++.++++ ++.+++++.|+++... +.+.. +++.|+   ++.+++..+..    .  
T Consensus       325 T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~gie~~~~~~~~~~~~~  400 (460)
T PRK12403        325 TYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE-VQGAGL---VAALQFAEDKATRKRFAN  400 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eeecce---EEEEEEccCccccccccc
Confidence            99999999999999999999999999996 8999999999873333 33445 899999   99999854211    0  


Q ss_pred             ---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         211 ---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       211 ---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ....+.+.+.++|+++.+. .+.+|++|++..|+++++++++.+++++.++.+
T Consensus       401 ~~~~~~~~~~~~~~~Gll~~~~-~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~  455 (460)
T PRK12403        401 ENDLAWRCRTIGFEEGVIIRST-LGRMIMAPALVAGRAEIDELVDKTRIAVDRTAR  455 (460)
T ss_pred             hhHHHHHHHHHHHhCCEEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               1234567778999999875 357999999999999999999999999988754

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=261.42  Aligned_cols=258  Identities=31%  Similarity=0.499  Sum_probs=214.5

Q ss_pred             CccCCcCcccccCCCCCCceeecCC-----------------CHHHHHHHHhcC--CCEEEEEEccccCC-CCcccCChH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKSN--PNICAFMVEPIQGE-AGAVVPDDG   61 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~~--~~~~~i~~~~~~~~-~g~~~~~~~   61 (266)
                      ++++++...+.|.|+.+++..++++                 +++.+++++++.  +++++|++||++++ +|.++++++
T Consensus       142 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~  221 (447)
T PRK06917        142 SMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKG  221 (447)
T ss_pred             HhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHH
Confidence            4455565666677776666555432                 246788888653  37999999999875 568889999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCCC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTHG  137 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~~  137 (266)
                      ++++|+++|++||+++|+||+++||||+|..|+++.+++.||++++||++++|++|+|++++++++++.+..    ..+.
T Consensus       222 fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~  301 (447)
T PRK06917        222 YYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSG  301 (447)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccc
Confidence            999999999999999999999999999999988889999999999999999994499999999999887753    2467


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--------
Q psy6547         138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA--------  208 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--------  208 (266)
                      +|+++||++++++.++|+.++++++.++++++.+++++.|+++... +.+.. +++.|+   ++.+++..+.        
T Consensus       302 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~ie~~~~~~~~~~~~~  377 (447)
T PRK06917        302 HTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGD-VRGKGL---LIGVEFVADKKTKQPFSK  377 (447)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeecce---EEEEEEeccCCcCCCCcc
Confidence            8999999999999999999999999999999999999999983332 33444 899999   9999985321        


Q ss_pred             -cchHHHHHHHHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 -ILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 -~~~~~~~~~~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                       ......+++.|+++|+++.+.+       ++.+|++|++.+|++++++++++++++++++..
T Consensus       378 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~  440 (447)
T PRK06917        378 SQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ  440 (447)
T ss_pred             hhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence             0125678889999999998752       579999999999999999999999999988643

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.1e-35  Score=259.67  Aligned_cols=250  Identities=35%  Similarity=0.579  Sum_probs=212.8

Q ss_pred             cccccCCCCCCceeecCCC-----------------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547           9 SYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA   68 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~   68 (266)
                      .+..|.| .+++.++++++                 ++.+++++++   .+++++|++||+++++|.+.++++++++|++
T Consensus       154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~  232 (443)
T PRK08360        154 VRALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKK  232 (443)
T ss_pred             cccCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence            3445666 56778777754                 3456677754   2579999999999999998788999999999


Q ss_pred             HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      +|++||+++|+||+|+||+++|..++...+++.||++++||++++| +|+|++++++++++.+....+..++++++++++
T Consensus       233 l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~a  311 (443)
T PRK08360        233 ILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASA  311 (443)
T ss_pred             HHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHH
Confidence            9999999999999999999999877777789999999999999999 999999999999998877678889999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHH
Q psy6547         149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKD  221 (266)
Q Consensus       149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~  221 (266)
                      ++.++|+.++++++.++++++.+++++.|+++... +.+.. +++.|.   ++.+++.+..      ...+..+.++|.+
T Consensus       312 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrg~Gl---~~gie~~~~~~~~~~~~~~~~~~~~~l~~  387 (443)
T PRK08360        312 AALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGD-VRGIGL---MIGVDLVKDRETKERAYEEAAKVVWRAWE  387 (443)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            99999999988899999999999999999983332 34444 889999   9999886421      1235678899999


Q ss_pred             CCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         222 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       222 ~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +|+++.+...+.+|++|++.+|++++++++++++++++.+.+.
T Consensus       388 ~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~~  430 (443)
T PRK08360        388 LGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEEG  430 (443)
T ss_pred             CCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999987667999999999999999999999999999886543

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=1.5e-34  Score=256.61  Aligned_cols=257  Identities=32%  Similarity=0.575  Sum_probs=213.4

Q ss_pred             CccCC-cCcccccCCCCCCceeecCCC-----------------HHHHHHHHh---cCCCEEEEEEccccCCCCcccCCh
Q psy6547           2 LITTD-PTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLK---SNPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         2 ~~~~~-~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~---~~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      |+++. +..+..|.|+.+++..+|+++                 ++.+++.+.   ..+++++|++||+++.+|.+.++.
T Consensus       160 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~  239 (451)
T PRK06918        160 TMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSK  239 (451)
T ss_pred             hhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCH
Confidence            33443 335566888888898887763                 123454442   124799999999999999988999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY  140 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  140 (266)
                      +++++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+||+++++++++.+....+..|+
T Consensus       240 ~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~T~  318 (451)
T PRK06918        240 KFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG-VPISGVIGRKEIMDESAPGELGGTY  318 (451)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC-CccEEEEEcHHHHhccCCCCcCcCC
Confidence            999999999999999999999999999999877777888899999999999999 9999999999999988777788999


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC------ccchHH
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS------AILEVY  213 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~  213 (266)
                      ++++++++++.++|+.++++++.+++++.+++++++|+++... +.+.. +++.|.   ++.+.+..+      +.....
T Consensus       319 ~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~-vrg~G~---~~~~~~~~~~~~~~~~~~~~~  394 (451)
T PRK06918        319 AGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGD-VRGLGA---MCAFELVQDRKTKEPDKTLTA  394 (451)
T ss_pred             CcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCcee-ecccee---EEEEEEccCCCcCCCcHHHHH
Confidence            9999999999999999988899999999999999999983222 33333 778888   888877421      122356


Q ss_pred             HHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         214 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       214 ~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      .+.+.|.++||++.+++  ++++|++|++.++++++++++++|+++++++..
T Consensus       395 ~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~  446 (451)
T PRK06918        395 NICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYE  446 (451)
T ss_pred             HHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999998864  389999999999999999999999999987643

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-34  Score=255.85  Aligned_cols=248  Identities=39%  Similarity=0.617  Sum_probs=211.1

Q ss_pred             cCcccccCCCCCCceeecCCC------------------HHHHHH-HHhc---CCCEEEEEEccccCCCCcccCChHHHH
Q psy6547           7 PTSYNEFGPHMPGYNIIPYND------------------VDALEA-KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLK   64 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~-~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~   64 (266)
                      +..+..|.|..+++..+++++                  ++.+++ ++++   .+++++|++||+++++|.+.+++++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~  245 (441)
T PRK05769        166 PVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFK  245 (441)
T ss_pred             cccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHH
Confidence            445667888889999888753                  234666 4432   247999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcH
Q psy6547          65 KVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNP  144 (266)
Q Consensus        65 ~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  144 (266)
                      +|+++|++||+++|+||+++||+++|..|+++.+++.||++++||++++| +|+|++++++++++.+ ...+.+||+++|
T Consensus       246 ~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p~gav~~~~~i~~~~-~~~~~~T~~g~p  323 (441)
T PRK05769        246 ELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLP-PGSHANTFGGNP  323 (441)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC-cccEEEEEehhhhhcC-CCCCCCCCCcCH
Confidence            99999999999999999999999999888888889999999999999999 9999999999987543 346888999999


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHH
Q psy6547         145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKM  219 (266)
Q Consensus       145 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l  219 (266)
                      ++++++.++|+.+++ ++.++++++.+++++.|++.... +.+.. +++.|.   ++.+.+.+..    ......+.+.|
T Consensus       324 ~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~~~~~  398 (441)
T PRK05769        324 VAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGD-VRGLGL---MIGVELVKDRKEPDPKLRDKVLYEA  398 (441)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeee-eecceE---EEEEEeccCCccccHHHHHHHHHHH
Confidence            999999999999988 99999999999999999983322 33344 889999   9999885421    12356788899


Q ss_pred             HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         220 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       220 ~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++||++.+.+.+.+|++|++.+|+++++++++++++++.++
T Consensus       399 ~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        399 FKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             HhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999998777899999999999999999999999998764

>KOG1404|consensus

Probab=100.00  E-value=9.3e-35  Score=239.76  Aligned_cols=248  Identities=31%  Similarity=0.461  Sum_probs=215.9

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCH------------------HHHHHHHhc--CCCEEEEEEccccCCCCcccCCh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDV------------------DALEAKLKS--NPNICAFMVEPIQGEAGAVVPDD   60 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~------------------~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~   60 (266)
                      +|+++-++..+.|....+.+.+.+.+|+                  ++++..+..  ...++++++|++++.+|.+.+++
T Consensus       153 ~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~  232 (442)
T KOG1404|consen  153 LGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPP  232 (442)
T ss_pred             cccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCc
Confidence            4677888888888777778888877652                  555656533  23799999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-CCCC
Q psy6547          61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGST  139 (266)
Q Consensus        61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-~~~~  139 (266)
                      .++++..++|+++|.++|.||+++||||+|..|.++..++.||+++++|++|+| +|+|+++.++++.+.+.... +..|
T Consensus       233 GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~Pl~AVvtt~EIa~v~~~~~~~fnT  311 (442)
T KOG1404|consen  233 GYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG-FPLGAVVTTPEIADVLNQKSSHFNT  311 (442)
T ss_pred             hHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC-CcceeeecCHHHHHHHHhccccccc
Confidence            999999999999999999999999999999989999999999999999999999 99999999999999988765 9999


Q ss_pred             CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc-------cc
Q psy6547         140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA-------IL  210 (266)
Q Consensus       140 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~-------~~  210 (266)
                      |.++|++++++.++|+++++++++++..+.+.+++++|.+ +..  +.+.+ ++|.|+   |+.+++.++.       ..
T Consensus       312 yggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~-l~d~h~iIGd-VRG~GL---m~GvE~V~dk~~~~pp~~~  386 (442)
T KOG1404|consen  312 YGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAA-LKDKHPIIGD-VRGRGL---MLGVELVSDKSEPKPPATA  386 (442)
T ss_pred             cCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhhcCCceee-ccccee---EEEEEEecccCCCCCcchH
Confidence            9999999999999999999999999999999999999999 554  66777 999999   9999987632       11


Q ss_pred             hHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         211 EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       211 ~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      ....+.++++|.|+++..+  .++.+|++|++++|++|++.+++..
T Consensus       387 ~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  387 EGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             HHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence            2445788999999999654  4579999999999999997777644

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=5.5e-34  Score=248.26  Aligned_cols=239  Identities=32%  Similarity=0.589  Sum_probs=207.0

Q ss_pred             CcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547           8 TSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ...+.|.+..+.+..++++|++++++.+  .+++++|+++|+++++|.+.++.++++++.++|+++|+++|+||+|+|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g  212 (375)
T PRK04260        135 KIKDGFGDGVPHFSYAIFNDLNSVKALV--NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMG  212 (375)
T ss_pred             ccCCCCCCCCCCeEEeCCCCHHHHHHhc--CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            3345566655566667789999999998  34689999999999999998889999999999999999999999999998


Q ss_pred             CcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                      +.|..+....+++.||+++|||++++| +|+|++++++++.+.+....+..+++++++.++++.++|+.++.+++.++++
T Consensus       213 ~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~  291 (375)
T PRK04260        213 RTGKLYAFEHYGIEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL  291 (375)
T ss_pred             cccchhhhHhhCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888766666678899999999999999 9999999999999888766788899999999999999999988888899999


Q ss_pred             HHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547         168 KMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  246 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~  246 (266)
                      ++.+.+++.+.+.+... .+.. .++.|.   ++|+.+..    ++.++.++|.++||++.+.+.+.+|++++..+++++
T Consensus       292 ~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~  363 (375)
T PRK04260        292 ENGNYLQEQLQKALQDKETVTT-VRGLGY---MIGIETTA----DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEE  363 (375)
T ss_pred             HHHHHHHHHHHHHHhhCCCeeE-Eeccce---EEEEEecC----cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHH
Confidence            99999999998843332 2333 667888   99999854    577899999999999998877899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy6547         247 LREGLDIIINT  257 (266)
Q Consensus       247 i~~~~~~l~~~  257 (266)
                      +++++++|+++
T Consensus       364 i~~~l~~l~~~  374 (375)
T PRK04260        364 IEQGIAILSEV  374 (375)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=9.4e-34  Score=249.51  Aligned_cols=226  Identities=34%  Similarity=0.572  Sum_probs=199.2

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      |++++++++++. +++++|++||+ ++.+|.++++.+++++|+++|++||+++|+||+|+|+|++|..|..+.+++.||+
T Consensus       193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi  272 (427)
T TIGR00508       193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDI  272 (427)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCE
Confidence            577888888653 37999999997 8888898899999999999999999999999999999999998888889999999


Q ss_pred             eeecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Q psy6547         105 VILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  179 (266)
                      +++||+++||+++++.+++++++++.+...     .+..|+.++|++++++.++|+.++++++.++++++.+++++.|++
T Consensus       273 ~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  352 (427)
T TIGR00508       273 LCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSP  352 (427)
T ss_pred             EEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            999999999956999999999998887642     367889999999999999999998889999999999999999998


Q ss_pred             ccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         180 PANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       180 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                       +... .+.. .++.|.   ++.+.+.+  ...+..+.++|+++||++.+. .+.+|++|++.+|+++||++++++++++
T Consensus       353 -l~~~~~i~~-vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gv~~~~~-~~~l~~~ppl~~t~~~id~~~~~l~~~l  424 (427)
T TIGR00508       353 -LRKNPVVKD-VRVLGA---IGVVEMYK--PVNVEELQKKFVEQGVWIRPF-GKLIYVMPPYIITTEQLQKLTAALIEAL  424 (427)
T ss_pred             -hhcCCCEEe-Eecccc---EEEEEECC--ccCHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             5543 3443 788899   99999865  345678999999999999876 4689999999999999999999999998


Q ss_pred             HH
Q psy6547         259 NT  260 (266)
Q Consensus       259 ~~  260 (266)
                      ++
T Consensus       425 ~~  426 (427)
T TIGR00508       425 HE  426 (427)
T ss_pred             hc
Confidence            65

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=1.1e-33  Score=249.62  Aligned_cols=247  Identities=43%  Similarity=0.732  Sum_probs=210.9

Q ss_pred             cCcccccCCCCCCceeecCC-----------CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-----------d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      +.....+.+...+++.+|++           |+++|++.++++ .++++++++|+++++|.+.++++++++|+++|++||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  225 (413)
T cd00610         146 KKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHG  225 (413)
T ss_pred             ccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            33445677788899999999           899999999654 378999999999999988789999999999999999


Q ss_pred             CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc--CCCCCCCCCCCcHHHHHHHHH
Q psy6547          75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL--VPGTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~  152 (266)
                      +++|+||+|+++++.|..+..+.+++.||++++||++++| +|+|++++++++++.+  ....+..++++++++++++.+
T Consensus       226 ~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a  304 (413)
T cd00610         226 ILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALA  304 (413)
T ss_pred             CEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence            9999999999998888766777788899999999999999 9999999999999885  455677889999999999999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCce
Q psy6547         153 ALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLV  225 (266)
Q Consensus       153 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~  225 (266)
                      +++.++.+++.++++++++++++.|++ +.. .......++.|.   ++++.+.+..      ......+++.|.++||.
T Consensus       305 ~l~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~  380 (413)
T cd00610         305 VLEVLEEEGLLENAAELGEYLRERLRE-LAEKHPLVGDVRGRGL---MIGIELVKDRATKPPDKELAAKIIKAALERGLL  380 (413)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHH-HHhhCCcEEEeecCce---EEEEEEecCCCcCCcchHHHHHHHHHHHHCCeE
Confidence            999998888999999999999999998 433 122222456777   9999987621      14577899999999999


Q ss_pred             eccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         226 TKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       226 ~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +.+.+.+.+|+++++.+|++++++++++|++++
T Consensus       381 v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         381 LRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             EeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            999877899999999999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-33  Score=239.84  Aligned_cols=249  Identities=28%  Similarity=0.431  Sum_probs=213.9

Q ss_pred             cCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547           7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      |.....-......+..+||||++++++++++. +++++|++||+.++.|.+.+.++|++.|+++|++||++||+||+++|
T Consensus       166 p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG  245 (432)
T COG0001         166 PSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG  245 (432)
T ss_pred             CCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence            44444555668889999999999999999875 48999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILE-EN  161 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~-~~  161 (266)
                      | |.+...+...+|+.||+.+++|.+||| +|+|.+.+++++++.+.+   ..+..|+++||++++|+.++|+.+.. ++
T Consensus       246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~  323 (432)
T COG0001         246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEG  323 (432)
T ss_pred             c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhccc
Confidence            9 666666888899999999999999999 999999999999997764   47889999999999999999999988 45


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPIS  230 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~  230 (266)
                      ..+++.++++.|++.|++.+....++..+...|.   ++.+.+.+..           .....++...|+++||++.|+.
T Consensus       324 ~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gs---m~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~  400 (432)
T COG0001         324 VYERLDALGERLAEGLRAAAERHGIPLTVNRVGS---MFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQ  400 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecc---eEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcc
Confidence            8999999999999999996666777776778888   8888877621           1123456678999999999975


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      -+..=+|  ..+++++|++.+++++++++++.
T Consensus       401 ~ea~flS--~ahte~di~~~~~a~~~~~~~~~  430 (432)
T COG0001         401 FEAGFLS--TAHTEEDIDRTLEAADEAFKELA  430 (432)
T ss_pred             ccceeee--cccCHHHHHHHHHHHHHHHHHhh
Confidence            4433334  77999999999999999988764

>KOG1401|consensus

Probab=100.00  E-value=4.3e-34  Score=237.36  Aligned_cols=252  Identities=33%  Similarity=0.521  Sum_probs=211.3

Q ss_pred             CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      |+.++|+...-+|.|..++|+..+|||..+++++++.+. +++++++||+++.+|..+++++++..|+++|+++|+++|+
T Consensus       166 ls~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~  245 (433)
T KOG1401|consen  166 LSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIF  245 (433)
T ss_pred             HHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEe
Confidence            355688888889999999999999999999999998765 7999999999999999999999999999999999999999


Q ss_pred             eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC---CCCCCCcHHHHHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---GSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~  156 (266)
                      ||+++||+|.|..++.+.+++.||+.+++|.++|| +|+|++++++++++.+.+..+   ++||++||+++.++..+|+.
T Consensus       246 DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~  324 (433)
T KOG1401|consen  246 DEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDE  324 (433)
T ss_pred             ehhhhCccccchHHHHHHhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999 999999999999999987654   99999999999999999999


Q ss_pred             HhhccHHHHHHHHHHHHHHHhhcccccC--CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----
Q psy6547         157 ILEENMIENAYKMGEIFRSELSSPANKS--KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----  230 (266)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----  230 (266)
                      +.+++.++++.+..+.+++++.+.+...  .+.. ..+.|+   ++.+....    ...++.+...+.+.++....    
T Consensus       325 l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g-~~grgl---~ig~~~~~----p~~~~~d~~~~~~ll~~~~~~~~~  396 (433)
T KOG1401|consen  325 LKDPETLKNVSKIGKELRKLLDEYLKKTPNSICG-GVGRGL---VIGFEFEG----PVYKFADAAREQGLLILTLGKGLL  396 (433)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHhccCCCceee-eeeeEE---EEEEEEee----chhhhhhhhhhhhHHHHHHhcccc
Confidence            9999999999999999999999855442  2222 256677   77777654    23334444444444433322    


Q ss_pred             CCEEEEec----cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 NNIIRLSP----ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ~~~iR~~~----~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ...+|+.|    ...+++|.++++++.+.+++.++
T Consensus       397 ~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  397 EEGVRIAPIYLLTVEHTPEVIQRLLTILEKVLSAL  431 (433)
T ss_pred             cceEEEeccccccccCcHHHHHHHHHHHHHHHHHh
Confidence            23466666    23456899999999999888764

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=268.28  Aligned_cols=228  Identities=25%  Similarity=0.460  Sum_probs=200.1

Q ss_pred             HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547          29 DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD  103 (266)
Q Consensus        29 ~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d  103 (266)
                      +++++.++.    .+++++|++||+++++|.+.++++++++++++|++||+++|+||+++||||+|. .|+++.+|+.||
T Consensus       769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD  848 (1013)
T PRK06148        769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD  848 (1013)
T ss_pred             HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc
Confidence            456666642    247999999999999999999999999999999999999999999999999996 788999999999


Q ss_pred             eeeecccccCCchhhhhheecHHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547         104 IVILGKALSGGLYPISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN  182 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~  182 (266)
                      +++++|++++| +|+|.+++++++++.+... .+.+||++||++++++.++|+.++++++.+++++++++++++|++...
T Consensus       849 ivt~gK~lggG-~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~  927 (1013)
T PRK06148        849 IVTMGKPIGNG-HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQD  927 (1013)
T ss_pred             eeeecccccCC-cceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 9999999999999888654 378999999999999999999999999999999999999999998333


Q ss_pred             c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHH
Q psy6547         183 K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDI  253 (266)
Q Consensus       183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~  253 (266)
                      . ..+.. +++.|+   |+.+++..+.      ......+++.|+++||++.+.+  .+.+||.|++.+|++++|+++++
T Consensus       928 ~~~~i~~-VrG~Gl---~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~ 1003 (1013)
T PRK06148        928 RFDIIGD-VRGMGL---FLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEV 1003 (1013)
T ss_pred             hCCCceE-Eeeece---EEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHH
Confidence            3 34444 999999   9999986421      1125678899999999998754  48999999999999999999999


Q ss_pred             HHHHHHHH
Q psy6547         254 IINTINTM  261 (266)
Q Consensus       254 l~~~~~~~  261 (266)
                      |++++++.
T Consensus      1004 l~~~l~~~ 1011 (1013)
T PRK06148       1004 LDDVLAAA 1011 (1013)
T ss_pred             HHHHHHHH
Confidence            99999874

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=1.9e-33  Score=247.70  Aligned_cols=219  Identities=26%  Similarity=0.353  Sum_probs=187.0

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC--cC
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PD  103 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~--~d  103 (266)
                      ++++++++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++||+++|..|+++.+|+.  ||
T Consensus       237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD  316 (464)
T TIGR00699       237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD  316 (464)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence            356788888653 479999999999999999999999999999999999999999999999999998899999987  99


Q ss_pred             eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547         104 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN  182 (266)
Q Consensus       104 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~  182 (266)
                      ++++||+++ +| +.    +.. +.+.......+.+|++++|++++++.++|+.++++++.+++++..++++++|++ +.
T Consensus       317 i~t~gK~lg~gG-~~----~~~-~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~-l~  389 (464)
T TIGR00699       317 MVTFSKKFQTAG-YF----FHD-PAFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLED-LQ  389 (464)
T ss_pred             EEEehhhhccCC-cc----ccc-hhccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HH
Confidence            999999996 67 42    222 222222234688999999999999999999999999999999999999999998 54


Q ss_pred             --cC-CCcccEE--ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         183 --KS-KASFKLS--SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       183 --~~-~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                        .+ .+.. ++  +.|+   |+.+++++  ...+..+.+.++++|+++.+.+.+.+||+|++.+|++++++++++|+++
T Consensus       390 ~~~~~~i~~-vRg~G~Gl---m~gie~~~--~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~  463 (464)
T TIGR00699       390 KKYPEFIQN-LRGKGRGT---FIAWDTPD--EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKI  463 (464)
T ss_pred             HhCCCceee-ecccCeEE---EEEEecCC--HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence              23 3444 77  8899   99999865  3346789999999999999876789999999999999999999999876


Q ss_pred             H
Q psy6547         258 I  258 (266)
Q Consensus       258 ~  258 (266)
                      +
T Consensus       464 ~  464 (464)
T TIGR00699       464 I  464 (464)
T ss_pred             C
Confidence            3

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.8e-33  Score=246.06  Aligned_cols=238  Identities=25%  Similarity=0.376  Sum_probs=198.7

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      +..+++..+++||++++++.++++ .++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| |++..+
T Consensus       174 ~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~  252 (428)
T PRK12389        174 SIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGG  252 (428)
T ss_pred             cccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcch
Confidence            445789999999999999999654 379999999999999999999999999999999999999999999999 887766


Q ss_pred             ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                      +.+.+++.||+++++|++++| +|+|.+++++++++.+..   ..+.+||++||+++++++++|+.++++++.++++++.
T Consensus       253 a~~~~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g  331 (428)
T PRK12389        253 AQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLG  331 (428)
T ss_pred             hhHHhCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            777789999999999999999 999999999999988753   3578899999999999999999999889999999999


Q ss_pred             HHHHHHhhcccccCCCcccE-EecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547         171 EIFRSELSSPANKSKASFKL-SSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSP  238 (266)
Q Consensus       171 ~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~  238 (266)
                      +++++.|+++.....+.... ++.|    ++.+.+....           ......+.+.|.++||++.+.+.+.+  .|
T Consensus       332 ~~l~~~L~~l~~~~~~~~~v~r~~g----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~~  405 (428)
T PRK12389        332 AMLEEGILEAAEKHGITITINRLKG----ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAW--FL  405 (428)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCc----EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCe--ee
Confidence            99999999832322222224 3344    4566664311           01245788899999999988644443  46


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++.+|+++++++++++++++++
T Consensus       406 ~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        406 TTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHh
Confidence            7999999999999999999865

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.5e-33  Score=259.88  Aligned_cols=225  Identities=26%  Similarity=0.421  Sum_probs=189.6

Q ss_pred             HHHHHHHhc------CCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC
Q psy6547          29 DALEAKLKS------NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR  101 (266)
Q Consensus        29 ~~l~~~l~~------~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~  101 (266)
                      +.+++.|++      .+++++|++||+ ++.+|+++++++++++++++|++||+++|+||+++||||+|..|+.+.+|+.
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~  646 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK  646 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence            557777753      347999999995 8999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH----HHHHH
Q psy6547         102 PDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENA----YKMGE  171 (266)
Q Consensus       102 ~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~----~~~~~  171 (266)
                      ||+++++|+++||++|+|.+++++++++.+..      ..|++||++||++++++.++|+.++++++.+++    .++.+
T Consensus       647 PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~  726 (817)
T PLN02974        647 PDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRE  726 (817)
T ss_pred             CCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999999999997799999999999988752      258899999999999999999999987555554    44555


Q ss_pred             HHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc------chHHHHHHHHH-HCCceeccCCCCEEEEeccCCCC
Q psy6547         172 IFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNIT  243 (266)
Q Consensus       172 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t  243 (266)
                      ++.+.|.+.+.. +.+.. +++.|+   |+.+++.++..      .-+..+++.++ ++|+++++. ++.+++.++..++
T Consensus       727 ~l~~~l~~~l~~~p~V~~-VRg~Gl---~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-Gnvi~l~pP~~i~  801 (817)
T PLN02974        727 LWDEELVRAISSLPNVER-VVSLGT---VLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-GNVVYLMCGPTTS  801 (817)
T ss_pred             HHHHHHHHHHhhCCCeeE-EEeeee---EEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-CCEEEEeCCCCCC
Confidence            555566321333 45666 999999   99999975321      12457888888 999999997 4799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTI  258 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~  258 (266)
                      +++++++++.|.+.+
T Consensus       802 ~e~l~~~~~~l~~~~  816 (817)
T PLN02974        802 PETCTRLLRKVYRRL  816 (817)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998875

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=5.2e-33  Score=242.61  Aligned_cols=234  Identities=38%  Similarity=0.688  Sum_probs=200.6

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      .+.|...++..++++|++++++.+.  +++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|++|++.|.
T Consensus       144 ~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~  221 (379)
T TIGR00707       144 GFEPLVPGFSYAPYNDIESLKKAID--DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK  221 (379)
T ss_pred             cCCCCCCCceeeCCCCHHHHHHHhh--hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch
Confidence            4566777888899999999999993  46899999999888887778999999999999999999999999998877765


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+.....++.+|++++||++++| +|+||+++++++++.+.......+++.++++++++.++|+.++.+++.++++++++
T Consensus       222 ~~~~~~~~~~~d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00707       222 FFAYEHYGIEPDIITLAKGLGGG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGD  300 (379)
T ss_pred             hhhHHhcCCCCCEEEEcccccCC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44445567789999999999999 99999999999998888766777888999999999999998877778999999999


Q ss_pred             HHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHH
Q psy6547         172 IFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG  250 (266)
Q Consensus       172 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~  250 (266)
                      +++++|++ +.. ..+.. .++.|.   ++++.+++    ++.+++++|.++||.+.|.+.+++|++++..+++++++++
T Consensus       301 ~~~~~l~~-~~~~~~~~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~  371 (379)
T TIGR00707       301 YFKERLEE-LGKNYPNKE-VRGKGL---MLGIELEA----PCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEA  371 (379)
T ss_pred             HHHHHHHH-HHhhCCCCc-cccCce---EEEEEecC----cHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHH
Confidence            99999987 432 22222 445677   89998866    4678999999999999998778999999998999999999


Q ss_pred             HHHHHHH
Q psy6547         251 LDIIINT  257 (266)
Q Consensus       251 ~~~l~~~  257 (266)
                      +++|+++
T Consensus       372 ~~~l~~~  378 (379)
T TIGR00707       372 VSALEEA  378 (379)
T ss_pred             HHHHHHh
Confidence            9999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.3e-32  Score=241.87  Aligned_cols=241  Identities=23%  Similarity=0.357  Sum_probs=200.7

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      .+....+..++|||++++++.+++. +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| |+|..
T Consensus       174 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~  252 (433)
T PRK00615        174 DLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG  252 (433)
T ss_pred             CCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh
Confidence            3445566788999999999999653 479999999999999999999999999999999999999999999999 88887


Q ss_pred             cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      ++.+.+++.||++++||++++| +|+|++++++++++.+..   ..+.+|++++|+++++++++|+.++++++.++++++
T Consensus       253 ga~~~~gv~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~  331 (433)
T PRK00615        253 GAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTL  331 (433)
T ss_pred             HHHHhcCCCCCeEEEcccccCC-cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            7888889999999999999999 899999999999988753   246789999999999999999999988899999999


Q ss_pred             HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547         170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSP  238 (266)
Q Consensus       170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~  238 (266)
                      .+++.++|++++....++......|.   ++.+.+.+..           ......+.++|.++||++.+......  .+
T Consensus       332 g~~l~~~l~~~~~~~g~~v~~~r~G~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~l  406 (433)
T PRK00615        332 EQNFLSPIEEMIRSQGFPVSLVRYGS---MFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS--FL  406 (433)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEeece---EEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc--ce
Confidence            99999999884443332221223788   9999986521           01244789999999999987633221  34


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +..+|++|||++++.+++++++.
T Consensus       407 s~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        407 SSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999875

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=8.1e-33  Score=245.02  Aligned_cols=235  Identities=23%  Similarity=0.347  Sum_probs=195.5

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .+++.++|||+++++++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| +.|..++.+
T Consensus       223 ~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~  301 (474)
T PLN02482        223 SATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQE  301 (474)
T ss_pred             CCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhH
Confidence            467889999999999999754 379999999999999999889999999999999999999999999999 888877888


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      .+|+.||+++++|+++|| +|+|.+++++++++.+..   ..+.+||+++|++++++.++|+.++++++.+++.++.+++
T Consensus       302 ~~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l  380 (474)
T PLN02482        302 YFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKL  380 (474)
T ss_pred             HhCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            899999999999999999 999999999999988753   3577899999999999999999998889999999999999


Q ss_pred             HHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         174 RSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       174 ~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      +++|++ +.. ...+......+.   ++.+.+....           ......+.+.|+++||++.+.+... + .+++.
T Consensus       381 ~~~L~~-l~~~~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~-~-~psl~  454 (474)
T PLN02482        381 IQGILE-AGKKAGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA-G-FTSLA  454 (474)
T ss_pred             HHHHHH-HHHhcCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC-C-cCCCC
Confidence            999998 433 223321122233   5666554310           1124568889999999998753321 1 37899


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINT  260 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|++|||++++++++++.+
T Consensus       455 ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        455 HTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999865

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=7.3e-33  Score=244.81  Aligned_cols=236  Identities=28%  Similarity=0.425  Sum_probs=197.4

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      +.++.++++|+++++++++++ +++++|++||+++++|.+..+++++++|+++|++||+++|+||+|+|| ++|..+...
T Consensus       172 ~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~  250 (423)
T TIGR00713       172 KLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQE  250 (423)
T ss_pred             cceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHH
Confidence            457889999999999999653 478999999999999988667899999999999999999999999999 777666666


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      .+++.||+++|||++++| +|+||+++++++++.+..   ..+.+|+++++++++++.++|+.++++++.+++++..+++
T Consensus       251 ~~~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~  329 (423)
T TIGR00713       251 YFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRL  329 (423)
T ss_pred             HhCCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            778999999999999999 999999999999988863   3467899999999999999999998888999999999999


Q ss_pred             HHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      ++.|.+.+....+...+++.|.   ++.+.+....           ......+++.|.++||++.+.+.+.+|++++  +
T Consensus       330 ~~~l~~~~~~~~~~~~v~~~g~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~  404 (423)
T TIGR00713       330 AEGLSEVLEDTGIPHTVNRVGS---MFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--H  404 (423)
T ss_pred             HHHHHHHHHhcCCCeEEEeecc---EEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--C
Confidence            9988874443333333677888   8888775311           0123468889999999998765577899865  7


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINT  260 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~  260 (266)
                      |++++++++++|++++++
T Consensus       405 t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       405 TEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999998865

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=4.7e-33  Score=245.82  Aligned_cols=225  Identities=29%  Similarity=0.476  Sum_probs=190.0

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      ++++++++++++ +++++|++||+++++|.++++++++++|+++|++||+++|+||+++|||++|..|+++.+++.||++
T Consensus       211 ~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv  290 (443)
T PRK08297        211 ALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIV  290 (443)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEE
Confidence            456777888654 4899999999999999999999999999999999999999999999999999988988899999999


Q ss_pred             eecccccCCchhhhhheecHHhhhc----cC-CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGT----LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      +++|+++     +|.++...++.+.    +. ...+.+|+++||++++++.++|+.++++++.++++++.++++++|+++
T Consensus       291 ~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  365 (443)
T PRK08297        291 AFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEEL  365 (443)
T ss_pred             Eeccccc-----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999985     2223344433221    11 235889999999999999999999999999999999999999999983


Q ss_pred             ccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         181 ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       181 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ... +.+...+++.|.   ++.+.+.+  ......+++.|.++||++.+.+.+.+|++|++.+|++++++++++|++++.
T Consensus       366 ~~~~~~~~~~vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~  440 (443)
T PRK08297        366 AAEFPAVVSNVRGRGL---MCAFDLPT--TADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP  440 (443)
T ss_pred             HHHCCCcceeeeccce---EEEEEecC--HHHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            332 334323889999   99999965  334678999999999999988778999999999999999999999999987


Q ss_pred             HH
Q psy6547         260 TM  261 (266)
Q Consensus       260 ~~  261 (266)
                      ++
T Consensus       441 ~~  442 (443)
T PRK08297        441 EV  442 (443)
T ss_pred             hh
Confidence            64

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=3e-32  Score=240.60  Aligned_cols=248  Identities=30%  Similarity=0.549  Sum_probs=208.6

Q ss_pred             cccccCCCCCCceeecCC----C------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           9 SYNEFGPHMPGYNIIPYN----D------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~----d------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      ....|.+...++..++++    +      +++|++++++   .+++++|++||+++++|.+.++++++++|+++|++||+
T Consensus       155 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~  234 (425)
T PRK08088        155 YSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGI  234 (425)
T ss_pred             cccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            345566666666655533    1      5678888852   24799999999999999999999999999999999999


Q ss_pred             EEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          76 LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      ++|+||+|+++++.|..++++..++.||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+
T Consensus       235 ~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~  313 (425)
T PRK08088        235 MLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLK  313 (425)
T ss_pred             EEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            999999999998888776776778999999999999999 9999999999999998887888999999999999999999


Q ss_pred             HHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCceecc
Q psy6547         156 VILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      .++.+++.+++++..+++++.+.+.... +.+.. +++.|.   ++|+.+.+.      +.....++++.|.++||.+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-v~g~G~---~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~  389 (425)
T PRK08088        314 VFEQENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRGLGA---MIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLS  389 (425)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eeccce---EEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEec
Confidence            9988889999999999999999883333 23333 777899   999998531      123477899999999998876


Q ss_pred             CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         229 IS--NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+  .+.+|++++..+++++|++++++|.+++..+
T Consensus       390 ~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        390 CGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             CCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            53  4899999999999999999999999998753

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=262.68  Aligned_cols=227  Identities=29%  Similarity=0.525  Sum_probs=197.0

Q ss_pred             HHHHHHHh----cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547          29 DALEAKLK----SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD  103 (266)
Q Consensus        29 ~~l~~~l~----~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d  103 (266)
                      +++++.++    ..+++++|++||+++++|.+.++++++++++++|++||+++|+||+++|||++|. .|.++.+|+.||
T Consensus       729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD  808 (972)
T PRK06149        729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD  808 (972)
T ss_pred             HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC
Confidence            45555443    2347999999999999999999999999999999999999999999999999997 568888999999


Q ss_pred             eeeecccccCCchhhhhheecHHhhhccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547         104 IVILGKALSGGLYPISAVLADDEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN  182 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~  182 (266)
                      ++++||++++| +|+|++++++++++.+.. ..+.+|+++||++++++.++|+.++++++++++++++++++++|++...
T Consensus       809 ivt~gK~lg~G-~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~  887 (972)
T PRK06149        809 IITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALAD  887 (972)
T ss_pred             EEEecccccCC-eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999988864 3456778999999999999999999999999999999999999998333


Q ss_pred             c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceeccCCC--CEEEEeccCCCCHHHHHHHHHH
Q psy6547         183 K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDI  253 (266)
Q Consensus       183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~~--~~iR~~~~~~~t~~~i~~~~~~  253 (266)
                      . +.+.. ++|.|+   |+.+++....      ......+++.|+++||++.+.+.  +.+||.|++.+|++++++++++
T Consensus       888 ~~~~i~~-vrG~Gl---~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~  963 (972)
T PRK06149        888 RHPLIGA-VHGMGL---YLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDM  963 (972)
T ss_pred             hCCCeEE-Eeecce---EEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHH
Confidence            2 44555 899999   9999985311      12356789999999999998653  7999999999999999999999


Q ss_pred             HHHHHHH
Q psy6547         254 IINTINT  260 (266)
Q Consensus       254 l~~~~~~  260 (266)
                      |++++.+
T Consensus       964 l~~~l~~  970 (972)
T PRK06149        964 LDRVLTE  970 (972)
T ss_pred             HHHHHHh
Confidence            9999865

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=5.7e-32  Score=239.22  Aligned_cols=236  Identities=19%  Similarity=0.341  Sum_probs=197.5

Q ss_pred             CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      ..++..++|||++++++.+.. +++++|++||+++++|.+.++++++++++++|++||+++|+||+++ | +.|......
T Consensus       196 ~~~~~~~~~nd~~~l~~~l~~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~  272 (453)
T PRK07046        196 TATTRVVEFNDLAALEAALAD-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPGGYTR  272 (453)
T ss_pred             cCceEeeCCCCHHHHHHHhCC-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCcchhH
Confidence            456788999999999999943 4799999999999999999999999999999999999999999998 4 344333455


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---------CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---------GTHGSTYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                      .+++.||+++++|+++|| +|+|++++++++++.+..         ..+.+||++||++++++.++|+.++++++.+++.
T Consensus       273 ~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~  351 (453)
T PRK07046        273 AHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHML  351 (453)
T ss_pred             HhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHH
Confidence            679999999999999999 999999999999987752         1367899999999999999999998888999999


Q ss_pred             HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------------cchHHHHHHHHHHCCceeccCCCCEEE
Q psy6547         168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------------ILEVYDVCIKMKDAGLVTKPISNNIIR  235 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~iR  235 (266)
                      +..++++++|++......+...+.+.|.   ++.+.+....            ..-...+...|+++||++.+. .+.++
T Consensus       352 ~~g~~l~~~L~~l~~~~~~~~~v~g~G~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~~~  427 (453)
T PRK07046        352 ALAARLAAGLRAVIARHGLPWHVTRVGA---RVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-HNMML  427 (453)
T ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEEeCc---EEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-cCcEE
Confidence            9999999999984444444444888999   8888764311            011345778889999999885 46788


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         236 LSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++++  +|++||++++++++++++++.
T Consensus       428 ~~p~--~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        428 VCPA--TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             EeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence            8864  899999999999999998764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=7.9e-32  Score=237.79  Aligned_cols=237  Identities=27%  Similarity=0.432  Sum_probs=200.5

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .++..++|+|++++++.+++. .++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|+ ++|..+..+
T Consensus       174 ~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~  252 (426)
T PRK00062        174 KHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQG  252 (426)
T ss_pred             cceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHH
Confidence            356788999999999999653 379999999999999999888999999999999999999999999999 777666667


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      .+++.||++++||++++| +|+|++++++++++.+..   ..+.+|++++++.++++.++|+.++.+++.+++++..+++
T Consensus       253 ~~~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~  331 (426)
T PRK00062        253 YYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRL  331 (426)
T ss_pred             HhCCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            788899999999999999 999999999999988852   2456788999999999999999998888999999999999


Q ss_pred             HHHhhcccccCCCcccEEecCccceeeEEEEeeCcc-----------chHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI-----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      +++|++......+....++.|.   |+.+.+.+...           ..+..+++.|.++||++.+.+.+.++++  +.+
T Consensus       332 ~~~l~~~~~~~~~~~~vrg~G~---~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~--~~~  406 (426)
T PRK00062        332 AEGLKEAAKKAGIPLTVNRVGS---MFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVS--AAH  406 (426)
T ss_pred             HHHHHHHHHHcCCceEEEEecc---eEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeee--ccC
Confidence            9999873322233333778999   99998864210           1246799999999999998766677775  789


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINTM  261 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~  261 (266)
                      |++++++++++|+++++++
T Consensus       407 t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        407 TDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=2.8e-31  Score=234.23  Aligned_cols=219  Identities=30%  Similarity=0.462  Sum_probs=182.3

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      +++++++.++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|||++|..|+++.+++.||++
T Consensus       204 ~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~  283 (431)
T TIGR03251       204 ALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIV  283 (431)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEE
Confidence            456677777553 4899999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             eecccccCCchhhhhheecHHh---hhc-cC-CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547         106 ILGKALSGGLYPISAVLADDEV---MGT-LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      +++|++.     ++.++..+++   ... +. ...+.+||+++|++++++.++|+.++++++.++++++.++++++|+++
T Consensus       284 ~~gK~~~-----~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  358 (431)
T TIGR03251       284 AFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHEL  358 (431)
T ss_pred             EecccCc-----cceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999973     2223333332   221 11 224788999999999999999999998899999999999999999883


Q ss_pred             ccc-C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         181 ANK-S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       181 ~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      ... . .+.. +++.|.   ++.+.++.  ......+++.|+++||++.+.+.+.+|++|++.+|++++++++++|++
T Consensus       359 ~~~~~~~i~~-vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       359 AAEFPHLVSN-PRGRGL---MCAFDLPS--TADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             HHhCccceec-ccccce---eEEEEeCC--HHHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            232 3 3333 778899   99999865  334667999999999999987678999999999999999999999976

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.98  E-value=1e-31  Score=230.14  Aligned_cols=198  Identities=43%  Similarity=0.758  Sum_probs=176.7

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHH----------HHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDA----------LEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL   69 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~----------l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l   69 (266)
                      ++++++..+..+.|...+++.+|++++..          +++.+.+  .+++++|++||+++.+|.+.++++++++|+++
T Consensus       127 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~l  206 (339)
T PF00202_consen  127 SLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELREL  206 (339)
T ss_dssp             HHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHH
T ss_pred             cccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccc
Confidence            45678888899999999999999999877          4443322  44899999999999999999999999999999


Q ss_pred             HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547          70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL  149 (266)
Q Consensus        70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  149 (266)
                      |++||+++|+||+++||||+|..|+++.+++.||+++++|++++| +|+|.+++++++++.+....+.+|+.++|+++++
T Consensus       207 c~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aa  285 (339)
T PF00202_consen  207 CREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAA  285 (339)
T ss_dssp             HHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHH
T ss_pred             ccccccceecccccccccccCCccceecccccCcccccccchhhh-hhcccccccchhhccccccccccccccchHhhhh
Confidence            999999999999999999999999999999999999999999999 9999999999999999888899999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEe
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILS  205 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~  205 (266)
                      +.++|+.++++++.+++.+..++++++|++ +..  +.+.. +++.|.   ++.+++.
T Consensus       286 a~~~l~~~~~~~~~~~~~~~g~~l~~~L~~-l~~~~~~i~~-vrg~Gl---~~~ie~~  338 (339)
T PF00202_consen  286 ALATLEILEEEDLLERVRELGERLREGLRE-LAARYPLIGE-VRGIGL---MIGIELV  338 (339)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHTTTEEE-EEEETT---EEEEEES
T ss_pred             hhhHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHhCCCeEE-EeeeCe---EEEEEEE
Confidence            999999999999999999999999999998 554  44444 999999   9999874

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.96  E-value=1.6e-27  Score=210.44  Aligned_cols=228  Identities=23%  Similarity=0.339  Sum_probs=179.9

Q ss_pred             CceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          19 GYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      .+..++|+|+++|++++++++ ++++|++||++++    .++.+++++|+++|++||+++|+||+++||++.+. .....
T Consensus       165 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~-g~~~~  239 (431)
T PRK06209        165 LTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR-GAQKL  239 (431)
T ss_pred             cccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc-hhhHH
Confidence            467789999999999996543 7999999999865    47889999999999999999999999999865432 23334


Q ss_pred             CCCCcCeeeecccccCCchhhhhheecHHhhhc--cC------CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGT--LV------PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      +++.||++++||++++| +|+|++++++++++.  +.      ...+.++++++|++++++.++|+.++++++.+++.++
T Consensus       240 ~gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~  318 (431)
T PRK06209        240 YGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQ  318 (431)
T ss_pred             hCCCcceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            78999999999999999 899999999998876  31      1136789999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----c--chHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547         170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----I--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT  243 (266)
Q Consensus       170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t  243 (266)
                      .+++++.|++......+...+++.|.   ++.+.+...+    .  .-...+.++|.++|+++.+     ++++  ..+|
T Consensus       319 g~~l~~~L~~~~~~~~~~~~vr~~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht  388 (431)
T PRK06209        319 GAKLAAGVNEAAAEHGLQDHVRVSGR---PCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHG  388 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEeecc---eEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCC
Confidence            99999999873332333332566676   5554443100    1  1133678889999998733     3444  7889


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy6547         244 EQELREGLDIIINTINTMA  262 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~~~  262 (266)
                      +++|++++++++++++++.
T Consensus       389 ~~dId~~l~~l~~~l~~~~  407 (431)
T PRK06209        389 DADIERTIDAVHGALGVYR  407 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998863

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=6.7e-28  Score=209.71  Aligned_cols=243  Identities=21%  Similarity=0.237  Sum_probs=188.0

Q ss_pred             CCcCcccccCCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      .||.........+.+++.++-        .|+++|++.+  .+++++++++.++||+|.+ ++++.+++|+++|++||++
T Consensus       122 ~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i--~~ktk~i~ln~P~NPTGav-~~~~~l~~i~~~a~~~~i~  198 (393)
T COG0436         122 GYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI--TPKTKAIILNSPNNPTGAV-YSKEELKAIVELAREHDII  198 (393)
T ss_pred             CCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc--CccceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeE
Confidence            444444555667778888772        2699999999  5589999999999999988 9999999999999999999


Q ss_pred             EEEeccccCcCCcCc-ccc-cccC---CCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547          77 FIADEVQTGLGRTGK-LLA-IHYE---DVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKL  149 (266)
Q Consensus        77 li~De~~~~~~~~g~-~~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a  149 (266)
                      ||+||+|.++...|. +.+ .+..   .....+.+|||.++ +| ||+||++++ +++.+.+.......+++++.+.|.+
T Consensus       199 ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~a  277 (393)
T COG0436         199 IISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYA  277 (393)
T ss_pred             EEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHHHHHHhcccCCCHHHHHH
Confidence            999999998866663 222 2222   23455666999999 89 999999998 7788777766677888899999999


Q ss_pred             HHHHHHHHhh----ccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CC
Q psy6547         150 AMTALDVILE----ENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AG  223 (266)
Q Consensus       150 ~~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g  223 (266)
                      +.++|+.-..    +...+.++++++.+.+.|.+ ++ .....  .+..++   ++|..++.  ..+..+|+.+|++ .|
T Consensus       278 a~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~--~p~Ga~---Y~~~~i~~--~~d~~~f~~~Ll~~~g  349 (393)
T COG0436         278 AIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVK--PPEGAF---YLFPKIPE--LLDSEEFAKKLLEEAG  349 (393)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeecc--CCCeeE---EEEeecCC--CCCHHHHHHHHHHhCC
Confidence            9999985421    33456788899999999987 44 22221  123455   67777776  4688999999885 58


Q ss_pred             ceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       224 i~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |.+.|+       +.+++|++  +..++++++++++++.+++...
T Consensus       350 V~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         350 VAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLAEY  392 (393)
T ss_pred             EEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHHhc
Confidence            999985       34799999  6677899999999999988753

>PLN02822 serine palmitoyltransferase

Probab=99.94  E-value=1.6e-25  Score=199.96  Aligned_cols=235  Identities=18%  Similarity=0.212  Sum_probs=180.7

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcC-------CCE-EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc--
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSN-------PNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT--   84 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~-------~~~-~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~--   84 (266)
                      ..+.+++.++|||.++++..+++.       +++ ++|++|++++++|.+.    ++++|+++|++||+++|+||+|+  
T Consensus       212 ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~----~L~~i~~l~~k~~~~LIvDEa~s~g  287 (481)
T PLN02822        212 LSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA----PLDEIVRLKEKYRFRVLLDESNSFG  287 (481)
T ss_pred             HcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCcccc
Confidence            346789999999999999888641       234 7999999999999987    69999999999999999999996  


Q ss_pred             CcCCcCcccccccCCC---CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCCCCCc--HHHHHHHHHHHHHH
Q psy6547          85 GLGRTGKLLAIHYEDV---RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVI  157 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~---~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~l~~~  157 (266)
                      .+|++|.+ ....+++   .+|+++  |||+++..   .||+++++++++.++...+..+|+++  +..++++.++|+.+
T Consensus       288 vlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~~---GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l  363 (481)
T PLN02822        288 VLGKSGRG-LSEHFGVPIEKIDIITAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (481)
T ss_pred             ccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhhC---CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH
Confidence            24555554 3455665   678877  88999822   36788999999888766677778765  77788888899887


Q ss_pred             hh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHH-HCCceeccC
Q psy6547         158 LE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMK-DAGLVTKPI  229 (266)
Q Consensus       158 ~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~gi~~~~~  229 (266)
                      +. +++.++++++++++++.|++ +.  .+.....+.+   |++++.+++..      .....+++++|+ ++||++.+.
T Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~-~~--g~~~~~~~~s---pi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~  437 (481)
T PLN02822        364 EDNPSVLAKLKENIALLHKGLSD-IP--GLSIGSNTLS---PIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVS  437 (481)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHh-cC--CcccCCCCCC---CEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEee
Confidence            65 57889999999999999998 42  1221011223   48888886410      112467999998 889999864


Q ss_pred             ---------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 ---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                               ....+|++++..+|+++|++++++|++++.+++.
T Consensus       438 ~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~  480 (481)
T PLN02822        438 KRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK  480 (481)
T ss_pred             CCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                     1346999999999999999999999999988654

>KOG1403|consensus

Probab=99.94  E-value=1.7e-26  Score=185.17  Aligned_cols=227  Identities=26%  Similarity=0.419  Sum_probs=197.2

Q ss_pred             HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547          29 DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD  103 (266)
Q Consensus        29 ~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d  103 (266)
                      +.+++++..    ...+++++.|+.++++|.+.+|..+.+++++..+.+|.+.|.||++.||||.|. .|+++.+++.||
T Consensus       194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD  273 (452)
T KOG1403|consen  194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD  273 (452)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc
Confidence            556666532    337899999999999999999999999999999999999999999999999997 467888999999


Q ss_pred             eeeecccccCCchhhhhheecHHhhhccCC--CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Q psy6547         104 IVILGKALSGGLYPISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      +++++|.+|+| .|+++++..+++.+.+..  .....||++||++++++++.++.++.|++++|.++.+.++...|++ +
T Consensus       274 IVtmgKpmGNG-hPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~-~  351 (452)
T KOG1403|consen  274 IVTMGKPMGNG-HPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRR-L  351 (452)
T ss_pred             hheecccCCCC-CeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-H
Confidence            99999999999 999999999999998874  4678999999999999999999999999999999999999999998 5


Q ss_pred             c-c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHC-CceeccC--CCCEEEEeccCCCCHHHHHHH
Q psy6547         182 N-K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDA-GLVTKPI--SNNIIRLSPALNITEQELREG  250 (266)
Q Consensus       182 ~-~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~-gi~~~~~--~~~~iR~~~~~~~t~~~i~~~  250 (266)
                      . . ..+++ ++|.|+   |+.+++..+.      ...+..+..+|++. +|++..-  +.+.+.+-|+.+.++++.++.
T Consensus       352 k~kh~~IGD-vRGvGL---FiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~  427 (452)
T KOG1403|consen  352 KQKHECIGD-VRGVGL---FIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEF  427 (452)
T ss_pred             hhhccceec-cccceE---EEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHH
Confidence            4 3 56677 999999   9999987532      12345567788754 7988854  458899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy6547         251 LDIIINTINTM  261 (266)
Q Consensus       251 ~~~l~~~~~~~  261 (266)
                      +..|++++..+
T Consensus       428 v~~ld~iLT~m  438 (452)
T KOG1403|consen  428 VLGLDEILTVM  438 (452)
T ss_pred             HHHHHHHHHHH
Confidence            99999988755

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.94  E-value=5.8e-25  Score=192.13  Aligned_cols=238  Identities=17%  Similarity=0.202  Sum_probs=175.4

Q ss_pred             CCCceeecCCCHHHHHHHHhc------------CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKS------------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~------------~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ..+++.++|+|++++++.+++            .+++++|++|++++++|.+.    ++++++++|++||+++|+||+|+
T Consensus       103 ~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~----~l~~i~~l~~~~g~~livDe~~~  178 (392)
T PLN03227        103 RANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA----PLKELVALKEEFHYRLILDESFS  178 (392)
T ss_pred             CCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc----CHHHHHHHHHHcCCEEEEECccc
Confidence            457888999998888876542            12578999999999999987    69999999999999999999995


Q ss_pred             --CcCCcCcccccccCCCCc----CeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCc--HHHHHHHHHHHHH
Q psy6547          85 --GLGRTGKLLAIHYEDVRP----DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDV  156 (266)
Q Consensus        85 --~~~~~g~~~~~~~~~~~~----d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~l~~  156 (266)
                        .+++.|. +..+.+|+.|    |++++|++-+.| ...|++++++++++.++...+..+|+++  |+.++++..+++.
T Consensus       179 ~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~  256 (392)
T PLN03227        179 FGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAG  256 (392)
T ss_pred             ccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHH
Confidence              2344455 4566777777    888855332223 4567788898888776655566677665  7677777777755


Q ss_pred             -HhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecC-----ccceeeEEEEeeCcc-------chHHHHHHHHHHCC
Q psy6547         157 -ILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG-----LKKSINTLILSVSAI-------LEVYDVCIKMKDAG  223 (266)
Q Consensus       157 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g  223 (266)
                       .+.+++.++++++++++++.|++ .+.+.+.. +++.+     ..+|++.+.+.+...       ....+++++|.++|
T Consensus       257 ~~~~~~~~~~l~~~~~~l~~~L~~-~~~~~~~~-~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G  334 (392)
T PLN03227        257 ELAGPQLLNRLHDSIANLYSTLTN-SSHPYALK-LRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEG  334 (392)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHh-cCCccccc-cccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCC
Confidence             44567899999999999999986 44333322 33311     134589999865110       01358999999999


Q ss_pred             ceeccC-----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         224 LVTKPI-----------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       224 i~~~~~-----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +++.+.           .+..+|++++..+|++|++++++.|++++++..
T Consensus       335 i~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~  384 (392)
T PLN03227        335 VAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL  384 (392)
T ss_pred             CEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            988642           246789999999999999999999999988764

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.94  E-value=2.1e-25  Score=198.12  Aligned_cols=249  Identities=21%  Similarity=0.224  Sum_probs=195.0

Q ss_pred             cCCcCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      .+++...+.|..++.+++.||.+    |+++|++.++++ ++++++++|. +|++|.+ ++.+..++|.++|++||++||
T Consensus       187 PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~-~~k~~y~~P~~qNPtG~t-ms~~rR~~Ll~lA~~~~~~II  264 (459)
T COG1167         187 PTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQW-KPKAVYVTPTFQNPTGVT-MSLERRKALLALAEKYDVLII  264 (459)
T ss_pred             CCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhc-CCcEEEECCCCCCCCCCc-cCHHHHHHHHHHHHHcCCeEE
Confidence            35566667889999999999976    699999999765 7999999997 5555655 999999999999999999999


Q ss_pred             EeccccCcCCcCcc----cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          79 ADEVQTGLGRTGKL----LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        79 ~De~~~~~~~~g~~----~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +||.|+.|...+.+    .+++..+....+.+|||.+++| +|+||+++++++.+.+....+..+.+++.+.+.+...-+
T Consensus       265 EDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l  343 (459)
T COG1167         265 EDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPG-LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFL  343 (459)
T ss_pred             eeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccc-cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999887544332    2344445677888899999999 999999999999999888888889999999988877655


Q ss_pred             HH--Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-C
Q psy6547         155 DV--ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-I  229 (266)
Q Consensus       155 ~~--~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~  229 (266)
                      ..  +..  ..++..++++++.+.+.|.+.++ ..+....+..|+   |+|+.+++  +.+..++..+++++|+.+.| +
T Consensus       344 ~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~-~~~~~~~p~gG~---flwl~l~~--~~~~~~l~~~a~~~gv~i~~~g  417 (459)
T COG1167         344 LSGHYDRHLRRLRREYARRRDALLEALAEYLP-ELATWTRPEGGL---FLWLELPE--GIDARELLAAALEKGVVVTPLG  417 (459)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeeeecCCceE---EEEEEcCC--CCCHHHHHHHHHHCCCEEEcCC
Confidence            41  111  23444455555556566666222 233332445689   99999999  78899999999999999998 3


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                              ..+++|++++.. +++++++++++|.+.+.+..
T Consensus       418 ~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         418 SAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             ccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHh
Confidence                    135899998755 79999999999999988754

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.94  E-value=1.1e-24  Score=191.92  Aligned_cols=227  Identities=18%  Similarity=0.220  Sum_probs=173.6

Q ss_pred             CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL   92 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~   92 (266)
                      +.++..++++|++++++++++.  +++++|+++++++++|.+.    ++++|.++|++||+++|+||+|+ | +++.|..
T Consensus       153 ~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~----~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g  228 (407)
T PRK09064        153 RCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA----PIAEICDLADKYNALTYLDEVHAVGMYGPRGGG  228 (407)
T ss_pred             CCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc----CHHHHHHHHHHcCCEEEEECCCcccccCCCCCC
Confidence            4456788899999999999642  3679999999999999887    79999999999999999999996 5 5666654


Q ss_pred             cccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhcc-HHHH
Q psy6547          93 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEEN-MIEN  165 (266)
Q Consensus        93 ~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~  165 (266)
                      + ....++  .+|++  +|||+++.   ..||+++++++++.+....  ...+.+.++..++++.++++.++..+ ..++
T Consensus       229 ~-~~~~~~~~~~div~~t~sKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~  304 (407)
T PRK09064        229 I-AERDGLMDRIDIIEGTLAKAFGV---MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERER  304 (407)
T ss_pred             h-HHhcCCCCCCeEEEEecchhhhc---cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3 233343  45776  79999972   2367888888877665322  22344677888888999999887643 4588


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS  237 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~  237 (266)
                      +.++++++++.|++ ++...+.    +.+.   ++.+.++.  ...+.+++++|++ +||++++.       +.+++|++
T Consensus       305 ~~~~~~~l~~~L~~-~g~~~~~----~~~~---iv~i~~~~--~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis  374 (407)
T PRK09064        305 HQERAAKLKAALDA-AGIPVMP----NESH---IVPVMVGD--PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRIT  374 (407)
T ss_pred             HHHHHHHHHHHHHH-cCCCCCC----CCCC---EEEEEeCC--HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEE
Confidence            89999999999988 5533222    2344   77777754  3457789999875 59999753       23689999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++.+|++|++++++.|+++++++
T Consensus       375 ~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        375 PTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999988764

>KOG1405|consensus

Probab=99.93  E-value=5e-25  Score=180.12  Aligned_cols=220  Identities=24%  Similarity=0.314  Sum_probs=190.7

Q ss_pred             HHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC--C
Q psy6547          28 VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--R  101 (266)
Q Consensus        28 ~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~--~  101 (266)
                      ++++|++|.++    ..++++++||+++.+|.-..++++++.|++++++||+.+|+||+++|-|.+|..|+.++|++  -
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            78888888653    27899999999999999999999999999999999999999999999999999999999987  6


Q ss_pred             cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547         102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      ||+++|||-|. ||+      .-.+++ ..-+++.+..||.+.|.-+..+..+++.+..+++.+++...++.+..+|.+ 
T Consensus       335 pD~vTFSKK~q~gGf------fh~~~f-rpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~-  406 (484)
T KOG1405|consen  335 PDVVTFSKKFQTGGF------FHDEEF-RPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLE-  406 (484)
T ss_pred             ccceehhhhhhcCcc------ccCccc-CCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Confidence            89999999887 552      122222 233456789999999998888999999999999999999999999999998 


Q ss_pred             ccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         181 ANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       181 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +..  +..-...+|.|.   |..+++++  +...+.++..++-+|+.+..++...||+.|++..++...+-+++++++.+
T Consensus       407 Lq~~~p~~~~~~RGrGT---F~a~d~ps--~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l  481 (484)
T KOG1405|consen  407 LQAKYPGKINNLRGRGT---FIAWDCPS--GSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKIL  481 (484)
T ss_pred             HHHhCchhhhcccccce---EEEEeCCC--hHHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHh
Confidence            553  333333788999   99999998  66678899999999999999999999999999999999999999999988


Q ss_pred             HH
Q psy6547         259 NT  260 (266)
Q Consensus       259 ~~  260 (266)
                      ++
T Consensus       482 ~~  483 (484)
T KOG1405|consen  482 AG  483 (484)
T ss_pred             cc
Confidence            65

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=1.3e-24  Score=190.07  Aligned_cols=221  Identities=12%  Similarity=0.109  Sum_probs=166.8

Q ss_pred             CCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLA   94 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~   94 (266)
                      .+++.++|||+++|++++++.+ +.+.|++|+++++.|.+.    ++++|.++|++||+.+|+||+|+.  +|..|.+ .
T Consensus       226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia----pL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G-~  300 (476)
T PLN02955        226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA----PMEELSQLRKKYGFLLVIDDAHGTFVCGENGGG-V  300 (476)
T ss_pred             ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC----CHHHHHHHHHHcCcEEEEcccccCceecCCCCc-H
Confidence            5688899999999999997643 568899999999999987    799999999999999999999953  3444443 3


Q ss_pred             cccCCCCcCe----eeecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHHHHHHHhhc-cHHHHHH
Q psy6547          95 IHYEDVRPDI----VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE-NMIENAY  167 (266)
Q Consensus        95 ~~~~~~~~d~----~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~-~~~~~~~  167 (266)
                      ...+++.+++    .+|||++|   .+.|++++++++++.++.......|  ..++..++++.++++.+..+ ..++++.
T Consensus       301 ~e~~g~~~di~ii~~TLsKA~G---~~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~  377 (476)
T PLN02955        301 AEEFNCEADVDLCVGTLSKAAG---CHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIW  377 (476)
T ss_pred             HHHhCCCCCCcEEEEeCccchh---ccCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3455554443    66999998   2245688888888777643222222  34455667778888887654 4567777


Q ss_pred             HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEEeccC
Q psy6547         168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPAL  240 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~~~~~  240 (266)
                      ++.+++++.+       ++..       .+|++.+.+.+  ...+.++.++|+++||++.+.       +...+|++++.
T Consensus       378 ~n~~~fr~~~-------G~~~-------~sPI~pI~ig~--~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA  441 (476)
T PLN02955        378 ERVKEFKALS-------GVDI-------SSPIISLVVGN--QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSA  441 (476)
T ss_pred             HHHHHHHHhc-------CCCC-------CCCEEEEEeCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCC
Confidence            7777777631       1211       35799999987  567888999999999998742       44689999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Q psy6547         241 NITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+|++||+++++.|.++.+...
T Consensus       442 ~Ht~edId~lv~~L~~~~~~~~  463 (476)
T PLN02955        442 AHTTEDVKKLITALSSCLDFDN  463 (476)
T ss_pred             CCCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999998876643

>PRK07324 transaminase; Validated

Probab=99.93  E-value=7.3e-25  Score=190.72  Aligned_cols=234  Identities=17%  Similarity=0.207  Sum_probs=169.0

Q ss_pred             CCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          14 GPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ..++.+++.++.       .|++++++.+  .+++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|.++
T Consensus       122 ~~~g~~v~~v~~~~~~~~~~d~~~l~~~~--~~~~kli~i~~p~NPtG~~-~~~~~l~~i~~~a~~~~~~ii~De~y~~l  198 (373)
T PRK07324        122 ESLGAEVDYWQLKEENGWLPDLDELRRLV--RPNTKLICINNANNPTGAL-MDRAYLEEIVEIARSVDAYVLSDEVYRPL  198 (373)
T ss_pred             HHcCCEEEEEecccccCCCCCHHHHHHhC--CCCCcEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence            445677887774       3688888887  4568899998889999987 89999999999999999999999999887


Q ss_pred             CCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547          87 GRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM  162 (266)
Q Consensus        87 ~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~  162 (266)
                      ...+...+ .+..+....+.++||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+++..+.  +..
T Consensus       199 ~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~  277 (373)
T PRK07324        199 DEDGSTPSIADLYEKGISTNSMSKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERN  277 (373)
T ss_pred             ccCCCCCChhhccCCEEEEecchhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHH
Confidence            44332111 122223344556999999 89 99999999999888887766666777888888888777753221  223


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC----CCEEEEe
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS----NNIIRLS  237 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~iR~~  237 (266)
                      .+.++++++.+.+.|++ .+  .+....+..|.   ++++.++.  +.+..+|+++|+ ++||.+.|+.    .+++|++
T Consensus       278 ~~~~~~~~~~l~~~l~~-~~--~~~~~~p~gg~---~~~i~~~~--~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis  349 (373)
T PRK07324        278 RKIVRTNLAILDEWVAK-EP--RVSYVKPKAVS---TSFVKLDV--DMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG  349 (373)
T ss_pred             HHHHHHHHHHHHHHHhc-CC--CceEECCCceE---EEEEEeCC--CCCHHHHHHHHHHhcCEEEECccccCCCCeEEEE
Confidence            44455555666666655 22  22221222344   56666654  346788999975 6799999873    4799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .  ..+++.+++++++|.+++++.
T Consensus       350 ~--~~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        350 Y--CCDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             e--cCCHHHHHHHHHHHHHHHHhc
Confidence            4  567999999999999998764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.93  E-value=5.7e-24  Score=187.07  Aligned_cols=227  Identities=18%  Similarity=0.206  Sum_probs=170.4

Q ss_pred             CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL   92 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~   92 (266)
                      +.+++.++++|++++++++++.  +++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+ | ++..|..
T Consensus       152 g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~----~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g  227 (402)
T TIGR01821       152 GAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA----PIEEICDLADKYGALTYLDEVHAVGLYGPRGGG  227 (402)
T ss_pred             CCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEeCcccccccCCCCCc
Confidence            3455678899999999999642  2579999999999999986    79999999999999999999996 4 3444443


Q ss_pred             cccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhc-cHHHH
Q psy6547          93 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEE-NMIEN  165 (266)
Q Consensus        93 ~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~  165 (266)
                      . ....++  .+|++  ++||++++   ..||+++++++++.+....  ...+.+.++..++++.++|+.++.. .+.++
T Consensus       228 ~-~~~~~~~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~  303 (402)
T TIGR01821       228 I-AERDGLMHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRA  303 (402)
T ss_pred             c-chhccCCCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHH
Confidence            2 233343  35666  79999983   1367888888887775322  2234567888899999999987764 35666


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS  237 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~  237 (266)
                      ..++++++++.|++ ++...+    .+.+.   ++.+.++.  ...+.+++++|++ +||++++.       +.+++|++
T Consensus       304 ~~~~~~~l~~~L~~-~g~~~~----~~~~~---i~~i~~~~--~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis  373 (402)
T TIGR01821       304 HQENVKRLKNLLEA-LGIPVI----PNPSH---IVPVIIGD--AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRIT  373 (402)
T ss_pred             HHHHHHHHHHHHHH-cCCCcC----CCCCC---EEEEEeCC--HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEE
Confidence            77889999999987 543322    22355   77776654  3356789999875 59998752       34689999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++.+|++|++++++.|+++++++
T Consensus       374 ~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       374 PTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=6.5e-24  Score=186.86  Aligned_cols=227  Identities=17%  Similarity=0.193  Sum_probs=172.7

Q ss_pred             CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc-CCcCcc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKL   92 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~-~~~g~~   92 (266)
                      +.+++.++|+|++++++.+++.  +++++|+++++++++|.+.    ++++|.++|+++|+++|+||+|+ |+ ++.|..
T Consensus       152 g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~----~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g  227 (406)
T PRK13393        152 RAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA----PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGG  227 (406)
T ss_pred             CCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh----CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence            4567889999999999998642  3678999999999999987    79999999999999999999995 54 666654


Q ss_pred             cccccCCCC--cCee--eecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhhcc-HHHH
Q psy6547          93 LAIHYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEEN-MIEN  165 (266)
Q Consensus        93 ~~~~~~~~~--~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~-~~~~  165 (266)
                      +. ...++.  ++++  ++||+++.   ..||+++++++.+.+......  .+.+.++..++++.++|+.++... ...+
T Consensus       228 ~~-~~~~~~~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~  303 (406)
T PRK13393        228 IA-EREGLADRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERER  303 (406)
T ss_pred             hh-hhcCCCCCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHH
Confidence            42 344443  4665  79999983   236788888887776643322  355678888899999999876543 3456


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS  237 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~  237 (266)
                      +.++++++++.|++ ++...    .++.|.   |+.+.+.+  ..++.++.++|++ +||++++.       +.+++|++
T Consensus       304 ~~~~~~~l~~~L~~-~g~~~----~~~~~~---i~~v~~~~--~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis  373 (406)
T PRK13393        304 HQDRVARLRARLDK-AGIPH----LPNPSH---IVPVMVGD--PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRIT  373 (406)
T ss_pred             HHHHHHHHHHHHHH-cCCCc----CCCCCC---eEEEEeCC--HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEE
Confidence            67888899999887 54322    234455   77776644  3356789999987 59998752       34789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++.+|++|+++++++|++++.++
T Consensus       374 ~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        374 PSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999988764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.93  E-value=5e-24  Score=182.44  Aligned_cols=226  Identities=20%  Similarity=0.216  Sum_probs=175.9

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-cC
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~~   87 (266)
                      .....+++.+.|||+++||++|++.+    +.+.|+++.++++.|.+.    +|++|.+++++||.++++||+| .| +|
T Consensus       141 rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA----pL~~l~~L~~ky~a~L~VDEAHa~Gv~G  216 (388)
T COG0156         141 RLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA----PLPELVELAEKYGALLYVDEAHAVGVLG  216 (388)
T ss_pred             HhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC----CHHHHHHHHHHhCcEEEEEccccccccC
Confidence            45677899999999999999997632    368999999999999998    9999999999999999999999 33 45


Q ss_pred             CcCcccccccCCCC-----cCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          88 RTGKLLAIHYEDVR-----PDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        88 ~~g~~~~~~~~~~~-----~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      ..|.++. ...|+.     .-+.++||+||+.   .|++.+++.+.+.+....  ...+-+.+|..++++..+++.+.. 
T Consensus       217 ~~GrG~~-e~~g~~~~~vdi~~gTlsKAlGs~---Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~  292 (388)
T COG0156         217 PNGRGLA-EHFGLEPEEVDIIVGTLGKALGSS---GGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG  292 (388)
T ss_pred             CCCccHH-HHhCCCCccceEEEEEchhhhccc---CceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC
Confidence            5555432 334543     3345599999943   567999999988887542  233334567778888999999886 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCC
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNN  232 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~  232 (266)
                      .+.++++.++.+.+++.+.. .+...       .+..+|++.+.+.+  ...+.++...|+++||.+.+.       +..
T Consensus       293 ~~~r~~L~~~~~~~~~~~~~-~~~~~-------~~s~s~I~pv~~gd--~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gta  362 (388)
T COG0156         293 PERRERLQELAAFFRSLLKA-LGLVL-------LPSESPIIPVILGD--EERALEASRALLEEGIYVSAIRPPTVPKGTA  362 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCcc-------CCCCCCeeeeEeCC--HHHHHHHHHHHHHCCeeEeeecCCCCCCCcc
Confidence            46888899999999866555 33221       12256799999988  567889999999999998743       457


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .+|++++..+|++||+++++.|.+.
T Consensus       363 rlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         363 RLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999998764

>PRK07682 hypothetical protein; Validated

Probab=99.93  E-value=1.6e-24  Score=189.08  Aligned_cols=234  Identities=14%  Similarity=0.127  Sum_probs=169.0

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.-.+.+++.++.       .|++++++++  .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.+
T Consensus       122 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~~~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~  198 (378)
T PRK07682        122 VTLAGGVPVPVATTLENEFKVQPAQIEAAI--TAKTKAILLCSPNNPTGAV-LNKSELEEIAVIVEKHDLIVLSDEIYAE  198 (378)
T ss_pred             HHHcCCEEEEeecCCccCCCCCHHHHHhhc--CcccEEEEEECCCCCcCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhh
Confidence            3445566666653       2689999988  3467888776678888876 8999999999999999999999999987


Q ss_pred             cCCcCccccc-ccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--
Q psy6547          86 LGRTGKLLAI-HYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--  158 (266)
Q Consensus        86 ~~~~g~~~~~-~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--  158 (266)
                      +...+...+. ...   .....+.+|||.++ +| +|+||+++++++++.+........++.+++.+.++..+|+...  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  277 (378)
T PRK07682        199 LTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDD  277 (378)
T ss_pred             cccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHH
Confidence            7543322111 111   22334555999999 89 9999999999998887654444556678888888888875421  


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN  231 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~  231 (266)
                      .+..+++++++++.+.+.|++ ++.   ....+..|.   ++|..++.. +.+..+++++|+ ++||.+.|+      +.
T Consensus       278 ~~~~~~~~~~~~~~~~~~L~~-~~~---~~~~p~g~~---~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~  349 (378)
T PRK07682        278 VIRMRDSYRKRRNFFVTSFNE-IGL---TCHVPGGAF---YAFPSISST-GLSSEEFAEQLLLEEKVAVVPGSVFGESGE  349 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCC---ccCCCCeeE---EEEEeccCC-CCCHHHHHHHHHHhCCEEEcCchhhCcCCC
Confidence            134567778888888888887 432   221223455   666666421 346788998876 789999975      25


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +++|++..  .+++++++++++|++++++
T Consensus       350 ~~iRis~~--~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        350 GFIRCSYA--TSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             CeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence            89999954  5799999999999998865

>PLN00175 aminotransferase family protein; Provisional

Probab=99.93  E-value=1.4e-24  Score=191.13  Aligned_cols=235  Identities=17%  Similarity=0.211  Sum_probs=172.3

Q ss_pred             ccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          12 EFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      .+...+.+++.++..      |+++|++.+  .++++++++++++|++|.+ ++.+.+++|+++|++||++||+||+|.+
T Consensus       155 ~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~--~~~~k~i~i~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~De~Y~~  231 (413)
T PLN00175        155 TLSMAGAKIKTVTLRPPDFAVPEDELKAAF--TSKTRAILINTPHNPTGKM-FTREELELIASLCKENDVLAFTDEVYDK  231 (413)
T ss_pred             HHHHcCCEEEEEECCcccCCCCHHHHHHhc--CcCceEEEecCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEecccCc
Confidence            344567777777642      688999988  4468999988889999977 8999999999999999999999999987


Q ss_pred             cCCcCccccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          86 LGRTGKLLAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        86 ~~~~g~~~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      +...+...+. ..   .+....+.+|||.++ +| +|+||+++++++++.+.......+++.+.+.+.++..+|+..+. 
T Consensus       232 l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~  310 (413)
T PLN00175        232 LAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESY  310 (413)
T ss_pred             cccCCcccChhhCCCCcCcEEEEecchhhccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHH
Confidence            6433322111 11   122334455999999 99 99999999999988877655556778888899888888854211 


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--------
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI--------  229 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~--------  229 (266)
                       ++..++++++++.+.+.|++ .+   +....+..|.   |+|+.+...+..+..+|+++|+ ++||.+.|+        
T Consensus       311 ~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~g~~---f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~  383 (413)
T PLN00175        311 YEELKRDYSAKKDILVEGLKE-VG---FKVYPSSGTY---FVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPE  383 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeeE---EEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCC
Confidence             34567777888888888877 43   2221223456   7888764211124678999987 569999875        


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                       +.+++|++..  .+++++++++++|.++++
T Consensus       384 ~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        384 DGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             CCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence             1368999954  589999999999998875

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.3e-24  Score=188.49  Aligned_cols=243  Identities=14%  Similarity=0.132  Sum_probs=171.6

Q ss_pred             CcCcccccCCCCCCceeecCC----------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN----------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~----------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      ++.....+..++.+++.++.+          |+++|++.++  +++++++++.++|++|.+ ++.+.+++|+++|++||+
T Consensus       136 y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~--~~~k~v~l~~P~NPTG~~-~s~e~l~~l~~~a~~~~~  212 (405)
T PRK06207        136 YFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK--AGVRVFLFSNPNNPAGVV-YSAEEIAQIAALARRYGA  212 (405)
T ss_pred             chhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh--hcCeEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCC
Confidence            333334455567777777642          7899999884  357777777778889987 899999999999999999


Q ss_pred             EEEEeccccCcCCcCccc-cccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547          76 LFIADEVQTGLGRTGKLL-AIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL  149 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~~-~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  149 (266)
                      +||+||+|..+...|..+ ....    .+....+.+|||.++ +| +|+||+++++++.+.+.........+.+.+.+.+
T Consensus       213 ~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a  291 (405)
T PRK06207        213 TVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAV  291 (405)
T ss_pred             EEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHH
Confidence            999999998774434321 1111    122344555999999 99 9999999999988887654444455566677888


Q ss_pred             HHHHHHHHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCcee
Q psy6547         150 AMTALDVIL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVT  226 (266)
Q Consensus       150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~  226 (266)
                      +..+++.-.  -++..++++++++.+.+.|++ +.  .+....+..|+   |+|+.++.. ..+..+++++|+ ++||.+
T Consensus       292 ~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~gg~---fl~~~l~~~-~~~~~~~~~~l~~~~gV~v  364 (405)
T PRK06207        292 LRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VE--GVFVRAPQAGS---YLFPRLPRL-AVSLHDFVKILRLQAGVIV  364 (405)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCeeE---EEEEeCccc-CCCHHHHHHHHHHhcCEEE
Confidence            777775311  123344555566666666665 32  23321234577   999998741 235788999997 689999


Q ss_pred             ccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         227 KPIS------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       227 ~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .|+.      .+++|++..  .+++++++++++|.+++++.
T Consensus       365 ~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        365 TPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             eCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            9852      579999955  58999999999999998764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.92  E-value=2.5e-24  Score=189.14  Aligned_cols=237  Identities=15%  Similarity=0.166  Sum_probs=174.1

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ++|.+...+..++.+++.++.+       |++++++.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||++|
T Consensus       126 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~v~l~~P~NPTG~~-~s~~~~~~i~~~a~~~~~~i  202 (399)
T PRK07681        126 GYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI--ADKAKMMILNFPGNPVPAM-AHEDFFKEVIAFAKKHNIIV  202 (399)
T ss_pred             CccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhc--cccceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeEE
Confidence            4455555566778888888753       578888777  3467888888678888977 89999999999999999999


Q ss_pred             EEeccccCcCCcCcc-ccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKL-LAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        78 i~De~~~~~~~~g~~-~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      |+||+|.++...+.. ... ..   .+....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++.
T Consensus       203 I~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~  281 (399)
T PRK07681        203 VHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAAC  281 (399)
T ss_pred             EEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence            999999876433321 111 11   123344566999998 99 999999999999888876555556778888888888


Q ss_pred             HHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceecc
Q psy6547         152 TALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKP  228 (266)
Q Consensus       152 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~  228 (266)
                      .+++....  +...+.++++++.+.+.|++ .+   +....+..|.   ++|+.++.  +.+..+++.+|++ +||.+.|
T Consensus       282 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~~g~---f~~~~l~~--~~~~~~~~~~l~~~~gv~v~p  352 (399)
T PRK07681        282 AALRNGAAFCEKNRGIYQERRDTLVDGFRT-FG---WNVDKPAGSM---FVWAEIPK--GWTSLSFAYALMDRANVVVTP  352 (399)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeee---EEEEECCC--CCCHHHHHHHHHHhCCEEEeC
Confidence            77754211  23455666677777777776 43   2221234577   99999876  5667889999887 8999988


Q ss_pred             C------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         229 I------SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       229 ~------~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +      +.+++|++..  .+++++++++++|++
T Consensus       353 g~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        353 GHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             ChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            5      2469999955  678999999999987

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.3e-24  Score=187.34  Aligned_cols=236  Identities=16%  Similarity=0.173  Sum_probs=171.6

Q ss_pred             ccccCCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          10 YNEFGPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ...+...+.+++.++.+        |++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|+++|+++|+||
T Consensus       122 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~--~~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De  198 (382)
T PRK06108        122 VAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI--TPRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADE  198 (382)
T ss_pred             HHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeh
Confidence            33345567788888763        578998888  3467888887788888877 899999999999999999999999


Q ss_pred             cccCcCCc-Ccc-cc-cccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          82 VQTGLGRT-GKL-LA-IHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        82 ~~~~~~~~-g~~-~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +|.++... +.. .. ....   +....+.++||.++ +| +|+||+++++++.+.+.......+.+.+++.+.++..+|
T Consensus       199 ~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l  277 (382)
T PRK06108        199 VYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAAL  277 (382)
T ss_pred             hhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence            99876432 111 11 1111   12233445999998 88 999999999988887765444445667888888888888


Q ss_pred             HHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--
Q psy6547         155 DVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI--  229 (266)
Q Consensus       155 ~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~--  229 (266)
                      +....  +++.++++++++.+.+.|++ +.  .+....+..|+   ++|+.++.  ..+..+++++|+ ++||.+.|+  
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~p~~g~---~~~~~l~~--~~~~~~~~~~ll~~~gV~v~pg~~  349 (382)
T PRK06108        278 DEGEDFVAELVARLRRSRDHLVDALRA-LP--GVEVAKPDGAM---YAFFRIPG--VTDSLALAKRLVDEAGLGLAPGTA  349 (382)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcccCCCeeE---EEEEeCCC--CCCHHHHHHHHHHhCCEEEeCchh
Confidence            64321  34677778888888888876 42  22221223466   77888875  446788999886 679999875  


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                          +.+++|++++.  +++++++++++|.++++
T Consensus       350 f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        350 FGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             hCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence                25799999775  89999999999998764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.92  E-value=5.5e-24  Score=186.32  Aligned_cols=239  Identities=13%  Similarity=0.198  Sum_probs=173.3

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.+     |+++|++.+  .++++++++.+++|++|.+ ++.+.+++|.++|+++|+++|+||+|.++.
T Consensus       130 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i--~~~~klv~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~li~De~y~~~~  206 (389)
T PRK05957        130 ITMAGCQPILVPTDDNYQLQPEAIEQAI--TPKTRAIVTISPNNPTGVV-YPEALLRAVNQICAEHGIYHISDEAYEYFT  206 (389)
T ss_pred             HHhcCCEEEEeecCCCCCcCHHHHHHhc--CcCceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence            34556677777643     689999988  4468888888888889987 899999999999999999999999998764


Q ss_pred             CcCcc-cc-c---ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--h
Q psy6547          88 RTGKL-LA-I---HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E  159 (266)
Q Consensus        88 ~~g~~-~~-~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~  159 (266)
                      ..+.. .. .   +.......+.+|||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++.-.  -
T Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  285 (389)
T PRK05957        207 YDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYC  285 (389)
T ss_pred             CCCCCccChhhCCCccCcEEEEecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHH
Confidence            33211 11 1   11122344566999998 89 9999999999998888765444445566678887777775311  1


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC------CC
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS------NN  232 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------~~  232 (266)
                      ++..++++++++.+.+.|++ ++.. +.......|+   ++|+.++.  +.+..+++++|. ++||.+.|+.      .+
T Consensus       286 ~~~~~~~~~~r~~l~~~L~~-~~~~-~~~~~~~gg~---~~~~~~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~  358 (389)
T PRK05957        286 QQHLPEIAQVRQILLKSLGQ-LQDR-CTLHPANGAF---YCFLKVNT--DLNDFELVKQLIREYRVAVIPGTTFGMKNGC  358 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCC-ccccCCCeeE---EEEEeCCC--CCChHHHHHHHHHHCCEEEccchhhCCCCCC
Confidence            33455677777778788876 4321 1221233467   88988876  567889999987 5899999862      35


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ++|++.+. .+++++++++++|.+.++++..
T Consensus       359 ~iRis~~~-~~~~~l~~~~~~l~~~~~~~~~  388 (389)
T PRK05957        359 YLRIAYGA-LQKATAKEGIERLVQGLKTIVQ  388 (389)
T ss_pred             EEEEEEec-CCHHHHHHHHHHHHHHHHhhhc
Confidence            89999653 4789999999999999988654

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.92  E-value=9.1e-24  Score=184.66  Aligned_cols=232  Identities=19%  Similarity=0.217  Sum_probs=166.8

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.-.+..++.++.       .|+++|++.++  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus       130 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii~De~y~~  206 (384)
T PRK06348        130 IEMVGGKPIILETYEEDGFQINVKKLEALIT--SKTKAIILNSPNNPTGAV-FSKETLEEIAKIAIEYDLFIISDEVYDG  206 (384)
T ss_pred             HHHcCCEEEEecCCcCcCCcCCHHHHHHhhC--cCccEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEeccccc
Confidence            3444556676652       36899999883  457888877778888877 8999999999999999999999999987


Q ss_pred             cCCcCcccc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          86 LGRTGKLLA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        86 ~~~~g~~~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      +...+....   +.. .+....+.+|||.++ +| +|+||+++++++.+.+........++.+++.+.++..+++..+. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  285 (384)
T PRK06348        207 FSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTI  285 (384)
T ss_pred             ceeCCCccchhhcCCCcCcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHH
Confidence            643222111   111 122334555999999 99 99999999999888777555556677888898888888764321 


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN  231 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~  231 (266)
                       +.+.+.++++.+.+.+.|+. ++.  +.......|.   ++|+.++.. +.+..++++.|+ ++||.+.|+      +.
T Consensus       286 ~~~~~~~~~~r~~~~~~~L~~-~~~--~~~~~p~gg~---~~~~~~~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~  358 (384)
T PRK06348        286 VPLIKEEFQKRLEYAYKRIES-IPN--LSLHPPKGSI---YAFINIKKT-GLSSVEFCEKLLKEAHVLVIPGKAFGESGE  358 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCC--ceeccCCeeE---EEEEecccC-CCCHHHHHHHHHHhCCEEEcCchhhccCCC
Confidence             23556667777778888876 432  2221223466   778888631 346788999886 579999975      24


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +++|++.  ..+++++++++++|.+.
T Consensus       359 ~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        359 GYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             CeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            7999995  46899999999998753

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.5e-23  Score=183.17  Aligned_cols=234  Identities=13%  Similarity=0.164  Sum_probs=165.9

Q ss_pred             CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      -.+.+++.++.        .|++++++.+  .++++++++..++|++|.+ ++.+++++|.++|+++|+++|+||+|.+|
T Consensus       126 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NptG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~  202 (380)
T PRK06225        126 RFGAEVIEVPIYSEECNYKLTPELVKENM--DENTRLIYLIDPLNPLGSS-YTEEEIKEFAEIARDNDAFLLHDCTYRDF  202 (380)
T ss_pred             HhCceEEeeccccccCCccCCHHHHHhhc--CCCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCcEEEEehhHHHH
Confidence            34667777763        2678899888  4467888866667788876 89999999999999999999999999776


Q ss_pred             CCcCcccccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547          87 GRTGKLLAIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM  162 (266)
Q Consensus        87 ~~~g~~~~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~  162 (266)
                      .. +...... ......++.++||.++ +| +|+||+++++++++.+.... ..+++.+.+++.++..+++....  +..
T Consensus       203 ~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~  279 (380)
T PRK06225        203 AR-EHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRI  279 (380)
T ss_pred             hc-cCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHH
Confidence            32 2211111 1123445667999998 88 99999999999888776532 34566788888887777754211  223


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR  235 (266)
                      .+.++++.+.+.+.|++ +....+.. .+..|.   ++|+.++.. +.+..+++++|.++||.+.++       +.+++|
T Consensus       280 ~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~g~---~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR  353 (380)
T PRK06225        280 RRTTFKNQKLIKEAVDE-IEGVFLPV-YPSHGN---MMVIDISEA-GIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIR  353 (380)
T ss_pred             HHHHHHHHHHHHHHHHh-CcCCcccc-CCCCCe---EEEEEcccc-cCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEE
Confidence            34445556666667766 32211222 234566   888887642 246789999999999999875       246899


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         236 LSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++.  ..+++++++++++|+++++++.
T Consensus       354 ~s~--~~~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        354 VSF--SIPREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             EEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence            995  4589999999999999998753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.91  E-value=7.6e-24  Score=187.82  Aligned_cols=238  Identities=16%  Similarity=0.104  Sum_probs=171.7

Q ss_pred             CcCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhc-CCEEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQY-NVLFIA   79 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~   79 (266)
                      ++.+...+...+.+++.++.+    |+++|+++++.  ++++++++| ++||+|.+ ++.+.+++|.++|+++ +++||+
T Consensus       175 y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~--~~k~i~~~p~p~NPTG~~-~s~~~~~~l~~la~~~~~~~ii~  251 (431)
T PRK15481        175 FLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQ--GARAVILTPRAHNPTGCS-LSARRAAALRNLLARYPQVLVII  251 (431)
T ss_pred             cHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhc--CCCEEEECCCCCCCCCcc-CCHHHHHHHHHHHHhcCCceEEe
Confidence            334445566777888888753    68999998843  578888885 67777776 8999999999999999 999999


Q ss_pred             eccccCcCCcCcccccc-cCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          80 DEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        80 De~~~~~~~~g~~~~~~-~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      ||+|..|...+...... .......+-+|||.+++| +|+||+++++++.+.+.......+++.+.+++.++..+|+.-.
T Consensus       252 De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~  330 (431)
T PRK15481        252 DDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPE  330 (431)
T ss_pred             cCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCcc
Confidence            99998774322111111 112233445599999999 9999999999888877643344445678888888888886321


Q ss_pred             h----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----
Q psy6547         159 E----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----  230 (266)
Q Consensus       159 ~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----  230 (266)
                      -    ++..+.++++++.+.+.|++ .+   +....+..|+   |+|+.++.    +..++++.|.++||.+.|+.    
T Consensus       331 ~~~~l~~~~~~~~~~r~~~~~~L~~-~~---~~~~~p~gg~---f~~~~l~~----~~~~~~~~l~~~gV~v~pg~~f~~  399 (431)
T PRK15481        331 YQARLAQARLFYAQRRQKLARALQQ-YG---IAIPSPGDGL---NLWLPLDT----DSQATALTLAKSGWLVREGEAFGV  399 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cC---CccccCCCeE---EEEEECCC----CHHHHHHHHHHCCcEEecCCcccc
Confidence            1    23455666677777777766 32   2221345678   99998875    46789999999999999851    


Q ss_pred             ---CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         231 ---NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       231 ---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                         .+++|++... .+++++++++++|.++++
T Consensus       400 ~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        400 SAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence               2589999664 478999999999999875

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.91  E-value=1.1e-22  Score=179.27  Aligned_cols=228  Identities=16%  Similarity=0.205  Sum_probs=168.3

Q ss_pred             CCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGK   91 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~   91 (266)
                      .+.++..++++|.+++++.+++.  +++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ | ++..|.
T Consensus       152 ~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~----~l~~i~~l~~~~~~~livDea~~~g~~g~~g~  227 (410)
T PRK13392        152 SGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIA----PIEAICDLADRYNALTYVDEVHAVGLYGARGG  227 (410)
T ss_pred             cCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEECCccccCcCCCCC
Confidence            45567778888999999888642  3689999999999999886    69999999999999999999996 4 344444


Q ss_pred             ccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhhc-cHHH
Q psy6547          92 LLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE-NMIE  164 (266)
Q Consensus        92 ~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~-~~~~  164 (266)
                      .+ ....++  .+|++  ++||+++.   ..||+++++++++.++....  ..+.+.+++.++++.++|+.+... ...+
T Consensus       228 g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~  303 (410)
T PRK13392        228 GI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERD  303 (410)
T ss_pred             ch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHH
Confidence            32 222232  34555  69999973   24788888888886654322  224445667888888999877653 3556


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-------CCCEEEE
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-------SNNIIRL  236 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~iR~  236 (266)
                      ++.++++++++.|++ ++....    .+.+.   ++.+.++.  ..+..+++++|+ ++||++.+.       +..++|+
T Consensus       304 ~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~i~~~~--~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRi  373 (410)
T PRK13392        304 AHQDRVAALKAKLNA-NGIPVM----PSPSH---IVPVMVGD--PTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRI  373 (410)
T ss_pred             HHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEeCC--HHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEE
Confidence            678888999998887 543222    23344   76666654  335678999986 679999853       3368999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++..+|++|++++++.|+++++++
T Consensus       374 s~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        374 TPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999987754

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.91  E-value=2e-23  Score=182.78  Aligned_cols=240  Identities=13%  Similarity=0.146  Sum_probs=164.2

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +++.+...+...+.+++.++.+       |++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|++||++|
T Consensus       125 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~i~l~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~i  201 (388)
T PRK07366        125 GYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV--LAQARLMVLSYPHNPTTAI-APLSFFQEAVAFCQQHDLVL  201 (388)
T ss_pred             CCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhh--cccceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCeEE
Confidence            3444555566778888888753       356666665  3357888888888999987 89999999999999999999


Q ss_pred             EEeccccCcCCcCc--ccccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHH
Q psy6547          78 IADEVQTGLGRTGK--LLAIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLA  150 (266)
Q Consensus        78 i~De~~~~~~~~g~--~~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  150 (266)
                      |+||+|..|...+.  .......    .....+.+|||.++ +| +|+||+++++++++.+........++..+..+.++
T Consensus       202 i~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a  280 (388)
T PRK07366        202 VHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGA  280 (388)
T ss_pred             EEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHH
Confidence            99999987743332  1111111    11233456999997 99 99999999999988776543333333333334444


Q ss_pred             HHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceec
Q psy6547         151 MTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTK  227 (266)
Q Consensus       151 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~  227 (266)
                      .+++.....  +...+.++++++.+.+.|++ .+   +....+..|+   |+|+.++.....+..+++++| .++||.+.
T Consensus       281 ~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~  353 (388)
T PRK07366        281 IAALTGPQATVQQTVQIFRQRRDAFINALHQ-IG---WPVPLPEATM---YVWAKLPEPWQGNSVEFCTQLVAQTGVAAS  353 (388)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeeE---EEEEECCcccCCCHHHHHHHHHHhCCEEEe
Confidence            555531111  34566677777778787776 43   2221344677   999998752112467788887 47799999


Q ss_pred             cC------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         228 PI------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       228 ~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      |+      +.+++|++..  .+++++++++++|.++
T Consensus       354 pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        354 PGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF  387 (388)
T ss_pred             CchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            85      2479999954  5799999999999875

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.91  E-value=2.2e-23  Score=182.40  Aligned_cols=235  Identities=14%  Similarity=0.178  Sum_probs=164.9

Q ss_pred             cCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +.....+.-++.+++.++.+       |++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|++||++||+
T Consensus       128 ~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~  204 (385)
T PRK09276        128 PVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDV--AKKAKLMFINYPNNPTGAV-ADLEFFEEVVDFAKKYDIIVCH  204 (385)
T ss_pred             cChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhc--cccceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEE
Confidence            33333345567777777642       577887777  3467888888778888987 8999999999999999999999


Q ss_pred             eccccCcCCcCcc-cc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKL-LA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        80 De~~~~~~~~g~~-~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      ||+|.++...+.. ..   ... .+....+.+|||.++ +| +|+||+++++++++.+.........+.+.+.+.++..+
T Consensus       205 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~  283 (385)
T PRK09276        205 DAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAA  283 (385)
T ss_pred             ecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence            9999776332321 11   111 123345667999997 89 99999999999888776543333444566677777777


Q ss_pred             HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-
Q psy6547         154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-  229 (266)
Q Consensus       154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-  229 (266)
                      ++....  +...++++++++.+.+.|++ .+   +.......|.   ++|+.+++  ..+..+++++|+ ++||.+.++ 
T Consensus       284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~~---~~~v~~~~--~~~~~~l~~~ll~~~gi~v~~g~  354 (385)
T PRK09276        284 LNGPQEVVEELRKIYQERRDILVEGLRK-LG---LEVEPPKATF---YVWAPVPK--GYTSAEFATLLLDKAGVVVTPGN  354 (385)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCcce---EEEEECCC--CCCHHHHHHHHHHhCCEEECCch
Confidence            653211  34566667777778888877 43   2221223455   68888876  557888999987 579999986 


Q ss_pred             -----CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 -----SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 -----~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                           +.+++|++..  .+++++.+++++|.+
T Consensus       355 ~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        355 GFGEYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             hhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence                 2479999954  688889888888864

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.91  E-value=1.9e-23  Score=182.66  Aligned_cols=236  Identities=14%  Similarity=0.173  Sum_probs=166.5

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      ++.....+.-++.+++.++.+       |++++++.+  .++++++++++++|++|.+ ++.+.+++|+++|++||++||
T Consensus       125 y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~--~~~~~~v~i~~P~NPtG~~-~~~~~~~~i~~~a~~~~~~ii  201 (383)
T TIGR03540       125 YPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDI--AKKAKLMFINYPNNPTGAV-APLKFFKELVEFAKEYNIIVC  201 (383)
T ss_pred             CcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhc--cccceEEEEeCCCCCcCcc-CCHHHHHHHHHHHHHcCEEEE
Confidence            333334445667778877753       577888877  3468888888778888877 899999999999999999999


Q ss_pred             EeccccCcCCcCc-cccc---cc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHH
Q psy6547          79 ADEVQTGLGRTGK-LLAI---HY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        79 ~De~~~~~~~~g~-~~~~---~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (266)
                      +||+|.++...+. ...+   .. ......+.+|||.++ +| +|+||+++++++.+.+.........+.+.+.+.++..
T Consensus       202 ~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~  280 (383)
T TIGR03540       202 HDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIA  280 (383)
T ss_pred             EecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            9999977643331 1111   11 123345567999997 89 9999999999988877654333344556667777777


Q ss_pred             HHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC
Q psy6547         153 ALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI  229 (266)
Q Consensus       153 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~  229 (266)
                      +++....  ++..+.++++++.+.+.|++ .+   +.......|.   ++|+.+++  +.+..+++.+|+ ++||.+.++
T Consensus       281 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---~~~~~l~~--~~~~~~~~~~ll~~~gi~v~~g  351 (383)
T TIGR03540       281 ALNGPQDVVKEIRKIYQRRRDLLLEALKK-IG---IDVEKPKATF---YVWVPVPE--GYTSAEFAARLLEETGVVVTPG  351 (383)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHh-CC---CEecCCCcce---EEEEECCC--CCCHHHHHHHHHHHCCEEEecc
Confidence            6653211  23566677777888888877 43   2221223466   78998876  567889999975 689999975


Q ss_pred             ------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 ------SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                            +.+++|++.+  .+++++++++++|.+
T Consensus       352 ~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       352 VGFGEYGEGYIRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             hhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence                  2478999954  678889888888864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK07505 hypothetical protein; Provisional

Probab=99.91  E-value=9.2e-23  Score=179.34  Aligned_cols=222  Identities=18%  Similarity=0.243  Sum_probs=153.7

Q ss_pred             CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc--cCcCCcCcccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ--TGLGRTGKLLA   94 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~--~~~~~~g~~~~   94 (266)
                      +.+++.+|++|+++++++++.+ ...+++++|+++ +|.+.    ++++|.++|++||+++|+||+|  ++++++|..+.
T Consensus       158 ~~~v~~~~~~d~~~l~~~~~~~-~~~~vl~~p~~~-~G~~~----~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~  231 (402)
T PRK07505        158 ETEVETIDHNDLDALEDICKTN-KTVAYVADGVYS-MGGIA----PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYV  231 (402)
T ss_pred             CCeEEEeCCCCHHHHHHHHhcC-CCEEEEEecccc-cCCcC----CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchH
Confidence            3589999999999999998433 456777887765 46554    5899999999999999999999  45777776555


Q ss_pred             cccCCC-CcCee----eecccccCCchhhhhhee-cHHhhhccCCCCCCCCCCC--cHHHHHHHHHHHHHHhhccHH---
Q psy6547          95 IHYEDV-RPDIV----ILGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGG--NPLACKLAMTALDVILEENMI---  163 (266)
Q Consensus        95 ~~~~~~-~~d~~----~~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~---  163 (266)
                      ....+. .+|.+    ++||+++++   .|+++. ++++.+.+....+..++++  ++++++++.++++....+.+.   
T Consensus       232 ~~~~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~  308 (402)
T PRK07505        232 RSELDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQ  308 (402)
T ss_pred             HHHcCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHH
Confidence            555565 55543    699999854   366654 6777777765445555544  457888888888866554433   


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEE
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRL  236 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~  236 (266)
                      ++++++.+.+.+.+..        . ..+.+.  ++.++.+.+  ..++.+++++|.++||++++.       +.+++|+
T Consensus       309 ~~l~~~~~~~~~~~~~--------~-~~g~~~--~i~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi  375 (402)
T PRK07505        309 QKLQNNIALFDSLIPT--------E-QSGSFL--PIRLIYIGD--EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRI  375 (402)
T ss_pred             HHHHHHHHHHHHHHHh--------c-CCCCCC--CEEEEEeCC--HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEE
Confidence            2232222222211111        1 223333  233444433  235788999999999999864       2368999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++++.+|++++++++++|++++++
T Consensus       376 ~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        376 MFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             ecCccCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998765

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.91  E-value=3e-23  Score=182.17  Aligned_cols=235  Identities=14%  Similarity=0.044  Sum_probs=164.5

Q ss_pred             cCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +.+...+..++.+++.+|.       .|++++++.+.  +++++++++.++|++|.+ ++.+.+++|.++|++|+++||+
T Consensus       128 ~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~--~~~k~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~  204 (396)
T PRK09147        128 QIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW--ARTQLLFVCSPGNPTGAV-LPLDDWKKLFALSDRYGFVIAS  204 (396)
T ss_pred             cchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh--hccEEEEEcCCCCCcCcc-CCHHHHHHHHHHHHHcCeEEEe
Confidence            3333445567888888874       25788887773  367888887778888887 9999999999999999999999


Q ss_pred             eccccCcCCcCc--ccc-cc--------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHH
Q psy6547          80 DEVQTGLGRTGK--LLA-IH--------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC  147 (266)
Q Consensus        80 De~~~~~~~~g~--~~~-~~--------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      ||+|..+...+.  ... ..        .++....+.+|||.++ +| +|+||+++++++++.+.......+++.+++.+
T Consensus       205 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q  283 (396)
T PRK09147        205 DECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQ  283 (396)
T ss_pred             eccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHH
Confidence            999987633231  111 10        1122344555999886 88 99999999999888776544444566777787


Q ss_pred             HHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCce
Q psy6547         148 KLAMTALDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLV  225 (266)
Q Consensus       148 ~a~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~  225 (266)
                      .++.+++..-. -.+.++.++++++.+.+.|++ .    +....+..|.   ++|++++.    +..+++++|+ ++||.
T Consensus       284 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~----~~~~~p~~g~---f~~~~~~~----~~~~~~~~ll~~~gv~  351 (396)
T PRK09147        284 AASIAAWNDEAHVRENRALYREKFDAVTPILAP-V----LDVQLPDAGF---YLWAKVPG----DDTEFARRLYADYNVT  351 (396)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-h----cCCCCCCeeE---EEEEECCC----CHHHHHHHHHHhCCEE
Confidence            77766653110 022445556666666666655 2    2221334677   99999873    4577888886 67999


Q ss_pred             eccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         226 TKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       226 ~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +.|+.            .+++|++..  .+++++++++++|.++++
T Consensus       352 v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        352 VLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR  395 (396)
T ss_pred             EeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence            98752            478999944  578999999999998763

>PRK09082 methionine aminotransferase; Validated

Probab=99.91  E-value=2.1e-23  Score=182.48  Aligned_cols=236  Identities=14%  Similarity=0.166  Sum_probs=168.5

Q ss_pred             CcccccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           8 TSYNEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      .....+...+.+++.++.+      |++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|++||+++|+||
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De  203 (386)
T PRK09082        127 SYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAI--SPRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDE  203 (386)
T ss_pred             hhHHHHHHcCCEEEEEecCcccccCCHHHHHHhc--CccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEeh
Confidence            3333345567788888763      678999988  3467888888788889987 899999999999999999999999


Q ss_pred             cccCcCCcCc-cccc-ccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGK-LLAI-HYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        82 ~~~~~~~~g~-~~~~-~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      +|.++...+. ..+. ...   +....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++...++
T Consensus       204 ~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~  282 (386)
T PRK09082        204 VYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLR  282 (386)
T ss_pred             hhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHh
Confidence            9976533222 1111 111   22344455999997 89 9999999999998887765555667778888887776664


Q ss_pred             HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccCC--
Q psy6547         156 VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPIS--  230 (266)
Q Consensus       156 ~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~--  230 (266)
                      ....  +.+++.++++++.+.+.|++ .+   +.......|.   ++|+.+++..+.+..+++++| .++||.+.|+.  
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f  355 (386)
T PRK09082        283 AEPEHYLELPAFYQAKRDRFRAALAN-SR---FKLLPCEGTY---FQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVF  355 (386)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCeeE---EEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHh
Confidence            2111  23556667778888888776 33   2221234466   788888742135678899987 57799998752  


Q ss_pred             ------CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         231 ------NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       231 ------~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                            .+++|++..  .+++++++++++|++
T Consensus       356 ~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~  385 (386)
T PRK09082        356 YADPFPHRLVRLCFA--KQEETLDAAAERLCQ  385 (386)
T ss_pred             CCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence                  368999954  589999999999874

>PRK07179 hypothetical protein; Provisional

Probab=99.91  E-value=3.2e-22  Score=176.18  Aligned_cols=227  Identities=17%  Similarity=0.192  Sum_probs=166.8

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKL   92 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~   92 (266)
                      ..+.+++.++++|+++|+++++++ ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.  ++..|.+
T Consensus       157 ~~g~~~~~~~~~d~~~l~~~l~~~-~~~lV~v~~v~n~tG~i~----pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g  231 (407)
T PRK07179        157 AAGAQAHPFRHNDVDHLRRQIERH-GPGIIVVDSVYSTTGTIA----PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAG  231 (407)
T ss_pred             HCCCeEEEecCCCHHHHHHHHHhc-CCeEEEECCCCCCCCccc----cHHHHHHHHHHcCCEEEEECcccccCcCCCCCc
Confidence            345567888889999999999542 468899999999999987    689999999999999999999963  2334432


Q ss_pred             cccccCCC--CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhhc-cHHHH
Q psy6547          93 LAIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIEN  165 (266)
Q Consensus        93 ~~~~~~~~--~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~-~~~~~  165 (266)
                      + ...+++  .+|+++  +||++++   ++|++++++++.+.+......  .+.+.++..++++.++++.+... +.+++
T Consensus       232 ~-~~~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~  307 (407)
T PRK07179        232 L-VAELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRAR  307 (407)
T ss_pred             h-HHhcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence            2 233443  246644  7899974   589999998887666422111  12222344555666777777654 47889


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC---CCCEEEEec
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSP  238 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~---~~~~iR~~~  238 (266)
                      ++++++++++.|++ ++..     ..+.+.   ++++.++.  ..+...+.+.|.++||.+.    |.   ..+++|+++
T Consensus       308 l~~~~~~l~~~L~~-~g~~-----v~~~~~---i~~l~~~~--~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~  376 (407)
T PRK07179        308 LHANARFLREGLSE-LGYN-----IRSESQ---IIALETGS--ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSL  376 (407)
T ss_pred             HHHHHHHHHHHHHH-cCCC-----CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEE
Confidence            99999999999988 5422     223455   88888755  3356778899999999743    32   257999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +..+|++|+++++++|++++++.
T Consensus       377 ~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        377 NADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.91  E-value=4.1e-23  Score=178.44  Aligned_cols=237  Identities=13%  Similarity=0.091  Sum_probs=166.0

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +++........++.+++.++.+       |++++++++.  ++++++++++++|++|.+ ++.+.+++|.++|++||+++
T Consensus        96 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~i  172 (350)
T TIGR03537        96 GYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL--EETKIVWINYPHNPTGAT-APRSYLKETIAMCREHGIIL  172 (350)
T ss_pred             CCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh--hccEEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHcCcEE
Confidence            3444444556677888887652       6889998883  367888888888888977 89999999999999999999


Q ss_pred             EEeccccCcCCcCccccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKLLAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        78 i~De~~~~~~~~g~~~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      |+||+|..+...+.......  .+....+.++||.++ +| +|+||+++++++.+.+.........+.+++.+.++.+++
T Consensus       173 i~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  251 (350)
T TIGR03537       173 CSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAW  251 (350)
T ss_pred             EEeccccccccCCCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence            99999976532222211111  122334445999997 88 999999999988887775433344455556666666555


Q ss_pred             HHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547         155 DVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       155 ~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      .... ....+++++++.+.+.+.|++ .+   +....+..|.   ++|+.++.  ..++.++++.|.++||.+.++    
T Consensus       252 ~~~~~~~~~r~~l~~~~~~~~~~l~~-~g---~~~~~~~g~~---~~~~~~~~--~~~~~~l~~~L~~~gv~v~~g~~f~  322 (350)
T TIGR03537       252 SDDNHVLERRKIFKRKRDLFIEFFNK-VG---LEYLYPDATF---YLWVKVPS--GIDAKDYALRLLENGIVVAPGENFG  322 (350)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeEE---EEEEECCC--CCCHHHHHHHHHHCCEEEcCchhhC
Confidence            3211 123456666777777777766 33   2221223466   78888876  456789999999999999874    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                        ..+++|++.  ..+++++++++++|.+
T Consensus       323 ~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       323 SGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             CCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence              257899995  3688999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.91  E-value=5.7e-23  Score=180.03  Aligned_cols=241  Identities=16%  Similarity=0.149  Sum_probs=172.1

Q ss_pred             cccCCCCCCceeecC------CCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          11 NEFGPHMPGYNIIPY------NDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~------~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ..+..++.+++.++.      .|++++++++++. +++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|
T Consensus       130 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~D~~y  208 (391)
T PRK07309        130 PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVT-YSREQIKALADVLKKYDIFVISDEVY  208 (391)
T ss_pred             HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEccc
Confidence            334556777777764      2689999998653 368899888778888877 89999999999999999999999999


Q ss_pred             cCcCCcCcc-ccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-
Q psy6547          84 TGLGRTGKL-LAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-  158 (266)
Q Consensus        84 ~~~~~~g~~-~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-  158 (266)
                      .++...+.. .....  .+....+.++||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++... 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  287 (391)
T PRK07309        209 SELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD  287 (391)
T ss_pred             cceeeCCCCCCCHHHhccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh
Confidence            876433321 12111  122334455999998 99 9999999999998887754344445677788888877775421 


Q ss_pred             -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547         159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S  230 (266)
Q Consensus       159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~  230 (266)
                       .....++++++++.+.+.|++ .+   +....+..|.   ++|+.++.....+..++++++ .++||.+.|+      +
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~p~gg~---~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~  360 (391)
T PRK07309        288 DALPMKKEYIKRRDYIIEKMTD-LG---FKIIKPDGAF---YIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYG  360 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeeE---EEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC
Confidence             123456677777788888776 33   2221233456   778777652123567888775 5789999876      2


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+++|++.+  .+.+++++++++|.++++++.
T Consensus       361 ~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~  390 (391)
T PRK07309        361 EGYVRLSYA--ASMETIKEAMKRLKEYMEEHA  390 (391)
T ss_pred             CCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence            579999955  578999999999999987753

>PRK08068 transaminase; Reviewed

Probab=99.91  E-value=4.4e-23  Score=180.66  Aligned_cols=233  Identities=13%  Similarity=0.154  Sum_probs=163.0

Q ss_pred             cccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           9 SYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ....+...+.+++.++.+       |++++++.+.  .++++++++.++|++|.+ ++.+.+++|.++|++||++||+||
T Consensus       131 ~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~P~NPTG~~-~s~~~~~~l~~la~~~~~~ii~De  207 (389)
T PRK08068        131 YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA--EKAKLMYLNYPNNPTGAV-ATKAFFEETVAFAKKHNIGVVHDF  207 (389)
T ss_pred             hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc--ccceEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeh
Confidence            333445677788888753       4678887773  357888877668888887 999999999999999999999999


Q ss_pred             cccCcCCcCc-ccc-cccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGK-LLA-IHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        82 ~~~~~~~~g~-~~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      +|..+...+. ..+ ....   +....+.+|||.++ +| +|+||+++++++++.+.........+.+++.+.++..++.
T Consensus       208 ay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~  286 (389)
T PRK08068        208 AYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALL  286 (389)
T ss_pred             hhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHh
Confidence            9977644432 111 1111   22344556999997 99 9999999999988877654333333444455666665553


Q ss_pred             HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC---
Q psy6547         156 VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI---  229 (266)
Q Consensus       156 ~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~---  229 (266)
                      ....  +.+.+.++++++.+.+.|++ .+.   .......|+   ++|+.++.  ..++.+++++|++ +||.+.|+   
T Consensus       287 ~~~~~~~~~~~~~~~~r~~~~~~L~~-~g~---~~~~~~g~~---~~~v~~~~--~~~~~~~~~~l~~~~gi~v~pg~~f  357 (389)
T PRK08068        287 SDQSCVAELVARYESRRNAFISACRE-IGW---EVDAPKGSF---FAWMPVPK--GYTSEQFADLLLEKAHVAVAPGNGF  357 (389)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH-CCC---cccCCCeeE---EEEEECCC--CCCHHHHHHHHHHhCCEEEecchHh
Confidence            2111  34567777788888888877 442   221223456   67888876  4578899999986 69999875   


Q ss_pred             ---CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 ---SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 ---~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                         +.+++|++..  .+++.+.+++++|.+
T Consensus       358 ~~~~~~~iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        358 GEHGEGYVRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             CccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence               2579999964  577888888888765

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.91  E-value=6.1e-23  Score=180.07  Aligned_cols=229  Identities=15%  Similarity=0.168  Sum_probs=163.9

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +...+.+++.++.       .|++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|+++|++||+||+|..
T Consensus       138 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~i~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~  214 (394)
T PRK05942        138 PLIAGAQIYPIILKPENDWLIDLSSIPEEV--AQQAKILYFNYPSNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAE  214 (394)
T ss_pred             HHHcCCEEEEeecCCccCCccCHHHHHHhc--cccceEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence            3456677777764       2688898888  3478999988778889977 9999999999999999999999999977


Q ss_pred             cCCcCcc-cc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          86 LGRTGKL-LA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        86 ~~~~g~~-~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      +...+.. .+   +.. .+....+.+|||.++ +| +|+||+++++++.+.+........++.+.+++.++..+++..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~  293 (394)
T PRK05942        215 LAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDS  293 (394)
T ss_pred             hccCCCCCCChhhCCCccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHH
Confidence            6433321 11   111 123345566999997 89 99999999999988887544444566777788888888864322


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S  230 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~  230 (266)
                        ++..++++++.+.+.+.|++ .+   +.......|.   ++|+.++.  +.+..+++.++ .++||.+.++      +
T Consensus       294 ~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---f~~~~~~~--~~~~~~~~~~~l~~~gV~v~~g~~f~~~~  364 (394)
T PRK05942        294 YLQQVQERYRTRRDFLIQGLGE-LG---WNIPPTKATM---YLWVPCPV--GMGSTDFALNVLQKTGVVVTPGNAFGEGG  364 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeee---EEEEECCC--CCCHHHHHHHHHHHCCEEEeCChhhCcCC
Confidence              34567777778888888876 43   2221224566   88898876  45667777765 4789999875      2


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      .+++|++..  .+.+.+.+++++|.+
T Consensus       365 ~~~iRis~~--~~~~~l~~~l~~l~~  388 (394)
T PRK05942        365 EGYVRISLI--ADCDRLGEALDRLKQ  388 (394)
T ss_pred             CCeEEEEec--CCHHHHHHHHHHHHH
Confidence            579999964  456667777776654

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.91  E-value=1.4e-22  Score=177.92  Aligned_cols=237  Identities=18%  Similarity=0.244  Sum_probs=169.9

Q ss_pred             CcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547           8 TSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      .....+...+.+++.++++|++++++.+++    ..++++++++++++++|...    ++++|.++|++||++||+||+|
T Consensus       138 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~----~~~~l~~la~~~~~~li~De~~  213 (397)
T PRK06939        138 SIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA----PLPEICDLADKYDALVMVDDSH  213 (397)
T ss_pred             HHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC----CHHHHHHHHHHhCCEEEEECcc
Confidence            333344556677888888999999999854    12678888888898888765    8999999999999999999999


Q ss_pred             c-Cc-CCcCcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHH
Q psy6547          84 T-GL-GRTGKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALD  155 (266)
Q Consensus        84 ~-~~-~~~g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~  155 (266)
                      + ++ +..|.. .....++  .++++  ++||+++ | +|+||+++++++++.+......  ...+.++..++++.++++
T Consensus       214 ~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~-g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~  290 (397)
T PRK06939        214 AVGFVGENGRG-TVEHFGVMDRVDIITGTLGKALG-G-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLE  290 (397)
T ss_pred             cccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhC-c-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHH
Confidence            4 32 222321 1122232  34555  6999995 4 5899999999888877542221  122234555666777777


Q ss_pred             HHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----
Q psy6547         156 VILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----  229 (266)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----  229 (266)
                      .+.. ++++++++++++++++.|++ ++...    ..+.+.   ++++.++.  ..+..+|+++|+++||.+.+.     
T Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~gI~v~~~~~~~~  360 (397)
T PRK06939        291 LLEESDELRDRLWENARYFREGMTA-AGFTL----GPGEHP---IIPVMLGD--AKLAQEFADRLLEEGVYVIGFSFPVV  360 (397)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHH-cCCCc----CCCCCC---EEEEEECC--HHHHHHHHHHHHHCCceEeeeCCCCC
Confidence            7654 46788899999999999987 44222    123344   66555544  346788999999999988742     


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                        +.+++|++++..++++++++++++|+++++++
T Consensus       361 ~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        361 PKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence              23689999998899999999999999998765

>PRK09148 aminotransferase; Validated

Probab=99.90  E-value=6.3e-23  Score=180.47  Aligned_cols=247  Identities=16%  Similarity=0.178  Sum_probs=175.4

Q ss_pred             CCcCcccccCCCCCCceeecCC----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +++.+...+...+.+++.++..    .++++++.+++. +++++++++.++|++|.+ ++.+.+++|.++|++||++||+
T Consensus       125 ~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~  203 (405)
T PRK09148        125 SYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYV-ADLDFYKDVVAFAKKHDIIILS  203 (405)
T ss_pred             CCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEE
Confidence            3444444556667788888743    355677776542 467888888778889977 8999999999999999999999


Q ss_pred             eccccCcCCcCccc-ccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLL-AIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        80 De~~~~~~~~g~~~-~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      ||+|.+|...+..+ .....    +....+.+|||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+
T Consensus       204 De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~  282 (405)
T PRK09148        204 DLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAA  282 (405)
T ss_pred             eccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence            99998763323211 11111    22234556999999 99 99999999999988887554455666778888888777


Q ss_pred             HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC
Q psy6547         154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI  229 (266)
Q Consensus       154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~  229 (266)
                      |+....  +.+.+.++++++.+.+.|++ .+   +....+..|+   |+|+.++... ..+..+++++|+ ++||.+.|+
T Consensus       283 L~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg  355 (405)
T PRK09148        283 LNGPQDCIAEMRELYKKRRDVLVESFGR-AG---WDIPPPAASM---FAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPG  355 (405)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHH-cC---CccCCCCeeE---EEEEECCCccCCCCHHHHHHHHHHhCCEEEeCc
Confidence            753211  23556677777777777776 43   2221234577   8999887521 124578888876 789999985


Q ss_pred             ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         230 ------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                            +.+++|++..  .+.+++++++++|.++++++.
T Consensus       356 ~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~  392 (405)
T PRK09148        356 VGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD  392 (405)
T ss_pred             hhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence                  2479999964  689999999999999987753

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=7.1e-23  Score=175.62  Aligned_cols=231  Identities=12%  Similarity=0.074  Sum_probs=158.1

Q ss_pred             cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      +.....+...+.+++.+|.++.+...+.+++. ++++++++.++|++|.+ ++.+.+++|.++|+++|++||+||+|.+|
T Consensus        90 ~~y~~~~~~~G~~v~~vp~~~~~~~~~~l~~~-~~k~v~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~  167 (332)
T PRK06425         90 NEYKGYAFTHGIRISALPFNLINNNPEILNNY-NFDLIFIVSPDNPLGNL-ISRDSLLTISEICRKKGALLFIDEAFIDF  167 (332)
T ss_pred             HHHHHHHHHcCCeEEEEeCCcccCcHHHHhhc-CCCEEEEeCCCCCcCCc-cCHHHHHHHHHHHHHcCCEEEEecchhcc
Confidence            33344566778888888864211113344332 57888877788889987 89999999999999999999999999887


Q ss_pred             CCcCccccc---ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hcc
Q psy6547          87 GRTGKLLAI---HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EEN  161 (266)
Q Consensus        87 ~~~g~~~~~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~  161 (266)
                      ...+.....   ...+....+-+|||.++ +| +|+||+++++++++.+...  ...++.+.+++.+.. ....-. .+.
T Consensus       168 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~  243 (332)
T PRK06425        168 VPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKH  243 (332)
T ss_pred             ccccchhHHHHhccCCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHH
Confidence            433321111   11223344455999999 99 9999999999998887743  333444444433222 111100 124


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCEEE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNIIR  235 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~iR  235 (266)
                      ..+.++++++.+.+.|++ ++....   ..+.|+   |+|+.++     ++.+++++|.++||.++++.      .+++|
T Consensus       244 ~~~~~~~~r~~l~~~L~~-~g~~~~---~~~~g~---f~~~~~~-----~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iR  311 (332)
T PRK06425        244 SLDIMENERSYLINNLEA-MGFRAA---GDPSAN---FITFMIP-----DAHDFYSYLLKNGILVRLLDDYECLGEQYIR  311 (332)
T ss_pred             HHHHHHHHHHHHHHHHHH-CCCEEC---CCCCce---EEEEEcC-----CHHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence            567777888888888887 432111   124577   8999875     36789999999999998752      36999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++   ..++++++++++.|++++
T Consensus       312 is---~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        312 IA---IRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             EE---eCCHHHHHHHHHHHHHHh
Confidence            99   447899999999998765

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.90  E-value=3.8e-23  Score=181.78  Aligned_cols=241  Identities=16%  Similarity=0.183  Sum_probs=170.1

Q ss_pred             cccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ..+..++.+++.++.+       |++++++.+.  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|
T Consensus       145 ~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l~nP~NPTG~v-~s~e~l~~l~~la~~~~~~iI~DEaY  221 (410)
T PRK06290        145 THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK--EKAKLLYLNYPNNPTGAV-ATKEFYEEVVDFAKENNIIVVQDAAY  221 (410)
T ss_pred             HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc--ccceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEEecch
Confidence            3445567788887753       6788888873  367888888678888987 89999999999999999999999999


Q ss_pred             cCcCCcCccccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          84 TGLGRTGKLLAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        84 ~~~~~~g~~~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      .++...+...++ ..   .+....+.+|||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++..+
T Consensus       222 ~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~  300 (410)
T PRK06290        222 AALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPE  300 (410)
T ss_pred             hhceeCCCCcChhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcH
Confidence            876332321111 11   123345566999997 89 9999999999998887654444455556677777777775421


Q ss_pred             -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCCc-eeccCC-
Q psy6547         159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAGL-VTKPIS-  230 (266)
Q Consensus       159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi-~~~~~~-  230 (266)
                       .+...++++++++.+.+.|++ .+   +.......|.   ++|+.++...     ..++.+++++|+++|+ .+.|+. 
T Consensus       301 ~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~g~f---~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~  373 (410)
T PRK06290        301 ITEKIREKYSRRLDKLVKILNE-VG---FKAEMPGGTF---YLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDD  373 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CC---CeecCCCeee---EEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcc
Confidence             134667777888888888877 43   2221223456   7788887521     1267889999998865 444542 


Q ss_pred             -CCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 -NNIIRLSPA-LNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 -~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       ++++|++.. ...++++.+++++.|.+.+.++.
T Consensus       374 ~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        374 AGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             ccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence             368999953 23588899999999999987753

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=7.4e-23  Score=178.31  Aligned_cols=233  Identities=15%  Similarity=0.096  Sum_probs=162.4

Q ss_pred             ccccCCCCCCceeecC------CCHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          10 YNEFGPHMPGYNIIPY------NDVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~------~d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ...+...+.+++.++.      .|+++|++.+++  ..+++++++++++|++|.+ ++.+.++++.++|  ++++||+||
T Consensus       130 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~-~s~~~l~~l~~~~--~~~~iI~De  206 (374)
T PRK02610        130 GILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNP-LTAAELEWLRSLP--EDILVVIDE  206 (374)
T ss_pred             HHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCC-CCHHHHHHHHhcc--CCcEEEEec
Confidence            3344556777777763      268999998854  1468999887788989987 8999999999887  499999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      +|.+|.................+.+|||.++ +| +|+||+++++++.+.+....  ..++.+.+.+.++..+++..+. 
T Consensus       207 ~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~  283 (374)
T PRK02610        207 AYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQEL  283 (374)
T ss_pred             cccccCccchHHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHH
Confidence            9987742211111111112233556999996 99 99999999999888876533  3455678888888777754321 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      .+..++..+.++.+.+.|+. +.  .+.. .+..|+   |+|+.++.  +.+..++++.|.++||.+.+. .+++|++..
T Consensus       284 ~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~p~~g~---f~~~~l~~--~~~~~~~~~~l~~~gi~v~~~-~~~lRls~~  353 (374)
T PRK02610        284 LAAIPEILQERDRLYQALQE-LP--QLRV-WPSAAN---FLYLRLSQ--DAALAALHQALKAQGTLVRHT-GGGLRITIG  353 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CC--CcEe-CCCcce---EEEEeCCC--CCCHHHHHHHHHHCCEEEEeC-CCeEEEeCC
Confidence            11122223334555566655 32  2222 244577   99998876  457889999999999999875 679999943


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                         +.+++++++++|.++++++
T Consensus       354 ---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        354 ---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             ---CHHHHHHHHHHHHHHHhhc
Confidence               4677899999999988754

>PRK08912 hypothetical protein; Provisional

Probab=99.90  E-value=9.3e-23  Score=178.51  Aligned_cols=242  Identities=17%  Similarity=0.176  Sum_probs=170.8

Q ss_pred             CcCcccccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      ++.....+..++.+++.++.+      |++++++.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+
T Consensus       121 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~s~~~~~~i~~~~~~~~~~ii~  197 (387)
T PRK08912        121 YDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAF--SPRTKAVLLNNPLNPAGKV-FPREELALLAEFCQRHDAVAIC  197 (387)
T ss_pred             chhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHh--CccceEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCeEEEE
Confidence            344444456667777777642      578999888  3467888888778888877 8999999999999999999999


Q ss_pred             eccccCcCCcCccc-c-ccc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLL-A-IHY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        80 De~~~~~~~~g~~~-~-~~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      ||+|.++...+..+ . ...   .+....+.++||.++ +| +|+||+++++++++.+........++.++..+.++..+
T Consensus       198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~  276 (387)
T PRK08912        198 DEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYG  276 (387)
T ss_pred             hhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence            99997653333211 1 111   123344555999999 99 99999999999888876544444566666677777666


Q ss_pred             HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC
Q psy6547         154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI  229 (266)
Q Consensus       154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~  229 (266)
                      +.....  +++.++++++++.+.+.|++ .+   +.......|.   ++|+.++... ..+..+++++|+ ++||.+.|+
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~g~~---~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg  349 (387)
T PRK08912        277 LGKPDDYFEGMRADLARSRDRLAAGLRR-IG---FPVLPSQGTY---FLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPV  349 (387)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCcce---EEEecccccCCCCCHHHHHHHHHhcCCEEEecc
Confidence            642111  34667778888888888887 43   2221223456   7888886411 236788999986 579999875


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                              ..+++|++..  .+++++++++++|.+++++
T Consensus       350 ~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        350 SAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR  386 (387)
T ss_pred             hhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence                    1479999955  5789999999999988764

>PRK08175 aminotransferase; Validated

Probab=99.90  E-value=1.6e-22  Score=177.54  Aligned_cols=240  Identities=15%  Similarity=0.188  Sum_probs=171.4

Q ss_pred             ccccCCCCCCceeecCC----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          10 YNEFGPHMPGYNIIPYN----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ...+.-.+.+++.++.+    +.+++++++++. +++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.
T Consensus       129 ~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~ii~De~y~  207 (395)
T PRK08175        129 IYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQC-VELEFFEKVVALAKRYDVLVVHDLAYA  207 (395)
T ss_pred             HHHHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCcEEEEecchH
Confidence            34445567777877754    478888888643 468888888778888877 999999999999999999999999997


Q ss_pred             CcCCcCcc-ccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          85 GLGRTGKL-LAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        85 ~~~~~g~~-~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      ++...+.. ... ..   .+....+.++||.++ +| +|+||+++++++++.+........++.+.+.+.++..+++...
T Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  286 (395)
T PRK08175        208 DIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ  286 (395)
T ss_pred             hhccCCCCCcchhcCCCcccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcH
Confidence            76333321 111 11   122234456999997 89 9999999999998877654444455666667777777775321


Q ss_pred             h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC-----
Q psy6547         159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI-----  229 (266)
Q Consensus       159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~-----  229 (266)
                      .  +.+.+.++++.+++.+.|++ ++.   ....+..|+   ++|+.+++.. ..++.+++.+|+ ++||.+.|+     
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~L~~-~~~---~~~~p~~g~---~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~  359 (395)
T PRK08175        287 QCVRDIAEQYKRRRDVLVKGLHE-AGW---MVEMPKASM---YVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD  359 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCC---cccCCCEEE---EEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc
Confidence            1  23566667777788888877 432   221233577   9999998621 124688988876 679999886     


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       +.+++|++..  .+++.+.+++++|.+++.+
T Consensus       360 ~~~~~lRis~~--~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        360 YGDTHVRFALI--ENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence             2468999954  6899999999999998865

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.90  E-value=2.8e-22  Score=175.24  Aligned_cols=227  Identities=23%  Similarity=0.258  Sum_probs=168.2

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcC
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTG   90 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g   90 (266)
                      ...+.+++.++.+|++++++.++.. +++++++++++++++|...    ++++|+++|++||+++|+||+|+.  ++..|
T Consensus       141 ~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~----~l~~i~~ia~~~~~~li~De~~~~g~~~~~g  216 (385)
T PRK05958        141 RLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLA----PLAELVALARRHGAWLLVDEAHGTGVLGPQG  216 (385)
T ss_pred             HhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcC----CHHHHHHHHHHhCCEEEEECcccccccCCCC
Confidence            3456678888889999999999653 2467888888988888775    799999999999999999999943  33333


Q ss_pred             ccccc-ccCCCCcC---eeeecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhc-cHH
Q psy6547          91 KLLAI-HYEDVRPD---IVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEE-NMI  163 (266)
Q Consensus        91 ~~~~~-~~~~~~~d---~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~  163 (266)
                      ..+.. ......++   +.++||++++   +.||+++++++.+.+...  .+..+.+.+++.++++.++++.++.. ++.
T Consensus       217 ~~~~~~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~  293 (385)
T PRK05958        217 RGLAAEAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERR  293 (385)
T ss_pred             CchHHhhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence            32211 11122344   5669999973   347888888887765422  22333456777777888888877663 678


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEE
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRL  236 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~  236 (266)
                      +++.++++++.+.|++ ++.   .. ..+.|.   ++++.+++  ..+..+++++|+++||.+.+.       +.+++|+
T Consensus       294 ~~~~~~~~~l~~~L~~-~~~---~~-~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRi  363 (385)
T PRK05958        294 ERLAALIARLRAGLRA-LGF---QL-MDSQSA---IQPLIVGD--NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRI  363 (385)
T ss_pred             HHHHHHHHHHHHHHHH-cCC---Cc-CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEE
Confidence            8999999999999987 442   22 234566   88888765  446788999999999999752       2468999


Q ss_pred             eccCCCCHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINT  257 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +++..++++++++++++|+++
T Consensus       364 s~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        364 TLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             EecCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999875

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.90  E-value=3.4e-22  Score=175.31  Aligned_cols=229  Identities=20%  Similarity=0.266  Sum_probs=164.5

Q ss_pred             CCCCceeecCCCHHHHHHHHhcC--C--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc-CCc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSN--P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~--~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~-~~~   89 (266)
                      .+.+.+.++++|++++++.+++.  +  ++++|++++++|++|.+.    ++++|+++|++||+++|+||+|. ++ +..
T Consensus       142 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~----~l~~i~~la~~~~~~li~De~~~~g~~~~~  217 (393)
T TIGR01822       142 CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA----PLDEICDLADKYDALVMVDECHATGFLGPT  217 (393)
T ss_pred             cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC----CHHHHHHHHHHcCCEEEEECCccccCcCCC
Confidence            34455667789999999999641  2  678999999999999886    79999999999999999999993 32 222


Q ss_pred             CcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCCCC--CCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          90 GKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        90 g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      |.. .....++  .+|++  ++||+++ | +++||+++++++.+.+.......  +.+.++..++++.++++.++. ++.
T Consensus       218 ~~~-~~~~~~~~~~~di~~~s~sK~l~-g-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  294 (393)
T TIGR01822       218 GRG-SHELCGVMGRVDIITGTLGKALG-G-ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNEL  294 (393)
T ss_pred             CCc-hHHhcCCCCCCeEEEEEChHHhh-C-CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHH
Confidence            221 1111222  34555  5999986 4 68999999998887765422212  222345556667788877644 457


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR  235 (266)
                      .++++++++++++.|++ .+....    .+.+.   ++.+.+++  ..++.++++.|.++||.+...       +...+|
T Consensus       295 ~~~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~i~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iR  364 (393)
T TIGR01822       295 RDRLWANTRYFRERMEA-AGFDIK----PADHP---IIPVMLYD--AVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIR  364 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEeCC--HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEE
Confidence            88999999999999987 432211    12233   67766654  346788999999999988631       235799


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++..+|++++++++++|++++++.
T Consensus       365 is~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       365 VQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.90  E-value=2.1e-22  Score=176.66  Aligned_cols=237  Identities=19%  Similarity=0.210  Sum_probs=168.0

Q ss_pred             cCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.-.+.+++.++.+       |++++++.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.+
T Consensus       132 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~  208 (393)
T PRK05764        132 VKLAGGVPVFVPTGEENGFKLTVEQLEAAI--TPKTKALILNSPSNPTGAV-YSPEELEAIADVAVEHDIWVLSDEIYEK  208 (393)
T ss_pred             HHHcCCEEEEEecCcccCCcCCHHHHHHhh--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeccccc
Confidence            34457777777763       578999988  3467888877778888877 8999999999999999999999999977


Q ss_pred             cCCcCcc-ccc-----ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          86 LGRTGKL-LAI-----HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        86 ~~~~g~~-~~~-----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +...+.. ...     +..+....+.++||.++ +| +|+||+++++++.+.+.........+.+++++.++..+++...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  287 (393)
T PRK05764        209 LVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQ  287 (393)
T ss_pred             eeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCCh
Confidence            6332321 111     11223344455999999 89 8999999999988887654444455678888888877775211


Q ss_pred             h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHHH-HCCceeccCC--
Q psy6547         159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMK-DAGLVTKPIS--  230 (266)
Q Consensus       159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~gi~~~~~~--  230 (266)
                      .  +.+.++++++.+.+++.|++ ..  .+.......|.   ++|+.++...   +.++.++.+.|. ++||.+.++.  
T Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f  361 (393)
T PRK05764        288 DEVEEMRQAFEERRDLMVDGLNE-IP--GLECPKPEGAF---YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAF  361 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-CC--CCcccCCCcce---EEEEecccccccccCCHHHHHHHHHHhCCEEEcccccc
Confidence            1  24566667777778888877 42  22221223456   7787776511   113578888876 5799998752  


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                        .+++|++.  .++++++++++++|.++++++
T Consensus       362 ~~~~~vRis~--~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        362 GAPGYVRLSY--ATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             CCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhh
Confidence              47999994  568999999999999988753

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.2e-22  Score=176.73  Aligned_cols=238  Identities=14%  Similarity=0.100  Sum_probs=164.9

Q ss_pred             cCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      |.+...+...+.+++.+|+.    |++++++.+. ..++++++++.++|++|.+ ++.+.++++.+.|+ +|++||+||+
T Consensus       119 ~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~-~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~~~~~-~~~~lI~DE~  195 (369)
T PRK08153        119 PTFNYHVAGFGGRLVTVPYRDDREDLDALLDAAR-RENAPLVYLANPDNPMGSW-HPAADIVAFIEALP-ETTLLVLDEA  195 (369)
T ss_pred             hHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhc-ccCCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEeCc
Confidence            33343444567788888853    4566655553 2367888876678888877 89999999999887 4999999999


Q ss_pred             ccCcCCcCccccccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547          83 QTGLGRTGKLLAIHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E  159 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~  159 (266)
                      |..|...|....+.. ......+.+|||.++ +| +|+||+++++++++.+....  .+++.+++++.++.++|+.-+ .
T Consensus       196 y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~  272 (369)
T PRK08153        196 YCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAG-ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYL  272 (369)
T ss_pred             hhhhcCcccchhhhhcCCCEEEEecchHhccCcc-hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHH
Confidence            988754443222211 111223455999998 99 99999999999888776432  346788999999988885211 1


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-cC---CCCEEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-PI---SNNIIR  235 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~---~~~~iR  235 (266)
                      +...+.++++++.+.+.|++ .+   +.. .+..+.   |+++.++.. ...+.++.++|.++||.++ |+   ..+++|
T Consensus       273 ~~~~~~~~~~r~~~~~~L~~-~g---~~~-~p~~~~---f~~~~~~~~-~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iR  343 (369)
T PRK08153        273 AEVVGKIAAARDRIAAIARA-NG---LTP-LPSATN---FVAIDCGRD-GAFARAVLDGLIARDIFVRMPGVAPLDRCIR  343 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CC---Ccc-CCCcCc---EEEEECCCC-cccHHHHHHHHHHCCeEEeeCCCCCCCCeEE
Confidence            23445555666666666665 33   222 334566   888877531 3457889999999999996 43   247999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         236 LSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++..   ++++++++++.|++++..+.
T Consensus       344 is~~---~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        344 VSCG---PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             EecC---CHHHHHHHHHHHHHHHHHhh
Confidence            9933   79999999999999987544

>PRK07777 aminotransferase; Validated

Probab=99.90  E-value=9.8e-23  Score=178.38  Aligned_cols=232  Identities=19%  Similarity=0.197  Sum_probs=163.6

Q ss_pred             CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      -.+.+++.++.        .|+++|++.+  .+++++|++++++|++|.+ ++.+.+++|.++|++||+++|+||+|.++
T Consensus       128 ~~g~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~  204 (387)
T PRK07777        128 MAGAHRVPVPLVPDGRGFALDLDALRAAV--TPRTRALIVNSPHNPTGTV-LTAAELAAIAELAVEHDLLVITDEVYEHL  204 (387)
T ss_pred             HCCCEEEEeecCCccCCCcCCHHHHHHhc--CcccEEEEEcCCCCCCCcc-CCHHHHHHHHHHHHhcCcEEEEeccchhc
Confidence            34555666553        3678898888  3467889988888888887 79999999999999999999999999876


Q ss_pred             CCcCc-cccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          87 GRTGK-LLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        87 ~~~g~-~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      ...+. ...+..    .+....+.++||.++ +| +|+||+++++++.+.+.......++..+.+.+.++..+++..+. 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  283 (387)
T PRK07777        205 VFDGARHLPLATLPGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAW  283 (387)
T ss_pred             ccCCCCcccHhhCCCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHH
Confidence            43332 111111    223344566999999 89 99999999998887776544444555566666666666642111 


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC-------
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS-------  230 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~-------  230 (266)
                       +.+.++++++++.+.+.|++ .+....   ....|.   ++|+.++.....++.+++++|+ ++||.+.|+.       
T Consensus       284 ~~~~~~~~~~~~~~l~~~L~~-~~~~~~---~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~  356 (387)
T PRK07777        284 VAALRDSLQAKRDRLAAGLAE-AGFEVH---DSAGTY---FLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPAD  356 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCcc---CCCcce---EEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCc
Confidence             24567778888888888887 432211   223456   7777765311236789999997 6799998752       


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        .+++|++..  .+++++++++++|.++..
T Consensus       357 ~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        357 AWNHLVRFAFC--KRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             CCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence              358999954  589999999999987653

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=5.7e-23  Score=178.26  Aligned_cols=229  Identities=13%  Similarity=0.091  Sum_probs=164.9

Q ss_pred             ccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          10 YNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+...+.+++.++.+    |+++|++.++  +++++++++.++|++|.+ ++.+.+++|+++|++++ ++|+||+|.+
T Consensus       119 ~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~--~~~~~v~i~~P~NPTG~~-~~~~~l~~l~~~~~~~~-~~iiDe~y~~  194 (366)
T PRK01533        119 RHHAIIEGCEVKEVALNNGVYDLDEISSVVD--NDTKIVWICNPNNPTGTY-VNDRKLTQFIEGISENT-LIVIDEAYYE  194 (366)
T ss_pred             HHHHHHcCCEEEEeecCCCCcCHHHHHHHhC--cCCcEEEEeCCCCCCCCC-cCHHHHHHHHHhCCCCC-EEEEEccHHH
Confidence            34445567777777753    6899999883  457788877788889987 89999999999998876 5677999977


Q ss_pred             cCCcCcc-c---ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          86 LGRTGKL-L---AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        86 ~~~~g~~-~---~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      |...+.. .   ..+..+....+.+|||.++ +| +|+||+++++++.+.+....  ..++.+.+++.++.++|+...- 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~  271 (366)
T PRK01533        195 YVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFI  271 (366)
T ss_pred             hhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHH
Confidence            6332211 1   1111223344455999999 99 99999999999888876532  4577899999999888853111 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      +.+.+.+++.++++.+.++. ++   +.. .++.|+   |+|+.+++     +.++.+.|+++||.+++. .+++|++  
T Consensus       272 ~~~~~~~~~~r~~~~~~l~~-~g---~~~-~~~~~n---f~~~~~~~-----~~~~~~~l~~~GI~Vr~~-~~~iRis--  335 (366)
T PRK01533        272 EEIVRVNTEGLRQYESFCKE-NE---IPF-YQSQTN---FIFLPVEN-----GGEIYEACAHAGFIIRPF-PNGVRIT--  335 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CC---Ccc-CCCcCc---EEEEeCCC-----HHHHHHHHHHCCcEEccC-CCceEEe--
Confidence            22344445555555555555 32   332 345677   99998743     467999999999999996 6889999  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         240 LNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       ..+.++++++++.|+++++...
T Consensus       336 -~~~~~~~~~l~~al~~~~~~~~  357 (366)
T PRK01533        336 -VGTREQNEGVISVLQQHFENKK  357 (366)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcc
Confidence             5588999999999999876643

>PLN02483 serine palmitoyltransferase

Probab=99.90  E-value=9.6e-22  Score=176.03  Aligned_cols=232  Identities=18%  Similarity=0.237  Sum_probs=168.2

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcC-----CC------EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSN-----PN------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~-----~~------~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ..-.+.+++.++++|++++++++++.     ++      ..+|++++++++.|.+.    ++++|.++|++||++||+||
T Consensus       202 ~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~----~l~~I~~la~~~~~~livDE  277 (489)
T PLN02483        202 ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC----KLPEIVAVCKKYKAYVYLDE  277 (489)
T ss_pred             HHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc----CHHHHHHHHHHcCCEEEEEC
Confidence            34467789999999999999888531     22      24777899999999887    99999999999999999999


Q ss_pred             cccC--cCCcCcccccccCCC---CcCee--eecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHH
Q psy6547          82 VQTG--LGRTGKLLAIHYEDV---RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMT  152 (266)
Q Consensus        82 ~~~~--~~~~g~~~~~~~~~~---~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~  152 (266)
                      +|+-  ++.+|.. ....+++   +.|++  ++||++++.   .||+++++++++.+........+  +.++..++++.+
T Consensus       278 a~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~---GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~a  353 (489)
T PLN02483        278 AHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGSC---GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVIS  353 (489)
T ss_pred             cCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhcccC---ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHH
Confidence            9952  3344432 1222232   23444  699999742   58899999999888754333323  345566666778


Q ss_pred             HHHHHhhc-------cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce
Q psy6547         153 ALDVILEE-------NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV  225 (266)
Q Consensus       153 ~l~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  225 (266)
                      +|+.+..+       +..++++++++++++.|++ ++......   .   .+|++++.+..  ..+..+++++|+++||.
T Consensus       354 aL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~-~G~~v~~~---~---~sp~~~l~l~~--~~~~~~~~~~Ll~~GI~  424 (489)
T PLN02483        354 AIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK-MGFEVLGD---N---DSPVMPIMLYN--PAKIPAFSRECLKQNVA  424 (489)
T ss_pred             HHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH-CCCcccCC---C---CCCEEEEEECC--HHHHHHHHHHHHHCCcE
Confidence            88766422       3567888899999999998 54321111   1   22478877765  34567899999999999


Q ss_pred             eccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         226 TKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       226 ~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.+.       ..+.+|++++..+|++++++++++|+++++.+
T Consensus       425 v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        425 VVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             EeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9842       23689999999999999999999999988765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2.2e-22  Score=174.99  Aligned_cols=227  Identities=15%  Similarity=0.090  Sum_probs=156.1

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++..     |+++++++++++ ++++++++.++|++|.+ ++.+.+++|.+.   ++++||+||+|++|.
T Consensus       129 ~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~---~~~~lI~DE~y~~~~  203 (368)
T PRK03317        129 ARGTHTEWVEGPRAADFTLDVDAAVAAIAEH-RPDVVFLTSPNNPTGTA-LPLDDVEAILDA---APGIVVVDEAYAEFR  203 (368)
T ss_pred             HHhcCCeeEEcccCCCCCCCHHHHHHHHhcc-CCCEEEEeCCCCCCCCC-CCHHHHHHHHHH---CCceEEEeCCchhhc
Confidence            34455666666532     689999998543 46777777778889988 555555555544   479999999999886


Q ss_pred             CcCcccccccCCCCcCee---eeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          88 RTGKLLAIHYEDVRPDIV---ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~---~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      +.|........+..++++   +|||.++ +| +|+||+++++++++.+....  .+++.+++++.++.++++..+. .+.
T Consensus       204 ~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~  280 (368)
T PRK03317        204 RSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLAS  280 (368)
T ss_pred             ccCCcCHHHHHHhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHH
Confidence            544332222223334555   6999998 89 99999999999998887533  4677889999998888875322 223


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-CCEEEEeccCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALN  241 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~~~  241 (266)
                      .+++.++++.+.+.|+. .+   +.. ..+.|.   ++.+....    +..++++.|+++||.+++.+ .+++|++.   
T Consensus       281 ~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~---  345 (368)
T PRK03317        281 VAALRAERDRVVAWLRE-LG---LRV-APSDAN---FVLFGRFA----DRHAVWQGLLDRGVLIRDVGIPGWLRVTI---  345 (368)
T ss_pred             HHHHHHHHHHHHHHHHH-CC---CEe-CCCCCc---EEEEeccC----CHHHHHHHHHHCCEEEEeCCCCCeEEEec---
Confidence            34455666666666665 32   222 223344   55442222    46789999999999998754 58999993   


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q psy6547         242 ITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+.++++++++.|+++++...
T Consensus       346 ~~~~~~~~~~~~l~~~~~~~~  366 (368)
T PRK03317        346 GTPEENDAFLAALAEVLATEL  366 (368)
T ss_pred             CCHHHHHHHHHHHHHHHHHhh
Confidence            378899999999999876543

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.90  E-value=9.5e-22  Score=172.03  Aligned_cols=228  Identities=17%  Similarity=0.229  Sum_probs=165.8

Q ss_pred             CCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGK   91 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~   91 (266)
                      .+.+++.+++.|++++++.+++.  +++++|+++++++++|.+.    ++++|.++|++||+++|+||+|+.  +++.|.
T Consensus       137 ~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~----~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~  212 (385)
T TIGR01825       137 TKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA----PLPEIVELAERYGAVTYVDDAHGSGVMGEAGR  212 (385)
T ss_pred             cCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc----CHHHHHHHHHHhCCEEEEECcccccCcCCCCC
Confidence            45566777888999999988653  3688999999999999876    789999999999999999999954  332232


Q ss_pred             cccccc----CCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC-C-CCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547          92 LLAIHY----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH-G-STYGGNPLACKLAMTALDVILE-ENMIE  164 (266)
Q Consensus        92 ~~~~~~----~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~  164 (266)
                      . ....    .+.+..+.++||++++   +.||+++++++++.+..... . .+...++..+.++.++++.+.. ++..+
T Consensus       213 ~-~~~~~~~~~~~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  288 (385)
T TIGR01825       213 G-TVHHFGLEDKVDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELME  288 (385)
T ss_pred             c-cHhhcCCCcCCcEEEEeccHHhhc---CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence            1 1111    2334445779999963   35788888888877753321 1 1223466778888888887644 45788


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-------CCCCEEEEe
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-------ISNNIIRLS  237 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~iR~~  237 (266)
                      ++.++++++.+.|++ ++....    ...+.   ++.+.++.  ..+..++++.|+++||.+.+       .+..++|++
T Consensus       289 ~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~~~~~~--~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~  358 (385)
T TIGR01825       289 RLWDNTRFFKAGLGK-LGYDTG----GSETP---ITPVVIGD--EKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNI  358 (385)
T ss_pred             HHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEECC--HHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEE
Confidence            888899999999987 543222    12233   67766654  33567899999999999853       134789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++.++++++++++++|+++++++
T Consensus       359 ~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       359 PTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             EcCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK07683 aminotransferase A; Validated

Probab=99.90  E-value=2.2e-22  Score=176.15  Aligned_cols=237  Identities=17%  Similarity=0.165  Sum_probs=165.3

Q ss_pred             cccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          11 NEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ..+...+.+++.++.+      |.+++++.+.  ++++++++..++|++|.+ ++.+.+++|.++|+++|+++|+||+|.
T Consensus       128 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~  204 (387)
T PRK07683        128 PIIRLCGAKPVFIDTRSTGFRLTAEALENAIT--EKTRCVVLPYPSNPTGVT-LSKEELQDIADVLKDKNIFVLSDEIYS  204 (387)
T ss_pred             HHHHHcCCEEEEeecCcccCCCCHHHHHHhcC--cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEEecccc
Confidence            3345567777777643      5688888883  467888888788889987 899999999999999999999999998


Q ss_pred             CcCCcCccccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-
Q psy6547          85 GLGRTGKLLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-  158 (266)
Q Consensus        85 ~~~~~g~~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-  158 (266)
                      ++...+.......    .+....+.++||.++ +| +|+||+++++++++.+.........+.+.+.+.++...++... 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  283 (387)
T PRK07683        205 ELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKD  283 (387)
T ss_pred             cceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChH
Confidence            7633222212111    122344555999999 99 9999999999988887654333344456677777776665321 


Q ss_pred             -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547         159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S  230 (266)
Q Consensus       159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~  230 (266)
                       .+..+++++++++.+.+.|.+ .+   +....+..|.   ++|..++.. ..+..+++..+ .++||.+.|+      .
T Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  355 (387)
T PRK07683        284 DAKMMRHQYKKRRDYVYNRLIS-MG---LDVEKPTGAF---YLFPSIGHF-TMSSFDFALDLVEEAGLAVVPGSAFSEYG  355 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCeeE---EEEEecccC-CCCHHHHHHHHHHhCCEEEcCchhhCCCC
Confidence             123556667777777777776 32   2221223455   566555431 23566787664 6789999885      2


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+++|++..  .+++++.+++++|.+.+++-
T Consensus       356 ~~~~Ri~~~--~~~~~~~~al~~l~~~l~~~  384 (387)
T PRK07683        356 EGYVRLSYA--YSIETLKEGLDRLEAFLQQK  384 (387)
T ss_pred             CCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence            479999955  58999999999999988653

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.90  E-value=1.7e-22  Score=177.66  Aligned_cols=247  Identities=17%  Similarity=0.202  Sum_probs=170.0

Q ss_pred             cCCcCcccccCCCCCCceeecCC-------CHH----HHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHH
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYN-------DVD----ALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS   71 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~-------d~~----~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~   71 (266)
                      .++|.+...+...+.+++.++.+       |++    .+++++++. +++++++++.++|++|.+ ++.+.+++|.++|+
T Consensus       127 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~-~s~~~~~~l~~~a~  205 (403)
T PRK08636        127 PAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTAT-VEKSFYERLVALAK  205 (403)
T ss_pred             CCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHH
Confidence            34455555667778888887642       344    456667543 368888888778888887 99999999999999


Q ss_pred             hcCCEEEEeccccCcCCcCcc-cccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547          72 QYNVLFIADEVQTGLGRTGKL-LAIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL  145 (266)
Q Consensus        72 ~~g~~li~De~~~~~~~~g~~-~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (266)
                      +|+++||+||+|..+...+.. .+....    ++...+.+|||.++ +| +|+||+++++++++.+........++.+.+
T Consensus       206 ~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~  284 (403)
T PRK08636        206 KERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTP  284 (403)
T ss_pred             HcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChH
Confidence            999999999999876433321 111111    12233445999996 99 999999999998887765444334555666


Q ss_pred             HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-H
Q psy6547         146 ACKLAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-D  221 (266)
Q Consensus       146 ~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~  221 (266)
                      .+.++..+++....  +.+.+.++++++.+.+.|++ .+   +....+..|.   ++|+.+++.. ..+..+++.+++ +
T Consensus       285 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~p~~g~---~~~~~l~~~~~~~~~~~l~~~ll~~  357 (403)
T PRK08636        285 IQVAATIALDGDQSCVEEIRETYRKRRDVLIESFAN-AG---WELQKPRASM---FVWAKIPEPARHLGSLEFSKQLLTE  357 (403)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCcce---EEEEECCCccCCCCHHHHHHHHHHh
Confidence            66666555532111  23455566666677777766 32   2221234677   9999987521 124678887755 6


Q ss_pred             CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         222 AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       222 ~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +||.+.|+      +.+++|++..  .+++++++++++|.++++.+
T Consensus       358 ~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~  401 (403)
T PRK08636        358 AKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL  401 (403)
T ss_pred             CCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence            89999886      2479999964  68999999999999998764

>PRK08960 hypothetical protein; Provisional

Probab=99.90  E-value=4.3e-22  Score=174.33  Aligned_cols=239  Identities=13%  Similarity=0.119  Sum_probs=166.3

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      +|.....+...+.+++.++.       .|++++++.++  ++++++++..++|++|.+ ++.+.+++|+++|++||+++|
T Consensus       126 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li  202 (387)
T PRK08960        126 YPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN--ADTVGALVASPANPTGTL-LSRDELAALSQALRARGGHLV  202 (387)
T ss_pred             CcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC--ccceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCEEE
Confidence            34444445556667777763       25788988883  346666666678888887 899999999999999999999


Q ss_pred             EeccccCcCCcCcccccccCCCCcC---eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          79 ADEVQTGLGRTGKLLAIHYEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        79 ~De~~~~~~~~g~~~~~~~~~~~~d---~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +||+|.++...+....  .....++   +.+|||.++ +| +|+||+++++++++.+.......+.+.+.+.+.++.+++
T Consensus       203 ~De~Y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l  279 (387)
T PRK08960        203 VDEIYHGLTYGVDAAS--VLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACF  279 (387)
T ss_pred             EEccccccccCCCCCC--hhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHh
Confidence            9999987633222111  1122333   344999997 89 999999999998887765545555667888888887777


Q ss_pred             HHH-hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-
Q psy6547         155 DVI-LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-  229 (266)
Q Consensus       155 ~~~-~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-  229 (266)
                      +.. ..  ...++.++++++.+.+.|++ .+.... . .+..|.   ++|+.+++. ..+..+++++|+ ++||.+.|+ 
T Consensus       280 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~-~-~p~g~~---f~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~  352 (387)
T PRK08960        280 EPETLAILEARRAEFARRRDFLLPALRE-LGFGIA-V-EPQGAF---YLYADISAF-GGDAFAFCRHFLETEHVAFTPGL  352 (387)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCC-c-CCCeeE---EEEEecccc-CCCHHHHHHHHHHhCCEEEcCch
Confidence            521 11  23455566677777777776 432211 1 233467   888888641 135678998876 689999975 


Q ss_pred             ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 ------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                            ..+++|++..  .+.+.+.+++++|.+++.
T Consensus       353 ~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        353 DFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR  386 (387)
T ss_pred             HhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence                  2369999966  478899999999988764

>PRK12414 putative aminotransferase; Provisional

Probab=99.90  E-value=1.4e-22  Score=177.12  Aligned_cols=230  Identities=17%  Similarity=0.163  Sum_probs=161.9

Q ss_pred             CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ...+.+++.++.+      |+++|++.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|..+.
T Consensus       132 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l--~~~~~~v~i~~p~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~  208 (384)
T PRK12414        132 RLQGATPVAIKLSPEDFRVNWDEVAAAI--TPRTRMIIVNTPHNPSATV-FSAADLARLAQLTRNTDIVILSDEVYEHVV  208 (384)
T ss_pred             HHcCCEEEEEecCccccccCHHHHHhhc--CcccEEEEEcCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence            4456667776642      678899888  3468888888888888987 899999999999999999999999998764


Q ss_pred             CcCccc-ccc-cCC---CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hc
Q psy6547          88 RTGKLL-AIH-YED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EE  160 (266)
Q Consensus        88 ~~g~~~-~~~-~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~  160 (266)
                      ..+... .+. ..+   ....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++..+|+.-. ..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~  287 (384)
T PRK12414        209 FDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYL  287 (384)
T ss_pred             CCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHH
Confidence            333211 111 111   2334455999998 99 9999999999988887765555667778888888877774211 11


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH-HHHHHCCceeccCC--------C
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC-IKMKDAGLVTKPIS--------N  231 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gi~~~~~~--------~  231 (266)
                      ...+.++++++.+.+.|++ .+   +.......|.   ++|+.++.....+..+++ +.|.++||.+.|+.        .
T Consensus       288 ~~~~~~~~~r~~l~~~L~~-~g---~~~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~  360 (384)
T PRK12414        288 GLGAFYQRKRDLLARELAG-SR---FELLPSEGSF---FMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDT  360 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CC---CeecCCCcce---EEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCC
Confidence            3566777788888888877 43   2221233456   677676531112345566 55668899999852        4


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +++|++..  .+++++++++++|.+
T Consensus       361 ~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        361 GLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             CEEEEEec--CCHHHHHHHHHHHhh
Confidence            68999955  579999999999864

>PLN02187 rooty/superroot1

Probab=99.90  E-value=2.3e-22  Score=179.13  Aligned_cols=241  Identities=15%  Similarity=0.112  Sum_probs=159.8

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ..-.+.+++.++.       .|+++|++++  .++++++++..++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus       172 ~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~--~~~~~~v~i~nP~NPTG~v-~s~e~l~~i~~~a~~~~i~iI~DE~Y~~  248 (462)
T PLN02187        172 AAYSGLEVRKFDLLPEKEWEIDLEGIEAIA--DENTVAMVVINPNNPCGNV-YSHDHLKKVAETARKLGIMVISDEVYDR  248 (462)
T ss_pred             HHHcCCEEEEEeCccccCCccCHHHHHHhc--CCCcEEEEEeCCCCCCCCc-cCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence            3445667777653       2689999888  3345666655567888877 8999999999999999999999999988


Q ss_pred             cCCcCccc-ccccC-CC--CcCeeeeccccc-CCchhhhhheec-H-Hh---hhccCCCCCCCCC--CCcHHHHHHHHHH
Q psy6547          86 LGRTGKLL-AIHYE-DV--RPDIVILGKALS-GGLYPISAVLAD-D-EV---MGTLVPGTHGSTY--GGNPLACKLAMTA  153 (266)
Q Consensus        86 ~~~~g~~~-~~~~~-~~--~~d~~~~sK~~~-~g~~~~g~~~~~-~-~~---~~~~~~~~~~~~~--~~~~~~~~a~~~~  153 (266)
                      +...+..+ +...+ ..  ...+.+|||.++ +| +|+||++++ + .+   .+.+........+  +++.+.+.++.++
T Consensus       249 l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~  327 (462)
T PLN02187        249 TIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAI  327 (462)
T ss_pred             cccCCCCceeHHHhccCCcEEEEecchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence            64333222 22111 11  233344999977 89 999999973 2 22   2233322222222  3477888888888


Q ss_pred             HHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--ccc-hHHHHHHH-HHHCCcee
Q psy6547         154 LDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AIL-EVYDVCIK-MKDAGLVT  226 (266)
Q Consensus       154 l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~~~~~~~~-l~~~gi~~  226 (266)
                      |+....   ++..+.++++++.+.+.|++ ++...... .+..|+   |+|+.++..  .+. +..+++.+ +.++||.+
T Consensus       328 L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~-~P~gg~---fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v  402 (462)
T PLN02187        328 LEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPK-KPESCT---YLLTKLELSLMDNIKDDIDFCVKLAREENLVF  402 (462)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCC-CCCEeE---EEEeecChhhCCCCCCHHHHHHHHHhhCCEEE
Confidence            853111   33556677777788888877 43221111 234467   888876521  111 34566555 47889999


Q ss_pred             ccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         227 KPI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       227 ~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      .|+    ..+++|++.  ..+++++++++++|.++++++.++
T Consensus       403 ~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~~~l~~~~~~  442 (462)
T PLN02187        403 LPGDALGLKNWMRITI--GVEAHMLEDALERLKGFCTRHAKK  442 (462)
T ss_pred             ECccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhhhc
Confidence            986    358999994  467999999999999999887654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.89  E-value=7.4e-22  Score=170.98  Aligned_cols=225  Identities=17%  Similarity=0.175  Sum_probs=164.7

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CC
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GR   88 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~   88 (266)
                      ..-.+.+++.++.+|+++|++.+++.  +++++++++++++++|...    ++++|.++|+++|+++|+||+|+.+  +.
T Consensus       117 ~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~li~De~~~~~~~~~  192 (360)
T TIGR00858       117 CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA----PLPQLVALAERYGAWLMVDDAHGTGVLGE  192 (360)
T ss_pred             HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc----CHHHHHHHHHHcCcEEEEECcccccCcCC
Confidence            34456778888889999999999653  3578888998888888775    7999999999999999999999532  11


Q ss_pred             cCcccccccCCC-----CcCeeeecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhh-c
Q psy6547          89 TGKLLAIHYEDV-----RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILE-E  160 (266)
Q Consensus        89 ~g~~~~~~~~~~-----~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~-~  160 (266)
                      .+.. ....+++     +..+.++||++++   +.||+++++++.+.+.....  ..+.+.++..++++.++++.+.. +
T Consensus       193 ~~~~-~~~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  268 (360)
T TIGR00858       193 DGRG-TLEHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEP  268 (360)
T ss_pred             CCCc-hHHhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCH
Confidence            1111 1122222     3336679999984   34788888888776643221  22233556667777788876654 3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNI  233 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~  233 (266)
                      +..++++++++++.+.|++ ++...    ....+.   ++|+.++.  ..+..+++++|+++||.+.+.       +.++
T Consensus       269 ~~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~  338 (360)
T TIGR00858       269 WRREKLLALIARLRAGLEA-LGFTL----MPSCTP---IVPVIIGD--NASALALAEELQQQGIFVGAIRPPTVPAGTSR  338 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCcc----CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCce
Confidence            5788999999999999988 54322    123455   89988865  456788999999999999642       2468


Q ss_pred             EEEeccCCCCHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      +|++++..++++++++++++|+
T Consensus       339 iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       339 LRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             EEEEEcCCCCHHHHHHHHHhhC
Confidence            9999999999999999999873

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.89  E-value=2.4e-22  Score=176.10  Aligned_cols=238  Identities=15%  Similarity=0.137  Sum_probs=166.7

Q ss_pred             ccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          10 YNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ...+...+.+++.++.       .|++++++.++  +++++++++.++|++|.+ ++.+.+++|.++|+++++++|+||+
T Consensus       131 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~~~v~i~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~  207 (391)
T PRK08361        131 VEDAKIAEAKPIRIPLREENEFQPDPDELLELIT--KRTRMIVINYPNNPTGAT-LDKEVAKAIADIAEDYNIYILSDEP  207 (391)
T ss_pred             HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc--cccEEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEEcc
Confidence            3334456677777764       36899999884  457888877778888876 8999999999999999999999999


Q ss_pred             ccCcCCcCc-cccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          83 QTGLGRTGK-LLAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        83 ~~~~~~~g~-~~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      |.+|...+. ..+...  ......+.++||.++ +| +|+||+++++++++.+.......+++.+.+.+.++..+++...
T Consensus       208 y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  286 (391)
T PRK08361        208 YEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKE  286 (391)
T ss_pred             cccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCc
Confidence            977632221 111111  122333445999998 89 9999999999888776543334455667778888777775321


Q ss_pred             h----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC----
Q psy6547         159 E----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI----  229 (266)
Q Consensus       159 ~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----  229 (266)
                      .    +...+.++++++.+.+.|++ ++.  +....+..|.   ++|+.++.. +.+..+++++|+ ++||.+.|+    
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~-~~~--~~~~~p~g~~---~~~~~l~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~  359 (391)
T PRK08361        287 SWKAVEEMRKEYNERRKLVLKRLKE-MPH--IKVFEPKGAF---YVFANIDET-GMSSEDFAEWLLEKARVVVIPGTAFG  359 (391)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHh-CCC--CeecCCCEEE---EEEEECCCC-CCCHHHHHHHHHHhCCEEEcCchhhC
Confidence            1    23455566677777777776 432  2221223466   788888631 346788998886 579999885    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                        +.+++|++..  .+++++++++++|.+++++
T Consensus       360 ~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        360 KAGEGYIRISYA--TSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence              2479999955  5788999999999998864

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.89  E-value=6.7e-22  Score=174.13  Aligned_cols=239  Identities=16%  Similarity=0.144  Sum_probs=156.5

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +...+.+++.++.       .|+++|+++++  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus       138 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~~~~~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~  214 (409)
T PLN00143        138 AIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD--ENTIAMVIINPGNPCGSV-YSYEHLNKIAETARKLGILVIADEVYGH  214 (409)
T ss_pred             HHHcCCEEEEEeccCCCCCcCCHHHHHHhcc--cCCEEEEEECCCCCCCCc-cCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence            3445677777753       27899998883  345555554457888887 8999999999999999999999999988


Q ss_pred             cCCcCccc-ccccC---CCCcCeeeeccccc-CCchhhhhheec-H-Hhh------hccCCCCCCCCCCCcHHHHHHHHH
Q psy6547          86 LGRTGKLL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLAD-D-EVM------GTLVPGTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        86 ~~~~g~~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~-~-~~~------~~~~~~~~~~~~~~~~~~~~a~~~  152 (266)
                      +...+..+ +....   .....+.+|||.++ +| +|+||++++ + .+.      +.+........+ .+.+.+.++..
T Consensus       215 l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~  292 (409)
T PLN00143        215 IVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPE  292 (409)
T ss_pred             cccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHH
Confidence            74433321 11111   12234445999977 88 999999983 3 332      222211122222 46678888877


Q ss_pred             HHHHHh---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--cc-chHHHHHHHH-HHCCce
Q psy6547         153 ALDVIL---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AI-LEVYDVCIKM-KDAGLV  225 (266)
Q Consensus       153 ~l~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-~~~~~~~~~l-~~~gi~  225 (266)
                      +|+...   -++..+++++..+.+.+.|++ ++...... .+..|+   |+|+.++..  .+ .+..+++.++ .++||.
T Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~-~p~gg~---f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~  367 (409)
T PLN00143        293 ILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQ-KAEGAF---FALVKLNLLLLEDIEDDMEFCLKLAKEESLI  367 (409)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC-CCCeeE---EEEEecchhhcCCCCCHHHHHHHHHHhCCEE
Confidence            775311   123455666666666777766 43211111 234577   999998641  01 1455666555 688999


Q ss_pred             eccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         226 TKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       226 ~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +.|+    ..+++|++..  .+++++++++++|.+++.++..
T Consensus       368 v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l~~~~~  407 (409)
T PLN00143        368 ILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFCGRHAK  407 (409)
T ss_pred             EeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHHhcc
Confidence            9986    3579999954  6799999999999999987643

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.89  E-value=5.2e-22  Score=170.10  Aligned_cols=229  Identities=14%  Similarity=0.056  Sum_probs=159.9

Q ss_pred             CcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEE-EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~-i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ++.....+..++.+++.++.   +++++.++   ++++ ++++| +|++|.+ ++.+.+++|+++|+++|++||+||+|.
T Consensus        96 y~~~~~~~~~~g~~~~~v~~---~~~~~~~~---~~~~v~l~nP-~NPTG~~-~s~~~l~~l~~~~~~~~~~iI~DE~y~  167 (330)
T PRK05664         96 YAEHAHAWRRAGHQVRELDE---AEVEAALD---SLDVLVVVNP-NNPTGRR-FDPARLLAWHARLAARGGWLVVDEAFM  167 (330)
T ss_pred             hHHHHHHHHHcCCeEEEech---hhHhhhhc---CCCEEEEeCC-cCCCCCc-cCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence            33344556677888888864   45666663   2344 45555 5788887 899999999999999999999999997


Q ss_pred             CcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      ++.................+.+|||.++ +| +|+||+++++++.+.+...  ..+++.+.+++.++..+|+.... +..
T Consensus       168 ~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~G-lRiG~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~  244 (330)
T PRK05664        168 DNTPQHSLAACAHRPGLIVLRSFGKFFGLAG-ARLGFVLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQ  244 (330)
T ss_pred             cCCCcccccccccCCCEEEEeeccccccCCC-cceEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHH
Confidence            6632222112221122334555999999 99 9999999999998887753  23455677888888888864321 346


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-CCCEEEEeccCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALN  241 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~  241 (266)
                      ++.++++++.+.+.|++ .+   +.. ..+.++   ++|+..+     ++.++.+.|.++||.++.. ..+++|++..  
T Consensus       245 ~~~~~~~r~~l~~~L~~-~~---~~~-~~~~~~---f~~~~~~-----~~~~~~~~l~~~gi~v~~f~~~~~iRis~~--  309 (330)
T PRK05664        245 RERLLAASQRLAALLRR-HG---LTP-AGGCAL---FQWVRTE-----DAAALHEFLARRGILTRLFEQPASLRFGLP--  309 (330)
T ss_pred             HHHHHHHHHHHHHHHHH-CC---Ccc-cCCcce---EEEEecC-----CHHHHHHHHHHCCeEEEECCCCCeEEEECC--
Confidence            67777788888888887 42   211 122235   7777653     4688999999999999865 4579999944  


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINT  260 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~  260 (266)
                      .++++++++.+.|++..++
T Consensus       310 ~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        310 ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            3678888888888876554

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.89  E-value=7.4e-23  Score=177.63  Aligned_cols=234  Identities=19%  Similarity=0.187  Sum_probs=167.1

Q ss_pred             CcCcccccCCCCCCceeec-------CCCHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           6 DPTSYNEFGPHMPGYNIIP-------YNDVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~-------~~d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      ++.....+.-.+.+++.++       +.|+++|++.+++.+    ++++++++.++|++|.+ ++.+.+++|+++|++||
T Consensus       103 y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~-~~~~~l~~l~~~~~~~~  181 (363)
T PF00155_consen  103 YPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSV-LSLEELRELAELAREYN  181 (363)
T ss_dssp             STHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTT
T ss_pred             cccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccc-cccccccchhhhhcccc
Confidence            3444444556677888888       669999999997631    46888888888999987 89999999999999999


Q ss_pred             CEEEEeccccCcCCcCccc-c-cccCCC---CcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547          75 VLFIADEVQTGLGRTGKLL-A-IHYEDV---RPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~~~-~-~~~~~~---~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      ++||+||+|.++......+ . ......   ...+.++||.++ +| +|+||+++++++.+.++....  .+..+...+.
T Consensus       182 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~--~~~~~~~~~~  258 (363)
T PF00155_consen  182 IIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQR--SGLSSSPMQA  258 (363)
T ss_dssp             SEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHH--HTTSSHHHHH
T ss_pred             cceeeeeceeccccCCCccCcccccccccccceeeeeccccccccc-cccccccchhhhhhhhhhccc--cccccchhhH
Confidence            9999999998763322211 1 111111   234455999998 88 999999999998888775332  2223666666


Q ss_pred             HHHHHHHHHhh-----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-
Q psy6547         149 LAMTALDVILE-----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-  222 (266)
Q Consensus       149 a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  222 (266)
                      ++..++.....     ++..++++++.+.+.+.|++ .   .+.......|.   ++|+.+..   .++.+++++|+++ 
T Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~---~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~L~~~~  328 (363)
T PF00155_consen  259 AAAAALSDPELVEKWLEELRERLRENRDLLREALEE-I---GITVLPPEAGF---FLWVRLDP---NDAEELAQELLEEY  328 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T---TSEEEHHSBSS---EEEEEESH---HHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccccccchhhHHHHHHHHHHHHHH-h---hhheeeccCcc---EEEEEccc---chHHHHHHHHHHhC
Confidence            66666654432     34667777788888888877 3   23321122455   66666655   2678999999988 


Q ss_pred             CceeccC----CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         223 GLVTKPI----SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       223 gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      ||.+.|+    ..+++|+++ ...+++++++++++|
T Consensus       329 gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  329 GILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             TEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            9999974    467999997 678999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02656 tyrosine transaminase

Probab=99.89  E-value=4.6e-22  Score=175.21  Aligned_cols=238  Identities=16%  Similarity=0.110  Sum_probs=160.7

Q ss_pred             CCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.++.       .|+++++++++  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|.
T Consensus       139 ~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~  215 (409)
T PLN02656        139 FRHLEVRYVDLLPEKGWEVDLDAVEALAD--QNTVALVIINPGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLA  215 (409)
T ss_pred             HcCCEEEEEeCCCcCCCCCCHHHHHHHhc--cCceEEEEECCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence            34666666653       26889998883  345666666668888877 899999999999999999999999998774


Q ss_pred             CcCccc-cc---ccCCCCcCeeeeccccc-CCchhhhhheec--------HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          88 RTGKLL-AI---HYEDVRPDIVILGKALS-GGLYPISAVLAD--------DEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        88 ~~g~~~-~~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      ..+..+ +.   ........+.+|||.++ +| +|+||++++        +++.+.+...... ..+.+.+.+.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l  293 (409)
T PLN02656        216 FGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTIL  293 (409)
T ss_pred             cCCCCcccHHHhcccCcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHH
Confidence            433221 11   11122334455999966 89 999999983        4666665532221 2346778888888888


Q ss_pred             HHHh---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--cc-chHHHH-HHHHHHCCceec
Q psy6547         155 DVIL---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AI-LEVYDV-CIKMKDAGLVTK  227 (266)
Q Consensus       155 ~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-~~~~~~-~~~l~~~gi~~~  227 (266)
                      +...   -++..+.++++++.+.+.|+. ++...... .+..|+   ++|+.++..  .. .+..++ .+.|.++||.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~-~p~gg~---~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~  368 (409)
T PLN02656        294 EQTDESFFKKTINILKQSSDICCDRIKE-IPCITCPH-KPEGSM---AVMVKLNLSLLEDISDDIDFCFKLAREESVIIL  368 (409)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCc-CCCeEE---EEEEecchhhcCCCCCHHHHHHHHHHhCCEEEe
Confidence            6311   123455667777777777776 43211111 234567   889888631  01 134454 456678999999


Q ss_pred             cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      |+    ..+++|++..  .+++++++++++|.+++.+...+
T Consensus       369 pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~~~~  407 (409)
T PLN02656        369 PGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRHSKT  407 (409)
T ss_pred             cchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhccc
Confidence            86    3579999955  58999999999999998876543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=2.4e-22  Score=174.25  Aligned_cols=225  Identities=10%  Similarity=0.053  Sum_probs=160.1

Q ss_pred             cccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          11 NEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ......+.+++.++.+    |++++++.+  .+++++++++.++|++|.+ ++.+.+.++++.|+ +|+++|+||+|.+|
T Consensus       120 ~~~~~~g~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~l~~~~~~~~-~~~~ii~De~y~~~  195 (359)
T PRK03158        120 HNAIIEGAEVREVPLKDGGHDLEAMLKAI--DEQTKIVWICNPNNPTGTY-VNHEELLSFLESVP-SHVLVVLDEAYYEY  195 (359)
T ss_pred             HHHHHcCCeEEEEecCCCCcCHHHHHHhc--CCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchHhh
Confidence            3345567778888753    688888877  3467888877778889987 67777777776663 69999999999776


Q ss_pred             CCcCc-cc---ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hc
Q psy6547          87 GRTGK-LL---AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EE  160 (266)
Q Consensus        87 ~~~g~-~~---~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~  160 (266)
                      ...+. ..   ..+..+....+.+|||.++ +| +|+||+++++++.+.+....  .++..+++++.++..+++... .+
T Consensus       196 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~  272 (359)
T PRK03158        196 VTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLK  272 (359)
T ss_pred             cCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHH
Confidence            33221 11   1122233344556999999 89 99999999999888776533  346788999999988885321 12


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRL  236 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~  236 (266)
                      ...+.++++++.+.+.|++ .+   +.. .++.|.   |+|+.++.    +..++++.|.++||.+.++    ..+++|+
T Consensus       273 ~~~~~~~~~~~~~~~~l~~-~~---~~~-~~~~g~---~i~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi  340 (359)
T PRK03158        273 ECVEKNAEGLEQYYAFCKE-YG---LFY-YPSQTN---FIFVDTGR----DANELFEALLKKGYIVRSGAALGFPTGVRI  340 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHH-CC---Cee-CCCcCc---EEEEECCC----CHHHHHHHHHHCCeEEeeCCCCCCCCeEEE
Confidence            3444555666666666666 32   222 334577   88888743    5788999999999999985    3679999


Q ss_pred             eccCCCCHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINT  257 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +   ..+.+++++++++|+++
T Consensus       341 ~---~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        341 T---IGLKEQNDKIIELLKEL  358 (359)
T ss_pred             e---cCCHHHHHHHHHHHHHh
Confidence            9   33899999999999875

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.89  E-value=1.2e-21  Score=173.43  Aligned_cols=237  Identities=16%  Similarity=0.158  Sum_probs=158.7

Q ss_pred             CCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.       .|++++++++  ++++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|.+|..
T Consensus       161 ~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~i~~P~NPtG~v-~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~  237 (430)
T PLN00145        161 SGLEVRHFDLLPERGWEVDLEGVEALA--DENTVAMVIINPNNPCGSV-YSYEHLAKIAETARKLGILVIADEVYDHLTF  237 (430)
T ss_pred             cCCEEEEeeCCcccCCcCCHHHHHHHh--CcCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence            3455666552       2789999988  4456777766668888876 9999999999999999999999999987643


Q ss_pred             cCccc-ccccC---CCCcCeeeeccccc-CCchhhhhhee--cHHhhh------ccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          89 TGKLL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLA--DDEVMG------TLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        89 ~g~~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      .+..+ +....   .....+.+|||.++ +| ||+||+++  ++.+++      .+... .......+.+.+.++..+|+
T Consensus       238 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~  315 (430)
T PLN00145        238 GSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIA  315 (430)
T ss_pred             CCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHh
Confidence            33221 11111   12233444999976 89 99999987  333322      22221 12222456778888877776


Q ss_pred             HHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeC--cc-chHHHHHHHHH-HCCceec
Q psy6547         156 VILE---ENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVS--AI-LEVYDVCIKMK-DAGLVTK  227 (266)
Q Consensus       156 ~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--~~-~~~~~~~~~l~-~~gi~~~  227 (266)
                      ....   ++..+.++++++.+.+.|++ +.  .+.. ..+..|+   ++|+.++..  .+ .+..+++.+|+ ++||++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~--g~~~~~~P~ga~---y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~  389 (430)
T PLN00145        316 NTKEEFFTKTLGLLKETADICYEKIKE-IK--CITCPHKPEGSM---FVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVL  389 (430)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCCCCcCCCeee---EEEeccChhhcCCCCCHHHHHHHHHHhCCEEEe
Confidence            3111   23556667777777777776 32  2221 0244577   888887531  01 24567876665 6799999


Q ss_pred             cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                      |+    ..+++|++..  .+++++++++++|.+++.++.+++
T Consensus       390 pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~~~~  429 (430)
T PLN00145        390 PGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHAKLA  429 (430)
T ss_pred             CccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhcccc
Confidence            85    3589999954  689999999999999998876554

>PRK07550 hypothetical protein; Provisional

Probab=99.89  E-value=5.5e-22  Score=173.61  Aligned_cols=233  Identities=15%  Similarity=0.129  Sum_probs=165.6

Q ss_pred             ccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          12 EFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .+.-.+.+++.++.+       |+++++++++  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.
T Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~--~~~~~v~~~~P~NPtG~~-~~~~~~~~i~~~~~~~~~~iI~Dd~y~  206 (386)
T PRK07550        130 WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT--PRTRAIALVTPNNPTGVV-YPPELLHELYDLARRHGIALILDETYR  206 (386)
T ss_pred             HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc--ccCcEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCeEEEEeccch
Confidence            345567777777752       6788999994  356776666667888876 899999999999999999999999998


Q ss_pred             CcCCcCc-cc-ccccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          85 GLGRTGK-LL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        85 ~~~~~g~-~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +|...+. .. .....   .....+.+|||.++ +| +|+||+++++++++.+.......+.+++.+++.++..+++.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~  285 (386)
T PRK07550        207 DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLA  285 (386)
T ss_pred             hhccCCCCCcchhhCCCccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHH
Confidence            7632221 11 11111   12344556999998 89 9999999999888777655445556667788888877776432


Q ss_pred             h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------
Q psy6547         159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------  229 (266)
Q Consensus       159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------  229 (266)
                      .  ++..++++++++.+.+.|.. ..  .+.. ....|.   ++|+.++.. +.++.+++++|. ++||.+.|+      
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~-~~~g~~---~~~~~~~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~~~  357 (386)
T PRK07550        286 DWRAGNRAEIARRRDAFRAVFAR-LP--GWEL-LASGAY---FAYVRHPFP-DRPSREVARRLAKEAGILCLPGTMFGPG  357 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CC--Ccee-CCCceE---EEEecCCCC-CCCHHHHHHHHHHhcCEEEeCchhhCCC
Confidence            2  23556677777777777776 32  2222 223456   788887641 346788999875 679999985      


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ..+++|+++.. .+++++++++++|.++
T Consensus       358 ~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        358 QEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            25799999753 4789999999999875

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.89  E-value=6.1e-22  Score=174.16  Aligned_cols=238  Identities=12%  Similarity=0.104  Sum_probs=163.1

Q ss_pred             cccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          11 NEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ..+...+.+++.++.       .|++++++.++  +++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|
T Consensus       134 ~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y  210 (401)
T TIGR01264       134 TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID--EKTAALIVNNPSNPCGSV-FSRQHLEEILAVAERQCLPIIADEIY  210 (401)
T ss_pred             HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc--cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhh
Confidence            334555667766653       26889988883  356788877778888876 89999999999999999999999999


Q ss_pred             cCcCCcCccc-cccc-CC--CCcCeeeeccccc-CCchhhhhheecH------HhhhccCCCCCCCCCCCcHHHHHHHHH
Q psy6547          84 TGLGRTGKLL-AIHY-ED--VRPDIVILGKALS-GGLYPISAVLADD------EVMGTLVPGTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        84 ~~~~~~g~~~-~~~~-~~--~~~d~~~~sK~~~-~g~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (266)
                      .+|...+..+ .+.. ..  ....+.+|||.++ +| +|+||++++.      ++.+.+..... ..++.+++.+.++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~  288 (401)
T TIGR01264       211 GDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPS  288 (401)
T ss_pred             hhhccCCcccccHHHcCCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHH
Confidence            8874444211 1111 11  1223444999977 88 9999999863      33333332111 234567788888877


Q ss_pred             HHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCce
Q psy6547         153 ALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGLV  225 (266)
Q Consensus       153 ~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi~  225 (266)
                      +|+....   +...+.++++++.+.+.|++ ++  .+....+..|+   |+|+.++..   +..+..+++++|+ ++||.
T Consensus       289 ~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~  362 (401)
T TIGR01264       289 ILLRTPQEYFDGTLSVLESNAMLCYGALAA-VP--GLRPVMPSGAM---YMMVGIEMEHFPEFKNDVEFTERLVAEQSVF  362 (401)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcccCCCeee---EEEEEecccccCCCCCHHHHHHHHHHhCCEE
Confidence            7753111   23556667777778788877 42  23221345688   999987531   1235678888886 78999


Q ss_pred             eccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         226 TKPI----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       226 ~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.|+    ..+++|++..  .+++++++++++|.++++++
T Consensus       363 v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       363 CLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             EeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhcc
Confidence            9975    3589999954  57899999999999988653

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.89  E-value=3.3e-22  Score=175.40  Aligned_cols=227  Identities=14%  Similarity=0.007  Sum_probs=158.6

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.-.+.+++.++.       .|++++++.+.  +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|..
T Consensus       133 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~  209 (393)
T TIGR03538       133 ALLAGAEPYFLNCTAENGFLPDFDAVPESVW--RRCQLLFVCSPGNPTGAV-LSLDTLKKLIELADQYGFIIASDECYSE  209 (393)
T ss_pred             HHhcCCeEEEeeccccCCCCCCHHHHHHHHh--hcceEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCEEEEECcchhh
Confidence            3345677777764       26788888873  367888887788888987 8999999999999999999999999977


Q ss_pred             cCCcC--cccc----cccC-----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          86 LGRTG--KLLA----IHYE-----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        86 ~~~~g--~~~~----~~~~-----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      +...+  ....    ....     .....+.+|||.++ +| +|+||+++++++++.+.......+++.+++.+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~  288 (393)
T TIGR03538       210 LYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA  288 (393)
T ss_pred             cccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHH
Confidence            64322  1111    1111     12234455999876 88 99999999998887776544444556677777777666


Q ss_pred             HHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC-
Q psy6547         154 LDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS-  230 (266)
Q Consensus       154 l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~-  230 (266)
                      +..-+ -+...+.++++.+.+.+.|++ .    +....+..|.   ++|+.++.    +..+++++|+ ++||.+.|+. 
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~~~~L~~-~----~~~~~p~gg~---f~~~~~~~----~~~~~~~~l~~~~gV~v~pg~~  356 (393)
T TIGR03538       289 WNDEQHVRENRALYREKFAAVLEILGQ-V----LDLELPDAGF---YLWPKVPG----DDEAFARALYEEENVTVLPGRF  356 (393)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHh-h----CcccCCCeeE---EEEEECCC----CHHHHHHHHHHHCCEEEeCCcc
Confidence            63211 123455566666667777665 2    1111344577   99999873    3577888876 6799997652 


Q ss_pred             -----------CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         231 -----------NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       231 -----------~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                 .+++|++.  ..+++++++++++|.++
T Consensus       357 f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       357 LAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRSF  392 (393)
T ss_pred             ccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHh
Confidence                       36899994  45789999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.89  E-value=4.4e-22  Score=170.64  Aligned_cols=225  Identities=14%  Similarity=0.149  Sum_probs=172.1

Q ss_pred             cCCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          13 FGPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        13 ~~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ..-.+.+++.++.    .|++++.+.++  ++++++++..++|++|.. ++.+.++++.+.+.+ +.+||+||+|.+|..
T Consensus       116 a~~~g~~~~~v~~~~~~~d~~~~~~~~~--~~~~lv~i~nPNNPTG~~-~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~  191 (356)
T COG0079         116 AQLAGAEVVKVPLKEFRLDLDAILAAIR--DKTKLVFLCNPNNPTGTL-LPREELRALLEALPE-GGLVVIDEAYIEFSP  191 (356)
T ss_pred             HHhcCCeEEEecccccccCHHHHHHhhh--cCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEeCchhhcCC
Confidence            4566778888887    46788887773  368899988888889988 888999999998888 999999999998854


Q ss_pred             cCcccccccCCCCcCeee---eccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHH
Q psy6547          89 TGKLLAIHYEDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI  163 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~---~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~  163 (266)
                        .. ......-.+++++   |||.+| +| +|+||+++++++++.++.  ....|..|.++++++.++++.-+. +...
T Consensus       192 --~~-~~~l~~~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~~~~~~~~  265 (356)
T COG0079         192 --ES-SLELLKYPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDADYLEESV  265 (356)
T ss_pred             --ch-hhhhccCCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccHHHHHHHH
Confidence              11 1111111232444   999999 99 999999999999999884  677888899999999988875422 3466


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEec
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSP  238 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~  238 (266)
                      +++.+.++++.+.|+. ++...  . .++.++   |+.+.++.  .. +.++.++|.++||+++...     .+++|++ 
T Consensus       266 ~~~~~~r~rl~~~l~~-~~~~~--v-~pS~aN---Fvlv~~~~--~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit-  334 (356)
T COG0079         266 ERIREERERLYAALKA-LGLFG--V-FPSQAN---FVLVRVPD--AE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT-  334 (356)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCe--e-cCCCCc---EEEEECCC--cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE-
Confidence            7777778888888877 54111  1 334466   99999987  44 6789999999999999763     3699999 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                        ..|+++.+++++.|.++++.
T Consensus       335 --vgt~een~~ll~AL~~~~~~  354 (356)
T COG0079         335 --VGTPEENDRLLAALREVLKG  354 (356)
T ss_pred             --eCCHHHHHHHHHHHHHHHhc
Confidence              45888889999999998764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.89  E-value=7.2e-22  Score=173.48  Aligned_cols=235  Identities=17%  Similarity=0.197  Sum_probs=164.8

Q ss_pred             CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      -.+.+++.++.        +++++|++++  .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|
T Consensus       131 ~~g~~~~~v~~~~~~g~~~~~~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~~~~~~~~ii~De~y~~~  207 (397)
T PRK07568        131 SAGVKIVPVTTKIEEGFHLPSKEEIEKLI--TPKTKAILISNPGNPTGVV-YTKEELEMLAEIAKKHDLFLISDEVYREF  207 (397)
T ss_pred             HcCCEEEEeecCcccCCCCCCHHHHHHhc--CccceEEEEECCCCCCCcc-CCHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence            44666677663        1458888888  3467888877677888876 89999999999999999999999999887


Q ss_pred             CCcCccc-cc-ccCC---CCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          87 GRTGKLL-AI-HYED---VRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        87 ~~~g~~~-~~-~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ...+..+ +. ...+   ....+.++||.++ +| +|+||++++ +++.+.+..... ..++.+.+.+.++..+++..+.
T Consensus       208 ~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~  285 (397)
T PRK07568        208 VYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPES  285 (397)
T ss_pred             ccCCCCccChhhcCCCcCCEEEEecchhhccCCC-cceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHH
Confidence            4444211 11 1112   1233345999999 79 999999984 667665543222 2456778888888777753211


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH------CCceeccC--
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD------AGLVTKPI--  229 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gi~~~~~--  229 (266)
                        +++.+.++++++.+.+.|++ +..  +....+..|.   ++|+.++.  . +..+++++|.+      +||.+.|+  
T Consensus       286 ~~~~~~~~~~~~~~~l~~~L~~-~~~--~~~~~p~g~~---~~~~~l~~--~-~~~~~~~~l~~~~~~~~~gv~v~pg~~  356 (397)
T PRK07568        286 YFDEVREEYKKRRDILYEELNK-IPG--VVCEKPKGAF---YIIAKLPV--D-DAEDFAKWLLTDFNYNGETVMVAPASG  356 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCC--ceecCCCcce---EEEEecCC--C-CHHHHHHHHHhhcccccceEEEeCchH
Confidence              23566677788888888877 432  2221233456   77888875  2 56788888875      59999874  


Q ss_pred             -------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         230 -------SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       230 -------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                             +.+++|++..  .+++++++++++|.+++++..++|
T Consensus       357 f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~~~~~~  397 (397)
T PRK07568        357 FYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALEKYNKRK  397 (397)
T ss_pred             hcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHhhccC
Confidence                   1369999954  678999999999999998877654

>PRK07337 aminotransferase; Validated

Probab=99.89  E-value=1e-21  Score=172.06  Aligned_cols=232  Identities=16%  Similarity=0.157  Sum_probs=162.7

Q ss_pred             cCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +...+.+++.++.+       |++++++.+  .++++++++..++|++|.+ ++.+.+++|+++|+++|+++|+||+|.+
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~  207 (388)
T PRK07337        131 VAAAEGRPVLVPSGPAERFQLTAADVEAAW--GERTRGVLLASPSNPTGTS-IAPDELRRIVEAVRARGGFTIVDEIYQG  207 (388)
T ss_pred             HHHcCCEEEEeecCCccCCcCCHHHHHhhc--CccceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence            44456667777642       578888888  4467788877778888876 8999999999999999999999999987


Q ss_pred             cCCcCcccccccCCCCcC---eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--h-
Q psy6547          86 LGRTGKLLAIHYEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-  158 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d---~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~-  158 (266)
                      +...+.....  .....+   +.++||.++ +| +|+||+++++++.+.+.........+.+.+++.++..+++.-  . 
T Consensus       208 ~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~  284 (388)
T PRK07337        208 LSYDAAPVSA--LSLGDDVITINSFSKYFNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAI  284 (388)
T ss_pred             cccCCCCcCh--hhccCCEEEEEechhhcCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHH
Confidence            7543322111  112233   345999997 88 999999999988887765444444456777887777766421  0 


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHH-HHCCceeccC-----
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKM-KDAGLVTKPI-----  229 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~-----  229 (266)
                      -.+..++++++++.+.+.|++ .+.... . .+..|+   ++|+.++..   +..+..+++.+| .++||.+.|+     
T Consensus       285 ~~~~~~~~~~~r~~~~~~L~~-~~~~~~-~-~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~  358 (388)
T PRK07337        285 YERRRAEFKRRRDFIVPALES-LGFKVP-V-MPDGAF---YVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCccc-c-CCCeeE---EEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence            123456666777777777776 432211 1 234577   999998641   123577888775 5789999874     


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                        ..+++|++..  .+++.+++++++|.+++
T Consensus       359 ~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        359 HAPRDYIRLSYA--TSMSRLEEAVARLGKLF  387 (388)
T ss_pred             CCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence              2479999965  47899999999998764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.89  E-value=5e-21  Score=165.54  Aligned_cols=230  Identities=15%  Similarity=0.177  Sum_probs=167.3

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      ++.+++.++.+     |++++++.++++++++.+++..+++++|.+.    ++++|.++|++||+++|+|++++ ++.  
T Consensus        96 ~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~livD~~~s-~g~--  168 (355)
T TIGR03301        96 LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILN----PLEAIAKVARSHGAVLIVDAMSS-FGA--  168 (355)
T ss_pred             cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchh----HHHHHHHHHHHcCCEEEEEeccc-cCC--
Confidence            45667776643     7899999997656677777766777788876    79999999999999999999874 432  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------------CCCCCCCcHHHHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------HGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~  153 (266)
                      ..+.+..++++..+.+++|+++|+ .++|++++++++++.+....                 ....++.+...+.++..+
T Consensus       169 ~~~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a  247 (355)
T TIGR03301       169 IPIDIEELDVDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQA  247 (355)
T ss_pred             cccchhhcCccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHH
Confidence            233444555555566699999765 45799999998887765210                 113456777777888888


Q ss_pred             HHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         154 LDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       154 l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      ++.+..+    +..++++++++++++.|++ ++...+.......+.   ++++.++.....+..++.++|.++||.+.++
T Consensus       248 l~~~~~~g~~~~~~~~~~~~~~~~~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~  323 (355)
T TIGR03301       248 LEELEAEGGVPARIARYRRNRELLVDGLRA-LGFQPLLPERWQSPI---IVSFLYPDDPDFDFDDFYQELKERGFVIYPG  323 (355)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHH-cCCeeecCCCCCCCc---EEEEECCCCCcchHHHHHHHHHHCCEEEECC
Confidence            8877543    3566778889999999987 554322211123455   6778776421245678999999999999886


Q ss_pred             C---CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 S---NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ~---~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .   .+++|++++..+++++++++++.|+++
T Consensus       324 ~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       324 KLTLADTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             ccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            4   279999998888999999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.89  E-value=3.3e-22  Score=173.71  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=156.2

Q ss_pred             cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547           7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      |........++.+++.+  +++++++    . .+++++++++++|++|.+ ++.+.+++|.++|+++|++||+||+|.++
T Consensus       122 ~~~~~~~~~~g~~~~~~--~~~~~l~----~-~~~~~v~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~  193 (364)
T PRK07865        122 PTYEVGARLAGATVVRA--DSLTELG----P-QRPALIWLNSPSNPTGRV-LGVDHLRKVVAWARERGAVVASDECYLEL  193 (364)
T ss_pred             ccHHHHHHhcCCEEEec--CChhhCC----c-ccceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecchhhh
Confidence            33333344455555555  3443332    1 467899988888888887 89999999999999999999999999876


Q ss_pred             CCcCcccc-ccc------CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          87 GRTGKLLA-IHY------EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        87 ~~~g~~~~-~~~------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      ...+.... +..      ......+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+++..+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  272 (364)
T PRK07865        194 GWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDA  272 (364)
T ss_pred             ccCCCCCccccccccCCccceEEEEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH
Confidence            44332211 111      112234455999996 89 9999999999988877654444555677788887777765311


Q ss_pred             h-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CC
Q psy6547         159 E-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SN  231 (266)
Q Consensus       159 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~  231 (266)
                      . +..++.++++++.+.+.|++ .+   +.......|.   ++|+.+..    +..+++++|.++||.+.|+      ..
T Consensus       273 ~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~~----~~~~~~~~l~~~gv~v~pg~~f~~~~~  341 (364)
T PRK07865        273 HVREQRERYARRRAVLRPALEA-AG---FRVDHSEAGL---YLWATRGE----DCWDTVAWLAERGILVAPGDFYGPAGA  341 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCccE---EEEEeCCC----CHHHHHHHHHHCCEEEeCccccCcCCC
Confidence            1 23556667777777777776 33   2221223455   67777643    4677889999999999874      25


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      +++|+++.  .+++++++++++|+
T Consensus       342 ~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        342 QHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             CEEEEEec--CCHHHHHHHHHHhh
Confidence            79999954  47899999999885

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.89  E-value=1.6e-21  Score=174.11  Aligned_cols=246  Identities=16%  Similarity=0.109  Sum_probs=166.6

Q ss_pred             CCcCcccccC-CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547           5 TDPTSYNEFG-PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ   72 (266)
Q Consensus         5 ~~~~~~~~~~-~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~   72 (266)
                      .+|.+...+. -.+.+++.++..       |++++++.+++    ..++++++++.++||+|.+ ++.+.+++|.++|++
T Consensus       144 ~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~-~s~e~l~~ll~~a~~  222 (468)
T PLN02450        144 YYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTT-TTRTELNLLVDFITA  222 (468)
T ss_pred             CCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcc-cCHHHHHHHHHHHHH
Confidence            3444445555 367778887742       56888888754    2368888877778888987 999999999999999


Q ss_pred             cCCEEEEeccccCcCCcCccc-c-ccc-----------CCCCcCeeeeccccc-CCchhhhhheecHH-hhhccCCCCCC
Q psy6547          73 YNVLFIADEVQTGLGRTGKLL-A-IHY-----------EDVRPDIVILGKALS-GGLYPISAVLADDE-VMGTLVPGTHG  137 (266)
Q Consensus        73 ~g~~li~De~~~~~~~~g~~~-~-~~~-----------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~-~~~~~~~~~~~  137 (266)
                      ||++||+||+|.++...+..+ + ...           .+....+.+|||.++ +| +|+||++++.+ +.+.+....  
T Consensus       223 ~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~--  299 (468)
T PLN02450        223 KNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMS--  299 (468)
T ss_pred             CCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHh--
Confidence            999999999998753333222 1 111           122334555999998 99 99999999754 445444221  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---c
Q psy6547         138 STYGGNPLACKLAMTALDVIL-----EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---I  209 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~  209 (266)
                      .....+.+++.++..+|+...     -++.++++++.++.+.+.|++ .+   +.......|+   |+|+.++..-   .
T Consensus       300 ~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~g---i~~~~~~~g~---flwi~l~~~~~~~~  372 (468)
T PLN02450        300 SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-AG---IKCLKSNAGL---FCWVDMRHLLKSNT  372 (468)
T ss_pred             hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCceE---EEEEEchHhcCcCC
Confidence            122357778888877775321     123456666677777777776 43   2221334677   8999886410   1


Q ss_pred             -chHHHHHHHHH-HCCceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 -LEVYDVCIKMK-DAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 -~~~~~~~~~l~-~~gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       .+..++.++|+ ++||.+.|+.      .+++|++... .+++++++++++|.+++.+..
T Consensus       373 ~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        373 FEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             chHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence             12345777776 5799999862      5799999443 478999999999999987755

>KOG0634|consensus

Probab=99.88  E-value=4.6e-21  Score=160.89  Aligned_cols=251  Identities=16%  Similarity=0.148  Sum_probs=185.0

Q ss_pred             CcCcccccCCCCCCceeecCC----CHHHHHHHHhcC-------CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSN-------PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-------~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      +|..-+...|++.+++.|+.+    +++.|++.+...       ++..++++-|. +|++|.. ++.+..++|.++|++|
T Consensus       158 y~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~t-ls~errk~iy~LArKy  236 (472)
T KOG0634|consen  158 YPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNT-LSLERRKKIYQLARKY  236 (472)
T ss_pred             chHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCc-cCHHHHHHHHHHHHHc
Confidence            445556678889889988876    699999998652       34788898885 6777776 9999999999999999


Q ss_pred             CCEEEEeccccCcCCc---C--------------------cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhc
Q psy6547          74 NVLFIADEVQTGLGRT---G--------------------KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT  130 (266)
Q Consensus        74 g~~li~De~~~~~~~~---g--------------------~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~  130 (266)
                      +++||+||.|.-+...   +                    .+...+..|....+-+|||-+++| .|+||+.++..+++.
T Consensus       237 DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~r  315 (472)
T KOG0634|consen  237 DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKR  315 (472)
T ss_pred             CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHH
Confidence            9999999999432111   0                    011123334455566699999999 999999999988877


Q ss_pred             cCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHHHhhcccccCCCcccEEecCccceeeEEE
Q psy6547         131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK-------MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI  203 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~  203 (266)
                      ........+.++|.+.+....+.|+.+..+++.+.+.+       ++..+.+.+.+++........++..|+   |+|+.
T Consensus       316 il~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGm---Fiwv~  392 (472)
T KOG0634|consen  316 ILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGM---FIWVE  392 (472)
T ss_pred             HhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcce---EEEEE
Confidence            76666677777888999999999998888766555554       444455555554544323332456799   99999


Q ss_pred             Ee-------eCccch--HHHHHHHHHHCCceeccC----------CCC-EEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         204 LS-------VSAILE--VYDVCIKMKDAGLVTKPI----------SNN-IIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       204 ~~-------~~~~~~--~~~~~~~l~~~gi~~~~~----------~~~-~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ++       +  ..+  .+.+...+.++||.+.++          ... ++|++.++. +.++++++++|+..++++...
T Consensus       393 i~~~~~~~~~--~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f~  469 (472)
T KOG0634|consen  393 IPYINFDTKK--SINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHFI  469 (472)
T ss_pred             eccccccccc--chHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHhh
Confidence            97       2  222  334556677999998765          123 899998876 778999999999999998754


Q ss_pred             c
Q psy6547         264 K  264 (266)
Q Consensus       264 ~  264 (266)
                      .
T Consensus       470 ~  470 (472)
T KOG0634|consen  470 T  470 (472)
T ss_pred             c
Confidence            3

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.88  E-value=9.1e-22  Score=168.65  Aligned_cols=218  Identities=12%  Similarity=0.065  Sum_probs=154.4

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +...+.+++.++  |++++++.++   ++++++++.++|++|.+ ++.+.+++|+++|+++|+++|+||+|.++......
T Consensus       103 ~~~~g~~~~~~~--d~~~l~~~~~---~~~~v~i~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~  176 (330)
T TIGR01140       103 WRAAGHEVVELP--DLDRLPAALE---ELDVLVLCNPNNPTGRL-IPPETLLALAARLRARGGWLVVDEAFIDFTPDASL  176 (330)
T ss_pred             HHHcCCEEEEeC--CHHHHHhhcc---cCCEEEEeCCCCCCCCC-CCHHHHHHHHHHhHhcCCEEEEECcccccCCccch
Confidence            455566677766  8999999883   34566666668888887 89999999999999999999999999877432111


Q ss_pred             ccc-ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHH
Q psy6547          93 LAI-HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKM  169 (266)
Q Consensus        93 ~~~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~  169 (266)
                      ... +..+....+.++||.++ +| +|+||+++++++++.+...  ...++.+++++.++...++..+- +..+++++++
T Consensus       177 ~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~  253 (330)
T TIGR01140       177 APQAARFPGLVVLRSLTKFFGLAG-LRLGFVVAHPALLARLREA--LGPWTVNGPARAAGRAALADTAWQAATRARLAAE  253 (330)
T ss_pred             hhHhccCCCEEEEEecchhhcCch-hhhhheeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            111 11122233346999999 89 9999999999988887753  33566777888877777753211 2356777778


Q ss_pred             HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEeccCCCC
Q psy6547         170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNIT  243 (266)
Q Consensus       170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~~~~t  243 (266)
                      ++.+.+.|++ ++.  +.. ..+.|+   |+|+.+++     ..+++++|+++||.+.|+      +.+++|++++  ..
T Consensus       254 ~~~l~~~L~~-~~~--~~~-~~~~~~---f~~~~~~~-----~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~  319 (330)
T TIGR01140       254 RARLAALLAR-LGG--LEV-VGGTAL---FLLVRTPD-----AAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TD  319 (330)
T ss_pred             HHHHHHHHHh-CCC--ceE-CCCCCe---EEEEEcCC-----HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CH
Confidence            8888888877 442  222 234567   88887654     568999999999999985      2368999943  44


Q ss_pred             HHHHHHHHHHH
Q psy6547         244 EQELREGLDII  254 (266)
Q Consensus       244 ~~~i~~~~~~l  254 (266)
                      .++ ++++.+|
T Consensus       320 ~~~-~~~~~~l  329 (330)
T TIGR01140       320 EEN-DRLEEAL  329 (330)
T ss_pred             HHH-HHHHHhh
Confidence            444 7777665

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=1.9e-21  Score=167.11  Aligned_cols=225  Identities=17%  Similarity=0.110  Sum_probs=157.8

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCE-EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~-~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+...+.+++.++.++ +.+.+      .+ .+++++| +|++|.+ ++.+.++++++.|.++++++|+||+|.+|...
T Consensus       108 ~~~~~~g~~~~~v~~~~-~~~~~------~~~~v~l~nP-nNPTG~~-~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~  178 (339)
T PRK06959        108 PAFARHGHRVVPLDEAA-DTLPA------ALTHLIVVNP-NNPTAER-LPAARLLRWHAQLAARGGTLIVDEAFADTLPA  178 (339)
T ss_pred             HHHHHCCCEEEeecccc-hhccc------cCCEEEEeCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc
Confidence            34556677777776543 22211      23 3444555 6888877 89999999999999999999999999877422


Q ss_pred             CcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAY  167 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~  167 (266)
                      ..............+-+|||.++ +| +|+||+++++++++.+...  ...++.+.+++.++.++|+... .+...++++
T Consensus       179 ~s~~~~~~~~~vi~l~SfSK~~gl~G-lRiGy~v~~~~li~~l~~~--~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~  255 (339)
T PRK06959        179 ASLAAHTDRPGLVVLRSVGKFFGLAG-VRAGFVLAAPALLAALRDA--LGAWTVSGPARHAVRAAFADAAWQAAMRERLA  255 (339)
T ss_pred             ccchhccCCCCEEEEecChhhcCCcc-hheEEEecCHHHHHHHHHh--cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            11111111111233445999999 99 9999999999999888753  3356678888888888885322 134567777


Q ss_pred             HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-CCCEEEEeccCCCCHHH
Q psy6547         168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQE  246 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~~t~~~  246 (266)
                      +.++++.+.|++ ++   +.  ....++   |+|+.++     ++.++.+.|.++||.++.. ..+++|++  +..++++
T Consensus       256 ~~r~~l~~~L~~-~g---~~--~~~~~~---f~~~~~~-----~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e  319 (339)
T PRK06959        256 ADGARLAALLRA-HG---FA--VHATPL---FSWTDDP-----RAAALHAALARRGIWTRYFAPPPSVRFG--LPADEAE  319 (339)
T ss_pred             HHHHHHHHHHHH-CC---CC--ccCcce---EEEEeCC-----CHHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHH
Confidence            788888888887 43   22  122356   7788764     3578999999999999865 34799999  4358889


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy6547         247 LREGLDIIINTINTMAA  263 (266)
Q Consensus       247 i~~~~~~l~~~~~~~~~  263 (266)
                      ++++++.|+++++.+..
T Consensus       320 ~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        320 WQRLEDALAECVPTLAA  336 (339)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999998877643

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.88  E-value=1.3e-21  Score=172.93  Aligned_cols=225  Identities=16%  Similarity=0.133  Sum_probs=154.9

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc--cCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH--YEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~--~~~~~~d~  104 (266)
                      |+++|+  +  +++++++++++++|++|.+ ++.+.+++|.++|++||++||+||+|..+..........  ..+....+
T Consensus       170 d~~~l~--~--~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~  244 (416)
T PRK09440        170 DFEHLH--I--DEDTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILC  244 (416)
T ss_pred             CHHHcc--c--CCCceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEE
Confidence            677776  3  3467888877778889987 899999999999999999999999996431110100110  12233445


Q ss_pred             eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHhhc
Q psy6547         105 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~  179 (266)
                      .+|||...+| +|+||+++++++++.+.........+.+.+.+.++..+++.-.-     +.+...++++.+.+++.|.+
T Consensus       245 ~SfSK~~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~  323 (416)
T PRK09440        245 MSLSKLGLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRR  323 (416)
T ss_pred             ecccccCCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699975589 99999999999888877544445566788888888877753111     11334445555666666665


Q ss_pred             ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------------CCEEEEeccCCCCHHH
Q psy6547         180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------------NNIIRLSPALNITEQE  246 (266)
Q Consensus       180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~iR~~~~~~~t~~~  246 (266)
                      .+....+....+..|.   ++|+.++.. ..+..++++.|.++||.++|+.             .+++|++..  .++++
T Consensus       324 ~l~~~~~~~~~p~gg~---fiw~~~~~~-~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~  397 (416)
T PRK09440        324 YLPDEPCLIHKPEGAI---FLWLWFKDL-PITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEE  397 (416)
T ss_pred             hcccCCeEEecCCCce---EEEEECCCC-CCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHH
Confidence            3322122221233577   899988651 1356789999999999999741             248999954  58999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy6547         247 LREGLDIIINTINTMAA  263 (266)
Q Consensus       247 i~~~~~~l~~~~~~~~~  263 (266)
                      +++++++|.+++++...
T Consensus       398 l~~~i~~l~~~~~~~~~  414 (416)
T PRK09440        398 IEKGIAILAEEVEKAYA  414 (416)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999887543

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.88  E-value=3.8e-21  Score=169.57  Aligned_cols=244  Identities=14%  Similarity=0.117  Sum_probs=166.5

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      ++.....+...+.+++.++.+       |+++|++.+.  +++++++++.++|++|.+ ++.+.+++|.++|+++|++||
T Consensus       138 y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~i~~~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii  214 (412)
T PTZ00433        138 FPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD--DRTKALIMTNPSNPCGSN-FSRKHVEDIIRLCEELRLPLI  214 (412)
T ss_pred             cccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc--cCceEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCCeEE
Confidence            333334456667777777642       5788988883  367888887778888876 899999999999999999999


Q ss_pred             EeccccCcCCcCccc-ccccCC---CCcCeeeeccccc-CCchhhhhhee------cHHhhhccCCCCCCCCCCCcHHHH
Q psy6547          79 ADEVQTGLGRTGKLL-AIHYED---VRPDIVILGKALS-GGLYPISAVLA------DDEVMGTLVPGTHGSTYGGNPLAC  147 (266)
Q Consensus        79 ~De~~~~~~~~g~~~-~~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      +||+|.+|...+..+ ......   ....+.+|||.++ +| +|+||+++      .+++.+.+.... ...++.+++.+
T Consensus       215 ~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q  292 (412)
T PTZ00433        215 SDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQ  292 (412)
T ss_pred             EeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHH
Confidence            999998764333221 111111   1122334999996 89 99999986      234555554322 22356788888


Q ss_pred             HHHHHHHHHH-h--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-
Q psy6547         148 KLAMTALDVI-L--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-  220 (266)
Q Consensus       148 ~a~~~~l~~~-~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-  220 (266)
                      .++..+++.. .  -++..++++++++.+.+.|++ ..  .+....+..|+   |+|+.++..   +..+..++++.|+ 
T Consensus       293 ~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~gg~---f~~~~l~~~~~~~~~~~~~~~~~ll~  366 (412)
T PTZ00433        293 AALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE-CI--GLSPTMPRGSM---FLMSRLDLEKFRDIKSDVEFYEKLLE  366 (412)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCcccCCCeeE---EEEEEechhhcCCCCCHHHHHHHHHH
Confidence            8887777531 1  133556667777777777766 21  22221234577   889888641   0124678999987 


Q ss_pred             HCCceeccCC----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         221 DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       221 ~~gi~~~~~~----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++||.+.++.    .+++|++..  ..++++++++++|.+++++..
T Consensus       367 ~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        367 EENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             hcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence            5799999862    579999954  568999999999999987643

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.88  E-value=1.1e-21  Score=168.93  Aligned_cols=233  Identities=21%  Similarity=0.191  Sum_probs=171.6

Q ss_pred             cccccCCCCCCceeecCCC-----H--HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           9 SYNEFGPHMPGYNIIPYND-----V--DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d-----~--~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ........+.+++.++.++     .  +.++...  ++++++++++++++++|.+ ++.+.+++|+++|+++|+++|+|+
T Consensus        96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~  172 (350)
T cd00609          96 YEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAK--TPKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDE  172 (350)
T ss_pred             HHHHHHHCCCEEEEEecccccCCccCHHHHHhhc--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEec
Confidence            3333444556677777652     1  4455444  5578999999988888876 789999999999999999999999


Q ss_pred             cccCcCCcCccc----ccccCCCCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGKLL----AIHYEDVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        82 ~~~~~~~~g~~~----~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      +|+++...+...    .....+.+..+.+++|.++ +| .++|++++++ ++.+.+.......+++.+...+.++..+++
T Consensus       173 a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (350)
T cd00609         173 AYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD  251 (350)
T ss_pred             chhhceeCCcccccccCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHh
Confidence            998765444321    1222333444556999999 88 8999999988 788887765555567778888888888887


Q ss_pred             HH--hhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547         156 VI--LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       156 ~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      ..  ..+...+++.++++++++.|++ .+.... . ....|.   ++++.+..  ..+...+.+.|.++||.+.++    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~-~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~gi~i~~~~~~~  323 (350)
T cd00609         252 DGEEHLEELRERYRRRRDALLEALKE-LGPLVV-V-KPSGGF---FLWLDLPE--GDDEEFLERLLLEAGVVVRPGSAFG  323 (350)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHh-cCCccc-c-CCCccE---EEEEecCC--CChHHHHHHHHHhCCEEEecccccc
Confidence            65  2345778888899999999988 544222 2 335577   88888766  334666777778889999876    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                        ...++|++++..  ++++++++++|+
T Consensus       324 ~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         324 EGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             cCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence              568999998876  999999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.8e-21  Score=171.19  Aligned_cols=223  Identities=15%  Similarity=0.108  Sum_probs=159.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCcCCcCccc-cccc--CC---
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLL-AIHY--ED---   99 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~De~~~~~~~~g~~~-~~~~--~~---   99 (266)
                      |++++++.++  +++++++++.++|++|.+ ++.+.+++++++|++| |+++|+||+|..+...+..+ .+..  .+   
T Consensus       155 ~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~  231 (402)
T PRK06107        155 TPEALEAAIT--PRTRWLILNAPSNPTGAV-YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD  231 (402)
T ss_pred             CHHHHHhhcC--cCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence            5788888883  467777777678888877 8999999999999998 99999999997763333211 1111  11   


Q ss_pred             CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHH
Q psy6547         100 VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSE  176 (266)
Q Consensus       100 ~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~l~~~  176 (266)
                      ....+.++||.++ +| +|+||+++++++.+.+.......+++.+.+.+.++..+|+...  -+...+.++++++.+.+.
T Consensus       232 ~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK06107        232 RVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALAL  310 (402)
T ss_pred             CEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            2233444899998 99 9999999999999888876666677788899998888774211  123455667777777777


Q ss_pred             hhcccccCCCcccEEecCccceeeEEEEeeC------cc---chHHHHHHHH-HHCCceeccC----CCCEEEEeccCCC
Q psy6547         177 LSSPANKSKASFKLSSGGLKKSINTLILSVS------AI---LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNI  242 (266)
Q Consensus       177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~---~~~~~~~~~l-~~~gi~~~~~----~~~~iR~~~~~~~  242 (266)
                      |++ .+.  +....+..|.   ++|+.++..      .+   .+..+++.+| .++||.+.|+    ..+++|++..  .
T Consensus       311 L~~-~~g--~~~~~p~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~  382 (402)
T PRK06107        311 LNA-IPG--LSCLVPDGAF---YLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--T  382 (402)
T ss_pred             Hhc-CCC--CcccCCCcce---EEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--C
Confidence            776 422  2221234566   788876320      01   2456777666 5789999986    2479999955  6


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINTM  261 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++++++++++|.+.++++
T Consensus       383 ~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        383 SLETLEEACARIERAVAAL  401 (402)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            8999999999999988764

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=2.4e-21  Score=167.80  Aligned_cols=229  Identities=13%  Similarity=0.115  Sum_probs=160.2

Q ss_pred             cccCCCCCCceeecCC-----CH-HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          11 NEFGPHMPGYNIIPYN-----DV-DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~-~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ..+...+.+++.++..     ++ +++.+.+  .+++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|.
T Consensus       109 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~~~~k~v~l~~p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~  185 (356)
T PRK08056        109 RALQQVGCEIRRYSLREADGWQLTDAILEAL--TPDLDCLFLCTPNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFI  185 (356)
T ss_pred             HHHHHcCCeEEEEecccccCCCccHHHHHhc--cCCCCEEEEeCCcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchh
Confidence            3345667788888753     12 2444555  3568888888889999986 899999999999999999999999998


Q ss_pred             CcCCcCccc--ccccCCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547          85 GLGRTGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E  159 (266)
Q Consensus        85 ~~~~~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~  159 (266)
                      +|...+..+  .....+....+.++||+++ +| +|+||+++ ++++++.+..  ....++.+.+++.++..+++.-. .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~--~~~~~~~~~~~~~~a~~~l~~~~~~  262 (356)
T PRK08056        186 DFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRR--QQMPWSINAFAALAGEVILQDRAYQ  262 (356)
T ss_pred             ccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCHHHH
Confidence            874433211  1222233344556999999 99 99999998 4566666653  23445667777777776664211 1


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNI  233 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~  233 (266)
                      ....+.++++++.+.+.|++ +..  +.. .++.|.   ++|+.++.    +..+++++|+++||.++++.      .++
T Consensus       263 ~~~~~~~~~~r~~l~~~L~~-~~~--~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~gI~v~~~~~f~~~~~~~  331 (356)
T PRK08056        263 QATWQWLAEEGARFYQALCA-LPL--LTV-WPGRAN---YLFLRCER----PDIDLQRALLTQRILIRSCANYPGLDSRY  331 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCC--cEE-cCCCCc---EEEEEcCC----ChHHHHHHHHHCCeEEEECCCCCCCCCCE
Confidence            23456677777888888876 432  222 233567   88888865    35689999999999998652      368


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +|+++   .++++.+.+++.|+++++
T Consensus       332 iRis~---~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        332 YRVAI---RSAAENERLLAALRNVLT  354 (356)
T ss_pred             EEEEE---cCHHHHHHHHHHHHHHHc
Confidence            99993   377889999999987754

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.88  E-value=7.8e-22  Score=170.87  Aligned_cols=220  Identities=14%  Similarity=0.106  Sum_probs=152.4

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ...++.+++.+  +++++++     .++++++++++++|++|.+ ++.+.+++|.++|++||+++|+||+|.++...+..
T Consensus       122 ~~~~g~~~~~v--~~~~~l~-----~~~~~~v~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~  193 (357)
T TIGR03539       122 ALLAGATPVAA--DDPTELD-----PVGPDLIWLNSPGNPTGRV-LSVDELRAIVAWARERGAVVASDECYLELGWEGRP  193 (357)
T ss_pred             HHhcCCEEecc--CChhhcC-----ccCccEEEEeCCCCCcCcc-CCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC
Confidence            34445555554  3443322     2367899988888889987 89999999999999999999999999776543322


Q ss_pred             cc-ccc------CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHH
Q psy6547          93 LA-IHY------EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMI  163 (266)
Q Consensus        93 ~~-~~~------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~  163 (266)
                      .. +..      ......+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+|+... -+...
T Consensus       194 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  272 (357)
T TIGR03539       194 VSILDPRVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQK  272 (357)
T ss_pred             ccceecccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHH
Confidence            11 110      111233345999996 88 9999999999888877654444556678888888877774311 12345


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEe
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLS  237 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~  237 (266)
                      .+++++++.+.+.|++ .+   +.......|.   ++|+.++.    +..++.++|.++||.+.|+      +.+++|++
T Consensus       273 ~~~~~~~~~~~~~L~~-~g---~~~~~p~~~~---~~~~~~~~----~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis  341 (357)
T TIGR03539       273 ARYAARRAQLKPALEK-AG---FRIDHSEAGL---YLWATRGE----DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVA  341 (357)
T ss_pred             HHHHHHHHHHHHHHHH-cC---CCCcCCCccE---EEEEECCC----CHHHHHHHHHhCCEEECCccccCCCCCCeEEEE
Confidence            6666777777777776 43   2221223455   67777654    5678999999999999885      24799999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDII  254 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l  254 (266)
                      ..  .+++++++++++|
T Consensus       342 ~~--~~~~~i~~~~~~l  356 (357)
T TIGR03539       342 LT--ATDERIAAAVARL  356 (357)
T ss_pred             ec--CCHHHHHHHHHhh
Confidence            54  4789999998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.88  E-value=2.8e-21  Score=173.24  Aligned_cols=245  Identities=16%  Similarity=0.129  Sum_probs=162.6

Q ss_pred             CCcCcccccC-CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547           5 TDPTSYNEFG-PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ   72 (266)
Q Consensus         5 ~~~~~~~~~~-~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~   72 (266)
                      .+|.+...+. -.+.+++.++..       |+++++..+++    ..++++++++.++|++|.+ ++.+.+++|.++|++
T Consensus       152 ~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~-~s~e~l~~L~~~a~~  230 (496)
T PLN02376        152 YYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTM-LDKDTLTNLVRFVTR  230 (496)
T ss_pred             CccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCcc-CCHHHHHHHHHHHHH
Confidence            4455544454 367888888862       57888766432    3478888888788889987 999999999999999


Q ss_pred             cCCEEEEeccccCcCCcCccc-ccccC----C---CCcC----eeeeccccc-CCchhhhhheec-HHhhhccCCCCCCC
Q psy6547          73 YNVLFIADEVQTGLGRTGKLL-AIHYE----D---VRPD----IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGS  138 (266)
Q Consensus        73 ~g~~li~De~~~~~~~~g~~~-~~~~~----~---~~~d----~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~  138 (266)
                      ||++||+||+|.++...+..+ +....    .   ..++    +.+|||.++ +| +|+||++++ +.+.+.+..  ...
T Consensus       231 ~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~~~~--~~~  307 (496)
T PLN02376        231 KNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSCARK--MSS  307 (496)
T ss_pred             cCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHHHHH--Hhh
Confidence            999999999998753333222 11100    1   1122    345999998 99 999999984 555444432  122


Q ss_pred             CCCCcHHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----c
Q psy6547         139 TYGGNPLACKLAMTALDVILE-E----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----I  209 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~-~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~  209 (266)
                      ....+.+.+.++...|+.-.- +    ..+++++++.+.+.+.|++ .+   +.......|+   |+|++++...    .
T Consensus       308 ~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~-~g---i~~~~~~aG~---flwi~l~~~~~~~~~  380 (496)
T PLN02376        308 FGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK-AD---IACLTSNAGL---FAWMDLRHLLRDRNS  380 (496)
T ss_pred             cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCceE---EEEEEchhhhccCCc
Confidence            223567777777766643111 1    1244455566666666665 32   3221234578   9999986410    1


Q ss_pred             -chHHHHHHHHHH-CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 -LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 -~~~~~~~~~l~~-~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                       .+..++.++|.+ .||.+.|+      .++++|++... .+++++++++++|.+++.+.
T Consensus       381 ~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~  439 (496)
T PLN02376        381 FESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSKN  439 (496)
T ss_pred             hhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHh
Confidence             123678888876 59999986      25799999543 47899999999999998654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=4e-21  Score=167.10  Aligned_cols=225  Identities=18%  Similarity=0.174  Sum_probs=160.3

Q ss_pred             CCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          15 PHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        15 ~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      ..+.+++.++.+    |++++++.+  ++++++++++.++|++|.+ ++.+.++++++.|+ +|+++|+||+|.++...+
T Consensus       127 ~~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~  202 (367)
T PRK02731        127 AVGAKPVEVPAKDYGHDLDAMLAAV--TPRTRLVFIANPNNPTGTY-LPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRK  202 (367)
T ss_pred             HcCCeEEEecccCCCCCHHHHHHHh--CCCCcEEEEeCCCCCCCcC-CCHHHHHHHHHhCC-CCcEEEEECcHHHhccCc
Confidence            346677777643    789999988  3467888888888889987 77777777777664 599999999997664322


Q ss_pred             c-ccccccCCCCcCe---eeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHH
Q psy6547          91 K-LLAIHYEDVRPDI---VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIE  164 (266)
Q Consensus        91 ~-~~~~~~~~~~~d~---~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~  164 (266)
                      . .......+...++   .++||.++ +| +|+||+++++++.+.+....  ..+..+++++.++..+++... -++..+
T Consensus       203 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~  279 (367)
T PRK02731        203 DYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRA  279 (367)
T ss_pred             CcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            1 1111111222333   35999998 88 99999999999888776432  345667888888877775321 134556


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccC
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPAL  240 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~  240 (266)
                      +++++.+.+.+.|++ .+   +.. .++.|.   ++|+.++.  ..++.+++++|.++||.++++.    .+++|++++ 
T Consensus       280 ~~~~~~~~l~~~L~~-~g---~~~-~~~~g~---~~~i~~~~--~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~-  348 (367)
T PRK02731        280 LNAEGMAWLTEFLAE-LG---LEY-IPSVGN---FILVDFDD--GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG-  348 (367)
T ss_pred             HHHHHHHHHHHHHHH-CC---Ccc-CCCCce---EEEEECCC--CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-
Confidence            666777777777776 43   222 223466   99999865  4578899999999999999763    478999943 


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTIN  259 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~  259 (266)
                        +.++++++++.|+++++
T Consensus       349 --~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        349 --TEEENRRFLAALKEFLA  365 (367)
T ss_pred             --CHHHHHHHHHHHHHHHh
Confidence              78899999999988764

>PRK06855 aminotransferase; Validated

Probab=99.88  E-value=3.9e-21  Score=170.38  Aligned_cols=226  Identities=15%  Similarity=0.185  Sum_probs=152.6

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-ccc-c--cCCCCc
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAI-H--YEDVRP  102 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~-~--~~~~~~  102 (266)
                      |+++|++.+++++++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.++...+.. .++ .  ..+...
T Consensus       158 d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I  236 (433)
T PRK06855        158 DLDDLENKVKYNPSIAGILLINPDNPTGAV-YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI  236 (433)
T ss_pred             CHHHHHHHHhcCCCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeE
Confidence            789999999654566777766668888886 99999999999999999999999999887443421 111 1  111234


Q ss_pred             Ceeeeccccc-CCchhhhhheec-----H---HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--h--ccHHHHHHHH
Q psy6547         103 DIVILGKALS-GGLYPISAVLAD-----D---EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E--ENMIENAYKM  169 (266)
Q Consensus       103 d~~~~sK~~~-~g~~~~g~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~--~~~~~~~~~~  169 (266)
                      .+.+|||.++ +| +|+||++++     +   .+++.+..... ...+++.+.+.++..+++.-.  .  ++..+.++++
T Consensus       237 ~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r  314 (433)
T PRK06855        237 ALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKR  314 (433)
T ss_pred             EEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence            4556999997 99 999999972     2   23333322222 234567788888877774311  1  2345556666


Q ss_pred             HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-------c------------------chHHHHHHH-HHHCC
Q psy6547         170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-------I------------------LEVYDVCIK-MKDAG  223 (266)
Q Consensus       170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~------------------~~~~~~~~~-l~~~g  223 (266)
                      ++.+.+.|.+ +.  .+....+..|.   ++|+.+++..       .                  .+..+++.. +.++|
T Consensus       315 ~~~~~~~L~~-~~--~~~~~~p~gg~---~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  388 (433)
T PRK06855        315 SNIAYEKLKD-VP--GLKVNRTNGAF---YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTG  388 (433)
T ss_pred             HHHHHHHHhc-CC--CeeccCCCeeE---EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcC
Confidence            6667777765 32  22221334567   8999887520       0                  124566755 55789


Q ss_pred             ceeccCC-----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         224 LVTKPIS-----NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       224 i~~~~~~-----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      |.+.|+.     .+.+|++... .+++++++++++|.+++.+..
T Consensus       389 V~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~~  431 (433)
T PRK06855        389 ICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEYL  431 (433)
T ss_pred             EEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHHh
Confidence            9999862     2469999654 489999999999999987643

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.88  E-value=2.2e-20  Score=162.26  Aligned_cols=234  Identities=13%  Similarity=0.097  Sum_probs=169.6

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ..++.+++.++.+     |+++++++++++++++++.+..+.+++|.+.    ++++|.++|++||+++++|++|+ ++.
T Consensus        98 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~----~i~~I~~l~~~~g~~livD~~~~-~g~  172 (363)
T TIGR02326        98 EYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILN----PIEAVAKLAHRHGKVTIVDAMSS-FGG  172 (363)
T ss_pred             HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccC----cHHHHHHHHHHcCCEEEEEcccc-ccC
Confidence            3456777877754     7899999997655677777787888899986    78999999999999999999884 432


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC------------------CCCCCCCCcHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG------------------THGSTYGGNPLACKLA  150 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~a~  150 (266)
                        .++....++.+..+.+++|+++++ .++|+++++++.++.+...                  .....|+.+...+.+.
T Consensus       173 --~~~~~~~~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al  249 (363)
T TIGR02326       173 --IPIDIAELHIDYLISSANKCIQGV-PGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAF  249 (363)
T ss_pred             --cccchhhcCccEEEecCccccccC-CcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHH
Confidence              234445555555555588999866 5689999998877654321                  0113456677777777


Q ss_pred             HHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         151 MTALDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       151 ~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      .++++.+..+    +..++++++++++++.|++ ++...+.......+.   +.++.+++....+..++.+.|.++||.+
T Consensus       250 ~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~L~~~gi~v  325 (363)
T TIGR02326       250 AQALLELEKEGGVAARHQRYQQNQKTLVAGMRA-LGFEPLLDDEIQSPI---ITSFYSPEDPDYRFADFYQRLKEQGFVI  325 (363)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-cCCeeccCcccCCce---EEEEECCCCCCCCHHHHHHHHHHCCEEE
Confidence            7888776443    4678888999999999987 554332210112334   5677776521246678999999999999


Q ss_pred             ccCC---CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         227 KPIS---NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       227 ~~~~---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +++.   .+++|++++..++.+++++++++|++++.
T Consensus       326 ~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       326 YPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             ECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            8763   47899998778899999999999998763

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.88  E-value=4e-21  Score=159.59  Aligned_cols=245  Identities=17%  Similarity=0.174  Sum_probs=174.8

Q ss_pred             CcCcccccCCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ||.+.+...-.+.+++..|--        |.++||+.++ +++++++++.++||++|.+ ++.+.|++|.++|.+||+.|
T Consensus       117 Y~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~-~~~vkl~iLCnPHNP~Grv-wt~eeL~~i~elc~kh~v~V  194 (388)
T COG1168         117 YPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFV-DERVKLFILCNPHNPTGRV-WTKEELRKIAELCLRHGVRV  194 (388)
T ss_pred             chHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHh-cCCccEEEEeCCCCCCCcc-ccHHHHHHHHHHHHHcCCEE
Confidence            344444445556667766532        8999999995 4467899988899999977 99999999999999999999


Q ss_pred             EEeccccCcCCcC-cccccccCC-----CCcCeeeeccccc-CCchhhhhhee-cHHhhhc-cCCCCCCCCCCCcHHHHH
Q psy6547          78 IADEVQTGLGRTG-KLLAIHYED-----VRPDIVILGKALS-GGLYPISAVLA-DDEVMGT-LVPGTHGSTYGGNPLACK  148 (266)
Q Consensus        78 i~De~~~~~~~~g-~~~~~~~~~-----~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  148 (266)
                      |.||+|.++-..| .++.+....     ....+.+-||+|+ +| +..+.++. ++++.++ ++.........+|.+++.
T Consensus       195 ISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~  273 (388)
T COG1168         195 ISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGII  273 (388)
T ss_pred             EeecccccccccCCCccchhhcChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHH
Confidence            9999999875555 333322111     1222333689999 88 88887665 4444333 233334555667889999


Q ss_pred             HHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cce
Q psy6547         149 LAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLV  225 (266)
Q Consensus       149 a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~  225 (266)
                      |..++.+.-+.  +++.+.++++.+++.+.+.+.+++  +.. ....|.  =..|+++..- +.+..++.+.|+++ +|.
T Consensus       274 A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~--v~v-~~p~gT--YL~WLD~r~l-~l~d~~l~~~ll~~akVa  347 (388)
T COG1168         274 ATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPG--VKV-TEPQGT--YLAWLDCREL-GLDDSELAEFLLEEAKVA  347 (388)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCC--cEE-ecCCCc--eeeeeecccc-CCChHHHHHHHHHhhcEe
Confidence            98888876444  567888888999999988884443  332 223343  0477887763 34557888888754 777


Q ss_pred             eccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         226 TKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       226 ~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.++      +.+++|+.  ++++++.+++++++|..++++.
T Consensus       348 l~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         348 LSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRALKKR  387 (388)
T ss_pred             ccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHHhcc
Confidence            7654      56899999  8899999999999999988753

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=4.2e-21  Score=166.06  Aligned_cols=231  Identities=12%  Similarity=0.107  Sum_probs=160.3

Q ss_pred             cCcccccCCCCCCceeecCCC-----H-HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547           7 PTSYNEFGPHMPGYNIIPYND-----V-DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d-----~-~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      +.....+...+.+++.++.++     + +++.+.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+|
T Consensus       104 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~v~~~~P~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~D  180 (354)
T PRK06358        104 AEYERALKAFDAEIEYAELTEETNFAANEIVLEEI--KEEIDLVFLCNPNNPTGQL-ISKEEMKKILDKCEKRNIYLIID  180 (354)
T ss_pred             HHHHHHHHHcCCeeEEEeCccccCCCccHHHHHhh--ccCCCEEEEeCCCCCCCCc-cCHHHHHHHHHHHHhcCCEEEEe
Confidence            333444555677777776431     2 3344444  2346777655558888877 89999999999999999999999


Q ss_pred             ccccCcCCcCcccc----cccCCCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          81 EVQTGLGRTGKLLA----IHYEDVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        81 e~~~~~~~~g~~~~----~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      |+|.+|...+....    .+.......+.+|||.++ +| +|+||++++ +.+.+.+....  ..++.+.+++.++..++
T Consensus       181 e~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l  257 (354)
T PRK06358        181 EAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLL  257 (354)
T ss_pred             CcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHh
Confidence            99988754332111    111222344555999999 99 999999874 56666665432  35677888888888877


Q ss_pred             HHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547         155 DVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      +.-.- ++..+.++++++.+.+.|++ ++  .+.. ..+.|.   |+|+.+++     ..+++++|.++||.++++    
T Consensus       258 ~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~~~~g~---f~~~~~~~-----~~~~~~~l~~~gI~v~~~~~f~  325 (354)
T PRK06358        258 DDKEYIKKTIQWIKEEKDFLYNGLSE-FK--GIKV-YKPSVN---FIFFKLEK-----PIDLRKELLKKGILIRSCSNYR  325 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEE-cCCcce---EEEEEcCc-----hHHHHHHHHHCCeEEEECCCCC
Confidence            53211 33556667777888888876 42  2222 234566   89988865     368999999999999975    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                        +.+++|++   ..++++.+++++.|++++
T Consensus       326 ~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        326 GLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             CCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence              23689999   558899999999998765

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.87  E-value=1.9e-21  Score=171.15  Aligned_cols=237  Identities=14%  Similarity=0.098  Sum_probs=161.7

Q ss_pred             CCcCcccccCCCCCCceeecC---C----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPY---N----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~---~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      ++|.....+.-.+.+++.++.   +    |++++++.+++. ++.+++++++++||+|.+ ++.+.+++|.++|++||++
T Consensus       133 ~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~  211 (404)
T PTZ00376        133 TWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVD-PTEEQWKEIADVMKRKNLI  211 (404)
T ss_pred             CchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcE
Confidence            444555556777888888886   2    689999998653 345677777789989987 8999999999999999999


Q ss_pred             EEEeccccCcCCcCc---c---ccccc-CCCCcCeeeeccccc-CCchhhhhh---eecHHhhhccC----CCCCCCCCC
Q psy6547          77 FIADEVQTGLGRTGK---L---LAIHY-EDVRPDIVILGKALS-GGLYPISAV---LADDEVMGTLV----PGTHGSTYG  141 (266)
Q Consensus        77 li~De~~~~~~~~g~---~---~~~~~-~~~~~d~~~~sK~~~-~g~~~~g~~---~~~~~~~~~~~----~~~~~~~~~  141 (266)
                      ||+||+|.+|...+.   .   ..+.. ......+.+|||.++ +| +|+||+   ++++++.+.+.    ........+
T Consensus       212 ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  290 (404)
T PTZ00376        212 PFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSS  290 (404)
T ss_pred             EEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Confidence            999999987744321   1   11111 112345566999999 99 999998   56776544332    111122223


Q ss_pred             CcHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchH
Q psy6547         142 GNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      .+++++.++..+++...        ..+..++++++++.+.+.|++ .+.. .+....+..|.   ++|+.+.       
T Consensus       291 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~p~gg~---f~~~~~~-------  359 (404)
T PTZ00376        291 PPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA-LGSPGDWEHIINQIGM---FSFTGLT-------  359 (404)
T ss_pred             CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCceE---EEecCCC-------
Confidence            46677888877775321        123445677888888888887 4321 12211234466   6776552       


Q ss_pred             HHHHHHHHHC-CceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDA-GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       213 ~~~~~~l~~~-gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+++++|.++ ||.+.|++    |++.+. .+++++++++++|++++.
T Consensus       360 ~~~~~~L~~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        360 KEQVERLIEKYHIYLLDNG----RISVAG-LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             HHHHHHHHHhCCEeecCCC----eEEEec-cCHHhHHHHHHHHHHHHh
Confidence            4688888866 99999873    998532 799999999999998865

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.87  E-value=6.6e-21  Score=168.98  Aligned_cols=244  Identities=17%  Similarity=0.112  Sum_probs=159.8

Q ss_pred             CcCcccccC-CCCCCceeecC-------CCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547           6 DPTSYNEFG-PHMPGYNIIPY-------NDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         6 ~~~~~~~~~-~~~~~v~~~~~-------~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      +|.+...+. -.+.+++.|+.       .|++++++++++    ..+++++++..++|++|.+ ++++.+++|.++|++|
T Consensus       154 Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~-~s~e~l~~l~~~~~~~  232 (447)
T PLN02607        154 YPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGAT-VQRSVLEDILDFVVRK  232 (447)
T ss_pred             CcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHC
Confidence            344433343 34566777764       268899988854    2378888888788888877 9999999999999999


Q ss_pred             CCEEEEeccccCcCCcCcccc-c-c---cC------CCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCC
Q psy6547          74 NVLFIADEVQTGLGRTGKLLA-I-H---YE------DVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTY  140 (266)
Q Consensus        74 g~~li~De~~~~~~~~g~~~~-~-~---~~------~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~  140 (266)
                      |+++|+||+|.++-..+..|. . .   ..      +....+.++||.|+ +| +|+||+++ ++.+.+.+...  ....
T Consensus       233 ~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~--~~~~  309 (447)
T PLN02607        233 NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--SSFT  309 (447)
T ss_pred             CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHH--hhcC
Confidence            999999999976422222121 1 0   11      11223445999999 99 99999998 56665555432  1111


Q ss_pred             CCcHHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----cch
Q psy6547         141 GGNPLACKLAMTALDVIL---E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----ILE  211 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~  211 (266)
                      ..+.+++.++...|+.-.   .  ...++++++..+.+.+.|++ .   .+.......|+   |+|+.++...    ...
T Consensus       310 ~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~-~---gi~~~~~~ag~---fvw~~L~~~~~~~~~~~  382 (447)
T PLN02607        310 LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR-A---GIECLKGNAGL---FCWMNLSPLLETPTREG  382 (447)
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C---CCCcccCCeeE---EEEEEchHhhcCCCchh
Confidence            346667776666654211   0  12344455555566666665 3   23331234578   9999986410    012


Q ss_pred             HHHHHHHHHH-CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         212 VYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       212 ~~~~~~~l~~-~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..++.++|++ +||.+.|+      .++++|++... .++++++++++||.+++++.
T Consensus       383 e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~  438 (447)
T PLN02607        383 ELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRR  438 (447)
T ss_pred             HHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence            3467777765 69999986      25899999442 37999999999999998765

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.87  E-value=2.3e-21  Score=168.22  Aligned_cols=219  Identities=15%  Similarity=0.135  Sum_probs=147.9

Q ss_pred             CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.     .|++++++.+  .+++++++++.++|++|.+.    +.+++.++|+++|+++|+||+|.+|..
T Consensus       129 ~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~~~~p~nptG~~~----~~~~l~~l~~~~~~~li~De~y~~~~~  202 (361)
T PRK00950        129 KAHGAKPVYAKREEDFSLDVDSVLNAI--TEKTKVIFLCTPNNPTGNLI----PEEDIRKILESTDALVFVDEAYVEFAE  202 (361)
T ss_pred             HHcCCEEEEeecCCCCCcCHHHHHHHh--ccCCCEEEEeCCCCCCCCCc----CHHHHHHHHHHCCcEEEEECchhhhCc
Confidence            345666676652     2588888888  34577888777788899886    666778888899999999999987741


Q ss_pred             cCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          89 TGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        89 ~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                       +.... ....+....+.+|||.++ +| +|+||+++++++.+.+...  ...+..+++++.++..+++.   .++.++.
T Consensus       203 -~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~---~~~~~~~  275 (361)
T PRK00950        203 -YDYTPLALEYDNLIIGRTFSKVFGLAG-LRIGYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALSD---KEYIEKS  275 (361)
T ss_pred             -cchHHHHHhcCCEEEEEeehHhhcCch-hhcchhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcC---HHHHHHH
Confidence             11111 112222334456999998 89 9999999999988777642  33455677787777777642   2223333


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEeccC
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPAL  240 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~~  240 (266)
                      .+..+..++.+.+.+.   +.. .+..|.   ++|+.+ +  +.++.++++.|.++||.++++      +.+++|++++ 
T Consensus       276 ~~~~~~~r~~l~~~l~---~~~-~~~~~~---~i~~~~-~--~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-  344 (361)
T PRK00950        276 IEHGIKSREYLYNELP---FKV-YPSEAN---FVLVDV-T--PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-  344 (361)
T ss_pred             HHHHHHHHHHHHhhcC---eeE-CCCcce---EEEEEC-C--CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-
Confidence            3323333333332122   111 223456   899888 3  357889999999999999874      2468999944 


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTI  258 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~  258 (266)
                        +.++++++++.|++++
T Consensus       345 --~~~~~~~l~~~L~~il  360 (361)
T PRK00950        345 --TFEENERFLEILKEIV  360 (361)
T ss_pred             --CHHHHHHHHHHHHHHh
Confidence              7889999999998865

>PRK05839 hypothetical protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=169.59  Aligned_cols=227  Identities=13%  Similarity=0.037  Sum_probs=152.0

Q ss_pred             cccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547           9 SYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      +...+...+.+++.++.+     +++..+..+   +++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|
T Consensus       122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~---~~~k~v~i~nP~NPTG~~-~s~~~l~~i~~~~~~~~~~ii~DE~Y  197 (374)
T PRK05839        122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKEL---QEVDLVILNSPNNPTGRT-LSLEELIEWVKLALKHDFILINDECY  197 (374)
T ss_pred             hHHHHHhcCCEEEEeecccccCCcCCcchhhh---ccccEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHcCCEEEeccch
Confidence            344455667788888753     122222223   257888888788889987 89999999999999999999999999


Q ss_pred             cCcCCcCccccc-c--------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          84 TGLGRTGKLLAI-H--------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        84 ~~~~~~g~~~~~-~--------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      .++...+...+. .        .++....+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+
T Consensus       198 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  276 (374)
T PRK05839        198 SEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVA  276 (374)
T ss_pred             hhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Confidence            876322221111 1        1123344555999987 89 99999999998888776543334455666677776655


Q ss_pred             HHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC--
Q psy6547         154 LDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI--  229 (266)
Q Consensus       154 l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--  229 (266)
                      +..-. -+.+.++++++++.+.+.|    +..     .+..|.   ++|+.+++     ..+++++|++ +||.+.|+  
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~l----~~~-----~p~gg~---fi~~~~~~-----~~~~~~~l~~~~gi~v~pg~~  339 (374)
T PRK05839        277 WLDDEHAEFFRNIYAKNLKLAREIL----GIT-----IPPATF---YVWLPVDN-----DEEFTKKLYQNEGIKVLPGSF  339 (374)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHhc----CCC-----CCCeeE---EEEEeCCC-----hHHHHHHHHHHCCEEEeCchh
Confidence            53200 0123444444444443332    211     233577   89988864     4678889874 99999985  


Q ss_pred             ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 ------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                            ..+++|++.  ..+++++++++++|.++++
T Consensus       340 f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        340 LGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             hCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence                  147999995  4579999999999998874

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.87  E-value=3.9e-21  Score=173.91  Aligned_cols=243  Identities=14%  Similarity=0.126  Sum_probs=156.2

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      +|.........+.+++.++.       .|++++++.+  .+++++++++.++|++|.+ ++.+.+++|+++|++||++||
T Consensus       242 y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~--~~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii  318 (517)
T PRK13355        242 YPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKI--TSRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIF  318 (517)
T ss_pred             CcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhc--CcCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEE
Confidence            33333334455667777653       3789999988  4567888877778889987 899999999999999999999


Q ss_pred             EeccccCcCCcCcc-cccccC--CC-CcCeeeeccccc-CCchhhhhheec--HHh----hhccCCCCCCCCCCCcHHHH
Q psy6547          79 ADEVQTGLGRTGKL-LAIHYE--DV-RPDIVILGKALS-GGLYPISAVLAD--DEV----MGTLVPGTHGSTYGGNPLAC  147 (266)
Q Consensus        79 ~De~~~~~~~~g~~-~~~~~~--~~-~~d~~~~sK~~~-~g~~~~g~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~  147 (266)
                      +||+|..|...+.. .+....  +. ...+.+|||.++ +| +|+||++++  +++    .+.+.. .....++.+.+++
T Consensus       319 ~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q  396 (517)
T PRK13355        319 SDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNM-LANMRLCSNVPAQ  396 (517)
T ss_pred             EehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHH-HhcCcCCcChHHH
Confidence            99999876433321 111111  11 112244899987 89 999999853  432    333321 1222345677788


Q ss_pred             HHHHHHHHHHhh-ccHH---HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHH-HHH
Q psy6547         148 KLAMTALDVILE-ENMI---ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCI-KMK  220 (266)
Q Consensus       148 ~a~~~~l~~~~~-~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~-~l~  220 (266)
                      .++..+|+.... +++.   .++.++++++.+.|++ +.  .+....+..++   ++|+.++...  ..+..+++. .|.
T Consensus       397 ~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--g~~~~~p~g~f---y~~~~l~~~~~~~~~~~~~~~~ll~  470 (517)
T PRK13355        397 SIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNA-IP--GISAVKPKAAF---YIFPKIDVKKFNIHDDEQFALDLLH  470 (517)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcccCCCCeee---EEEeecCcccCCCCCHHHHHHHHHH
Confidence            888877742110 1111   2334456777777776 42  23321233455   5666665310  013445554 567


Q ss_pred             HCCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++||.+.|+      ..+++|++.  ..+++++++++++|.+++++.
T Consensus       471 ~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~  515 (517)
T PRK13355        471 DKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYY  515 (517)
T ss_pred             hCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence            889999875      357999994  579999999999999998754

>PLN02721 threonine aldolase

Probab=99.87  E-value=8e-21  Score=164.24  Aligned_cols=234  Identities=15%  Similarity=0.178  Sum_probs=152.2

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      .+.+++.++.     .|++++++.+++.     +++++++++++++++|+..++.+++++|.++|++||+++|+||+|. 
T Consensus       103 ~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-  181 (353)
T PLN02721        103 GGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-  181 (353)
T ss_pred             cCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-
Confidence            4556777764     3799999999642     5789999988776665555899999999999999999999999984 


Q ss_pred             cCC---cCcccccccCCCCcCeeeecccccCCchhhhh-heecHHhhhccCCCCCCCCCCCcHH--HHHHHHHHHHHHhh
Q psy6547          86 LGR---TGKLLAIHYEDVRPDIVILGKALSGGLYPISA-VLADDEVMGTLVPGTHGSTYGGNPL--ACKLAMTALDVILE  159 (266)
Q Consensus        86 ~~~---~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~l~~~~~  159 (266)
                      ++.   .+........+.+.-+.++||++++.   +|+ +++++++++.+.........+.+..  .++++..+++... 
T Consensus       182 ~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  257 (353)
T PLN02721        182 FNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENV-  257 (353)
T ss_pred             hcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHH-
Confidence            211   11110100113333355699999743   554 6678887766443211111111112  2223333343221 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                       +..++..++.+.+.+.|++ +....+.. ....+.   ++++.++...+.+..+++++|.++||.+++.+.+++|++++
T Consensus       258 -~~~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~  331 (353)
T PLN02721        258 -PKLEDDHKKAKLLAEGLNQ-IKGLRVNV-AAVETN---IVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTH  331 (353)
T ss_pred             -HHHHHHHHHHHHHHHHHHh-CCCcEEec-CCccce---EEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEec
Confidence             1234445667788888877 43211111 112344   88888865112467889999999999999998899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +.++++++++++++|++++..
T Consensus       332 ~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        332 HQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             CcCCHHHHHHHHHHHHHHhhc
Confidence            899999999999999987653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.87  E-value=6.1e-21  Score=167.84  Aligned_cols=235  Identities=17%  Similarity=0.159  Sum_probs=160.5

Q ss_pred             CCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          14 GPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ...+.+++.++.       .|++++++++  .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|
T Consensus       138 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~  214 (403)
T TIGR01265       138 AFSGLEVRLYDLLPEKDWEIDLDGLEALA--DEKTVAIVVINPSNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHM  214 (403)
T ss_pred             HHcCCEEEEecCCcccCCccCHHHHHHHh--CcCccEEEEecCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence            344666666653       2688998888  4457778877778888876 89999999999999999999999999887


Q ss_pred             CCcCccc-ccccCC---CCcCeeeeccccc-CCchhhhhheecH--H-----hhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          87 GRTGKLL-AIHYED---VRPDIVILGKALS-GGLYPISAVLADD--E-----VMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        87 ~~~g~~~-~~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      ...+..+ ......   ....+.+|||.++ +| +|+||++++.  +     +.+.+.... ..++..+.+.+.++..++
T Consensus       215 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l  292 (403)
T TIGR01265       215 VFGDAPFIPMASFASIVPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDIL  292 (403)
T ss_pred             ccCCCCccchhhhccCCcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHH
Confidence            5444221 211111   1233445999976 88 9999998742  2     333333221 123456788888888877


Q ss_pred             HHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHH-HHCCceec
Q psy6547         155 DVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKM-KDAGLVTK  227 (266)
Q Consensus       155 ~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l-~~~gi~~~  227 (266)
                      +....   ++.+++++++++.+.+.|+. ..  .+....+..|+   ++|+.++...   ..+..+++.+| .++||.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~  366 (403)
T TIGR01265       293 ENTPQEFFDGKISVLKSNAELCYEELKD-IP--GLVCPKPEGAM---YLMVKLELELFPEIKDDVDFCEKLVREESVICL  366 (403)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCcee---EEEEeccccccCCCCCHHHHHHHHHHhCCEEEe
Confidence            64111   23556666777777777776 32  22221234577   9999987520   12567888886 57899999


Q ss_pred             cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |+    ..+++|++..  .+++++++++++|.++++++
T Consensus       367 pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       367 PGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCERH  402 (403)
T ss_pred             CccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence            86    3589999955  57899999999999988764

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.87  E-value=3e-21  Score=169.73  Aligned_cols=226  Identities=13%  Similarity=0.077  Sum_probs=149.7

Q ss_pred             CceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccc-
Q psy6547          19 GYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIH-   96 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~-   96 (266)
                      +++.++.+.-+.+...+.+.+++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|...+. ..... 
T Consensus       152 ~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  230 (402)
T TIGR03542       152 KITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTV-LTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFE  230 (402)
T ss_pred             eEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhh
Confidence            66666653211121112122467888888888888987 9999999999999999999999999987743222 11111 


Q ss_pred             cC---CCCcCeeeeccccc-CCchhhhhheecHHhh--------hccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hcc
Q psy6547          97 YE---DVRPDIVILGKALS-GGLYPISAVLADDEVM--------GTLVPGTHGSTYGGNPLACKLAMTALDVIL---EEN  161 (266)
Q Consensus        97 ~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~  161 (266)
                      ..   +....+.+|||.++ +| +|+||++++++++        +...........+.+.+++.++..+++.-.   ..+
T Consensus       231 ~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~  309 (402)
T TIGR03542       231 IPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILE  309 (402)
T ss_pred             CCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHH
Confidence            11   12334556999997 99 9999999998875        111111112223467778777766664211   112


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CCCEE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SNNII  234 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~i  234 (266)
                      ..+.++++++.+.+.|++ .+   +.......|.   ++|+.++.  ..+..+++++|+ ++||.+.|+      +.+++
T Consensus       310 ~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---f~~v~l~~--~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~i  380 (402)
T TIGR03542       310 AISYYMENARILRKALEA-AG---FKVYGGEHAP---YLWVKTPE--GISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFV  380 (402)
T ss_pred             HHHHHHHHHHHHHHHHHh-cC---ceecCCCcee---EEEEECCC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence            345566677777777776 32   2220112466   99999876  556788999987 569999985      24799


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      |++  +..+++++++++++|.++
T Consensus       381 Ris--~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       381 RFS--AFGKRENIVEACERIKEA  401 (402)
T ss_pred             EEE--ecCCHHHHHHHHHHHHhh
Confidence            999  445899999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.87  E-value=2.2e-21  Score=170.95  Aligned_cols=224  Identities=15%  Similarity=0.115  Sum_probs=151.4

Q ss_pred             ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-ccccc-
Q psy6547          20 YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHY-   97 (266)
Q Consensus        20 v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~~-   97 (266)
                      ++.++.+.-+.+...+. .+++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|...+.. ..... 
T Consensus       157 ~~~v~~~~~~~~~~d~~-~~~~k~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~  234 (409)
T PRK07590        157 IVYLPCTAENNFVPELP-EEKVDIIYLCFPNNPTGTV-LTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEI  234 (409)
T ss_pred             eeEeecccccCCcccCc-ccCceEEEEeCCCCCcCCc-CCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhC
Confidence            77776531112222222 2367888877778888887 99999999999999999999999999876433321 11111 


Q ss_pred             CC---CCcCeeeeccccc-CCchhhhhheecHHhhhccC-----------CCCCCCC-CCCcHHHHHHHHHHHHHH-h--
Q psy6547          98 ED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLV-----------PGTHGST-YGGNPLACKLAMTALDVI-L--  158 (266)
Q Consensus        98 ~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~a~~~~l~~~-~--  158 (266)
                      .+   ....+.+|||.++ +| +|+||+++++++++.+.           ....... .+.+.+.+.++..+++.- .  
T Consensus       235 ~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~  313 (409)
T PRK07590        235 EGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQ  313 (409)
T ss_pred             CCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHH
Confidence            11   2334456999998 99 99999999998876321           0011222 246777887777766421 1  


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN  231 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~  231 (266)
                      -+++.+.++++++.+.+.|+. .+   +.......|+   ++|+.++.  ..+..+++.+|. ++||.+.|+      +.
T Consensus       314 ~~~~~~~~~~~r~~l~~~L~~-~~---~~~~~~~g~~---f~wi~~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~  384 (409)
T PRK07590        314 IKELIDYYMENAKIIREGLES-AG---FEVYGGVNAP---YIWVKTPD--GMSSWDFFDKLLQEANVVGTPGSGFGPSGE  384 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cC---CceecCCcce---EEEEECCC--CCCHHHHHHHHHHHCCEEEeChhHhCCCCC
Confidence            123566677777777777776 32   2221123567   89999876  456788888886 569999875      24


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +++|++  +..+++++++++++|.++
T Consensus       385 ~~iRi~--~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        385 GYFRLS--AFGSRENVLEAMERIKKA  408 (409)
T ss_pred             CEEEEE--ccCCHHHHHHHHHHHHhh
Confidence            699999  456899999999999875

>PRK03321 putative aminotransferase; Provisional

Probab=99.87  E-value=5.1e-21  Score=165.50  Aligned_cols=223  Identities=18%  Similarity=0.155  Sum_probs=156.0

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |++++++.++  +++++++++.++|++|.+ ++.+.+.++++.+ ++|+++|+||+|.+|...+
T Consensus       118 ~g~~~~~v~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~  193 (352)
T PRK03321        118 AGATPVQVPLTPDHTHDLDAMAAAIT--DRTRLIFVCNPNNPTGTV-VTPAELARFLDAV-PADVLVVLDEAYVEYVRDD  193 (352)
T ss_pred             cCCEEEEccCCCCCCCCHHHHHHhhc--cCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEechHHHhccCc
Confidence            46667777654     6889998883  367888887788889987 6666555555544 3699999999998764433


Q ss_pred             cc-ccccc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547          91 KL-LAIHY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIE  164 (266)
Q Consensus        91 ~~-~~~~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~  164 (266)
                      .. .....   ......+.++||.++ +| +|+||+++++++++.+...  ...++.+.+++.++.++++..+. .+..+
T Consensus       194 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~  270 (352)
T PRK03321        194 DVPDGLELVRDHPNVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVD  270 (352)
T ss_pred             CCCcHHHHHhhCCCEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            21 11111   112223335999998 89 9999999999999888753  45677888898888877753221 12233


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCH
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  244 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~  244 (266)
                      ++.+.++.+.+.|++ .+   +.. .+..|.   ++|+.++.    +..+++++|.++||.+.+.+.+++|++   ..+.
T Consensus       271 ~~~~~r~~~~~~L~~-~~---~~~-~~~~g~---~i~i~l~~----~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~  335 (352)
T PRK03321        271 AVVAERDRVRAALRA-AG---WTV-PPSQAN---FVWLPLGE----RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAP  335 (352)
T ss_pred             HHHHHHHHHHHHHHH-CC---Ccc-CCCCCC---EEEEeCCC----CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCH
Confidence            334444556666665 32   222 234577   99998854    467899999999999999777789999   3588


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINT  260 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~  260 (266)
                      +++++++++|+++++.
T Consensus       336 ~~~~~~~~al~~~~~~  351 (352)
T PRK03321        336 EENDAFLRAARAWRAG  351 (352)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987653

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.87  E-value=1.5e-20  Score=163.64  Aligned_cols=233  Identities=12%  Similarity=0.080  Sum_probs=157.1

Q ss_pred             CCCCCCceeecCC-------CHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          14 GPHMPGYNIIPYN-------DVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        14 ~~~~~~v~~~~~~-------d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ...+.+++.++++       |+++|++.+++.     +++++|+++.+++++|.+.    ++++|.++|+++|+++|+||
T Consensus       108 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~----~l~~i~~la~~~~~~livDe  183 (370)
T TIGR02539       108 ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP----DAGKVAKVCREKGVPLLLNC  183 (370)
T ss_pred             HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc----CHHHHHHHHHHcCCeEEEEC
Confidence            3456788888886       899999998531     2578888888888889876    89999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC--------CCcHHHHHHHHHH
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--------GGNPLACKLAMTA  153 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~  153 (266)
                      +|+. +..+.  ....++.+.-+.++||++++| .|+|++++++++++.+........+        +....++.++.++
T Consensus       184 a~~~-g~~~~--~~~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  259 (370)
T TIGR02539       184 AYTV-GRMPV--SAKEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMAS  259 (370)
T ss_pred             cccc-CCcCC--CHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHH
Confidence            9953 22221  111233344445599999977 6899999999998887754321111        1111244445555


Q ss_pred             HHHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCce-
Q psy6547         154 LDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLV-  225 (266)
Q Consensus       154 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~-  225 (266)
                      ++.... -+...+..++.+++++.|++ ++...+.. .++.++   |+.+.++...      ..++..+.+.|+++||. 
T Consensus       260 l~~~~~~l~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~s~t~---~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~  334 (370)
T TIGR02539       260 FPHVVERVKRWDEEVKKTRWFVAELED-IGFIQLGQ-KPKEHD---LVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHG  334 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEcc-CCCcCc---eEEEECCchhHHhhhhccccHHHHHHHHhCCCcc
Confidence            554222 11223334445688888888 55322111 123344   8877765310      12355799999999998 


Q ss_pred             eccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         226 TKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       226 ~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++++..+++|++.+ ..++++++++++.|++++++
T Consensus       335 ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       335 IRSGQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             ccCCcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence            77765679999974 57999999999999988765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK08363 alanine aminotransferase; Validated

Probab=99.87  E-value=8.9e-21  Score=166.60  Aligned_cols=224  Identities=14%  Similarity=0.105  Sum_probs=151.0

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc---cccCCCCcC
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA---IHYEDVRPD  103 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~---~~~~~~~~d  103 (266)
                      |++++++.+  .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.++...+....   .........
T Consensus       155 d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~  231 (398)
T PRK08363        155 DIDDIRKKI--TEKTKAIAVINPNNPTGAL-YEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIV  231 (398)
T ss_pred             CHHHHHhhC--CcceEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEE
Confidence            678888888  3467888887778888877 8999999999999999999999999977633332211   111111223


Q ss_pred             eeeeccccc-CCchhhhhhee--cHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHH
Q psy6547         104 IVILGKALS-GGLYPISAVLA--DDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRS  175 (266)
Q Consensus       104 ~~~~sK~~~-~g~~~~g~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~  175 (266)
                      +.+|||.++ +| +|+||+++  ++++.+.+...   .....++.+.+++.++..+|+....  ++..++++++++.+.+
T Consensus       232 ~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~  310 (398)
T PRK08363        232 MNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYK  310 (398)
T ss_pred             EecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            445999976 88 99999987  65555443321   1112356778888888777753111  3456677778888888


Q ss_pred             HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH-HHHHHCCceeccC------CCCEEEEeccCCCCHHHHH
Q psy6547         176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC-IKMKDAGLVTKPI------SNNIIRLSPALNITEQELR  248 (266)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gi~~~~~------~~~~iR~~~~~~~t~~~i~  248 (266)
                      .|++ ++  .+....+..|.   ++|+.++.....+..+++ ..|.++||.+.|+      +.+++|++.  ..++++++
T Consensus       311 ~L~~-~~--~~~~~~p~g~~---~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~  382 (398)
T PRK08363        311 RLNE-IP--GISTTKPQGAF---YIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILE  382 (398)
T ss_pred             HHhc-CC--CCEecCCCeEE---EEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHH
Confidence            8877 42  22221223344   555566541111345565 4457899999875      247999995  46899999


Q ss_pred             HHHHHHHHHHHHHh
Q psy6547         249 EGLDIIINTINTMA  262 (266)
Q Consensus       249 ~~~~~l~~~~~~~~  262 (266)
                      +++++|++++++..
T Consensus       383 ~~l~~l~~~~~~~~  396 (398)
T PRK08363        383 EAMDRFEEFMRERL  396 (398)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887754

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.87  E-value=7.4e-21  Score=170.74  Aligned_cols=248  Identities=14%  Similarity=0.104  Sum_probs=163.9

Q ss_pred             CCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      ++|.+...+...+..++.++.       .|+++|++.+...    .++++++++.++|++|.+ ++.+.+++|+++|++|
T Consensus       172 ~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~-~s~e~~~~i~~~a~~~  250 (481)
T PTZ00377        172 QYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV-LTRDVMEEIIKFCYEK  250 (481)
T ss_pred             CchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC-CCHHHHHHHHHHHHHC
Confidence            444444555667777888763       2579999998531    267877766678888887 9999999999999999


Q ss_pred             CCEEEEeccccCcCCcC-ccc-cccc--CCC---------CcCeeeecccc-c-CCchhhhhhee---cHHhhhccCCCC
Q psy6547          74 NVLFIADEVQTGLGRTG-KLL-AIHY--EDV---------RPDIVILGKAL-S-GGLYPISAVLA---DDEVMGTLVPGT  135 (266)
Q Consensus        74 g~~li~De~~~~~~~~g-~~~-~~~~--~~~---------~~d~~~~sK~~-~-~g~~~~g~~~~---~~~~~~~~~~~~  135 (266)
                      |++||+||+|..+...+ ..+ ++..  .++         ...+.+|||.+ + +| +|+||+++   ++++++.+....
T Consensus       251 ~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~  329 (481)
T PTZ00377        251 GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKLA  329 (481)
T ss_pred             CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHHh
Confidence            99999999997753322 111 1100  011         12233499985 6 79 99999986   788887776533


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHH----------hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE
Q psy6547         136 HGSTYGGNPLACKLAMTALDVI----------LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI  203 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~----------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~  203 (266)
                       ...++.+++++.++..+++..          ..  ..+.++++++++.+.+.|++ +.  .+....+..|+   ++|+.
T Consensus       330 -~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~--g~~~~~p~gg~---fl~~~  402 (481)
T PTZ00377        330 -SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK-IE--GVSCQPVEGAM---YAFPR  402 (481)
T ss_pred             -heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEeecCCeeE---EEEee
Confidence             234467888888888887421          00  12333456677777777776 42  23331233467   77765


Q ss_pred             EeeCccc----------hHHHHHH-HHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         204 LSVSAIL----------EVYDVCI-KMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       204 ~~~~~~~----------~~~~~~~-~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +......          +..+++. .|.++||.+.|+.       .+++|++..  .+++++++++++|.+++++.-+
T Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~  478 (481)
T PTZ00377        403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMK  478 (481)
T ss_pred             ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            5311011          1234544 4557899998852       358999954  7889999999999999887543

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=7.5e-21  Score=165.04  Aligned_cols=225  Identities=16%  Similarity=0.108  Sum_probs=159.4

Q ss_pred             CCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++..        |++++.+.+. .+++++++++.++|++|.+ ++.+.++++++.|+ ++++||+||+|.+
T Consensus       119 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-~~~~~lv~l~~p~NPTG~~-~~~~~~~~l~~~~~-~~~~iI~Deay~~  195 (364)
T PRK04781        119 RLQNAPLVEVPLVDGADGFHADVPAIVAAAL-ASNAKLVFLCSPSNPAGSA-IALDQIERALQALQ-GKALVVVDEAYGE  195 (364)
T ss_pred             HHcCCEEEEEecCCCccCCCcCHHHHHHHHh-ccCCeEEEEcCCCCCCCCC-cCHHHHHHHHHhCC-CCcEEEEeCcchh
Confidence            4456778888742        4566654442 3468888888888889987 78999999998885 4799999999987


Q ss_pred             cCCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hc
Q psy6547          86 LGRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EE  160 (266)
Q Consensus        86 ~~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~  160 (266)
                      |........ .+..+....+-+|||.++ +| +|+||+++++++++.+...  ...++.+.+++.++..+|+...   ..
T Consensus       196 f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~  272 (364)
T PRK04781        196 FSDVPSAVGLLARYDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTA  272 (364)
T ss_pred             hcCCcchHHHHhhCCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHH
Confidence            743211111 222223344455999999 99 9999999999999888753  3456678888887777775421   12


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIR  235 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR  235 (266)
                      +..+.++++++.+.+.|++ ++.  +....++.|+   |+|+.+++     ..++.+.|.++||.++++.     .+++|
T Consensus       273 ~~~~~~~~~r~~l~~~L~~-~~~--~~~~~p~~g~---f~~~~~~~-----~~~~~~~l~~~gI~v~~~~~~~~~~~~~R  341 (364)
T PRK04781        273 RRVAEVRAERERLHAALAQ-LPG--VRRVYPSQGN---FLLVRFDD-----AEAAFQALLAAGVVVRDQRAAPRLSDALR  341 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCC--CCeECCCCCc---EEEEEcCC-----HHHHHHHHHHCCeEEeeCCCCCCCCCeEE
Confidence            3344567777888888877 432  2111335578   99998854     5778999999999998752     47999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++   ..++++++++++.|+++.
T Consensus       342 is---~~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        342 IT---LGTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             Ee---CCCHHHHHHHHHHHHHHH
Confidence            99   347889999999998764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.87  E-value=3e-20  Score=160.91  Aligned_cols=228  Identities=14%  Similarity=0.133  Sum_probs=161.8

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|++++++.+++ .+++++++.++++++|.+.    ++++|.++|+++|+++++|++|. ++.  
T Consensus        96 ~g~~~~~v~~~~~~~~~~~~l~~~i~~-~~~~~v~i~~~~~~~G~~~----~~~~i~~~a~~~~~~li~D~~~~-~g~--  167 (356)
T cd06451          96 YGADVDVVEKPWGEAVSPEEIAEALEQ-HDIKAVTLTHNETSTGVLN----PLEGIGALAKKHDALLIVDAVSS-LGG--  167 (356)
T ss_pred             hCCCeEEeecCCCCCCCHHHHHHHHhc-cCCCEEEEeccCCCccccc----CHHHHHHHHHhcCCEEEEeeehh-ccC--
Confidence            4567777753     478999999943 2678888888888899886    79999999999999999999984 422  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC--CCC-----------------CCCCCCcHHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP--GTH-----------------GSTYGGNPLACKLAM  151 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~a~~  151 (266)
                      ..+....++.+..+.+.+|+++++ .++|+++.++++.+.+..  ...                 ....+.++..+.++.
T Consensus       168 ~~~~~~~~~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~  246 (356)
T cd06451         168 EPFRMDEWGVDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALR  246 (356)
T ss_pred             ccccccccCccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHH
Confidence            222333334333334468999976 678999999888766542  100                 122344555566777


Q ss_pred             HHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceec
Q psy6547         152 TALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTK  227 (266)
Q Consensus       152 ~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~  227 (266)
                      ++++.+..   +.+.++.+++.+++++.|++ ++...........+.   ++++..+.  +.+..+++++|.++ ||.++
T Consensus       247 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~~gI~~~  320 (356)
T cd06451         247 EALDLILEEGLENRWARHRRLAKALREGLEA-LGLKLLAKPELRSPT---VTAVLVPE--GVDGDEVVRRLMKRYNIEIA  320 (356)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCeeccCcccCCCc---eEEEECCC--CCCHHHHHHHHHHhCCEEEe
Confidence            77777654   34678888899999999987 553222210111233   45566554  45688999999998 99998


Q ss_pred             cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         228 PI----SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++    .++++|++++..+|++++++++++|++++
T Consensus       321 ~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         321 GGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             cccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            64    34689999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=5.4e-20  Score=160.06  Aligned_cols=218  Identities=22%  Similarity=0.273  Sum_probs=152.9

Q ss_pred             CceeecCCCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547          19 GYNIIPYNDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL   92 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~   92 (266)
                      ..+.++++|+++|++++++.    +++.+|+++++++++|.+.    ++++|.++|+++|+++++||+|+ | ++..|..
T Consensus       118 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~----pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g  193 (370)
T PRK05937        118 WHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA----PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG  193 (370)
T ss_pred             ceEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence            45667899999999999642    3466778899999999987    79999999999999999999995 3 4444433


Q ss_pred             cccccCC---CCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHHHHhhc--cHHHH
Q psy6547          93 LAIHYED---VRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEE--NMIEN  165 (266)
Q Consensus        93 ~~~~~~~---~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~  165 (266)
                      +. ..++   ..+++.++||.+++.   .+.+++.++..+.+.  ......+.+.++...+++.++++.+...  ...++
T Consensus       194 ~~-~~~~~~~~~~~~~tlsK~~g~~---G~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~  269 (370)
T PRK05937        194 FC-HSLGYENFYAVLVTYSKALGSM---GAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQ  269 (370)
T ss_pred             hH-HhhCCCCCcEEEEechhhhhcC---ceEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            21 1222   236778899999842   223455555444332  1122333446777777888888887653  35667


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCC
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNI  242 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~  242 (266)
                      ++++++++++.+.. ..          .+.   ...+.++.   .+..++.+.|.++||.+...   ..+++|++++..+
T Consensus       270 l~~l~~~l~~~l~~-~~----------~~~---~~~i~~~~---~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~  332 (370)
T PRK05937        270 LFRLKEYFAQKFSS-AA----------PGC---VQPIFLPG---ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFN  332 (370)
T ss_pred             HHHHHHHHHHhcCC-CC----------CCC---EEEEEeCC---hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCC
Confidence            77777777766653 11          122   22334433   24678899999999988742   2568999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINTM  261 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~  261 (266)
                      |++|++++++.|++++++.
T Consensus       333 t~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        333 TEDEVDILVSVLATYLEKY  351 (370)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998765

>KOG1360|consensus

Probab=99.87  E-value=1.7e-20  Score=155.91  Aligned_cols=233  Identities=18%  Similarity=0.208  Sum_probs=181.1

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-c
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-L   86 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~   86 (266)
                      ++..-.+.+=..|+|||++.|+++|++.+  .++.|-.|.+++++|.+.    ++++|++++++||.+-.+||+| .| |
T Consensus       272 ~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc----pleelcDvah~yGAiTFlDEVHAVGlY  347 (570)
T KOG1360|consen  272 QGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC----PLEELCDVAHKYGAITFLDEVHAVGLY  347 (570)
T ss_pred             HHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC----CHHHHHHHHHHhCceeeeehhhhhccc
Confidence            34444556667899999999999998744  578888999999999999    9999999999999999999999 33 4


Q ss_pred             CCcCcccccccCCC--CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHHHHHHHhhc
Q psy6547          87 GRTGKLLAIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE  160 (266)
Q Consensus        87 ~~~g~~~~~~~~~~--~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~  160 (266)
                      |..|.+.. +..|+  ..||++  ++|+||.-   .||+.++..+.+-++.+..+..|  +..|..++.++++++++..+
T Consensus       348 G~rGaGvg-erdGvm~kvDiIsGTLgKafGcV---GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~  423 (570)
T KOG1360|consen  348 GPRGAGVG-ERDGVMHKVDIISGTLGKAFGCV---GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSE  423 (570)
T ss_pred             cCCCCCcc-ccCCcchhhhhcccchhhhcccc---cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhh
Confidence            55555422 33454  567776  99999832   45688888888877765433333  45677888999999998875


Q ss_pred             ---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceecc-------C
Q psy6547         161 ---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKP-------I  229 (266)
Q Consensus       161 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~-------~  229 (266)
                         .+++.-+++..++++.|.+ ++-+.++.       |+.++.+.+.+  ...+.+.++.|. ++||++..       .
T Consensus       424 eg~~lR~~hqrnv~~~kq~l~~-~GiPVi~~-------pSHIiPv~vgd--a~l~~~~sd~Li~~h~iYvQaINyPTV~r  493 (570)
T KOG1360|consen  424 EGRVLRRQHQRNVKYVKQLLME-LGIPVIPN-------PSHIIPVRVGD--AALAKQASDILISKHNIYVQAINYPTVAR  493 (570)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-cCCcccCC-------CcceeeeeccC--HHHHHHHHHHHHHhcCeEEEeccCCcccc
Confidence               2566667788888888888 65444443       55589999988  456778888886 77999863       3


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +...+|+.|...+|++.++.+++.+..+++++
T Consensus       494 G~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  494 GTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             cceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999998875

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.86  E-value=3e-21  Score=166.58  Aligned_cols=220  Identities=15%  Similarity=0.143  Sum_probs=157.1

Q ss_pred             CCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      -.+.+++.++.     .|++++++.+  .+++++++++.++|++|.+ ++.+.++++++.++ +|+++|+||+|.++...
T Consensus       114 ~~g~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NptG~~-~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~  189 (346)
T TIGR01141       114 IHGAEVVKVPLDEDGQLDLEDILVAI--DDKPKLVFLCSPNNPTGNL-LSRSDIEAVLERTP-EDALVVVDEAYGEFSGE  189 (346)
T ss_pred             HcCCeEEEeccCCCCCCCHHHHHHhc--CCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchhhhcCC
Confidence            35666777663     4789998877  4568889988888889887 67777777777665 69999999999876432


Q ss_pred             Ccccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHH
Q psy6547          90 GKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENA  166 (266)
Q Consensus        90 g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~  166 (266)
                      +.... .........+.++||+++ +| +|+||+++++++.+.+...  ...++.+++++.++..+++... .+...+++
T Consensus       190 ~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  266 (346)
T TIGR01141       190 PSTLPLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTVEEI  266 (346)
T ss_pred             ccHHHHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            22111 111111122335899996 78 9999999999988887753  2346668888888877775443 23466777


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccCC
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALN  241 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~~  241 (266)
                      +++++.+++.|++ ..  .+.. .+..|.   ++|+.++.    ++++++++|.++||.+.++.     .+++|++++  
T Consensus       267 ~~~~~~l~~~L~~-~~--g~~~-~~~~g~---~~~~~~~~----~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--  333 (346)
T TIGR01141       267 NAERERLYDGLKK-LP--GLEV-YPSDAN---FVLIRFPR----DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--  333 (346)
T ss_pred             HHHHHHHHHHHHh-cC--CCEE-CCCcCC---EEEEecCC----CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC--
Confidence            7888888888876 42  2222 223466   89998864    57889999999999999864     589999944  


Q ss_pred             CCHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIII  255 (266)
Q Consensus       242 ~t~~~i~~~~~~l~  255 (266)
                       ++++++++++.|+
T Consensus       334 -~~~~i~~~~~~l~  346 (346)
T TIGR01141       334 -TREENDRFLAALR  346 (346)
T ss_pred             -CHHHHHHHHHHhC
Confidence             8899999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.5e-20  Score=164.84  Aligned_cols=231  Identities=19%  Similarity=0.215  Sum_probs=162.4

Q ss_pred             cCCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh------cCCEEEEe
Q psy6547          13 FGPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFIAD   80 (266)
Q Consensus        13 ~~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~------~g~~li~D   80 (266)
                      +.-++.+++.++.      .|++++++++  .++++++++++++|++|.+ ++.+.+++|.++|++      ||+++|+|
T Consensus       137 ~~~~g~~v~~v~~~~~~~~~d~~~l~~~~--~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~la~~~~~~~~~~~~ii~D  213 (394)
T PRK06836        137 VDNHGGKLVVVPTDTDTFQPDLDALEAAI--TPKTKAVIINSPNNPTGVV-YSEETLKALAALLEEKSKEYGRPIYLISD  213 (394)
T ss_pred             HHHcCCEEEEEecCCccCcCCHHHHHhhc--CcCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence            3445667777764      2689999998  4468888888888888877 899999999999999      89999999


Q ss_pred             ccccCcCCcCccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhc------cCCCCC-CCCCCCcHHHHHHH
Q psy6547          81 EVQTGLGRTGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGT------LVPGTH-GSTYGGNPLACKLA  150 (266)
Q Consensus        81 e~~~~~~~~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~a~  150 (266)
                      |+|.++...+...  .....+....+.++||.++ +| +|+||+++++++.+.      +..... ......+++.+.++
T Consensus       214 e~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  292 (394)
T PRK06836        214 EPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVV  292 (394)
T ss_pred             ccccccccCCCCCCChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHH
Confidence            9998774333211  1222233344455999999 89 999999998765322      110111 12234566777777


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC
Q psy6547         151 MTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS  230 (266)
Q Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  230 (266)
                      ...++.   ....+.++++++.+.+.|++ .+   +....+..|.   ++|+.++.   .+..++++.|+++||.+.|+.
T Consensus       293 ~~~l~~---~~~~~~~~~~r~~l~~~L~~-~g---~~~~~~~gg~---~~~~~~~~---~~~~~~~~~l~~~gv~v~~g~  359 (394)
T PRK06836        293 AKCLDA---TVDVSIYKRNRDLLYDGLTE-LG---FECVKPQGAF---YLFPKSPE---EDDVAFCEKAKKHNLLLVPGS  359 (394)
T ss_pred             HHHhCC---hHHHHHHHHHHHHHHHHHHh-CC---CEeecCCceE---EEEEeCCC---CCHHHHHHHHHhCCEEEECch
Confidence            655542   22345667777778788776 43   2221233467   78877765   256788899999999999862


Q ss_pred             ----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 ----NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                          .+++|++++  .+++++++++++|++++++..
T Consensus       360 ~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~  393 (394)
T PRK06836        360 GFGCPGYFRLSYC--VDTETIERSLPAFEKLAKEYK  393 (394)
T ss_pred             hcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence                479999965  689999999999999987653

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.86  E-value=9.9e-20  Score=160.00  Aligned_cols=225  Identities=14%  Similarity=0.167  Sum_probs=162.1

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.+     |++++++++  .++++++++..++|++|.+.    ++++|.++|+++|+++++|++|+ ++.
T Consensus       128 ~~~g~~v~~v~~~~~~~~~~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~~~  200 (398)
T TIGR03392       128 QQTGAKVVKLPIGADLLPDIRQLPELL--TPRTRILALGQMSNVTGGCP----DLARAITLAHQYGAVVVVDGAQG-VVH  200 (398)
T ss_pred             HHcCcEEEEEecCCCCCcCHHHHHHHh--ccCceEEEEECccccccccC----CHHHHHHHHHHcCCEEEEEhhhh-cCC
Confidence            3456777887753     689999999  45689999988999999986    78999999999999999999995 221


Q ss_pred             cCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPL  145 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  145 (266)
                      .  .....  ...+|+.++|  |.+++  .++|+++.++++.+.+.+...+                     ..-+.+..
T Consensus       201 ~--~~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~  274 (398)
T TIGR03392       201 G--PPDVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIA  274 (398)
T ss_pred             C--CCChh--hcCCCEEEEecccccCC--CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHH
Confidence            1  12222  2346777777  97763  3489999998887766532111                     11144555


Q ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547         146 ACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD  221 (266)
Q Consensus       146 ~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  221 (266)
                      +..++.++++.+.+   ++..++..++.+++++.|++ +.. ....   ...+.   +++|.++.   .+++++.+.|.+
T Consensus       275 ~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~---~~~~~---i~~~~~~~---~~~~~l~~~L~~  344 (398)
T TIGR03392       275 GVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFR---CPGSS---LLAFDFAG---VHHSDLAALLAE  344 (398)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeC---CCCCc---EEEEEeCC---cCHHHHHHHHHh
Confidence            67777777777654   34667778888888888877 422 1111   11233   77777653   456889999999


Q ss_pred             CCceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         222 AGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       222 ~gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +||.++++.            .+++|+|++..+|++|++++++.|+++++++
T Consensus       345 ~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       345 SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            999998653            4689999999999999999999999988763

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02397 aspartate transaminase

Probab=99.86  E-value=8.1e-21  Score=167.80  Aligned_cols=238  Identities=15%  Similarity=0.072  Sum_probs=159.4

Q ss_pred             cCCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      .++|.....+...+.+++.++.       .|++.+++.+++. +++++++++.++||+|.+ ++.+.+++|.++|++||+
T Consensus       150 P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v-~s~e~l~~i~~~a~~~~~  228 (423)
T PLN02397        150 PTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVD-PTPEQWEQISDLIKSKNH  228 (423)
T ss_pred             CCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCc
Confidence            3444555555666778887754       2688888888543 456777788889999987 899999999999999999


Q ss_pred             EEEEeccccCcCCcC---cccc---cccCC-CCcCeeeeccccc-CCchhhhhhe--e-cHHhhh----ccCCCCCCCCC
Q psy6547          76 LFIADEVQTGLGRTG---KLLA---IHYED-VRPDIVILGKALS-GGLYPISAVL--A-DDEVMG----TLVPGTHGSTY  140 (266)
Q Consensus        76 ~li~De~~~~~~~~g---~~~~---~~~~~-~~~d~~~~sK~~~-~g~~~~g~~~--~-~~~~~~----~~~~~~~~~~~  140 (266)
                      +||+||+|.+|...+   ....   +...+ ....+.+|||.++ +| ||+||++  + ++++.+    .+.........
T Consensus       229 ~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~  307 (423)
T PLN02397        229 LPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYS  307 (423)
T ss_pred             EEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccC
Confidence            999999998874322   1111   11111 2334445999999 89 9999984  3 554433    23222222333


Q ss_pred             CCcHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccch
Q psy6547         141 GGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILE  211 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~  211 (266)
                      +.+.+.+.++..+|+.-.        -+++.++++++++.+.+.|++ ++. ..+....+..|+   |+|+.+.      
T Consensus       308 ~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~~~~~~~~~~p~gg~---fl~~~l~------  377 (423)
T PLN02397        308 NPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEA-RGSPGDWSHITKQIGM---FSFTGLN------  377 (423)
T ss_pred             CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccCCceE---EEecCCC------
Confidence            456667777776664311        134566788888888888888 441 112221234566   6776652      


Q ss_pred             HHHHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         212 VYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       212 ~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                       .+++++|+ ++||.+.+.+    |+++. ..+++++++++++|.++++
T Consensus       378 -~~~~~~Ll~~~~V~v~~~~----Ri~~~-~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        378 -KEQVDRMTKEYHIYMTRDG----RISMA-GLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             -HHHHHHHHHhCCEEECCCC----eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence             34888886 6699997543    88843 3799999999999999975

>PRK09265 aminotransferase AlaT; Validated

Probab=99.86  E-value=1.9e-20  Score=164.75  Aligned_cols=233  Identities=16%  Similarity=0.114  Sum_probs=154.1

Q ss_pred             CCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.       .|++++++.+  .+++++++++.++|++|.+ ++.+.+++|.++|+++|++||+||+|.++..
T Consensus       139 ~g~~~v~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~P~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~  215 (404)
T PRK09265        139 SGGKPVHYLCDEEAGWFPDLDDIRSKI--TPRTKAIVIINPNNPTGAV-YSKELLEEIVEIARQHNLIIFADEIYDKILY  215 (404)
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHhc--cccceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEehhhhhccC
Confidence            4555665542       2678898888  3467777766678888876 8999999999999999999999999987643


Q ss_pred             cCcc-cccccC-C--CCcCeeeeccccc-CCchhhhhhee--cHH----hhhccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          89 TGKL-LAIHYE-D--VRPDIVILGKALS-GGLYPISAVLA--DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        89 ~g~~-~~~~~~-~--~~~d~~~~sK~~~-~g~~~~g~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      .+.. ...... .  ....+.+|||.++ +| +|+||+++  ++.    +.+.+.. ....+++.+.+++.++..+|...
T Consensus       216 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~  293 (404)
T PRK09265        216 DGAVHISIASLAPDLLCVTFNGLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDM-LASMRLCANVPAQHAIQTALGGY  293 (404)
T ss_pred             CCCCcCCHHHcCCCceEEEEecchhhccCcc-cceEEEEEeCchHHHHHHHHHHHH-HhccccCCCcHHHHHHHHHhcCc
Confidence            3321 111111 1  1223344999996 89 99999986  333    3333321 12234566778888887777422


Q ss_pred             hh-ccHH---HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCceeccC-
Q psy6547         158 LE-ENMI---ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVTKPI-  229 (266)
Q Consensus       158 ~~-~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~-  229 (266)
                      +. ..+.   +++.++++.+.+.|++ +.  .+....+..|+   ++|+.++...   ..+.+.+...|.++||.+.|+ 
T Consensus       294 ~~~~~~~~~~~~~~~~r~~~~~~L~~-~~--~~~~~~p~~g~---~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~  367 (404)
T PRK09265        294 QSINELILPGGRLYEQRDRAWELLNA-IP--GVSCVKPKGAL---YAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGT  367 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCcccCCCcce---EEEEEecccccCCCCHHHHHHHHHHhCCEEEECch
Confidence            11 1121   3455666777777766 42  23321344577   8888886521   113445677788999999875 


Q ss_pred             -----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 -----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 -----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                           ..+++|++.  ..+++++++++++|.++++..
T Consensus       368 ~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~  402 (404)
T PRK09265        368 GFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGY  402 (404)
T ss_pred             hhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence                 247999995  478999999999999988753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=2e-20  Score=161.68  Aligned_cols=220  Identities=13%  Similarity=0.105  Sum_probs=153.3

Q ss_pred             CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .-.+.+++.++.     .|++++++.++.. +++++++++++|++|.+. +   .+++.+++++++.++|+||+|.+|. 
T Consensus       118 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-~~k~v~l~~p~NPtG~~~-~---~~~l~~l~~~~~~~~ivDe~y~~~~-  191 (351)
T PRK14807        118 KIAGAVEIPVKLKEDYTYDVGSFIKVIEKY-QPKLVFLCNPNNPTGSVI-E---REDIIKIIEKSRGIVVVDEAYFEFY-  191 (351)
T ss_pred             HHcCCeEEEeecCCCCCCCHHHHHHHhhcc-CCCEEEEeCCCCCCCCCC-C---HHHHHHHHHhCCCEEEEeCcchhhc-
Confidence            345667777764     2688999988432 678888888889999884 4   5556666677788899999997763 


Q ss_pred             cCccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547          89 TGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIEN  165 (266)
Q Consensus        89 ~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  165 (266)
                       +...  .....+....+.+|||.++ +| +|+||+++++++.+.+.....  .+..+.+++.++..+++...-++..++
T Consensus       192 -~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~  267 (351)
T PRK14807        192 -GNTIVDVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNY  267 (351)
T ss_pred             -ccchHHHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHH
Confidence             2211  1222233444555999998 99 999999999999887764332  355678888888877764222344556


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccC
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPAL  240 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~  240 (266)
                      ++++++.+.+.|++ +.  .+.. .++.|.   ++|+.+++     ..++++.|.++||.+++..     .+++|+++  
T Consensus       268 ~~~~r~~l~~~l~~-~~--g~~~-~~~~~~---~~~i~~~~-----~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~--  333 (351)
T PRK14807        268 ILNERERLIKELSK-IP--GIKV-YPSKTN---FILVKFKD-----ADYVYQGLLERGILVRDFSKVEGLEGALRITV--  333 (351)
T ss_pred             HHHHHHHHHHHHHh-CC--CcEE-CcCCcc---EEEEEcCC-----HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc--
Confidence            66777777777765 32  2222 234566   88877754     5789999999999997642     47899993  


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTI  258 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~  258 (266)
                       .+.++.+++++.|++++
T Consensus       334 -~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        334 -SSCEANDYLINGLKELL  350 (351)
T ss_pred             -CCHHHHHHHHHHHHHhh
Confidence             36788899999888754

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.86  E-value=3.5e-20  Score=159.95  Aligned_cols=229  Identities=18%  Similarity=0.192  Sum_probs=162.3

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cC
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~   87 (266)
                      ....+.+++.++..|.+++++++++.   +++++++++++++++|.+.    ++++|.++|+++|+++|+||+|. + ++
T Consensus       102 ~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~livD~a~~~g~~~  177 (349)
T cd06454         102 IRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA----PLPELVDLAKKYGAILFVDEAHSVGVYG  177 (349)
T ss_pred             HHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc----CHHHHHHHHHHcCCEEEEEccccccccC
Confidence            34456778888888999999999753   3678888999999999875    79999999999999999999994 2 21


Q ss_pred             CcCccc---ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547          88 RTGKLL---AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-EN  161 (266)
Q Consensus        88 ~~g~~~---~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~-~~  161 (266)
                      ..+...   .....+.+..+.+++|++++   +.|+++.++++++.+....  ...+.+.++..++++.++++.+.. ++
T Consensus       178 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  254 (349)
T cd06454         178 PHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPE  254 (349)
T ss_pred             CCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHH
Confidence            222211   11122333334469999974   3578888888876654322  122235667778888888887755 55


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNII  234 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~i  234 (266)
                      ..+++.++++.+.+.|.+ ++......   ..+.   ++++..++  ..++.++.++|.++||.+.+.       +.+++
T Consensus       255 ~~~~~~~~~~~l~~~l~~-~g~~~~~~---~~~~---~~~~~~~~--~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~i  325 (349)
T cd06454         255 RRERLQENVRYLRRGLKE-LGFPVGGS---PSHI---IPPLIGDD--PAKAVAFSDALLERGIYVQAIRYPTVPRGTARL  325 (349)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCcccCC---CCCc---EEEEeCCC--hHHHHHHHHHHHhCCceEEEecCCccCCCCCeE
Confidence            788888999999998887 54322211   1233   34444432  346788999999999998752       24789


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      |++++..++++++++++++|+++
T Consensus       326 Ri~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         326 RISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHh
Confidence            99999989999999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=1.2e-20  Score=163.45  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=156.7

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +.-.+.+++.++.+     |++++++.++++ +++++++++++|++|.+ ++.+.+++|+++|   ++++|+||+|.+|.
T Consensus       122 ~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~-~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~~---~~~ii~De~y~~~~  196 (356)
T PRK04870        122 AKLAGLEFVGVPLTADFTLDLPAMLAAIAEH-RPALVFLAYPNNPTGNL-FDDADVERIIEAA---PGLVVVDEAYQPFA  196 (356)
T ss_pred             HHHcCCEEEEecCCCCCCCCHHHHHHHhhcC-CCCEEEEcCCCCCCCCC-CCHHHHHHHHHHC---CCEEEEECCchhhc
Confidence            34556777777643     689999998533 67888887778888887 7888888888887   78899999998774


Q ss_pred             CcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIEN  165 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~  165 (266)
                      ...........+....+.++|| ++ +| +|+||+++++++++.+....  ..++.+.+++.++..+++..+. ++..++
T Consensus       197 ~~~~~~~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~  272 (356)
T PRK04870        197 GDSWLPRLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQ  272 (356)
T ss_pred             CcchHHHHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3221111222223344555999 66 78 99999999999888776533  3455677788777777754221 345666


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEecc
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPA  239 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~  239 (266)
                      ++++++.+.+.|++ +.  .+.. .+..|.   ++|+.+++     ..+++++|.++||.++++      ..+++|++++
T Consensus       273 ~~~~~~~l~~~L~~-~~--~~~~-~~~~~~---~~~~~~~~-----~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~  340 (356)
T PRK04870        273 LRAERTRLAAALAA-LP--GVTV-FPSAAN---FILVRVPD-----AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG  340 (356)
T ss_pred             HHHHHHHHHHHHHh-CC--CcEE-CCCCCe---EEEEECCC-----HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC
Confidence            77788888888877 42  2222 234566   88988753     567899999999999864      2469999933


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINT  257 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~  257 (266)
                         +.+++++++++|+++
T Consensus       341 ---~~~~~~~l~~al~~~  355 (356)
T PRK04870        341 ---TPEENAQFLAALKAA  355 (356)
T ss_pred             ---CHHHHHHHHHHHHHh
Confidence               788999999998875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=1.2e-20  Score=164.73  Aligned_cols=221  Identities=13%  Similarity=0.068  Sum_probs=155.5

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+.+++.++.+     |+++|++.++ .++++++++++++|++|.+ ++.+.+++|.+.   . +++|+||+|.+|...
T Consensus       146 ~~g~~~~~v~~~~~~~~d~~~l~~~~~-~~~~~~v~l~~P~NPTG~~-~~~~~l~~l~~~---~-~~vi~DeaY~~~~~~  219 (380)
T PLN03026        146 VNGAEVIKVPRTPDFSLDVPRIVEAVE-THKPKLLFLTSPNNPDGSI-ISDDDLLKILEL---P-ILVVLDEAYIEFSTQ  219 (380)
T ss_pred             HcCCEEEEeecCCCCCcCHHHHHHHHh-ccCCcEEEEeCCCCCCCCC-CCHHHHHHHHhc---C-CEEEEECcchhhcCC
Confidence            456677777642     6888988883 2367899988889999988 566666666543   3 899999999877433


Q ss_pred             Ccccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHH
Q psy6547          90 GKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENA  166 (266)
Q Consensus        90 g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~  166 (266)
                      +.... ....+....+-+|||.++ +| +|+||+++++++++.+....  ..++.+.+++.++.++|+..+ -++..+++
T Consensus       220 ~~~~~~~~~~~~viv~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~  296 (380)
T PLN03026        220 ESRMKWVKKYDNLIVLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNAL  296 (380)
T ss_pred             cchHHHHHhCCCEEEEecchHhhcCcc-ccceeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            32111 112222333455999999 99 99999999999888776432  346678888888888885321 13456677


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccCCC
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNI  242 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~~~  242 (266)
                      +++++.+.+.|++ ++.  +.. .+..|+   |+++.++.  +.++.+++++|.++||.++++    ..+++|+++.   
T Consensus       297 ~~~r~~l~~~L~~-~~~--~~~-~p~~~~---f~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---  364 (380)
T PLN03026        297 VEERERLFGLLKE-VPF--LEP-YPSDAN---FILCRVTS--GRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---  364 (380)
T ss_pred             HHHHHHHHHHHHH-CCC--CeE-CCCCCe---EEEEECCC--CCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---
Confidence            7788888888887 432  111 234566   89998875  456788999999999999875    2479999933   


Q ss_pred             CHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIIN  256 (266)
Q Consensus       243 t~~~i~~~~~~l~~  256 (266)
                      +.++++++++.|++
T Consensus       365 ~~~~~~~l~~al~~  378 (380)
T PLN03026        365 KPEHTDALMEALKQ  378 (380)
T ss_pred             CHHHHHHHHHHHHH
Confidence            77888888888865

>KOG0259|consensus

Probab=99.86  E-value=6.1e-20  Score=151.90  Aligned_cols=225  Identities=20%  Similarity=0.227  Sum_probs=156.7

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc-ccccCC-CCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYED-VRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~-~~~~~~-~~~d~  104 (266)
                      |++.+|+++  ++++.+++++.++|+.|.+ ++.+.|++|+++|+++|+++|.||+|..+-+.+.+| ++..+. +.|.+
T Consensus       188 DL~~veal~--DENT~AivviNP~NPcGnV-ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVi  264 (447)
T KOG0259|consen  188 DLDGVEALA--DENTVAIVVINPNNPCGNV-YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVI  264 (447)
T ss_pred             chHHHHHhh--ccCeeEEEEeCCCCCCccc-ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceE
Confidence            799999999  6678888877777778877 999999999999999999999999997764444443 344443 34544


Q ss_pred             ee--ecc-cccCCchhhhhheecHHhhhccCCC--------CCCCCCCCcHHHHHHHHHHHHHHhhc---cHHHHHHHHH
Q psy6547         105 VI--LGK-ALSGGLYPISAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMG  170 (266)
Q Consensus       105 ~~--~sK-~~~~g~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~  170 (266)
                      ..  +|| |+-+| ||+||++..... ..++..        ....+..++.+.|+|.-..|+...++   .-+.-++.+.
T Consensus       265 tlggisKrW~VPG-WRlGWi~~hD~~-gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na  342 (447)
T KOG0259|consen  265 TLGGISKRWIVPG-WRLGWIALHDPR-GVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNA  342 (447)
T ss_pred             eecccccccccCC-ceeeeEEEeccc-ccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhH
Confidence            44  888 56699 999999875432 112211        12234456667777776655532221   2345567788


Q ss_pred             HHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCceeccC----CCCEEEEeccCCC
Q psy6547         171 EIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNI  242 (266)
Q Consensus       171 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi~~~~~----~~~~iR~~~~~~~  242 (266)
                      +...++|++ +..-..+  .+..|.  -+.++.+.-.   +-.+..+||++|. |+.+++.|+    -++|+|++  +.+
T Consensus       343 ~l~y~~Lk~-IP~l~cp--~kPeg~--mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~  415 (447)
T KOG0259|consen  343 DLCYSRLKD-IPCLTCP--VKPEGC--MYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITV  415 (447)
T ss_pred             HHHHHHHhc-CCCcccC--cCCCcc--eEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--Ecc
Confidence            888889888 5542222  233344  0444443321   1235678999985 789999986    57999999  778


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q psy6547         243 TEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ..+.++++++||++++.++.+
T Consensus       416 ~~~~leea~~Rik~Fc~RH~~  436 (447)
T KOG0259|consen  416 EEEMLEEAFSRIKEFCDRHSK  436 (447)
T ss_pred             ChHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999873

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=1.2e-20  Score=162.98  Aligned_cols=219  Identities=16%  Similarity=0.146  Sum_probs=153.5

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .-.+.+++.++.+     |++++++.+  . +++++++..++|++|.+ ++.+.+++|++.|++ +++||+||+|.+|..
T Consensus       117 ~~~G~~~~~v~~~~~~~~d~~~l~~~~--~-~~~lv~l~nPnNPTG~~-~~~~~l~~l~~~~~~-~~~vivDEay~~f~~  191 (351)
T PRK01688        117 ETIGVEIRTVPTLDNWQLDLPAIADNL--D-GVKVVYVCSPNNPTGNL-INPQDLRTLLELTRG-KAIVVADEAYIEFCP  191 (351)
T ss_pred             HHcCCEEEEeecCCCCCCCHHHHHHhc--c-CCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEECchhhcCC
Confidence            3456677777643     678888877  2 57888887888889987 899999999999876 688999999987742


Q ss_pred             cCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hccHH
Q psy6547          89 TGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMI  163 (266)
Q Consensus        89 ~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~  163 (266)
                      ...... ...++....+-+|||+++ +| +|+||+++++++++.+...  ...+..+.+++.++..+|+...   -++..
T Consensus       192 ~~s~~~~~~~~~n~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~  268 (351)
T PRK01688        192 QASLAGWLAEYPHLVILRTLSKAFALAG-LRCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAMRERV  268 (351)
T ss_pred             CCChHHHHhhCCCEEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHHHHHH
Confidence            211111 122222233444999999 89 9999999999998887743  3446667777777777775311   12344


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEEEEec
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSP  238 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~  238 (266)
                      +.+.+.++++.+.|++ ++.  +..-.++.++   |+++.+++     +.++.++|+++||.+++.     ..+++|+++
T Consensus       269 ~~~~~~r~~l~~~L~~-~~~--~~~~~ps~~n---fi~~~~~~-----~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~  337 (351)
T PRK01688        269 AEINANRQWLIAALKE-IPC--VEQVFDSETN---YILARFTA-----SSAVFKSLWDQGIILRDQNKQPGLSNCLRITI  337 (351)
T ss_pred             HHHHHHHHHHHHHHHh-CCC--CCeECCCCCc---EEEEEcCC-----HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC
Confidence            5566677778787776 432  2110234566   88887743     678999999999999854     247999994


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDII  254 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l  254 (266)
                      +   ++++++++++.|
T Consensus       338 ~---~~~e~~~l~~al  350 (351)
T PRK01688        338 G---TREECQRVIDAL  350 (351)
T ss_pred             C---CHHHHHHHHHhh
Confidence            4   789999999887

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.85  E-value=2.7e-19  Score=155.61  Aligned_cols=236  Identities=13%  Similarity=0.097  Sum_probs=166.2

Q ss_pred             CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.     .|++++++.++++++++++++..+++++|...    ++++|.++|+++|+++|+|+++ +++.
T Consensus       100 ~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~l~~~~~~~livDa~~-~~g~  174 (368)
T PRK13479        100 EYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILN----PLDEIAAVAKRHGKRLIVDAMS-SFGA  174 (368)
T ss_pred             HHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCcccccc----CHHHHHHHHHHcCCEEEEEccc-ccCC
Confidence            334667777764     36899999986555677888888888899886    7899999999999999999776 4532


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------------CCCCCCCcHHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------HGSTYGGNPLACKLAM  151 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~  151 (266)
                        .......++.+.-+.+++|++.|+ .++|++++++++.+.+....                 ....++++..++.++.
T Consensus       175 --~~~~~~~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~  251 (368)
T PRK13479        175 --IPIDIAELGIDALISSANKCIEGV-PGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFY  251 (368)
T ss_pred             --ccccccccCceEEEecCccccccC-CCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHH
Confidence              223344444444445588998755 45799999998877665421                 1222466767777777


Q ss_pred             HHHHHHhh----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547         152 TALDVILE----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       152 ~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  227 (266)
                      ++++.+..    ++..+++.++++++++.|++ ++...+.......+.   ++.|.++...+.+..++.++|.++||.++
T Consensus       252 ~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~gi~v~  327 (368)
T PRK13479        252 QALLELEEEGGVPARGARYANNQRTLVAGMRA-LGFEPLLDAEIQSPI---IVTFHAPADPAYDFKEFYERLKEQGFVIY  327 (368)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-cCCcccCCchhcCce---EEEEECCCCCCcCHHHHHHHHHHCCEEEe
Confidence            78876643    34567788888888888887 554322110111122   35555544212467889999999999998


Q ss_pred             cCC---CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 PIS---NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 ~~~---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++.   .+++|++....+++++++++++.|+++++++
T Consensus       328 ~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        328 PGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            753   3589999877789999999999999998765

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.85  E-value=1.9e-20  Score=167.20  Aligned_cols=224  Identities=15%  Similarity=0.132  Sum_probs=146.2

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      |+++|++++  ++++++|+++.++||+|.+ ++++.+++|+++|++  ++++||+||+|..|.................+
T Consensus       230 d~~~l~~~~--~~~tkai~l~nP~NPTG~v-~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v  306 (527)
T PRK09275        230 PDSELEKLR--DPSIKALFLVNPSNPPSVA-MSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILV  306 (527)
T ss_pred             CHHHHHhhc--CCCCCEEEEeCCcCCcCCC-CCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEE
Confidence            678898877  5678999988888889977 899999999999964  59999999999877421111111111233445


Q ss_pred             eeeccccc-CCchhhhhheecHH-----hhhcc--------------------------------CCCCCCCCCCCcHHH
Q psy6547         105 VILGKALS-GGLYPISAVLADDE-----VMGTL--------------------------------VPGTHGSTYGGNPLA  146 (266)
Q Consensus       105 ~~~sK~~~-~g~~~~g~~~~~~~-----~~~~~--------------------------------~~~~~~~~~~~~~~~  146 (266)
                      .+|||.++ +| ||+||++++++     +++.+                                +.....++.+.+.+.
T Consensus       307 ~SfSK~f~mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~  385 (527)
T PRK09275        307 YSFSKYFGATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQ  385 (527)
T ss_pred             eehhhhccCcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHH
Confidence            56999998 89 99999999876     33333                                112234555666666


Q ss_pred             HHH-H----HHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547         147 CKL-A----MTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------  208 (266)
Q Consensus       147 ~~a-~----~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------  208 (266)
                      |.+ +    .++++....  +...+.++++++.+.+.|.    . .+....+..+.   ++++++..-.           
T Consensus       386 Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~Lg----~-~~~~~~p~g~f---Y~~~di~~~~~~~~g~~f~~~  457 (527)
T PRK09275        386 QVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGLG----L-PEPEDPNNAAY---YTLIDLEEWAEKNYGKEFADY  457 (527)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcC----C-CCcCCCCCeeE---EEEEEhHHhhhhccCchhhhh
Confidence            664 3    222321111  2345555566665655552    1 12111234455   6666664310           


Q ss_pred             ---cchHHHHHHHHH-HCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 ---ILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 ---~~~~~~~~~~l~-~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ..+..+|+.+|. +.||.+.|+     ..+++|+|.. +.+++++.++.++|.+++++...
T Consensus       458 l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        458 LKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             hhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHH
Confidence               125678888887 559999986     2468999942 25889999999999999988643

>PLN02231 alanine transaminase

Probab=99.85  E-value=3.6e-20  Score=167.12  Aligned_cols=248  Identities=13%  Similarity=0.114  Sum_probs=164.3

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      .+|.+...+..++.+++.++.+       |+++|++.++..    .+++++++..++|++|.+ ++.+.+++|.++|++|
T Consensus       225 ~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v-ls~e~l~~Iv~~a~~~  303 (534)
T PLN02231        225 QYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV-LAEENQRDIVEFCKQE  303 (534)
T ss_pred             CChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHc
Confidence            4445555566677778777632       689999998542    157887776678889987 9999999999999999


Q ss_pred             CCEEEEeccccCcCCc-Cccc-cccc----CCC---C---cCeeeecccc-c-CCchhhhhhee---cHHhhhccCCCCC
Q psy6547          74 NVLFIADEVQTGLGRT-GKLL-AIHY----EDV---R---PDIVILGKAL-S-GGLYPISAVLA---DDEVMGTLVPGTH  136 (266)
Q Consensus        74 g~~li~De~~~~~~~~-g~~~-~~~~----~~~---~---~d~~~~sK~~-~-~g~~~~g~~~~---~~~~~~~~~~~~~  136 (266)
                      |++||+||+|..+... +..+ ++..    .+.   +   ..+.++||.+ + +| +|+||+++   ++++.+.+.....
T Consensus       304 ~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~  382 (534)
T PLN02231        304 GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVAS  382 (534)
T ss_pred             CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHh
Confidence            9999999999876432 2222 2111    111   1   2233599987 5 79 99999976   5777776654322


Q ss_pred             CCCCCCcHHHHHHHHHHHHH-------Hh-----hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEE
Q psy6547         137 GSTYGGNPLACKLAMTALDV-------IL-----EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLIL  204 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~~~l~~-------~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  204 (266)
                       .+.+.+.+.+.++..+++.       +.     .+++++.++++++.+.+.|++ +.  .+....+..|+   ++|..+
T Consensus       383 -~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~--gi~~~~p~Ggf---ylw~~l  455 (534)
T PLN02231        383 -VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LE--GVTCNKAEGAM---YLFPRI  455 (534)
T ss_pred             -hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCeee---EEeccc
Confidence             3345566677766666631       11     123567788888888888887 42  23331233455   666343


Q ss_pred             --eeCc--------cchHHHHHHHHH-HCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         205 --SVSA--------ILEVYDVCIKMK-DAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       205 --~~~~--------~~~~~~~~~~l~-~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                        +...        ......++.+|+ +.||.+.|+.       ..++|++  +..+++++++++++|.+++++...
T Consensus       456 ~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~  530 (534)
T PLN02231        456 HLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPAIVSRLTEFHKSFMD  530 (534)
T ss_pred             cCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHHHH
Confidence              3200        011334667666 6799999862       2469999  567899999999999999887654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.85  E-value=2.4e-19  Score=157.74  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=160.0

Q ss_pred             CCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      -.+.+++.++.     .|++++++.+  .++++++++..++|++|.+.    ++++|.++|+++|+++++|++|+ ++..
T Consensus       132 ~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~i~~l~~~~g~~~ivD~a~~-~g~~  204 (401)
T PRK10874        132 QTGAKVVKLPLGADRLPDVDLLPELI--TPRTRILALGQMSNVTGGCP----DLARAITLAHQAGMVVMVDGAQG-AVHF  204 (401)
T ss_pred             HhCCEEEEEecCCCCcCCHHHHHHhc--CcCcEEEEEeCCcccccCcC----CHHHHHHHHHHcCCEEEEECCcc-cccc
Confidence            34667777764     3689999999  55789999999999999987    89999999999999999999994 2211


Q ss_pred             CcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCC---------------------CCCCCCcHHH
Q psy6547          90 GKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH---------------------GSTYGGNPLA  146 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~  146 (266)
                        .......  .+|+.+  ++|.+++  ..+|++..++++.+.+.+...                     ...-+.+..+
T Consensus       205 --~~~~~~~--~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~  278 (401)
T PRK10874        205 --PADVQAL--DIDFYAFSGHKLYGP--TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAG  278 (401)
T ss_pred             --cCCchhc--CCCEEEEecccccCC--CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHH
Confidence              1222233  456555  5597762  236899999888776653211                     0111445566


Q ss_pred             HHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         147 CKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       147 ~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      ..+..++++.+...   ...++.+++++++++.|++ +..  +.......+.   +++|.++.   .+.+++.+.|.++|
T Consensus       279 ~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g--~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~~g  349 (401)
T PRK10874        279 VIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPG--FRSFRCQDSS---LLAFDFAG---VHHSDLVTLLAEYG  349 (401)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCC--EEEeCCCCCc---EEEEEECC---cCHHHHHHHHHHCC
Confidence            77777777776543   3567777888888888877 421  1110012233   77777643   45688999999999


Q ss_pred             ceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       224 i~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |.++++.            .+++|+|++..+|++|++++++.|+++++.+
T Consensus       350 I~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        350 IALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             cEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            9998742            4789999999999999999999999987753

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=2.9e-20  Score=161.90  Aligned_cols=224  Identities=17%  Similarity=0.115  Sum_probs=155.8

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.+     |++++++.++  +++++++++.++|++|.+ ++.+.+++|++.|++ ++++|+||+|..|.
T Consensus       129 ~~~~g~~~~~v~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~-~~~ii~De~y~~~~  204 (371)
T PRK05166        129 PTMMGARVERVTVTPDLGFDLDALCAAVA--RAPRMLMFSNPSNPVGSW-LTADQLARVLDATPP-ETLIVVDEAYAEYA  204 (371)
T ss_pred             HHHcCCeEEEeecCCCCCCCHHHHHHhhh--cCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEECcHHHhc
Confidence            34566777777653     6899998884  356788887788889987 899999999998865 88999999998774


Q ss_pred             CcCcccc-cc---c-CCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547          88 RTGKLLA-IH---Y-EDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E  159 (266)
Q Consensus        88 ~~g~~~~-~~---~-~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~  159 (266)
                      ..+.... ..   . ......+.+|||.++ +| +|+||+++ ++++.+.+...  ...++.+.+++.++.+++..-+ -
T Consensus       205 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~  281 (371)
T PRK05166        205 AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLLDRV--RTPFNVNGAAQAAALAALDDEEHL  281 (371)
T ss_pred             CCcCcccHHHHHhhcCCCEEEEeechHhhhcch-hheeeeecCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCHHHH
Confidence            2221111 11   1 112234455999999 99 99999765 67777766532  2345678888877777764211 1


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIR  235 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR  235 (266)
                      ++..+.++++++.+.+.|++ .+   +.. .++.|+   |+|+.++.    +..+++++|.++||.+.|+    ..+++|
T Consensus       282 ~~~~~~~~~~r~~l~~~L~~-~g---~~~-~p~~g~---fl~~~~~~----~~~~l~~~l~~~gi~v~p~~~~~~~~~iR  349 (371)
T PRK05166        282 AKGVALALAERERLKKELAE-MG---YRI-APSRAN---FLFFDARR----PASAVAEALLRQGVIVKPWKQPGFETFIR  349 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-Cc---Cee-CCCcCC---EEEEeCCC----CHHHHHHHHHHCCeEEecCCCCCCCCeEE
Confidence            23455666777777888877 43   222 334577   89988654    5688999999999999875    257899


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++..   +.++.+++.+.|++++
T Consensus       350 i~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        350 VSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             EEcC---CHHHHHHHHHHHHHHh
Confidence            9933   6677788887777654

>PRK08637 hypothetical protein; Provisional

Probab=99.85  E-value=4.9e-20  Score=161.37  Aligned_cols=243  Identities=14%  Similarity=0.136  Sum_probs=159.7

Q ss_pred             CcCcccccC-CCCCCceeecC--C----CHHHHHHHHh--cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh----
Q psy6547           6 DPTSYNEFG-PHMPGYNIIPY--N----DVDALEAKLK--SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ----   72 (266)
Q Consensus         6 ~~~~~~~~~-~~~~~v~~~~~--~----d~~~l~~~l~--~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~----   72 (266)
                      ++.+...+. ..+.+++.++.  +    |++++++.++  ..+..++++++.++||+|.+ ++.+.+++|+++|++    
T Consensus       103 y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~  181 (388)
T PRK08637        103 WGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT-PTEKEATAIVEAIKELADA  181 (388)
T ss_pred             CccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHHHhc
Confidence            334444343 46778888875  2    5899998885  22344555566578888876 999999999999885    


Q ss_pred             -cCCEEEEeccccCcCCcCccc-c-ccc-CCCCcC---ee--eeccccc-CCchhhhhheec------HHhhhccCCC--
Q psy6547          73 -YNVLFIADEVQTGLGRTGKLL-A-IHY-EDVRPD---IV--ILGKALS-GGLYPISAVLAD------DEVMGTLVPG--  134 (266)
Q Consensus        73 -~g~~li~De~~~~~~~~g~~~-~-~~~-~~~~~d---~~--~~sK~~~-~g~~~~g~~~~~------~~~~~~~~~~--  134 (266)
                       |+++||+||+|.+|...+... + +.. .+...+   +.  ++||.++ +| +|+||++.+      +++.+.+...  
T Consensus       182 ~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~  260 (388)
T PRK08637        182 GTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVK  260 (388)
T ss_pred             CCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHH
Confidence             999999999998874333211 1 111 121122   22  6999877 89 999999853      5666555421  


Q ss_pred             --CCCCCCCCcHHHHHHHHHHHHHHhhccHHHH-------HHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEE
Q psy6547         135 --THGSTYGGNPLACKLAMTALDVILEENMIEN-------AYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLIL  204 (266)
Q Consensus       135 --~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~  204 (266)
                        .....++.|.+.+.++..+++.   ..+.++       ++++.+.+.+.|++ .. ...+....+..|.   ++|+.+
T Consensus       261 ~~~~~~~~~~s~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~~l~~-~~~~~~~~~~~~~~g~---~~~~~l  333 (388)
T PRK08637        261 GLIRSNISNGPHPSQSAVLRALNS---PEFDKEKQEKFQILKERYEKTKEVLYD-GKYDDAWQAYPFNSGY---FMCLKL  333 (388)
T ss_pred             HHhhcccCCCCcHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccccccceE---EEEecC
Confidence              1123346678888888877742   223333       44444444555544 21 1123321334677   888888


Q ss_pred             eeCccchHHHHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         205 SVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       205 ~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.   .+..+++++|+ ++||.+.+.+.+++|++... .+++++++++++|.+++..+
T Consensus       334 ~~---~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        334 KG---VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             Ch---HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            63   35788999996 67998887767899999664 58999999999999988753

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=4e-20  Score=160.19  Aligned_cols=217  Identities=15%  Similarity=0.204  Sum_probs=150.0

Q ss_pred             CCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.+       +++++++..   ++++++++++++|++|.+ ++.+.+++|++.|++ +++||+||+|.+|..
T Consensus       126 ~g~~~~~~~l~~~~~~~~~~~~~~~~~---~~~k~i~l~~p~NPTG~~-~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~  200 (357)
T PRK14809        126 HHGEVREYPVSKADDFEQTADTVLDAY---DGERIVYLTSPHNPTGSE-IPLDEVEALAERTDE-ETLVVVDEAYGEFAE  200 (357)
T ss_pred             cCCeEEEEecccCcCCCcCHHHHHHhh---cCCcEEEEeCCCCCCCcC-CCHHHHHHHHHhCcc-CcEEEEechhhhccC
Confidence            34556555532       344444433   246788888888889987 899999999999875 789999999987753


Q ss_pred             cCccc-ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHH
Q psy6547          89 TGKLL-AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIEN  165 (266)
Q Consensus        89 ~g~~~-~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~  165 (266)
                      .+... .....+....+.+|||.++ +| +|+||+++++++++.+...  ..++..+.+++.++..+++.-+ -++..+.
T Consensus       201 ~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~  277 (357)
T PRK14809        201 RPSAVALVEERDDVAVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARV--NTPFAASELACRAGLAALDDDEHVERTVET  277 (357)
T ss_pred             CchhHHHHhhCCCEEEEecchhHhcCcc-hhheeeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence            33211 1222233445566999998 89 9999999999988887653  3466778888888877774211 0223444


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCC
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALN  241 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~  241 (266)
                      ++++++.+.+.|..    ..    .+..|+   |+|+.++     +..++++.|.++||.+.++.    .+++|++.   
T Consensus       278 ~~~~r~~l~~~L~~----~~----~~~~g~---f~~~~~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---  338 (357)
T PRK14809        278 ARWAREYIREELDA----PT----WESAGN---FVLAEVG-----DASAVAEAAQERGVIVRDCTSFGLPECIRITC---  338 (357)
T ss_pred             HHHHHHHHHHHhcC----cc----CCCCCC---EEEEECC-----CHHHHHHHHHHCCEEEEECccCCCCCeEEEec---
Confidence            44555555555543    11    234577   8998774     35789999999999999863    47899993   


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTIN  259 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~  259 (266)
                      .+++++++++++|+++++
T Consensus       339 ~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        339 GTREETERAVEVLNEVLA  356 (357)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            367899999999998764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.85  E-value=6.1e-20  Score=163.73  Aligned_cols=224  Identities=14%  Similarity=0.126  Sum_probs=141.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      |.+++++++  ++++++++++.++||+|.+ ++.+.+++|+++|++|  +++||+||+|..|.................+
T Consensus       229 d~~~l~~~~--~~~~kai~l~nP~NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v  305 (521)
T TIGR03801       229 PDKELEKLR--DPSIKALFVVNPSNPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGV  305 (521)
T ss_pred             CHHHHHHhc--CCCCcEEEEeCCCCCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEE
Confidence            567888776  5578999977778888877 9999999999999987  9999999999776421111111111223445


Q ss_pred             eeeccccc-CCchhhhhheecHH-----hhhc--------cC------------------------CCCCCCCCCCcHHH
Q psy6547         105 VILGKALS-GGLYPISAVLADDE-----VMGT--------LV------------------------PGTHGSTYGGNPLA  146 (266)
Q Consensus       105 ~~~sK~~~-~g~~~~g~~~~~~~-----~~~~--------~~------------------------~~~~~~~~~~~~~~  146 (266)
                      .+|||.++ +| ||+||++++++     +++.        +.                        .....++.+.+.+.
T Consensus       306 ~SfSK~fg~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~  384 (521)
T TIGR03801       306 YSFSKYFGATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ  384 (521)
T ss_pred             EcchhhccCch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence            55999998 89 99999998764     2211        11                        11123344455555


Q ss_pred             HH--H---HHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547         147 CK--L---AMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------  208 (266)
Q Consensus       147 ~~--a---~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------  208 (266)
                      +.  +   +.+.++....  ++..+.++++.+.+.+.|    +.. +.......+.   ++++++..-.           
T Consensus       385 Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L----g~~-~~~~~~~g~~---Y~~~di~~~~~~~~~~~f~~~  456 (521)
T TIGR03801       385 QVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL----GLP-LQEDPNDVAY---YTLIDLEEWAEKNYGEEFSSY  456 (521)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----CCC-CcCCCCCeEE---EEEeehHHHHHHhcchHHHHH
Confidence            44  2   2333321111  223445555555555554    211 1111234566   7777776310           


Q ss_pred             ---cchHHHHHHHHH-HCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 ---ILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 ---~~~~~~~~~~l~-~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ..+..+|+.+|. +.||.+.|+     ..+++|+|+. ..+++++.++.++|++++++...
T Consensus       457 l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       457 LKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             HhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence               114677888887 569999986     2357999952 36899999999999999977543

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=2.6e-20  Score=161.10  Aligned_cols=223  Identities=15%  Similarity=0.180  Sum_probs=153.0

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ...++.+++.++..     |++++++      ..+++++..++|++|.+ ++.+.+++|.+.++  ++++|+||+|..|+
T Consensus       118 ~~~~g~~~~~v~~~~~~~~d~~~l~~------~~~~v~~~~P~NPtG~~-~~~~~~~~l~~~~~--~~~livDe~y~~~~  188 (353)
T PRK05387        118 AGLYGIPYEEIPLDDDFSIDVEDYLR------PNGGIIFPNPNAPTGIA-LPLAEIERILAANP--DSVVVIDEAYVDFG  188 (353)
T ss_pred             HHHcCCEEEEeecCCCCCCCHHHHHh------cCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC--CcEEEEeCcccccC
Confidence            34556777777653     4565542      23556666668888987 77777777776543  99999999997774


Q ss_pred             CcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCC-CCCCCcHHHHHHHHHHHHHHh-hccHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVIL-EENMIE  164 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~  164 (266)
                      ........+.......+.++||.++ +| +|+||+++++++.+.+...... .+++.+.+++.++..+++..+ -++..+
T Consensus       189 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  267 (353)
T PRK05387        189 GESAIPLIDRYPNLLVVQTFSKSRSLAG-LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRA  267 (353)
T ss_pred             CcchHHHHhhCCCEEEEEehhHhhcchh-hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHH
Confidence            2111111122223344455999999 99 9999999999988877654322 356678888888877775321 134566


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccC
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPAL  240 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~  240 (266)
                      +++++++.+.+.|++ .+.   .. .+..|.   ++|+.++.   .++.+++++|.++||.+++.    ..+++|++++ 
T Consensus       268 ~~~~~~~~l~~~L~~-~g~---~~-~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~-  335 (353)
T PRK05387        268 KVIATRERLVEELEA-LGF---EV-LPSKAN---FVFARHPS---HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG-  335 (353)
T ss_pred             HHHHHHHHHHHHHHH-CCC---eE-CCCcCc---EEEEECCC---CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-
Confidence            777788888888877 432   21 223456   78877653   46788999999999999654    2468999943 


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTIN  259 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~  259 (266)
                        +++++++++++|++++.
T Consensus       336 --~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        336 --TDEEMEALVDALKEILA  352 (353)
T ss_pred             --CHHHHHHHHHHHHHHhh
Confidence              77999999999998764

>KOG0257|consensus

Probab=99.84  E-value=4e-21  Score=161.11  Aligned_cols=216  Identities=17%  Similarity=0.264  Sum_probs=161.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc---ccc--cccCCCC
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLA--IHYEDVR  101 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~---~~~--~~~~~~~  101 (266)
                      |.++||..+  .+++++|+++.++|++|-+ .+++.|++|+++|++||+++|.||+|..+...|.   .++  -..+.+.
T Consensus       161 D~~~le~~~--t~kTk~Ii~ntPhNPtGkv-fsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert  237 (420)
T KOG0257|consen  161 DPEELESKI--TEKTKAIILNTPHNPTGKV-FSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT  237 (420)
T ss_pred             ChHHHHhhc--cCCccEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE
Confidence            899999999  7789999999999999988 8999999999999999999999999966544443   122  2234456


Q ss_pred             cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----------ccHHHHHHHHH
Q psy6547         102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----------ENMIENAYKMG  170 (266)
Q Consensus       102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----------~~~~~~~~~~~  170 (266)
                      ..+.++||+++ .| ||+||+++++.+...+....+...++.++..+.|..+++..-..          .++.+.+++++
T Consensus       238 itvgS~gKtf~~TG-WrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~kr  316 (420)
T KOG0257|consen  238 ITVGSFGKTFGVTG-WRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKR  316 (420)
T ss_pred             EEeccccceeeeee-eeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHH
Confidence            77777999999 89 99999999888888888777777787777777777766654331          13667788999


Q ss_pred             HHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------c----chHHHHHHHHH-HCCceeccCC---------
Q psy6547         171 EIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------I----LEVYDVCIKMK-DAGLVTKPIS---------  230 (266)
Q Consensus       171 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~----~~~~~~~~~l~-~~gi~~~~~~---------  230 (266)
                      +.+.+.|.+ ++.+...   +..+-   ++|.+++...      +    .+...++.+|. +.|+.+-|..         
T Consensus       317 dil~k~L~~-lg~~v~~---p~gay---yl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~  389 (420)
T KOG0257|consen  317 DILAKALEE-LGLKVTG---PEGAY---YLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIK  389 (420)
T ss_pred             HHHHHHHHh-cCCcccc---CCCce---EEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhH
Confidence            999999998 6543321   12333   7887777211      1    12345678876 5588887752         


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                        .+.+|++  ..-+++.++++.++++
T Consensus       390 ~~~~~~r~~--~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  390 VAERLVRFC--FCKADETLRKAIERLK  414 (420)
T ss_pred             HHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence              3567777  5677788888888887

>PRK09105 putative aminotransferase; Provisional

Probab=99.84  E-value=3.7e-20  Score=160.99  Aligned_cols=224  Identities=13%  Similarity=0.049  Sum_probs=153.3

Q ss_pred             cccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ..+..++.+++.++.+     |++++++..   +++++++++.++|++|.+ ++.+.++++.+.+ ++++++|+||+|..
T Consensus       134 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~---~~~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~  208 (370)
T PRK09105        134 RAADAQGAPVAKVPLRADGAHDVKAMLAAD---PNAGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIH  208 (370)
T ss_pred             HHHHHcCCeEEEecCCCCCCCCHHHHHhcC---CCCCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHH
Confidence            3345567777777653     566666542   356777777778889987 8999999998875 45999999999976


Q ss_pred             cCCcCcccccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          86 LGRTGKLLAIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        86 ~~~~g~~~~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      |.......... .......+.+|||.++ +| +|+||+++++++++.+...   ..+..+.+.+.++.++++..+- +..
T Consensus       209 f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~  284 (370)
T PRK09105        209 FSDAPSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQR  284 (370)
T ss_pred             hccCcchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHH
Confidence            64211111111 1112233345999998 89 9999999999988877653   3344666777777777753111 335


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---CCCCEEEEecc
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPA  239 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~~~~~iR~~~~  239 (266)
                      .++++++++.+.+.|++ .+.   .. ..+.|.   |+++.++.    +..++++.|.++||.+..   ...+++|+++ 
T Consensus       285 ~~~~~~~r~~l~~~L~~-~g~---~~-~~~~~~---f~~~~~~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~-  351 (370)
T PRK09105        285 RAENAAVREDTIAWLKK-KGY---KC-TPSQAN---CFMVDVKR----PAKAVADAMAKQGVFIGRSWPIWPNWVRVTV-  351 (370)
T ss_pred             HHHHHHHHHHHHHHHHH-CCC---Cc-CCCCCc---EEEEeCCC----CHHHHHHHHHHCCcEEecCCCCCCCeEEEEc-
Confidence            56677777788888877 432   22 234466   77665543    568899999999999842   1358999993 


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTI  258 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~  258 (266)
                        .++++++++++.|++.+
T Consensus       352 --~~~~~~~~l~~al~~~~  368 (370)
T PRK09105        352 --GSEEEMAAFRSAFAKVM  368 (370)
T ss_pred             --CCHHHHHHHHHHHHHHh
Confidence              37888999999998765

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.84  E-value=1.2e-19  Score=155.94  Aligned_cols=213  Identities=8%  Similarity=0.026  Sum_probs=145.6

Q ss_pred             ecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcCcccccccCCC
Q psy6547          23 IPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDV  100 (266)
Q Consensus        23 ~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g~~~~~~~~~~  100 (266)
                      +.++++++++.    .+++++|++++ .+++|.+ ++.+++++|+++|+++|+++++||+|..+  +..|.. ....++.
T Consensus       123 ~~~~~l~~l~~----~~~~~lIiitg-~s~~G~v-~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~  195 (346)
T TIGR03576       123 FESDELSELKK----IDGTSLVVITG-STMDLKV-VSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGA  195 (346)
T ss_pred             eccCCHHHHhh----CcCceEEEEEC-CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCC
Confidence            44566666432    23567888876 4778877 68899999999999999999999999542  112321 1112333


Q ss_pred             CcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547         101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       101 ~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      +.-+.++||++ +| +++||+++++++++.+........++.+++.++++.++|+....+...+.++++.+.+.+.+.. 
T Consensus       196 divv~s~SKal-aG-~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~-  272 (346)
T TIGR03576       196 DLVVTSTDKLM-DG-PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK-  272 (346)
T ss_pred             cEEEeccchhc-cc-cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh-
Confidence            34445599976 45 7899999999999888765555455568889999999998655455667777777777777764 


Q ss_pred             cccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccCCCCHH---HHHHHHH
Q psy6547         181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQ---ELREGLD  252 (266)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~~~t~~---~i~~~~~  252 (266)
                      +.     . .+..++   |+++.++.  ..+.+...+.|.++||.++|+.     .+++|++  +..+++   +++++++
T Consensus       273 ~~-----~-~~~~~~---f~~~~~~~--~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~  339 (346)
T TIGR03576       273 LN-----V-ERTPTG---FVIKGVEE--EKLIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVE  339 (346)
T ss_pred             CC-----C-CcCCCe---EEEEeCCC--CCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHH
Confidence            32     1 122344   78877754  1123344455568899999852     5799999  344444   7899999


Q ss_pred             HHHHHH
Q psy6547         253 IIINTI  258 (266)
Q Consensus       253 ~l~~~~  258 (266)
                      .|++.+
T Consensus       340 al~~~~  345 (346)
T TIGR03576       340 AVKDSL  345 (346)
T ss_pred             HHHhcc
Confidence            987754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.84  E-value=4.2e-19  Score=156.43  Aligned_cols=224  Identities=16%  Similarity=0.096  Sum_probs=160.2

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |+++|++++  .+++++++++.++|++|.+.    ++++|.++|+++|+++++|++|+ ++.  
T Consensus       137 ~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~l~~~~n~tG~~~----~~~~i~~~~~~~~~~vivD~a~~-~g~--  207 (406)
T PRK09295        137 VGAELRVIPLNPDGTLQLETLPALF--DERTRLLAITHVSNVLGTEN----PLAEMIALAHQHGAKVLVDGAQA-VMH--  207 (406)
T ss_pred             cCcEEEEEecCCCCCCCHHHHHHhc--CCCcEEEEEecchhcccccC----CHHHHHHHHHHcCCEEEEEcccc-cCc--
Confidence            45667777643     789999998  44689999999999999987    79999999999999999999994 322  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC----------------------CCCCCCcHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----------------------GSTYGGNPLACK  148 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  148 (266)
                      ..+.+..++.+.-+.+++|.+++  ..+|+++.++++.+.+.+...                      ...-+.+..+..
T Consensus       208 ~~~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~  285 (406)
T PRK09295        208 HPVDVQALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGII  285 (406)
T ss_pred             cccCchhcCCCEEEeehhhccCC--CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHH
Confidence            12233333433333446696662  348999998887765542111                      112256777788


Q ss_pred             HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      ++.++++.+.+   +...++.+++.+++++.|.+ +.. ..+..  ...+.   ++.|.++.   .+++++.+.|.++||
T Consensus       286 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~--~~~~~---iv~~~~~~---~~~~~~~~~L~~~gI  356 (406)
T PRK09295        286 GLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGP--QNRLG---VIAFNLGK---HHAYDVGSFLDNYGI  356 (406)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCC--CCCce---EEEEEECC---cCHHHHHHHHHhCCe
Confidence            88888888765   35678888889999998887 432 11111  11123   77777654   356788889999999


Q ss_pred             eeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       225 ~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .++.+.            .+.+|+|++..+|++|+|++++.|+++..
T Consensus       357 ~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        357 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             EEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            997542            35799999999999999999999988743

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.84  E-value=1.4e-19  Score=159.02  Aligned_cols=221  Identities=16%  Similarity=0.142  Sum_probs=150.6

Q ss_pred             CCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          18 PGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        18 ~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      .+++.++++     |++++++.+  .+++++|++++++ ++|.+   .+++++|+++|++||+++|+|++|......   
T Consensus       134 ~~~~~v~~~~~~~~d~~~l~~~i--~~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~---  204 (398)
T cd00613         134 IEVVEVPSDEGGTVDLEALKEEV--SEEVAALMVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGL---  204 (398)
T ss_pred             cEEEEeccCCCCCcCHHHHHHhc--CCCeEEEEEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCC---
Confidence            677777764     678999988  5578999998865 66766   255799999999999999999988432111   


Q ss_pred             cccccCCCCcCeeeeccccc----CCchhhhhheecHHhhhccCCC-----------------------------CCCCC
Q psy6547          93 LAIHYEDVRPDIVILGKALS----GGLYPISAVLADDEVMGTLVPG-----------------------------THGST  139 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~----~g~~~~g~~~~~~~~~~~~~~~-----------------------------~~~~~  139 (266)
                      .....++.+.-+.+++|++.    || +++|++..++++.+.+...                             ....+
T Consensus       205 ~~~~~~~~d~~~~s~~K~~~p~g~Gg-p~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~  283 (398)
T cd00613         205 KPPGEYGADIVVGNLQKTGVPHGGGG-PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNI  283 (398)
T ss_pred             CChHHcCCCEEEeeccccCCCCCCCC-CceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccc
Confidence            11122343333344888873    35 7889999988877665221                             01223


Q ss_pred             CCCcHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547         140 YGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC  216 (266)
Q Consensus       140 ~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  216 (266)
                      ++.+++.+.++..+++.+..+   ++.+++++++++++++|++ ++......     +...+.+++.++...+.++.+++
T Consensus       284 ~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~  357 (398)
T cd00613         284 CTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVLPFN-----GPFFHEFVLRLPPLYGIRAEDLA  357 (398)
T ss_pred             eecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccCC-----CCeeEEEEEEcCCcchHHHHHHH
Confidence            445556666666666665543   4668899999999999988 54322111     11011345555431023678899


Q ss_pred             HHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         217 IKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       217 ~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      ++|.++||.+...   ..+.+|++++..+|++|+|++++.|
T Consensus       358 ~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         358 KALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             HhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            9999999987653   5689999999999999999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=5.1e-19  Score=154.17  Aligned_cols=224  Identities=21%  Similarity=0.261  Sum_probs=166.0

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+|+.+|.+     ++++++.++  +++++++.++.+.|.+|.+.    ++++|.++||++|+++++|.+|+ .+.  .
T Consensus       136 Ga~v~~i~~~~~g~~~~~~~~~~i--~~~Tklvais~vSn~tG~~~----pv~~I~~la~~~ga~v~VDaaq~-~~h--~  206 (405)
T COG0520         136 GAKVRVIPLDDDGLLDLDALEKLI--TPKTKLVALSHVSNVTGTVN----PVKEIAELAHEHGALVLVDAAQA-AGH--L  206 (405)
T ss_pred             CcEEEEEecCCCCCcCHHHHHHhc--CCCceEEEEECccccccccc----hHHHHHHHHHHcCCEEEEECccc-cCc--c
Confidence            4467777753     578899888  67899999999999999998    99999999999999999999994 211  1


Q ss_pred             ccccccCCCCcCeeee--cccccCCchhhhhheecHHhhhccCCCCCC------------CCC----------CCcHHHH
Q psy6547          92 LLAIHYEDVRPDIVIL--GKALSGGLYPISAVLADDEVMGTLVPGTHG------------STY----------GGNPLAC  147 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~--sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~------------~~~----------~~~~~~~  147 (266)
                      ...++.  .+.|+..|  .|++.|+ ..+|.+.+++++++.+.+...+            .++          +++....
T Consensus       207 ~idv~~--l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~  283 (405)
T COG0520         207 PIDVQE--LGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGA  283 (405)
T ss_pred             CCCchh--cCCCEEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHH
Confidence            223343  44555554  4987766 5699999999999888543111            111          4455555


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .+..++++.++.   +++.++.+++.+++.++|++ +.. ..+.......+   |++.|.+..   .++.+++..|.++|
T Consensus       284 i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~---~~vsF~v~~---~~~~dv~~~L~~~g  356 (405)
T COG0520         284 IGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRG---GIVSFNVKG---IHPHDVATLLDEKG  356 (405)
T ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCc---eEEEEEeCC---CCHHHHHHHHHhCC
Confidence            555666666554   56889999999999999998 553 22221010123   488888877   47899999999999


Q ss_pred             ceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       224 i~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      |.++.+.            ...+|+|+++++|++|+|++++.|++...
T Consensus       357 I~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         357 IAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             eEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            9988652            23399999999999999999999998764

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=2.9e-20  Score=159.55  Aligned_cols=224  Identities=12%  Similarity=0.056  Sum_probs=152.4

Q ss_pred             cCcccccCCCCCCceeecCCCHHHH-HHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547           7 PTSYNEFGPHMPGYNIIPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d~~~l-~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.....+...+.+++.++.++-..+ +..+  . +++++++..++|++|.+ ++++.+++|.    +++++||+||+|.+
T Consensus       107 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~--~-~~~~i~i~nP~NPTG~~-~s~~~l~~l~----~~~~~ii~DE~Y~~  178 (335)
T PRK14808        107 SCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--G-EGDVVFIPNPNNPTGHV-FEREEIERIL----KTGAFVALDEAYYE  178 (335)
T ss_pred             HHHHHHHHHcCCeEEEecCCCcCCCChhHc--c-CCCEEEEeCCCCCCCCC-cCHHHHHHHH----hcCCEEEEECchhh
Confidence            3334445666778888875321001 1112  2 35788888888889987 6777776665    58999999999987


Q ss_pred             cCCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          86 LGRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        86 ~~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      |.. ..... .........+.+|||.++ +| +|+||+++++++++.+....  ..++.+.+++.++..+++..+. ++.
T Consensus       179 f~~-~~~~~~~~~~~~vi~~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~  254 (335)
T PRK14808        179 FHG-ESYVDLLKKYENLAVIRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEER  254 (335)
T ss_pred             hcC-CchHHHHHhCCCEEEEEechhhccCcc-cceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHH
Confidence            731 11111 222233445556999999 89 99999999999988886533  3466778888888877764321 233


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      .+.+.+.++.+.+.|++ .+   +.. ..+.|.   |+|+.++.   .+..++.++|.++||.++.. .+++|++   ..
T Consensus       255 ~~~~~~~r~~l~~~L~~-~g---~~~-~~~~g~---f~~~~l~~---~~~~~~~~~l~~~Gi~V~~~-~~~~Ris---i~  319 (335)
T PRK14808        255 TKFIVEERERMKSALRE-MG---YRI-TDSRGN---FVFIFMEK---EEKERLLEHLRAKNIAVRSF-REGVRIT---IG  319 (335)
T ss_pred             HHHHHHHHHHHHHHHHH-CC---CEE-CCCCCe---EEEEeCCC---ccHHHHHHHHHHCCeEEEEC-CCCeEEe---cC
Confidence            44555666667777776 33   222 234577   99998874   24578999999999999976 5789999   45


Q ss_pred             CHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINT  257 (266)
Q Consensus       243 t~~~i~~~~~~l~~~  257 (266)
                      +.++.+++++.|+++
T Consensus       320 ~~~~~~~~~~~l~~~  334 (335)
T PRK14808        320 KREENDMILKELEVF  334 (335)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            789999999988753

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.84  E-value=7.7e-19  Score=154.31  Aligned_cols=234  Identities=19%  Similarity=0.176  Sum_probs=173.0

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHH--HHhcCCEEEEeccccC
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL--CSQYNVLFIADEVQTG   85 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l--~~~~g~~li~De~~~~   85 (266)
                      -++.+++.++.+     |++++++.++.+  +++++++++++.+++|.+.    ++++|.++  |+++|+++|+|++++ 
T Consensus       105 ~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~----~~~~i~~l~~~~~~g~~~vvD~v~s-  179 (401)
T PLN02409        105 RLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN----DLAGVRKLLDCAQHPALLLVDGVSS-  179 (401)
T ss_pred             HcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC----CHHHHHHHHhhhccCcEEEEEcccc-
Confidence            346677777643     689999999653  3689999999999999986    67777777  999999999999995 


Q ss_pred             cCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC----------------C--CCCCCCcHHHH
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----------------H--GSTYGGNPLAC  147 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~----------------~--~~~~~~~~~~~  147 (266)
                      ++  ...+..+.++++.-+.+.+|+++++ .++|+++.++++.+.+....                .  ...++++....
T Consensus       180 ~g--~~~id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~  256 (401)
T PLN02409        180 IG--ALDFRMDEWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLL  256 (401)
T ss_pred             cC--CccccccccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHH
Confidence            32  1223344455555555588999876 67999999998877664311                0  11346666677


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCccc-EEecCccceeeEEEEeeCccchHHHHHHHHH-HC
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFK-LSSGGLKKSINTLILSVSAILEVYDVCIKMK-DA  222 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~  222 (266)
                      .++..+++.+..   ++.+++.+++.+++++.|++ ++...+... ....+.   ++++.+++  +.++.++.+.|. ++
T Consensus       257 ~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~-~g~~~~~~~~~~~s~~---v~~~~~p~--~~~~~~l~~~l~~~~  330 (401)
T PLN02409        257 YGLRAALDLIFEEGLENVIARHARLGEATRLAVEA-WGLKLCTKKPEWRSDT---VTAVVVPE--GIDSAEIVKNAWKKY  330 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCeeccCChhhcccc---eEEEeCCC--CCCHHHHHHHHHHhC
Confidence            788888887755   45788899999999999987 654333210 112334   66777776  667788988886 66


Q ss_pred             CceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         223 GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       223 gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ||.+..+    .+..+|++.+..++++|+.+++++|.+++.++.
T Consensus       331 ~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        331 NLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             CEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            9999865    357899999999999999999999999998753

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.83  E-value=1e-18  Score=153.85  Aligned_cols=228  Identities=15%  Similarity=0.117  Sum_probs=160.9

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|++++++.+  .++++++++..+++++|.+.    ++++|.++|+++|+++++|++|+ .+.  
T Consensus       132 ~g~~~~~v~~~~~~~~~~~~l~~~i--~~~~~lv~~~~~~~~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~g~--  202 (403)
T TIGR01979       132 TGATLKFIPLDDDGTLDLDDLEKLL--TEKTKLVAITHVSNVLGTVN----PVEEIAKLAHQVGAKVLVDGAQA-VPH--  202 (403)
T ss_pred             cCcEEEEEecCCCCCCCHHHHHHHh--ccCCeEEEEEcccccccccC----CHHHHHHHHHHcCCEEEEEchhh-cCc--
Confidence            4566667764     2689999998  45789999998899999987    79999999999999999999994 221  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPLACKL  149 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a  149 (266)
                      ..+....++.+.-+.+++|.++ + ..+|++.+++++.+.+.+...+                     ..-+.+...+.+
T Consensus       203 ~~~~~~~~~~d~~~~s~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a  280 (403)
T TIGR01979       203 MPVDVQALDCDFYVFSGHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIG  280 (403)
T ss_pred             cccCccccCCCEEEEecccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHH
Confidence            1223333444443445789876 2 3488898888877766432110                     111345556677


Q ss_pred             HHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccc-cCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         150 AMTALDVILE---ENMIENAYKMGEIFRSELSSPAN-KSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       150 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      +..+++.+..   +.+.++..++++++++.|++ +. ...+.. .....+.   ++.|.++.   .+..++.+.|.++||
T Consensus       281 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~---~v~~~~~~---~~~~~~~~~L~~~gI  353 (403)
T TIGR01979       281 LGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGG---IISFNVEG---VHPHDVGTILDEEGI  353 (403)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCc---eEEEEeCC---cCHHHHHHHHhhCCE
Confidence            7777777654   35778888999999998887 43 222211 0111244   77787754   356789999999999


Q ss_pred             eeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++++.            .+++|++++..+|++|++++++.|+++++.+
T Consensus       354 ~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       354 AVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             EEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            997642            5789999999999999999999999877653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.83  E-value=1.5e-19  Score=156.84  Aligned_cols=230  Identities=13%  Similarity=0.049  Sum_probs=149.6

Q ss_pred             CcccccCCCCCCceeecCCC-------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547           8 TSYNEFGPHMPGYNIIPYND-------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d-------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      .+...+..++.+++.++..+       ..+++++.++.+++++++++.++|++|.+ ++   .++|.++++++++ +|+|
T Consensus       109 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~-~~---~~~l~~l~~~~~~-~IiD  183 (360)
T PRK07392        109 DYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPHNPTGKL-WS---REAILPLLEQFAL-VVVD  183 (360)
T ss_pred             HHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCCCCCCCC-cC---HHHHHHHHHHCCE-EEEE
Confidence            33444556677888877531       23455554433456788877789999988 55   4566777788885 6669


Q ss_pred             ccccCcCCcCcccc----cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          81 EVQTGLGRTGKLLA----IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        81 e~~~~~~~~g~~~~----~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      |+|.+|...+...+    .........+.+|||.++ +| +|+||+++++++++.+....  ..++.+.+++.++..+++
T Consensus       184 E~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~  260 (360)
T PRK07392        184 EAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALA  260 (360)
T ss_pred             CchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc
Confidence            99988744332111    112222344555999999 99 99999999998888776432  346788889888888875


Q ss_pred             HHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC----
Q psy6547         156 VIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI----  229 (266)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~----  229 (266)
                      ... .+...+.++++++.+.+.|+. +.  .+.. ..+.|+   |+|+.++.    ++.++++++ .++||.+.|+    
T Consensus       261 ~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~~~~~~---fl~~~~~~----~~~~l~~~ll~~~gv~v~pg~~f~  329 (360)
T PRK07392        261 DRDFQQQTWAWLPPAREALFQGLAS-LP--GLTP-LPSAAN---FLLVQSQG----SALQLQEKLLQQHRILIRDCLSFP  329 (360)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHh-CC--CcEE-CCCCCC---EEEEEcCC----CHHHHHHHHHhhCCEEEEeCCCCC
Confidence            321 122344566667777777766 32  2222 234567   88877754    567888886 5679999876    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        +.+++|++..   +.++.+++.+.|++.++
T Consensus       330 ~~~~~~iRi~~~---~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        330 ELGDRYFRVAVR---TEAENQRLLEALAAILA  358 (360)
T ss_pred             CCCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence              2379999933   45555666666665543

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.83  E-value=1.5e-19  Score=158.72  Aligned_cols=237  Identities=17%  Similarity=0.144  Sum_probs=156.8

Q ss_pred             cCCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      .++|.....+.-.+.+++.++.       .|++++++.+++.+ +.+++++.+.+|++|.+ ++.+.+++|+++|++||+
T Consensus       128 P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~  206 (396)
T PRK09257        128 PTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGAD-LTPEQWDELAELLKERGL  206 (396)
T ss_pred             CCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCc
Confidence            3455566667778889998874       26889999886533 34555556678888877 999999999999999999


Q ss_pred             EEEEeccccCcCCc-Cc-ccc---ccc-CCCCcCeeeeccccc-CCchhhhhhee---cHH----hhhccCCCCCCCCCC
Q psy6547          76 LFIADEVQTGLGRT-GK-LLA---IHY-EDVRPDIVILGKALS-GGLYPISAVLA---DDE----VMGTLVPGTHGSTYG  141 (266)
Q Consensus        76 ~li~De~~~~~~~~-g~-~~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~----~~~~~~~~~~~~~~~  141 (266)
                      +||+||+|.+|... +. ..+   +.. ......+.+|||.++ +| +|+||+++   +++    +.+.+.........+
T Consensus       207 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (396)
T PRK09257        207 IPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSN  285 (396)
T ss_pred             EEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence            99999999887532 11 111   111 123345566999999 59 99999873   333    333332222233334


Q ss_pred             CcHHHHHHHHHHHHHH------hh--ccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchH
Q psy6547         142 GNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      .+++.+.++...++..      ..  ++.+++++++++.+.+.|++ .... .+....+..|+   ++|+.++.      
T Consensus       286 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~-~~~~~~~~~~~p~gg~---~~w~~l~~------  355 (396)
T PRK09257        286 PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKA-KGPSRDFDFIARQRGM---FSYSGLTP------  355 (396)
T ss_pred             CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccccceE---EEecCCCH------
Confidence            5677777776666421      11  23566777788888888877 4321 23332345677   88886632      


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +.+.+.+.++||.+.|.+    |++++ +.+++++++++++|.++
T Consensus       356 ~~~~~l~~~~~V~~~p~~----ri~~~-~~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        356 EQVDRLREEFGVYAVGSG----RINVA-GLNESNIDYVAEAIAAV  395 (396)
T ss_pred             HHHHHHHHcCCEEEcCCC----eEEEe-eCCHHHHHHHHHHHHhh
Confidence            333444457799998852    88854 37999999999999875

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.83  E-value=8.6e-19  Score=153.99  Aligned_cols=221  Identities=14%  Similarity=0.093  Sum_probs=150.4

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++.+      |++++++.+  ++++++++++.++|++|.+.    ++++|.++|+++|+++++|++|. .+ .
T Consensus       128 ~g~~~~~~~~~~~~~~~~~~~l~~~i--~~~~~lv~i~~~~n~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~~-~  199 (397)
T TIGR01976       128 AGAKVKWARVDEATGELHPDDLASLL--SPRTRLVAVTAASNTLGSIV----DLAAITELVHAAGALVVVDAVHY-AP-H  199 (397)
T ss_pred             cCCEEEEEeccccCCCcCHHHHHHhc--CCCceEEEEeCCCCCCCccC----CHHHHHHHHHHcCCEEEEehhhh-cc-c
Confidence            46666766543      689999999  45689999999999999986    89999999999999999999984 21 1


Q ss_pred             CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC----------CCCCCcHHHHHHHHHHHHHHhh
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG----------STYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                       ..+....++.+.-+.+++|+++   .++|++++++++.+.+.+....          ..-+.+.....+..++++.+..
T Consensus       200 -~~~~~~~~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~  275 (397)
T TIGR01976       200 -GLIDVQATGADFLTCSAYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAG  275 (397)
T ss_pred             -cCCCHHHcCCCEEEEechhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHH
Confidence             1223333444433445889984   4689999999888776643211          1113344455566666666543


Q ss_pred             c-----------------cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547         160 E-----------------NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD  221 (266)
Q Consensus       160 ~-----------------~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  221 (266)
                      .                 ...++..++.+++++.|++ ++. ..+.. ..+ ...+|++.+.+..   .++.+++++|.+
T Consensus       276 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~l~~~L~~  349 (397)
T TIGR01976       276 LGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGV-ARL-AARVPTVSFTVHG---LPPQRVVRRLAD  349 (397)
T ss_pred             hCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCC-CCc-cCCCceEEEEeCC---cCHHHHHHHHHH
Confidence            2                 2355566777788888776 432 11111 000 1122377776643   357889999999


Q ss_pred             CCceeccC---------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         222 AGLVTKPI---------------SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       222 ~gi~~~~~---------------~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      +||.++.+               ..+++|+|++..+|++|++++++.|
T Consensus       350 ~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       350 QGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            99999754               2468999999999999999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=1.5e-19  Score=156.37  Aligned_cols=220  Identities=19%  Similarity=0.180  Sum_probs=150.6

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..-++.+++.+|.+     |++.++ .+   +++++++++.++|++|.+ ++.+.+++|.+.|+  +++||+||+|..|.
T Consensus       119 ~~~~g~~v~~v~~~~~~~~~~~~l~-~~---~~~~li~i~nP~NPTG~~-~~~~~l~~l~~~~~--~~~vivDeay~~~~  191 (354)
T PRK04635        119 AETFNVGVKALPLTADYQLPLDYIE-QL---DGAKLVFICNPNNPTGTV-IDRADIEQLIEMTP--DAIVVVDEAYIEFC  191 (354)
T ss_pred             HHHcCCEEEEEecCCCCCCCHHHHH-hc---cCCCEEEEeCCCCCCCcc-CCHHHHHHHHHhCC--CcEEEEeCchHhhc
Confidence            34567778887753     466665 23   367899988889999987 78888888887765  49999999998774


Q ss_pred             CcCccccc-ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccH
Q psy6547          88 RTGKLLAI-HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENM  162 (266)
Q Consensus        88 ~~g~~~~~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~  162 (266)
                      ........ ........+.+|||+++ +| +|+||+++++++.+.+...  ...++.+.+.+.++.++++....   ++.
T Consensus       192 ~~~s~~~~~~~~~~~iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  268 (354)
T PRK04635        192 PEYSVADLLASYPNLVVLRTLSKAFALAG-ARCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQ  268 (354)
T ss_pred             cCcchHHHHhhCCCEEEEechHHHhhhhH-HHHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHH
Confidence            22111111 11112223445999998 89 9999999999988877642  23455666677777776643211   223


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEec
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSP  238 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~  238 (266)
                      .++++++++.+.+.|++ ++.  +.. .++.|.   |+|+.+++     ..++.+.|.++||.++..+    .+++|++ 
T Consensus       269 ~~~~~~~r~~l~~~L~~-~~~--~~~-~~~~g~---f~~~~~~~-----~~~~~~~l~~~gv~v~~~~~~~~~~~lRis-  335 (354)
T PRK04635        269 VLDLNAQGARLQAALSM-YGG--AKV-LEGNGN---YVLAKFDD-----VDAVFKALWDAGIVARAYKDPRLANCIRFS-  335 (354)
T ss_pred             HHHHHHHHHHHHHHHHh-CCC--ceE-CCCCCc---EEEEECCC-----HHHHHHHHHHCCEEEEECCCCCCCCeEEEE-
Confidence            45566677778888877 431  222 233467   88887753     5678889999999997542    5789999 


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINT  257 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~  257 (266)
                        ..+++++++++++|++.
T Consensus       336 --~~~~e~~~~l~~al~~~  352 (354)
T PRK04635        336 --FSNRAETDKLIGLIRNQ  352 (354)
T ss_pred             --eCCHHHHHHHHHHHHHh
Confidence              35899999999998753

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.83  E-value=1.5e-18  Score=151.17  Aligned_cols=219  Identities=16%  Similarity=0.188  Sum_probs=157.4

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+.+++.++.+     |++++++.+.  +++++|++..+++++|.+.    ++++|.++|+++|+++++|++|+ ++. 
T Consensus       111 ~~g~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~li~D~a~~-~~~-  182 (373)
T cd06453         111 RTGAKLKVVPVDDDGQLDLEALEKLLT--ERTKLVAVTHVSNVLGTIN----PVKEIGEIAHEAGVPVLVDGAQS-AGH-  182 (373)
T ss_pred             hcCcEEEEeecCCCCCcCHHHHHHHhc--CCceEEEEeCcccccCCcC----CHHHHHHHHHHcCCEEEEEhhhh-cCc-
Confidence            446677778754     7899999994  4688999988888899886    78999999999999999999995 221 


Q ss_pred             CcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPLA  146 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  146 (266)
                       ..+...  ...+|++++|  |++++  .++|++++++++.+.+.....+                     ...+++...
T Consensus       183 -~~~~~~--~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~  257 (373)
T cd06453         183 -MPVDVQ--DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAG  257 (373)
T ss_pred             -eeeecc--ccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHH
Confidence             112222  3456788777  99885  4589999998888776643211                     112345555


Q ss_pred             HHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         147 CKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       147 ~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      +.+..++++.+..+   .+.++.+++.+++++.+++ ++. ..+.. ....+.   ++.|.++.   .+..++.+.|.++
T Consensus       258 ~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-~~~~~~---~~~~~~~~---~~~~~i~~~l~~~  329 (373)
T cd06453         258 AIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGD-AEDRAG---VVSFNLEG---IHPHDVATILDQY  329 (373)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCC-ccccCC---eEEEEECC---cCHHHHHHHHHHC
Confidence            66667777777654   4567777888888888887 532 22211 122344   78888754   4678899999999


Q ss_pred             CceeccCC------------CCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         223 GLVTKPIS------------NNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       223 gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      ||.+.++.            .+++|++++..+|++|+|++++.|
T Consensus       330 gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         330 GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            99987532            478999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.83  E-value=1.4e-18  Score=153.82  Aligned_cols=229  Identities=12%  Similarity=0.085  Sum_probs=162.5

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++++|++|. ++.  
T Consensus       146 ~g~~v~~v~~~~~~~~~~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~I~~l~~~~g~~vivD~a~~-~g~--  216 (424)
T PLN02855        146 TGAVLKFVGLTPDEVLDVEQLKELL--SEKTKLVATHHVSNVLGSIL----PVEDIVHWAHAVGAKVLVDACQS-VPH--  216 (424)
T ss_pred             cCCEEEEEecCCCCCcCHHHHHHHh--ccCceEEEEeCccccccccC----CHHHHHHHHHHcCCEEEEEhhhh-cCC--
Confidence            45677777643     789999999  44789999999999999987    78999999999999999999994 321  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC---------------------CCCCCCcHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---------------------GSTYGGNPLACKL  149 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a  149 (266)
                      ..+....++.+.-+.+++|.++ + .++|++.+++++.+.+.+...                     ...-+.+....++
T Consensus       217 ~~~~~~~~~~d~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~  294 (424)
T PLN02855        217 MPVDVQTLGADFLVASSHKMCG-P-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIG  294 (424)
T ss_pred             cCCCchhcCCCEEEeecccccC-C-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHH
Confidence            1223333443333445889554 3 358999999888776653210                     1111345556667


Q ss_pred             HHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccc-cCCCcccE---EecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         150 AMTALDVILE---ENMIENAYKMGEIFRSELSSPAN-KSKASFKL---SSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       150 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      +.++++.+..   ++..++..++.+++++.|++ +. ...+....   ...+.   ++.|.++.   .+..++.+.|.++
T Consensus       295 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~---~v~~~~~~---~~~~~v~~~L~~~  367 (424)
T PLN02855        295 LGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAA---LCAFNVEG---IHPTDLSTFLDQQ  367 (424)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCccc---EEEEEECC---cCHHHHHHHhccc
Confidence            7777876654   45778888899999998887 43 22221100   01233   78888754   3577899999877


Q ss_pred             -CceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         223 -GLVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       223 -gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       ||.++.+.            .+++|+|++..+|++|++++++.|+++++.+.
T Consensus       368 ~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        368 HGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             CCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence             99988542            36899999999999999999999999987754

>PRK08354 putative aminotransferase; Provisional

Probab=99.83  E-value=4.4e-19  Score=150.85  Aligned_cols=215  Identities=14%  Similarity=0.103  Sum_probs=137.2

Q ss_pred             cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547           9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ....+.-.+.+++.++ .|++.+++.++  +...+++++| +|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|..
T Consensus        90 ~~~~~~~~g~~~~~~~-~d~~~l~~~~~--~~~~vi~~~P-~NPTG~~-~~~~~l~~l~~~a~~~~~~li~De~y~~f~~  164 (311)
T PRK08354         90 YERVARFFAARIIKGP-NDPEKLEELVE--RNSVVFFCNP-NNPDGKF-YNFKELKPLLDAVEDRNALLILDEAFIDFVK  164 (311)
T ss_pred             HHHHHHHcCCEEeecC-CCHHHHHHhhc--CCCEEEEecC-CCCCCCc-cCHHHHHHHHHHhhhcCcEEEEeCcchhccc
Confidence            3344455666776664 47899998884  2223444555 6888876 9999999999999999999999999988743


Q ss_pred             cCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                      .+...  . ......+.+|||.++ +| +|+||+++..+   .++...  ..+..+...++++...++    +. .++++
T Consensus       165 ~~~~~--~-~~~vi~~~S~SK~~~l~G-lRiG~~v~~~~---~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~  230 (311)
T PRK08354        165 KPESP--E-GENIIKLRTFTKSYGLPG-IRVGYVKGFEE---AFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLR  230 (311)
T ss_pred             ccccc--C-CCcEEEEeccHhhcCCcc-ceeeeeeehHH---HHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHH
Confidence            33211  1 233344556999999 99 99999998333   333222  234445555555544443    11 23444


Q ss_pred             HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCCCC
Q psy6547         168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNIT  243 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~~t  243 (266)
                      +..+.+++..+. +.....   .++.|.   |+++.+.     ++.++++.|+++||.+.++.    ++++|++.   .+
T Consensus       231 ~~~~~~~~~~~~-l~~~l~---~~~~~~---~~~~~~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~---~~  295 (311)
T PRK08354        231 KTMPLIWREKER-FEKALY---VKSDAN---FFIKDVG-----DAEKFVEFLKRNGILVRDCTSFGLPGYIRFSV---RD  295 (311)
T ss_pred             HHHHHHHHHHHH-HHHhcC---CCCCCc---EEEEECC-----CHHHHHHHHHHCCeEEEecccCCCCCeEEEEe---CC
Confidence            444444444443 211111   224455   7776543     35789999999999999863    48999993   35


Q ss_pred             HHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINT  257 (266)
Q Consensus       244 ~~~i~~~~~~l~~~  257 (266)
                      .++.+++++.|++.
T Consensus       296 ~~~~~~l~~al~~~  309 (311)
T PRK08354        296 REENEKLIRALREW  309 (311)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66677777777664

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.82  E-value=1.3e-18  Score=152.16  Aligned_cols=233  Identities=12%  Similarity=0.086  Sum_probs=155.9

Q ss_pred             CCCCCceeecC-------CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          15 PHMPGYNIIPY-------NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        15 ~~~~~v~~~~~-------~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      -.+.+++.++.       .|++++++.++++     +++++|+++.+++++|.+.    ++++|.++|++||+++++|++
T Consensus       121 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~----~l~~I~~la~~~g~~livD~a  196 (387)
T PRK09331        121 RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA----DAKKVAKVAHEYGIPFLLNGA  196 (387)
T ss_pred             HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc----cHHHHHHHHHHcCCEEEEECC
Confidence            34667777776       4799999999643     4689999998888888876    899999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCC------CC--CCcHHHHHHHHHHH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS------TY--GGNPLACKLAMTAL  154 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~a~~~~l  154 (266)
                      |+ ++..  ++....++.+..+.+++|+++++ .++|++++++++++.+.......      .+  +..+....++.+++
T Consensus       197 ~~-~g~~--~~~~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal  272 (387)
T PRK09331        197 YT-VGRM--PVDGKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF  272 (387)
T ss_pred             cc-cCCc--CCCHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHH
Confidence            94 2211  22333456666666799999977 78999999998887765421100      01  11222334444555


Q ss_pred             HHHhh-ccHHHHHHHHHHHHHHHhhccc-ccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCcee
Q psy6547         155 DVILE-ENMIENAYKMGEIFRSELSSPA-NKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~  226 (266)
                      +.+.. .+.+++..++.+++++.|.+ + +...+.. .....   |++.++.+..      ...++.++.++|.++||..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~L~~-l~g~~~~~~-~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~  347 (387)
T PRK09331        273 PHVVERVKRWDEEVKKARWFVDELEK-IEGFKQLGE-KPRNH---DLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG  347 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecc-CcCcC---CeEEEeCCchhHHhhhccccchhHHHHHHHcCceE
Confidence            54432 23455556778888899888 5 3222221 11222   3676665421      1223467999999999996


Q ss_pred             ccCCCC-EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         227 KPISNN-IIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       227 ~~~~~~-~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+.+.+ .+|+. +..+++++++++++.|+++++++
T Consensus       348 ~~~~~~~i~ri~-~~g~t~~di~~l~~aL~~i~~~~  382 (387)
T PRK09331        348 IKPGATKEFKLS-TYGLTWEQVEYVADAFKEIAEKY  382 (387)
T ss_pred             EccCCceEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence            544444 45555 44579999999999999988764

>PLN02672 methionine S-methyltransferase

Probab=99.82  E-value=4.7e-19  Score=167.70  Aligned_cols=243  Identities=14%  Similarity=0.161  Sum_probs=155.7

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      ++.+...+...+.+++.++.+       |+++|+++++......+++++|.+||+|.+ ++.+.+++|.++|++||++||
T Consensus       788 Y~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v-~S~eeLe~Llela~k~di~VI  866 (1082)
T PLN02672        788 NGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLL-YSNSEIEEILSVCAKYGARVI  866 (1082)
T ss_pred             hHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCcc-CCHHHHHHHHHHHHHcCCEEE
Confidence            344444456677888888753       578899998432233566677777889977 999999999999999999999


Q ss_pred             EeccccCcCCcCccc---ccc----cC-C-----CCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCC-CCC
Q psy6547          79 ADEVQTGLGRTGKLL---AIH----YE-D-----VRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGST-YGG  142 (266)
Q Consensus        79 ~De~~~~~~~~g~~~---~~~----~~-~-----~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~  142 (266)
                      +||+|.++...+...   ...    .. .     ....+.+|||.++ +| +|+||++++. .+.+.+........ +..
T Consensus       867 sDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~  945 (1082)
T PLN02672        867 IDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHST  945 (1082)
T ss_pred             EeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcH
Confidence            999998764433211   010    11 1     1122334999888 88 9999999864 47777754322121 122


Q ss_pred             cHHHHHHHHHHHHH----Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee----------
Q psy6547         143 NPLACKLAMTALDV----ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV----------  206 (266)
Q Consensus       143 ~~~~~~a~~~~l~~----~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------  206 (266)
                      +..++.++.+++..    +..  .+.++.++++++++.+.|++ .+   +....+..|.   ++|+.+..          
T Consensus       946 ~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~-~G---i~v~~PeGGF---fLwl~l~~~l~~~~~~~~ 1018 (1082)
T PLN02672        946 LKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA-CG---WDVLEPQGGI---SMVAKPSAYLGKTVKLKS 1018 (1082)
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CeEecCCcEE---EEEEEccccccccccccc
Confidence            23333333332210    111  23445567777777777776 43   2221223455   66665421          


Q ss_pred             C-----ccchHHHHHHHHHHC-CceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         207 S-----AILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       207 ~-----~~~~~~~~~~~l~~~-gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .     .+.+..+++++|+++ ||.+.|+    ..+++|++  +..+++++++++++|.++.+
T Consensus      1019 ~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1019 IDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence            0     023578899999865 9999985    34799999  45688999999999998764

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.82  E-value=1.1e-18  Score=151.92  Aligned_cols=224  Identities=13%  Similarity=0.107  Sum_probs=151.0

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC--
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--   87 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~--   87 (266)
                      -++.+++.++.+     |+++|++.++  ++++++++....+++|.+.    ++++|.++|+++|+++++|++|+++.  
T Consensus       123 ~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~~vi~~~~~~~tG~~~----~l~~I~~l~~~~g~~livD~a~~~~~~~  196 (371)
T PRK13520        123 MLGVELRRAPLDDDYRVDVKAVEDLID--DNTIGIVGIAGTTELGQVD----PIPELSKIALENGIFLHVDAAFGGFVIP  196 (371)
T ss_pred             HcCceEEEecCCCCCcCCHHHHHHHHh--hCCEEEEEEcCCcCCcccC----CHHHHHHHHHHcCCCEEEEecchhHHHH
Confidence            345677777743     7999999994  3455566555567788886    79999999999999999999997542  


Q ss_pred             --CcCcccccccCCCCcCeee--ecccccCCchhhhhhee-cHHhhhccCCCC---CC-----CCCCCcHHHHHHHHHHH
Q psy6547          88 --RTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGT---HG-----STYGGNPLACKLAMTAL  154 (266)
Q Consensus        88 --~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~---~~-----~~~~~~~~~~~a~~~~l  154 (266)
                        ..+..+.....  ..|.++  ..|+..+| .|.|+++. ++++.+.+....   ..     ...+.+...+.++.+++
T Consensus       197 ~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al  273 (371)
T PRK13520        197 FLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVM  273 (371)
T ss_pred             hhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHH
Confidence              11111222222  344444  45766566 78887765 555655543110   00     01122344567777788


Q ss_pred             HHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-
Q psy6547         155 DVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-  230 (266)
Q Consensus       155 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-  230 (266)
                      +.+..+   ++.++..++++++++.|++ ++...+   ......   ++.+.++     +++++.++|.++||.+++.. 
T Consensus       274 ~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~v~~~~~-----~~~~v~~~L~~~gi~v~~~~~  341 (371)
T PRK13520        274 KYLGREGYRKVVERCMENTRWLAEELKE-RGFEPV---IEPVLN---IVAFDDP-----NPDEVREKLRERGWRVSVTRC  341 (371)
T ss_pred             hhhcHhHHHHHHHHHHHHHHHHHHHHHh-CCCEEe---cCCCce---EEEEecC-----CHHHHHHHHHHCCceeccCCC
Confidence            776554   4778888899999999887 432111   111223   6666654     36789999999999998754 


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+++|++++..+|++|++++++.|+++++
T Consensus       342 ~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        342 PEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            56899998888999999999999998764

>TIGR01814 kynureninase kynureninase

Probab=99.81  E-value=5.9e-18  Score=149.10  Aligned_cols=216  Identities=13%  Similarity=0.169  Sum_probs=152.8

Q ss_pred             CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |++++++.+++ .+++++|+++++++.+|.+.    ++++|.++|+++|+++++|++|+ +|..  ++....++++..+.
T Consensus       157 ~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~----~~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~gvD~~~~  229 (406)
T TIGR01814       157 RLEDILDTIEKNGDDIAVILLSGVQYYTGQLF----DMAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWGVDFACW  229 (406)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEeccccccceec----CHHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCCCCEEEE
Confidence            68899988854 35799999999999999997    89999999999999999999995 3221  33445556666666


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCCCCC-----------------------CCCCCcHHHHHHHHHHHHHHhh---
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPGTHG-----------------------STYGGNPLACKLAMTALDVILE---  159 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~l~~~~~---  159 (266)
                      +..|++.+| .. |.+...++....+.+...+                       ...+++..+..++.++++.+..   
T Consensus       230 s~hK~l~g~-pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~  307 (406)
T TIGR01814       230 CTYKYLNAG-PG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGM  307 (406)
T ss_pred             cCccccCCC-CC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCH
Confidence            688999876 44 5444433332222221000                       0123566677778888888755   


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccc-cCCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPAN-KSKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNII  234 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~i  234 (266)
                      +...++..++.+++++.|++..+ .+.+..    .....+.   ++.|.++.    +++++.+.|.++||.+.....+.+
T Consensus       308 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~---~v~~~~~~----~~~~~~~~L~~~gi~v~~~~~~~i  380 (406)
T TIGR01814       308 EALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGC---QLSLTHPV----PGKAVFQALIKRGVIGDKREPSVI  380 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCC---eEEEEecC----CHHHHHHHHHHCCEEEeccCCCeE
Confidence            45778888899999988877211 011111    0111234   67777762    467899999999999887666899


Q ss_pred             EEec-cCCCCHHHHHHHHHHHHHHH
Q psy6547         235 RLSP-ALNITEQELREGLDIIINTI  258 (266)
Q Consensus       235 R~~~-~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |+|+ +..+|++|+++++++|++.+
T Consensus       381 RiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       381 RVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EEechhccCCHHHHHHHHHHHHHHh
Confidence            9999 68999999999999998865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.81  E-value=7.2e-18  Score=147.29  Aligned_cols=225  Identities=15%  Similarity=0.150  Sum_probs=152.9

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|++++++.+  .+++++++++.++|++|.+.    ++++|.++|+++|+++++|++|+ ++.  
T Consensus       109 ~G~~v~~v~~~~~g~~~~~~l~~~i--~~~~~lv~i~~~~n~tG~~~----~~~~I~~l~~~~g~~vivD~~~~-~g~--  179 (379)
T TIGR03402       109 QGYKVTYLPVDEEGRLDLEELRAAI--TDDTALVSVMWANNETGTIF----PIEEIGEIAKERGALFHTDAVQA-VGK--  179 (379)
T ss_pred             cCCEEEEEccCCCCcCCHHHHHHhc--CCCcEEEEEEcccCCeeecc----cHHHHHHHHHHcCCEEEEECccc-ccc--
Confidence            4667777764     3789999999  44688898888899999886    78899999999999999999995 321  


Q ss_pred             cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547          91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                      .  ..+.....+|++++|  |.++ + ..+|++..+++..  +.+...       ....+.+..+..+..++++.+..  
T Consensus       180 ~--~~~~~~~~~D~~~~s~~K~~g-p-~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~  253 (379)
T TIGR03402       180 I--PIDLKEMNIDMLSLSGHKLHG-P-KGVGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHL  253 (379)
T ss_pred             c--ccCcccCCCCEEEEcHHHcCC-C-CceEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhH
Confidence            1  222333567888877  9444 3 4578877765431  222111       12335566667777777776644  


Q ss_pred             ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--------  230 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------  230 (266)
                      ++..++.+++.+++++.|.+.+.. ..........+.   ++.+.+..   .++.++...|.++||.++.+.        
T Consensus       254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gI~v~~g~~c~~~~~~  327 (379)
T TIGR03402       254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPN---TVNISFEY---IEGEAILLLLDMEGICASSGSACTSGSLE  327 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCC---EEEEEecC---CCHHHHHHhhccCCEEEEchhhcCCCCCC
Confidence            345577777888888877631221 111110001112   45444433   357789999999999998641        


Q ss_pred             ---------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 ---------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ---------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                     .+.+|+|++..+|++|++++++.|+++++++
T Consensus       328 ~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       328 PSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL  373 (379)
T ss_pred             cCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                           3689999999999999999999999988764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.80  E-value=3.6e-18  Score=149.25  Aligned_cols=229  Identities=17%  Similarity=0.178  Sum_probs=158.8

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+  .+++++++++.++|++|.+.    ++++|.++|+++|+++++|+++ .++.. 
T Consensus       111 ~g~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~~~~~~n~tG~~~----~~~~I~~l~~~~~~~vivD~~~-~~g~~-  182 (381)
T PRK02948        111 QGYTVTEIPVDKSGLIRLVDLERAI--TPDTVLASIQHANSEIGTIQ----PIAEIGALLKKYNVLFHSDCVQ-TFGKL-  182 (381)
T ss_pred             CCCEEEEEeeCCCCCCCHHHHHHhc--CCCCEEEEEECCcCCcEeeh----hHHHHHHHHHHcCCEEEEEChh-hcccc-
Confidence            3556666653     3789999998  34678999999999999987    7999999999999999999877 35332 


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCC----CCCCCCCCcHHHHHHHHHHHHHHhh--ccHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPG----THGSTYGGNPLACKLAMTALDVILE--ENMI  163 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~  163 (266)
                       .+....++.+.-+.+++|.+++  ..+|+++.++++ +......    .....++.+.+++.++.++++....  ++..
T Consensus       183 -~~~~~~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~  259 (381)
T PRK02948        183 -PIDVFEMGIDSLSVSAHKIYGP--KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEES  259 (381)
T ss_pred             -ccCcccCCCCEEEecHHhcCCC--CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence             2233445555445558898872  237888777654 1111100    1123456788888888888876533  4567


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCcc--ceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLK--KSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----------  230 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------  230 (266)
                      ++++++++++++.|++ ++....   ..+...+  ..++.+.++.   .++.++..+|.++||.++.+.           
T Consensus       260 ~~~~~~~~~l~~~L~~-~~~~v~---~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~  332 (381)
T PRK02948        260 LRFKELRSYFLEQIQT-LPLPIE---VEGHSTSCLPHIIGVTIKG---IEGQYTMLECNRRGIAISTGSACQVGKQEPSK  332 (381)
T ss_pred             HHHHHHHHHHHHHHhc-CCCCEE---EeCCCccCcCCEEEEEeCC---CCHHHHHHhcccCCEEEEchHhcCCCCCCCCH
Confidence            8888999999999988 543211   1111110  0144555442   356788888989999998532           


Q ss_pred             ------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 ------------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                                  .+++|++++..+|++|++++++.|++.++++-
T Consensus       333 ~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~  376 (381)
T PRK02948        333 TMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY  376 (381)
T ss_pred             HHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                        36899999999999999999999999887653

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.80  E-value=8.9e-19  Score=150.59  Aligned_cols=227  Identities=15%  Similarity=0.101  Sum_probs=150.3

Q ss_pred             CCCCceeecC----CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          16 HMPGYNIIPY----NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        16 ~~~~v~~~~~----~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      .+.+++.++.    .|+++|++++.+.     ++++++++++++|+ |.+ ++.+++++|+++|+++|+++|+||+|..+
T Consensus        94 ~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~-~~~~~l~~i~~~~~~~~~~livDea~~~~  171 (338)
T cd06502          94 SGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTV-YPLDELKAISALAKENGLPLHLDGARLAN  171 (338)
T ss_pred             cCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccc-cCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence            4666777765    4799999999542     26788888877765 554 58999999999999999999999998422


Q ss_pred             --CCcCcccccccCCCCcCeeeecccccCCchhhhh-heecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          87 --GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA-VLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        87 --~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                        ...|........+.+.-+.++||+++..   .|+ +++++++.+.+....  ...+++.+++.++++..+|+.-...+
T Consensus       172 ~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~  248 (338)
T cd06502         172 AAAALGVALKTYKSGVDSVSFCLSKGGGAP---VGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLR  248 (338)
T ss_pred             HHHhcCCCHHHHHhcCCEEEEeccccCCCc---cceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHH
Confidence              1122211111122333344599999732   344 556888877765432  22445556677777777665321234


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH---HCCceeccCCCCEEEEec
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK---DAGLVTKPISNNIIRLSP  238 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gi~~~~~~~~~iR~~~  238 (266)
                      ..+++.++++++.+.|++ ++...    ....+.   ++.+..+.. .....++.+.+.   ++|+.+.+.+.+++|+++
T Consensus       249 ~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~v~~~~~-~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~  319 (338)
T cd06502         249 RLRHDHEMARRLAEALEE-LGGLE----SEVQTN---IVLLDPVEA-NAVFVELSKEAIERRGEGVLFYAWGEGGVRFVT  319 (338)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCCc----ccccCC---eEEEecCCc-cHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEe
Confidence            567778888889998887 54311    122344   676666431 222344555554   689999887669999999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIIN  256 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~  256 (266)
                      ++.+++++++++++++++
T Consensus       320 ~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         320 HWDTTEEDVDELLSALKA  337 (338)
T ss_pred             ecCCCHHHHHHHHHHHhc
Confidence            999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=2.8e-17  Score=139.93  Aligned_cols=234  Identities=17%  Similarity=0.185  Sum_probs=183.0

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      -++.+++.+...     |++++++.|+++++++++.+.++-+++|.+.    ++++|+++|++||.++|+|.+-+ +  -
T Consensus       101 ~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln----pl~~I~~~~k~~g~l~iVDaVsS-~--G  173 (383)
T COG0075         101 RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN----PLKEIAKAAKEHGALLIVDAVSS-L--G  173 (383)
T ss_pred             HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC----cHHHHHHHHHHcCCEEEEEeccc-C--C
Confidence            345556555533     8999999998888899999999999999987    99999999999999999998774 4  3


Q ss_pred             CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----------------C-CCCCCCCcHHHHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----------------T-HGSTYGGNPLACKLAM  151 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~a~~  151 (266)
                      |..+..+.||++.-+...-|++++. -.++++..+++..+.+...                 . ....++++.....+..
T Consensus       174 g~~~~vd~wgiDv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~  252 (383)
T COG0075         174 GEPLKVDEWGIDVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALR  252 (383)
T ss_pred             CcccchhhcCccEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence            4567788889888777788999954 4589999999888777532                 1 3455566666777888


Q ss_pred             HHHHHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceec
Q psy6547         152 TALDVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTK  227 (266)
Q Consensus       152 ~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~  227 (266)
                      .+|+.+..++   .+++.+++.+.+++.++. ++...+.........   +..+.++.  +.+.+++...++ +.|+.+.
T Consensus       253 ~al~~i~~EGle~r~~RH~~~~~a~r~~~~a-lGl~~~~~~~~~s~t---vta~~~P~--g~~~~~~~~~~~~~~g~~i~  326 (383)
T COG0075         253 EALDLILEEGLEARIARHRRLAEALRAGLEA-LGLELFADPERRSPT---VTAIKVPE--GVDDKKVRRALLKEYGVEIA  326 (383)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCccccCcccCCCc---eEEEECCC--CCCcHHHHHHHHHhCCEEec
Confidence            9999888764   677778889999999998 876555532344455   77888887  555555555665 5599988


Q ss_pred             cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++    .+..+||......+.+++..++.+|+.++.++.
T Consensus       327 gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         327 GGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             ccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence            75    457899999999999999999999999998864

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.79  E-value=1.7e-17  Score=145.15  Aligned_cols=224  Identities=15%  Similarity=0.156  Sum_probs=154.4

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |++++++.+  .+++++++++.++|++|.+.    ++++|.++|+++|+++++|+++. ++.  
T Consensus       113 ~G~~v~~v~~~~~g~~d~~~l~~~i--~~~t~lv~~~~~~n~tG~~~----~~~~I~~la~~~g~~~ivD~a~~-~g~--  183 (382)
T TIGR03403       113 LGVEVTYLPINEQGTITAEQVREAI--TEKTALVSVMWANNETGMIF----PIKEIGEICKERGVLFHTDAVQA-IGK--  183 (382)
T ss_pred             CCCEEEEEecCCCCCCCHHHHHHhc--ccCCeEEEEEcccCCCcccc----CHHHHHHHHHHcCCEEEEechhh-cCC--
Confidence            56778888754     689999998  44678888988999999986    68999999999999999999984 321  


Q ss_pred             cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCC-------CCCCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547          91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                      .......  ..+|++++|  |.+++  ..+|++..++..  .+.+.       ......+.+..++.++..+++....  
T Consensus       184 ~~~~~~~--~~~D~~~~s~~K~~gp--~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~  257 (382)
T TIGR03403       184 IPVDVQK--AGVDFLSFSAHKFHGP--KGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYL  257 (382)
T ss_pred             CccCccc--cCCCEEEEcchhhCCC--CceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhH
Confidence            1222223  345666655  98762  225777665443  11111       1123456677777777778876544  


Q ss_pred             ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--------  230 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------  230 (266)
                      +...++++++++++.+.|++ ++. ..+.......+.   ++.|.+..   .++.++...|.++||.++.+.        
T Consensus       258 ~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~L~~~gI~v~~g~~c~~~~~~  330 (382)
T TIGR03403       258 DFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPN---TILISIKG---VEGEAMLWDLNKAGIAASTGSACASEDLE  330 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCC---EEEEEeCC---CCHHHHHHhhccCCEEEEchhccCCCCCC
Confidence            34567888888888888877 432 111110011133   66666643   467788888999999998521        


Q ss_pred             ---------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 ---------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ---------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                     .+.+|+|++..+|++|+|++++.|+++++++
T Consensus       331 ~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~  376 (382)
T TIGR03403       331 ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL  376 (382)
T ss_pred             cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                           2579999999999999999999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>KOG1359|consensus

Probab=99.79  E-value=1.2e-17  Score=134.11  Aligned_cols=217  Identities=21%  Similarity=0.256  Sum_probs=154.7

Q ss_pred             CCCHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-cCCcCcccccccCCC
Q psy6547          25 YNDVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV  100 (266)
Q Consensus        25 ~~d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~~~~g~~~~~~~~~~  100 (266)
                      |-|+.+++..+..  +.+.++|+.....++.|.+.    ++++|.+++++||.++++||+| ++ ||.+|.+-+ +.+++
T Consensus       176 h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdia----Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~v  250 (417)
T KOG1359|consen  176 HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIA----PLEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEFGV  250 (417)
T ss_pred             cchhHHHHHHHHHhhhheEEEEEecceeccCCCcc----cHHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHhCC
Confidence            4467777766643  23789999999999999998    9999999999999999999999 44 355555322 23443


Q ss_pred             --CcCee--eecccccCCchhhhhheecHHhhhccCCC----CCCCCCCCcHHHHHHHHHHHHHH-hhccHHHHHHHHHH
Q psy6547         101 --RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVI-LEENMIENAYKMGE  171 (266)
Q Consensus       101 --~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~  171 (266)
                        ++|++  +++|++||-  -.||+.++.++.+.++..    ..+.+..+..+.+  +..+++.+ .+.....+.+.+.+
T Consensus       251 m~~vdiinsTLgKAlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV~~--a~ka~dllm~s~~~i~~~~a~~q  326 (417)
T KOG1359|consen  251 MGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGM--AAKAYDLLMVSSKEIQSRQANTQ  326 (417)
T ss_pred             CCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhhhh--hHHHHHHHHhhHHHHHHHHHHHH
Confidence              44544  499999853  377899999998777643    3333333333333  33444433 33456677777777


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-------cCCCCEEEEeccCCCCH
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-------PISNNIIRLSPALNITE  244 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-------~~~~~~iR~~~~~~~t~  244 (266)
                      ++++..+. .   ++..    .|.+-|+..+.+.+  ..-+..+++.|+++||++.       |.+...||+..+..+|+
T Consensus       327 rfr~~me~-a---GftI----sg~~hPI~pv~lGd--a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~  396 (417)
T KOG1359|consen  327 RFREFMEA-A---GFTI----SGASHPICPVMLGD--ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTE  396 (417)
T ss_pred             HHHHHHHh-c---Ccee----cCCCCCccceeccc--HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCH
Confidence            77777665 2   2222    22233688888888  4567889999999999985       33567899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINT  260 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~  260 (266)
                      ||+|++++++.++.+.
T Consensus       397 edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  397 EDIDRLIEAFSEVGRF  412 (417)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>PRK10534 L-threonine aldolase; Provisional

Probab=99.78  E-value=4.2e-18  Score=146.25  Aligned_cols=211  Identities=14%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc---CcccccccCC
Q psy6547          27 DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GKLLAIHYED   99 (266)
Q Consensus        27 d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~---g~~~~~~~~~   99 (266)
                      |+++|++++..+    .++++++++.++  +|.+ ++.+.+++|.++|++||+++++||+|. |...   +.........
T Consensus       112 d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v-~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~  187 (333)
T PRK10534        112 PLDKVAAKIKPDDIHFARTRLLSLENTH--NGKV-LPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQY  187 (333)
T ss_pred             CHHHHHHhhcccCcCcccceEEEEecCC--CCee-cCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhc
Confidence            689999888432    147788877433  4766 899999999999999999999999985 3211   2111100001


Q ss_pred             CCcCeeeecccccCCchhhh-hheecHHhhhccCCCCCCC--CCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy6547         100 VRPDIVILGKALSGGLYPIS-AVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  176 (266)
Q Consensus       100 ~~~d~~~~sK~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  176 (266)
                      .+.-+++|||+++.   ++| |+++++++++.+.......  .+..+.+.++++..+|+..  .+..++..+.++++.+.
T Consensus       188 ~~~~~~s~SK~~~~---~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~  262 (333)
T PRK10534        188 CDSFTICLSKGLGT---PVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQ  262 (333)
T ss_pred             CCEEEEEeEcCCCC---cccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence            11224569998873   467 5778999888776433221  2233445566666666532  23344455567788888


Q ss_pred             hhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         177 LSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      |++ ++..   . .++.++   |+++.++.   .+..++.+.|+++||.++++  ..+|++.+..+|++++++++++|++
T Consensus       263 L~~-~g~~---~-~~~~~n---fv~~~~~~---~~~~~~~~~l~~~gi~v~~~--~~~rl~~~~r~t~e~~~~~~~~l~~  329 (333)
T PRK10534        263 LRE-AGAD---V-MRQDTN---MLFVRVGE---EQAAALGEYMRERNVLINAS--PIVRLVTHLDVSREQLAEVVAHWRA  329 (333)
T ss_pred             HHh-CCCc---c-CCCCce---EEEEECCc---hhHHHHHHHHHHcCeeecCC--ceEEEEEEeCCCHHHHHHHHHHHHH
Confidence            887 5432   2 223466   88888763   24678899999999999986  3689987777899999999999997


Q ss_pred             HHH
Q psy6547         257 TIN  259 (266)
Q Consensus       257 ~~~  259 (266)
                      ++.
T Consensus       330 ~~~  332 (333)
T PRK10534        330 FLA  332 (333)
T ss_pred             Hhc
Confidence            764

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.78  E-value=3.7e-18  Score=146.77  Aligned_cols=213  Identities=17%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.     .|++++++.+   ++++++++..++|++|.+ ++.   ++|.+++ ++++++|+||+|.+|..
T Consensus       112 ~~~g~~~~~v~~~~~~~~d~~~l~~~~---~~~~~v~~~~P~NPtG~~-~~~---~~l~~i~-~~~~~ii~De~y~~~~~  183 (337)
T PRK03967        112 KLNGIPVIDVPLKEDFTIDGERIAEKA---KNASAVFICSPNNPTGNL-QPE---EEILKVL-ETGKPVVLDEAYAEFSG  183 (337)
T ss_pred             HHcCCeEEEeecCCCCCcCHHHHHHhc---cCCCEEEEeCCCCCCCCC-CCH---HHHHHHH-hcCCEEEEECchhhhcc
Confidence            345667777664     2567787765   245677776678889987 555   4555566 47999999999987732


Q ss_pred             cCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENA  166 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~  166 (266)
                      .......+.......+.+|||.++ +| +|+||+++++++++.+....  ..++.+.+++.++..+++..+. .+..+..
T Consensus       184 ~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  260 (337)
T PRK03967        184 KSLIGLIDEYPNLILLRTFSKAFGLAG-IRAGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYI  260 (337)
T ss_pred             cchHHHHhhCCCEEEEecchHhhcchh-hhheeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            111101111222334455999999 99 99999999998888776533  3456778888888877753221 1223344


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCCC
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNIT  243 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~t  243 (266)
                      .+.++.+.+.|.+ .   .    .++.++   ++|+.++         +.+.|+++||.+++.   ..+++|++   ..+
T Consensus       261 ~~~r~~l~~~L~~-~---~----~~~~~~---~~~~~~~---------~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~  317 (337)
T PRK03967        261 IKERERVRRELGE-Y---A----YPSDAN---FLLLKLD---------AYDYLLENGIVVRKLSGRLEGHIRVT---VGK  317 (337)
T ss_pred             HHHHHHHHHHhcc-C---c----CCCCCc---EEEEhHH---------HHHHHHHCCEEEEeCCCCCCCeEEEe---cCC
Confidence            4555555555554 2   1    234566   7876552         678889999999754   34789999   336


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTINT  260 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~  260 (266)
                      .++.+++++.|+++...
T Consensus       318 ~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        318 REENDEFIKALKEIKEG  334 (337)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78888999998887654

>PRK07908 hypothetical protein; Provisional

Probab=99.78  E-value=6.3e-18  Score=146.04  Aligned_cols=218  Identities=10%  Similarity=0.068  Sum_probs=144.7

Q ss_pred             ccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          12 EFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      .+...+.+++.++.+     |++    .+  .++++++++..++|++|.+ ++.   ++|.++|+ ++.++|+||+|..+
T Consensus       112 ~~~~~G~~i~~v~~~~~~~~d~~----~l--~~~~~~i~l~np~NPTG~~-~~~---~~l~~l~~-~~~~iIvDe~y~~~  180 (349)
T PRK07908        112 ALRAAGIPVHRVVLDPPFRLDPA----AV--PDDADLVVIGNPTNPTSVL-HPA---EQLLALRR-PGRILVVDEAFADA  180 (349)
T ss_pred             HHHHcCCEEEeeccCcccCcChh----Hh--ccCCCEEEEcCCCCCCCCC-cCH---HHHHHHHh-cCCEEEEECcchhh
Confidence            344566777777653     233    23  2357788887778889988 554   46667775 47888899999876


Q ss_pred             CCcCcccccccCC--CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--h-hc
Q psy6547          87 GRTGKLLAIHYED--VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EE  160 (266)
Q Consensus        87 ~~~g~~~~~~~~~--~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~-~~  160 (266)
                      . .+...++....  ....+.+|||.++ +| +|+||+++++++++.+.....  .+..+++.+.++...++..  . -+
T Consensus       181 ~-~~~~~~l~~~~~~~~i~i~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~  256 (349)
T PRK07908        181 V-PGEPESLAGDDLPGVLVLRSLTKTWSLAG-LRVGYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAA  256 (349)
T ss_pred             c-cCCccccccccCCCEEEEeecccccCCcc-ceeeeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHH
Confidence            2 23322221111  1223345899998 99 999999999998888765332  3445666665555444310  0 12


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNII  234 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~i  234 (266)
                      +..++++++++++.+.|++ .+   +....+..|.   ++|+.+++     .+++.+.|+++||.+.++      ..+++
T Consensus       257 ~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---~~~~~~~~-----~~~~~~~l~~~gI~v~~g~~f~~~~~~~v  324 (349)
T PRK07908        257 ADAARLAADRAEMVAGLRA-VG---ARVVDPAAAP---FVLVRVPD-----AELLRKRLRERGIAVRRGDTFPGLDPDYL  324 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CC---cEeccCCCce---EEEEECCc-----HHHHHHHHHhCCEEEEECCCCCCCCCCeE
Confidence            3566677777788888877 42   2221224577   89998765     467888999999999875      25799


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      |+++   .++++++++++.|++++.
T Consensus       325 Ris~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        325 RLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             EEEe---CCCccHHHHHHHHHHHHh
Confidence            9995   478899999999988764

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.78  E-value=4.2e-17  Score=142.27  Aligned_cols=223  Identities=15%  Similarity=0.145  Sum_probs=152.2

Q ss_pred             CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.     .|++++++.+  .+++++++++.++|++|.+.    ++++|.++|+++|+++|+|++++ +|..  
T Consensus       111 g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~~v~~~~~~n~tG~~~----~~~~i~~l~~~~~~~livD~a~~-~g~~--  181 (376)
T TIGR01977       111 GVEITIVKCDNEGLISPERIKRAI--KTNTKLIVVSHASNVTGTIL----PIEEIGELAQENGIFFILDAAQT-AGVI--  181 (376)
T ss_pred             CcEEEEEecCCCCCcCHHHHHHhc--CCCCeEEEEECCCCCccccC----CHHHHHHHHHHcCCEEEEEhhhc-cCcc--
Confidence            556666653     3799999999  44688999999999999987    78999999999999999999994 3221  


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCCC----------------CCCCCCCcHHHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGT----------------HGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~~a~~~~l  154 (266)
                      .+....++.+.-+.+..|+++++ ...|+++.+++. .+.+....                .....+.+.....+..+++
T Consensus       182 ~~~~~~~~~D~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al  260 (376)
T TIGR01977       182 PIDMTELAIDMLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGI  260 (376)
T ss_pred             CCCchhcCCCEEEecccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHH
Confidence            22333344433344466998854 346666655543 22221110                0112244566677777888


Q ss_pred             HHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceecc
Q psy6547         155 DVILEE---NMIENAYKMGEIFRSELSSPANK-SKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKP  228 (266)
Q Consensus       155 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~  228 (266)
                      +.+.+.   .+.++.+++.+++++.|++ ... ..+.. .....+.   +++|.++.   .+..++.+.|.++ ||.++.
T Consensus       261 ~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~---~v~~~~~~---~~~~~~~~~L~~~~gi~v~~  333 (376)
T TIGR01977       261 KFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVG---VVSFTVEG---IDSEEVADILDEKFDIATRT  333 (376)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCC---eEEEEECC---CCHHHHHHHHhccCCEEEEc
Confidence            887764   4678888899999998887 332 11111 0111233   78888754   4678899999987 998865


Q ss_pred             C--------------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         229 I--------------SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       229 ~--------------~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +              ..+.+|++++..+|++|+++++++|++
T Consensus       334 g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       334 GLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             ccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            3              247899999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.76  E-value=2.5e-17  Score=143.54  Aligned_cols=223  Identities=13%  Similarity=0.102  Sum_probs=148.6

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC-
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-   88 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~-   88 (266)
                      .++.+++.++++     |++++++.++++ ..+++++.+ .+++|.+.    ++++|.++|+++|+++++|++|.++.. 
T Consensus       125 ~~G~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~vv~~~~-~~~tG~~~----~~~~i~~l~~~~~~~livD~a~~~~~~~  198 (373)
T TIGR03812       125 MLGLELRYAPLDEDYTVDVKDVEDLIDDN-TIGIVGIAG-TTELGQID----DIEELSKIALENGIYLHVDAAFGGFVIP  198 (373)
T ss_pred             HcCCeEEEEeeCCCCCcCHHHHHHHHhhC-cEEEEEECC-CCCCCccC----CHHHHHHHHHHcCCeEEEEcCchhHHHH
Confidence            346677778763     799999999432 234555654 56788875    899999999999999999999964310 


Q ss_pred             ---cCccc-ccccCCCCcCeee--ecccccCCchhhhhhe-ecHHhhhccCCCCCC--C------CCCCcHHHHHHHHHH
Q psy6547          89 ---TGKLL-AIHYEDVRPDIVI--LGKALSGGLYPISAVL-ADDEVMGTLVPGTHG--S------TYGGNPLACKLAMTA  153 (266)
Q Consensus        89 ---~g~~~-~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~-~~~~~~~~~~~~~~~--~------~~~~~~~~~~a~~~~  153 (266)
                         .|... ..+..-...|..+  ..|+..++ .|.|+++ .++++.+.+.....+  .      ..+.+....+++..+
T Consensus       199 ~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~  277 (373)
T TIGR03812       199 FLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAV  277 (373)
T ss_pred             HHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHH
Confidence               00000 0111101234444  44855456 6777554 577776655321111  0      013345567777788


Q ss_pred             HHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-
Q psy6547         154 LDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-  229 (266)
Q Consensus       154 l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-  229 (266)
                      ++.+..+   +..+++.++++++++.|++ ++...+.   .+...   ++.+..++     ..++.++|.++||.++.. 
T Consensus       278 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~---~~~~~---~v~~~~~~-----~~~v~~~L~~~gi~v~~~~  345 (373)
T TIGR03812       278 IKYLGREGYRKIVAECMENTRYLVEELKK-IGFEPVI---EPVLN---IVAFEVDD-----PEEVRKKLRDRGWYVSVTR  345 (373)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEc---CCCce---EEEEEeCC-----HHHHHHHHHHCCceeccCC
Confidence            8876553   4778899999999999988 5432111   12223   66666544     458999999999999876 


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      .++++|++++..+|++|++++++.|++
T Consensus       346 ~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       346 CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            567999999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.76  E-value=1.1e-16  Score=140.70  Aligned_cols=217  Identities=17%  Similarity=0.165  Sum_probs=145.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC-cccc---cccCCCCc
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLA---IHYEDVRP  102 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g-~~~~---~~~~~~~~  102 (266)
                      |+++++++++.  .++.+++....+.++ ..    ++++|+++|+++|+++++|++|+ +|..| ....   ....+++.
T Consensus       208 D~d~l~~~~~~--~~plvii~g~S~~~~-~~----dl~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~  279 (493)
T PRK13580        208 DYDEIAALARE--FKPLILVAGYSAYPR-RV----NFAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADI  279 (493)
T ss_pred             CHHHHHHHHhh--cCCEEEEeCccccCC-Cc----CHHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcE
Confidence            78999999943  455666666555444 44    89999999999999999999993 33222 1111   01112333


Q ss_pred             CeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhh
Q psy6547         103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELS  178 (266)
Q Consensus       103 d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~  178 (266)
                      -+.+++|+|.|.  +.|++++++++.+.+.... ...+ ++.+...+++..++..+.++   ++.+++.++.+++++.|.
T Consensus       280 vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~  356 (493)
T PRK13580        280 VTTTTHKTLRGP--RGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFL  356 (493)
T ss_pred             EEeCChhhccCC--CeEEEEecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            344488999654  3688999998888774221 1111 22222444444455555433   378999999999999998


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------C---CCEEEEeccC----CCCH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------S---NNIIRLSPAL----NITE  244 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~---~~~iR~~~~~----~~t~  244 (266)
                      + .+...+.     .|.++|++.+.+.+. +.....+.+.|.+.||++.+.       +   ...||++++.    .+++
T Consensus       357 ~-~G~~vv~-----ggTdshIV~V~lg~~-~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~te  429 (493)
T PRK13580        357 K-RGARLVT-----GGTDNHLVLIDVTSF-GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGS  429 (493)
T ss_pred             h-cCCCccC-----CCCCCCEEEEEeCCH-HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCH
Confidence            8 5543321     234567999999762 223456777899999998732       2   5789999887    6679


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINTM  261 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~~  261 (266)
                      +|++++++.|.++++..
T Consensus       430 edi~~iad~l~~~l~~~  446 (493)
T PRK13580        430 DEMDEVAELIVKVLSNT  446 (493)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999888653

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.75  E-value=1.7e-16  Score=137.79  Aligned_cols=230  Identities=12%  Similarity=0.078  Sum_probs=146.9

Q ss_pred             CCCCCceeecC-------CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          15 PHMPGYNIIPY-------NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        15 ~~~~~v~~~~~-------~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ..+.+++.++.       .|++++++.+++.     +++++++++++++++|.+.    ++++|.++|+++|+++|+|++
T Consensus       102 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~----~~~~i~~~~~~~~~~vivD~a  177 (361)
T cd06452         102 RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH----DAKKIAKVCHEYGVPLLLNGA  177 (361)
T ss_pred             hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec----cHHHHHHHHHHcCCeEEEECC
Confidence            34566666653       2789999988531     3688999888888888775    899999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC------CCC--CCcHHHHHHHHHHH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG------STY--GGNPLACKLAMTAL  154 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~a~~~~l  154 (266)
                      |. ++.  ..+....++.+..+.+++|+++++ .++|++++++++.+.+......      ..+  +.....+.++.+++
T Consensus       178 ~~-~g~--~~~~~~~~~~d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  253 (361)
T cd06452         178 YT-VGR--MPVSGKELGADFIVGSGHKSMAAS-APIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASF  253 (361)
T ss_pred             cc-cCC--cCCCHHHcCCCEEEecCCccccCC-CCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHH
Confidence            95 221  123333445555566699999977 7899999999888877543211      101  11112233444455


Q ss_pred             HHHhh-ccHHHHHHHHHHHHHHHhhccc-ccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCcee
Q psy6547         155 DVILE-ENMIENAYKMGEIFRSELSSPA-NKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~  226 (266)
                      +.... -+...+..++.+++++.|.+ + +...+.. ..+..+   ++.+....-      ......++.++|+++||.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~~L~~-l~g~~v~~~-~~~~~n---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~  328 (361)
T cd06452         254 PHVKERVKRWDEEVEKARWFVAELEK-IEGIKQLGE-KPKNHD---LMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG  328 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEECC-CCCCCc---eEEEEcCCcchhhhhccccchhHHHHHHHcCceE
Confidence            43321 12223333445778888887 5 2222211 112233   766665420      0122347999999999997


Q ss_pred             cc-CCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         227 KP-ISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       227 ~~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .. +..+++|++.. ..++++++.+++.|+++.
T Consensus       329 ~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         329 IKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             EcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence            54 33467899853 369999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.75  E-value=4.4e-16  Score=131.91  Aligned_cols=226  Identities=19%  Similarity=0.208  Sum_probs=163.4

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +-+|.+++-+     |+++|+++|  .+++.+|.+..++|..|++.    ++++|.++|+++|+++++|.++. +   |.
T Consensus       115 g~~Vtyl~V~~~G~v~~e~L~~al--~~~T~LVSim~aNnE~G~IQ----pI~ei~~i~k~~~i~fHvDAvQa-~---Gk  184 (386)
T COG1104         115 GFEVTYLPVDSNGLVDLEQLEEAL--RPDTILVSIMHANNETGTIQ----PIAEIGEICKERGILFHVDAVQA-V---GK  184 (386)
T ss_pred             CCeEEEeCCCCCCeEcHHHHHHhc--CCCceEEEEEecccCeeecc----cHHHHHHHHHHcCCeEEEehhhh-c---Cc
Confidence            5566777655     799999999  56799999999999999998    99999999999999999999994 4   33


Q ss_pred             ccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547          92 LLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--E  160 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~  160 (266)
                      . +++......|+.+||  |..|+  =.+|++..++...  +.+..+       ...-+.|..+.++...|++....  +
T Consensus       185 i-pi~~~~~~vD~ls~SaHK~~Gp--kGiGaLyv~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~  259 (386)
T COG1104         185 I-PIDLEELGVDLLSFSAHKFGGP--KGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELE  259 (386)
T ss_pred             e-eccccccCcceEEeehhhccCC--CceEEEEECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            2 333334458888877  65553  3478887755432  222211       12224466666666666766543  4


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCC-cccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKA-SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------  229 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------  229 (266)
                      ....++..+++++.+.|.+..+...+ ........+   .+.|.++.   ...+.+...|..+||.+..+          
T Consensus       260 ~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~---~~~~~f~g---v~gE~ll~~L~~~gI~vStGSACsS~~~~p  333 (386)
T COG1104         260 EENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPN---ILNFSFPG---VEGESLLLALDLAGIAVSTGSACSSGSLEP  333 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCC---eEEEEeCC---CcHHHHHHhccccCeEEeccccccCCCCCc
Confidence            57788899999999999973333111 111233445   66677765   56788888888999999754          


Q ss_pred             -------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 -------------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 -------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                                   ..+.+|||++..+|++|++++++.+.++++++..
T Consensus       334 ShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         334 SHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             cHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence                         1278999999999999999999999999988654

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.73  E-value=1.5e-16  Score=138.69  Aligned_cols=214  Identities=20%  Similarity=0.250  Sum_probs=155.0

Q ss_pred             CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+|+.++.     .|++++++.+  +++++++.+..+.+.+|...    ++++|.++|+++|+++++|-+++ ++.  .
T Consensus       113 g~~v~~i~~~~~~~~~~~~~~~~l--~~~~~lv~~~~~~~~tG~~~----pi~~I~~~~~~~~~~~~vD~~~~-~g~--~  183 (371)
T PF00266_consen  113 GAEVRVIPADPGGSLDLEDLEEAL--NPDTRLVSISHVENSTGVRN----PIEEIAKLAHEYGALLVVDAAQS-AGC--V  183 (371)
T ss_dssp             TEEEEEEEEGTTSSCSHHHHHHHH--HTTESEEEEESBETTTTBBS----SHHHHHHHHHHTTSEEEEE-TTT-TTT--S
T ss_pred             hhhhccccccccchhhhhhhhhhh--ccccceEEeecccccccEEe----eeceehhhhhccCCceeEechhc-ccc--c
Confidence            455655553     2789999999  36899999999999999987    89999999999999999999994 322  2


Q ss_pred             ccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCC---------------------CCCcHHHHH
Q psy6547          92 LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGST---------------------YGGNPLACK  148 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  148 (266)
                      ...+..+  .+|+++  ..| ++|+ ..+|++..+++..+.+++......                     -+.+.....
T Consensus       184 ~id~~~~--~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~  259 (371)
T PF00266_consen  184 PIDLDEL--GADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIY  259 (371)
T ss_dssp             S--TTTT--TESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHH
T ss_pred             ccccccc--ccceeeecccc-cCCC-Cchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhh
Confidence            2334444  456555  559 8876 678999999988887754321111                     145666677


Q ss_pred             HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCC-c-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKA-S-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      +...+++.++.   +.+.++..++.+++++.|.+ ++...+ . ......+.   ++.+.++.   .+..++.+.|.++|
T Consensus       260 ~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~~~  332 (371)
T PF00266_consen  260 ALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPS---IVSFNLPG---SDADDVVKYLEERG  332 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTT---EEEEEETT---SSHHHHHHHHHHHT
T ss_pred             hHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccc---eEEEeecC---CCHHHHHHHHhhcC
Confidence            77788887744   45788889999999999988 654221 1 11233455   78888843   57899999999999


Q ss_pred             ceeccC--C----------CCEEEEeccCCCCHHHHHHH
Q psy6547         224 LVTKPI--S----------NNIIRLSPALNITEQELREG  250 (266)
Q Consensus       224 i~~~~~--~----------~~~iR~~~~~~~t~~~i~~~  250 (266)
                      |.++.+  .          .+.+|+|++..+|++|+|++
T Consensus       333 I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  333 IAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             EEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            999874  2          28999999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>KOG1357|consensus

Probab=99.72  E-value=1.2e-16  Score=135.17  Aligned_cols=231  Identities=20%  Similarity=0.239  Sum_probs=167.7

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhc---------C-C-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKS---------N-P-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~---------~-~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      .....+..++.+.|||.++||++|++         + + +.-.|+++.++++.|.++    .+.++.+++++|..+++.|
T Consensus       237 GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv----~Lp~vvalkkkykayl~lD  312 (519)
T KOG1357|consen  237 GARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV----DLPEVVALKKKYKAYLYLD  312 (519)
T ss_pred             cccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec----ccHHHHHhhccccEEEEee
Confidence            34677889999999999999999975         2 1 445677888999999998    9999999999999999999


Q ss_pred             ccccC--cCCcCcccccccCCCCc---C--eeeecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHH
Q psy6547          81 EVQTG--LGRTGKLLAIHYEDVRP---D--IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAM  151 (266)
Q Consensus        81 e~~~~--~~~~g~~~~~~~~~~~~---d--~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~  151 (266)
                      |+|+.  .|.+|.. ....++.++   |  +.+|.|.++++   .|++.+++++.+.++.......+  ..+|+.+....
T Consensus       313 EAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~  388 (519)
T KOG1357|consen  313 EAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQIL  388 (519)
T ss_pred             ccccccccCCCCcc-eeeccCCCchhheeecceehhhcccc---cceecCcHHHHhhhccCCCceeecccCChHHHHHHH
Confidence            99943  4455542 334445433   3  34488999855   67899999999998865444333  34566666667


Q ss_pred             HHHHHHhh-------ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         152 TALDVILE-------ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       152 ~~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      .+++.+.-       ++..+++.++..+++..+++ ++......      .++|++.+.+-.  ......+.++|+++++
T Consensus       389 ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~-~gfivyG~------~dSpVvplll~~--~~k~~~f~r~~l~~ni  459 (519)
T KOG1357|consen  389 TSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQK-MGFIVYGN------NDSPVVPLLLYG--PAKIVAFSREMLERNI  459 (519)
T ss_pred             HHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhc-CcEEEecC------CCCCcceeeecC--cccccHHHHHHHhcCc
Confidence            77777643       23677788899999999888 55322222      244555555433  2245678889998877


Q ss_pred             eeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPI-------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       225 ~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+...       -....|+|.+..++.|+++++++.+.+.=+
T Consensus       460 gvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~  501 (519)
T KOG1357|consen  460 GVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD  501 (519)
T ss_pred             eEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence            65422       246789999999999999999999987643

>KOG0633|consensus

Probab=99.72  E-value=3.1e-16  Score=124.12  Aligned_cols=225  Identities=15%  Similarity=0.147  Sum_probs=155.4

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      ..+|+-+|.+     +.+++.+.++.+..++.++++++.|++|.. +..+++++|.+.-.  +.++|+||+|.+|...+.
T Consensus       132 d~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~-ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S  208 (375)
T KOG0633|consen  132 DAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSI-IKEDDILKILEMPD--NGLVVVDEAYIDFSGVES  208 (375)
T ss_pred             CceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCccc-ccHHHHHHHHhCCC--CcEEEEeeeeEeeccccc
Confidence            4566666644     789999999777789999999999999988 78888888887764  799999999987743222


Q ss_pred             ccccccCCCCcCeee---eccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH--Hh-hccHHH
Q psy6547          92 LLAIHYEDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--IL-EENMIE  164 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~---~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~-~~~~~~  164 (266)
                        ....-.--|++++   +||.+| +| +|+|+-..+.++.+.+..  .-..|..|..+..+++++++.  +. .+..+.
T Consensus       209 --~~~lV~kYpNLivlqTlSKsfGLAG-iRvG~~~~~~~ia~iln~--~KaPYNiS~~~s~~AL~Als~~n~kkme~~rd  283 (375)
T KOG0633|consen  209 --RMKLVKKYPNLIVLQTLSKSFGLAG-IRVGYGAFPLSIAEILNR--AKAPYNISVAGSVAALAALSDSNGKKMEDVRD  283 (375)
T ss_pred             --cchHhHhCCceeehhhhhhhcCcce-eEeecccccHHHHHHHHh--ccCCccccchhHHHHHHhcCcccchHHHHHHH
Confidence              1111112355554   999999 99 999999999998887764  334555556666667766652  11 145666


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC-----CCCEEEEec
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI-----SNNIIRLSP  238 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~-----~~~~iR~~~  238 (266)
                      -+.+.+.++...|.+ +..  +.. . ..|.+++|+.+++...+..-++.+..++ .+.|++++..     ..+++|++ 
T Consensus       284 aiv~er~RL~keLt~-v~~--~~~-~-~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit-  357 (375)
T KOG0633|consen  284 AIVRERERLFKELTE-VPF--LND-Y-PGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT-  357 (375)
T ss_pred             HHHHHHHHHHHHhhc-Ccc--ccC-C-CCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE-
Confidence            666667777777776 432  111 1 2244455888888753322344455554 5889999853     45899999 


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINT  257 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~  257 (266)
                        ..|+|+-+-+++.|+.+
T Consensus       358 --vGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  358 --VGTPEENTVLMKCLKQF  374 (375)
T ss_pred             --cCCcccchHHHHHHHhh
Confidence              45777888888888765

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.72  E-value=3.4e-16  Score=137.78  Aligned_cols=217  Identities=16%  Similarity=0.131  Sum_probs=140.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCc-ccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~-~~~~~~~~~~~d~  104 (266)
                      |++++++.+.+. +++++++++..+  |...    ++++|.++|+++|+++|+|++| .|+...|. .....  +.+.-+
T Consensus       149 d~~~l~~~i~~~-~~~~v~~~~~~~--~~~~----~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~  219 (402)
T cd00378         149 DYDALEKMALEF-KPKLIVAGASAY--PRPI----DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVT  219 (402)
T ss_pred             CHHHHHHHHHhC-CCCEEEecCccc--CCCc----CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEE
Confidence            799999998533 567777655432  3333    7999999999999999999997 44422232 11122  333333


Q ss_pred             eeecccccCCchhhhhheecH-HhhhccCCCCCCCCCCC-cHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhc
Q psy6547         105 VILGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGG-NPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~  179 (266)
                      .++||++ +| +++|++++++ ++.+.+........++. ......++..++.....   ++..++++++++++.+.|.+
T Consensus       220 ~s~sK~l-~G-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  297 (402)
T cd00378         220 TTTHKTL-RG-PRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE  297 (402)
T ss_pred             eccccCC-CC-CCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4589999 66 7899998876 77776653322222222 22233333334443322   45677888899999999887


Q ss_pred             ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------CCCEEEEeccC----CCCHH
Q psy6547         180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NITEQ  245 (266)
Q Consensus       180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~iR~~~~~----~~t~~  245 (266)
                       .+...+..  ...+.   ++|+.++.. +.+...+.+.|.++||.+.+.          ..+++|++++.    .++++
T Consensus       298 -~g~~~~~~--~~~~~---~v~v~~~~~-~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~  370 (402)
T cd00378         298 -RGFKVVSG--GTDNH---LVLVDLRPK-GITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEE  370 (402)
T ss_pred             -CCCeEeec--CCCCe---EEEEeCCcc-CCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHH
Confidence             44322211  12345   888888642 234567778888999999631          34689999865    35799


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         246 ELREGLDIIINTINTM  261 (266)
Q Consensus       246 ~i~~~~~~l~~~~~~~  261 (266)
                      |++++++.|.+++++-
T Consensus       371 di~~~~~~l~~~~~~~  386 (402)
T cd00378         371 EMEEIADFIARALKDA  386 (402)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.72  E-value=1.6e-15  Score=133.76  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=138.8

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEc-cccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc-CCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY-EDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~-~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~-~~~~~d  103 (266)
                      .|++++++.+++. ++++|+++ +++   |...    ++++|.++|++||+++++|++|+ +|..+.+..... .+.+.-
T Consensus       155 ~d~~~le~~l~~~-~~klVi~~~~~~---g~~~----dl~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~~~Di~  225 (416)
T PRK13034        155 IDYDEVEELAKEH-KPKLIIAGFSAY---PREL----DFARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFPHAHVV  225 (416)
T ss_pred             cCHHHHHHHHhhc-CCeEEEECCCcc---cccc----CHHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCCCceEE
Confidence            6899999998543 46888874 333   3443    88999999999999999999993 333322211111 122333


Q ss_pred             eeeecccccCCchhhhhheecHH-hhhccCCCCCCCCC--CCcHHHHHH-HHHHHHHHhh--ccHHHHHHHHHHHHHHHh
Q psy6547         104 IVILGKALSGGLYPISAVLADDE-VMGTLVPGTHGSTY--GGNPLACKL-AMTALDVILE--ENMIENAYKMGEIFRSEL  177 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~a-~~~~l~~~~~--~~~~~~~~~~~~~l~~~l  177 (266)
                      +.+++|+++|+ . .|+++++.+ +.+.++.. .+.++  +..+...++ +.+.++.++.  .++.+++.++.++++++|
T Consensus       226 ~~s~~K~l~g~-~-GG~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L  302 (416)
T PRK13034        226 TTTTHKTLRGP-R-GGMILTNDEEIAKKINSA-VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVL  302 (416)
T ss_pred             EEeCcccCCCC-C-CeEEEECcHHHHHHHHhh-cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence            34478999755 2 566666554 33434332 22111  122223333 3344444322  346899999999999999


Q ss_pred             hcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----------CCCCEEEEeccC----CCC
Q psy6547         178 SSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPAL----NIT  243 (266)
Q Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~iR~~~~~----~~t  243 (266)
                      ++ ++.....    + +.++|++.+.+.+. +.+...+.++|.++||.+.+          .....+|++++.    .++
T Consensus       303 ~~-~G~~~~~----~-~~~t~i~~v~~~~~-~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~  375 (416)
T PRK13034        303 KE-RGYDLVS----G-GTDNHLLLVDLRPK-GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFG  375 (416)
T ss_pred             HH-cCCEecc----C-CCCCcEEEEEcCCC-CCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCC
Confidence            87 5432221    1 22456888887652 23567777889999999874          234679999887    888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTINT  260 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~  260 (266)
                      ++|++++++.|.+.+.+
T Consensus       376 ~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        376 EAEFREIANWILDVLDD  392 (416)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999988774

>KOG1368|consensus

Probab=99.72  E-value=1.1e-16  Score=128.73  Aligned_cols=221  Identities=14%  Similarity=0.179  Sum_probs=161.2

Q ss_pred             CHHHHHHHHhc------CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC
Q psy6547          27 DVDALEAKLKS------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV  100 (266)
Q Consensus        27 d~~~l~~~l~~------~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~  100 (266)
                      |++++|+.+.-      .+.+++|.+|..+++.|..++|.+++.++.++|++||+.+.+|.+...-.-....-+.+.+.-
T Consensus       135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~  214 (384)
T KOG1368|consen  135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICS  214 (384)
T ss_pred             eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHH
Confidence            69999999963      236899999999988887779999999999999999999999977621100111112222222


Q ss_pred             CcC--eeeecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy6547         101 RPD--IVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  176 (266)
Q Consensus       101 ~~d--~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  176 (266)
                      ..|  -+++||++++++  .+.++++++++++.+..  ..++.+..+.+.+++++.+|+.-.  ..+++-.+++..+.+.
T Consensus       215 ~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~--~~L~~dHk~A~~lAe~  290 (384)
T KOG1368|consen  215 AFDSVSICLSKGLGAPV--GSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENV--PLLRADHKRAKELAEY  290 (384)
T ss_pred             hhhhhhhhhhccCCCCc--ccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHH
Confidence            333  345999999652  34567898888776532  456667778888899988886422  2566666777777777


Q ss_pred             hhcccccCCCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         177 LSSPANKSKASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       177 l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      +.. .+.  ++.++. ...+   |+.+.+..+ ..+++++++.+.++||.+.++....+|+.++...|+++++.....++
T Consensus       291 ~~~-~~~--i~v~v~a~etN---iv~~~l~q~-~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~  363 (384)
T KOG1368|consen  291 INT-PEE--IRVEVPAVETN---IVNMVLCQA-RLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLS  363 (384)
T ss_pred             hcc-ccc--eeeecchhhcc---eeeeecccc-cCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHH
Confidence            775 432  222122 2344   888887653 56899999999999999999888899999999999999999999996


Q ss_pred             HHH
Q psy6547         256 NTI  258 (266)
Q Consensus       256 ~~~  258 (266)
                      +.+
T Consensus       364 k~~  366 (384)
T KOG1368|consen  364 KKF  366 (384)
T ss_pred             HHH
Confidence            543

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.71  E-value=1.1e-15  Score=135.94  Aligned_cols=226  Identities=14%  Similarity=0.108  Sum_probs=147.1

Q ss_pred             CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCc---Cc-cccc
Q psy6547          26 NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRT---GK-LLAI   95 (266)
Q Consensus        26 ~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~---g~-~~~~   95 (266)
                      .|+++|++.+.+.  +++++|+++.++|++|..+++.+.+++|+++|++||++||+|+++..    |...   |. ....
T Consensus       161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si  240 (460)
T PRK13238        161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSI  240 (460)
T ss_pred             cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCH
Confidence            4799999999543  36999999999888876668999999999999999999999998731    2110   10 0010


Q ss_pred             cc----CCCCcCeeeec--ccccCCchhhhhheec-HHhhhccCCCC----CCCCCCCcHHH-HHHHHHHHHHHhhccHH
Q psy6547          96 HY----EDVRPDIVILG--KALSGGLYPISAVLAD-DEVMGTLVPGT----HGSTYGGNPLA-CKLAMTALDVILEENMI  163 (266)
Q Consensus        96 ~~----~~~~~d~~~~s--K~~~~g~~~~g~~~~~-~~~~~~~~~~~----~~~~~~~~~~~-~~a~~~~l~~~~~~~~~  163 (266)
                      ..    .+-..|..++|  |...++ . .|+++.+ +++.+.++...    ...++++.+.. +.|+..+|+....+++.
T Consensus       241 ~~i~~~~~s~~D~~~~Sg~K~g~~~-~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~  318 (460)
T PRK13238        241 KEIAREMFSYADGLTMSAKKDAMVN-I-GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYL  318 (460)
T ss_pred             HHHhhhhcccCcEEEEecccCCCCc-c-eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHH
Confidence            00    01124454444  322222 1 3455555 57777776542    23467665555 56666667654455666


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHH-HCCceeccCC------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMK-DAGLVTKPIS------  230 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~gi~~~~~~------  230 (266)
                      +...++++++.+.|++ .+.+.+   .+..|.   ++.+++..-.      +....+++.+|. +.||.+.|.+      
T Consensus       319 ~~~~~~~~~l~~~L~~-~G~~~~---~p~Gg~---~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~  391 (460)
T PRK13238        319 AYRIGQVEYLGEGLEE-AGVPIQ---TPAGGH---AVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGR  391 (460)
T ss_pred             HHHHHHHHHHHHHHHH-CCCCeE---ccCCce---EEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceeccc
Confidence            6666678899999987 543322   234456   6666664310      123577888876 6699887642      


Q ss_pred             -----------CCEEEEeccC-CCCHHHHHHHHHHHHHHHHH
Q psy6547         231 -----------NNIIRLSPAL-NITEQELREGLDIIINTINT  260 (266)
Q Consensus       231 -----------~~~iR~~~~~-~~t~~~i~~~~~~l~~~~~~  260 (266)
                                 .+.+|++.+- ..|.++++.+.++|.+..++
T Consensus       392 ~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        392 DPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             CCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence                       3789999763 44899999999999987654

>PLN02368 alanine transaminase

Probab=99.70  E-value=6.8e-17  Score=141.69  Aligned_cols=172  Identities=11%  Similarity=0.062  Sum_probs=121.2

Q ss_pred             CCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY   73 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~   73 (266)
                      .+|.+...+...+.+++.++.       .|+++|++.++..    .++++++++.++|++|.+ ++.+.+++|.++|++|
T Consensus       164 ~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v-~s~e~l~~l~~~a~~~  242 (407)
T PLN02368        164 QYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILKFCYQE  242 (407)
T ss_pred             CCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCcc-CCHHHHHHHHHHHHHc
Confidence            344444445556777777753       3689999988531    257877766668889977 8999999999999999


Q ss_pred             CCEEEEeccccCcCCcCc-cc-ccc----c-------CCCCcCeeeecccc-c-CCchhhhhhe---ecHHhhhccCCCC
Q psy6547          74 NVLFIADEVQTGLGRTGK-LL-AIH----Y-------EDVRPDIVILGKAL-S-GGLYPISAVL---ADDEVMGTLVPGT  135 (266)
Q Consensus        74 g~~li~De~~~~~~~~g~-~~-~~~----~-------~~~~~d~~~~sK~~-~-~g~~~~g~~~---~~~~~~~~~~~~~  135 (266)
                      |++||+||+|..+...+. .+ +..    .       .+....+.+|||++ + +| ||+||++   +++++++.+....
T Consensus       243 ~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~  321 (407)
T PLN02368        243 RLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVA  321 (407)
T ss_pred             CCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHHHHHHHHHHh
Confidence            999999999987643332 11 111    0       11223334499998 5 89 9999998   4778887776542


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHH-----------hh-ccHHHHHHHHHHHHHHHhhc
Q psy6547         136 HGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~-----------~~-~~~~~~~~~~~~~l~~~l~~  179 (266)
                       ..+++.+.+++.++.++++.-           +. .++.+.++++++.+.+.|.+
T Consensus       322 -~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~  376 (407)
T PLN02368        322 -SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS  376 (407)
T ss_pred             -cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             345677888999888888521           11 23567778888888899888

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.70  E-value=2e-15  Score=121.74  Aligned_cols=223  Identities=14%  Similarity=0.140  Sum_probs=150.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCe--
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI--  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~--  104 (266)
                      |.++|+  +  .+++.+|.+.-+.|++|.+ ++.+.+.+|-++|++||++++.|.+|. .-..+..|.-...--.+++  
T Consensus       170 DF~~l~--i--~e~~g~ic~SRPtNPTGNV-lTdeE~~kldalA~~~giPliIDnAYg-~PFP~iifsd~~~~w~~Niil  243 (417)
T COG3977         170 DFEHLH--I--GESTGAICVSRPTNPTGNV-LTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFSDATPLWNENIIL  243 (417)
T ss_pred             CHHHcc--c--ccccceEEecCCCCCCCCc-ccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecccccccCCCCEEE
Confidence            555544  3  4578999999999999988 899999999999999999999999993 3222332221111112333  


Q ss_pred             -eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----cc-HHHHHHHHHHHHHHHhh
Q psy6547         105 -VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----EN-MIENAYKMGEIFRSELS  178 (266)
Q Consensus       105 -~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~-~~~~~~~~~~~l~~~l~  178 (266)
                       .++||.=-+| .|.|.+++++++++.+.+.....+..++..+.+.+...++.-.-    ++ ++--+++..+.....|+
T Consensus       244 C~SLSK~GLPG-~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~  322 (417)
T COG3977         244 CMSLSKLGLPG-SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILR  322 (417)
T ss_pred             EeehhhcCCCC-cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence             3377754477 89999999999999988766666666666777766655532111    11 11112333334444455


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------------CCCEEEEeccCCCCHH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------------SNNIIRLSPALNITEQ  245 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------~~~~iR~~~~~~~t~~  245 (266)
                      +.+++..... -++.|.   +|.+...++-....+++.++|+++|+++.|+             ..+++|++  +..+++
T Consensus       323 ~~lp~~~~~i-HkpEGA---IFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~  396 (417)
T COG3977         323 RYLPEYRCLI-HKPEGA---IFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPE  396 (417)
T ss_pred             HhcCccceee-ecCCcc---eeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHH
Confidence            4444433333 345565   5554444433457899999999999999886             23789999  888999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy6547         246 ELREGLDIIINTINTMA  262 (266)
Q Consensus       246 ~i~~~~~~l~~~~~~~~  262 (266)
                      .+++.+++|.+.+++.-
T Consensus       397 ~ie~Gva~lae~ve~~y  413 (417)
T COG3977         397 KIEKGVAILAEEVERAY  413 (417)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887753

>PLN02242 methionine gamma-lyase

Probab=99.70  E-value=2.3e-16  Score=138.73  Aligned_cols=224  Identities=11%  Similarity=0.068  Sum_probs=146.2

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .+.++++++..|++++++++  ++ ++++|+++.++|++|.+.    ++++|+++|+++|+++|+||+|+.+. .+    
T Consensus       140 ~G~~~~~~d~~d~e~l~~~i--~~~~tklV~lesp~NPtG~v~----dl~~I~~la~~~gi~livDea~~~~~-~~----  208 (418)
T PLN02242        140 CNITTTFVDITDLEAVKKAV--VPGKTKVLYFESISNPTLTVA----DIPELARIAHEKGVTVVVDNTFAPMV-LS----  208 (418)
T ss_pred             cCceEEEcCCCCHHHHHHhc--CcCCCEEEEEecCCCCCCccc----CHHHHHHHHHHhCCEEEEECCCCccC-CC----
Confidence            56777888888999999999  44 489999999999999886    89999999999999999999996442 11    


Q ss_pred             cccCCCCcCeeeeccccc-CCchh-hhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALS-GGLYP-ISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKM  169 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~-~g~~~-~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~  169 (266)
                      ...++.+..+.++||.++ +| ++ .||+++++++++.+......  ..++.....+.++..++. +.. +...++..++
T Consensus       209 ~~~~g~divv~S~SK~l~g~g-~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~~~~  286 (418)
T PLN02242        209 PARLGADVVVHSISKFISGGA-DIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-LPHLSLRMKEHCRR  286 (418)
T ss_pred             HHHcCCcEEEEeCccccCCCC-CceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence            112355555666999998 45 56 58899998888777644332  122223323333333322 111 2345677788


Q ss_pred             HHHHHHHhhccccc----CCCccc---------E---EecCccceeeEEEEeeCccchHHHHHHHHHHC----CceeccC
Q psy6547         170 GEIFRSELSSPANK----SKASFK---------L---SSGGLKKSINTLILSVSAILEVYDVCIKMKDA----GLVTKPI  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~~----~~~~~~---------~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~----gi~~~~~  229 (266)
                      ++++.+.|++ .+.    +.+...         .   .+.|.   +++|++..  ...+..|++.|.--    .+.+..+
T Consensus       287 a~~la~~L~~-~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~---~~sf~l~~--~~~~~~f~~~l~~~~~~~~~~~slG  360 (418)
T PLN02242        287 AMEYAKRMKE-LGLKVIYPGLEDHPQHALLKSMANKGYGFGG---LLCLDMDT--EERANRLMRYLQNSTQFGFMAVSLG  360 (418)
T ss_pred             HHHHHHHHHh-CCCEEECCCCCCCccHHHHHHhcccCCCcee---EEEEEECC--HHHHHHHHHHhhcccccceeeecCC
Confidence            8888888887 442    111110         1   24566   89999964  44577788877611    1111111


Q ss_pred             ---------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ---------------------------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ---------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                                 ..+.+|+|+.+..   +.+.+++.|+++++.+
T Consensus       361 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli~dl~~al~~~  416 (418)
T PLN02242        361 YYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRWSQFEKALSAM  416 (418)
T ss_pred             CCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHHHHHHHHHHHh
Confidence                                       1368999955442   2566778888877765

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.70  E-value=2.9e-15  Score=131.87  Aligned_cols=224  Identities=13%  Similarity=0.150  Sum_probs=147.5

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |++++++.+  .+++++++++.++|++|.+.    ++++|.++|+++|+++++|++++ ++.  
T Consensus       115 ~g~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~v~~~~n~tG~~~----~~~~I~~l~~~~g~~livD~a~a-~g~--  185 (402)
T TIGR02006       115 EGFEVTYLPPKSNGLIDLEELKAAI--RDDTILVSIMHVNNEIGVIQ----DIAAIGEICRERKVFFHVDAAQS-VGK--  185 (402)
T ss_pred             cCCEEEEEccCCCCcCCHHHHHHhc--CCCCEEEEEECCCcCceecc----cHHHHHHHHHHcCCEEEEEcchh-cCC--
Confidence            35667777653     799999998  34678999999999999886    89999999999999999999994 322  


Q ss_pred             cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547          91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                      .+  ++..+..+|++++|  |.+++  ...|+++.+++....+.+...       ....+.+.....+...+++.+..  
T Consensus       186 ~~--~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~  261 (402)
T TIGR02006       186 IP--INVNELKVDLMSISGHKIYGP--KGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEM  261 (402)
T ss_pred             cc--cCccccCCCEEEEehhhhcCC--CceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhH
Confidence            12  22234567788877  97763  348888877654444333211       12234555566666677776654  


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---------  229 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------  229 (266)
                      +...++.+++++++++.|++ +... ...........   .+.+.+..   .+.+++...|  +++.++.+         
T Consensus       262 ~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~---~~~v~f~~---~~~~~~~~~l--~~i~v~~G~~c~~~~~~  332 (402)
T TIGR02006       262 AQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPG---NLNVSFNY---VEGESLIMAL--KDLAVSSGSACTSASLE  332 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCC---eEEEEEeC---cCHHHHHHhc--CCEEEechhhcCCCCCC
Confidence            34667888888888888877 4321 11110001111   22333332   2345565555  35554321         


Q ss_pred             --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 --------------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                    ..+.+|+|++..+|++|+|++++.|+++++.+
T Consensus       333 ~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       333 PSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             ccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                          13789999999999999999999999988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.70  E-value=8e-16  Score=132.63  Aligned_cols=210  Identities=17%  Similarity=0.088  Sum_probs=136.8

Q ss_pred             CCCceeec-----CCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          17 MPGYNIIP-----YNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        17 ~~~v~~~~-----~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +.+++.++     ..|+++|++.+++    ..++++++++..++++|.+.    ++++|.++|+++|+++++|++|+++.
T Consensus       116 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~l~vD~a~~~~~  191 (345)
T cd06450         116 DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID----PLEEIADLAEKYDLWLHVDAAYGGFL  191 (345)
T ss_pred             hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC----CHHHHHHHHHHhCCeEEEechhhHHH
Confidence            56677776     2479999999954    11567777777777788874    89999999999999999999996542


Q ss_pred             CcCcccccccCCC-CcCe--eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547          88 RTGKLLAIHYEDV-RPDI--VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus        88 ~~g~~~~~~~~~~-~~d~--~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      ...........+. ..|.  .+++|+++++ .+.|+++.+                   .+.+.++...+....-++..+
T Consensus       192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~  251 (345)
T cd06450         192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGCSAVLVR-------------------ALKLWATLRRFGRDGYGEHID  251 (345)
T ss_pred             hhChhhHHHhcCccccCEEEEchhHhhCCC-cchHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHH
Confidence            1111000000111 2443  3588998877 788887655                   233333333332222245677


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--ccchHHHHHHHHHHCCceeccC----CCCEEEEec
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AILEVYDVCIKMKDAGLVTKPI----SNNIIRLSP  238 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~  238 (266)
                      +..++++++.+.|++ ++...+.  ....+.   ++.|.++..  .+.+..++.++|.++|+.+.+.    ...++|+++
T Consensus       252 ~~~~~~~~l~~~L~~-~~~~~~~--~~~~~~---iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~  325 (345)
T cd06450         252 RIVDLAKYLAELIRA-DPGFELL--GEPNLS---LVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVV  325 (345)
T ss_pred             HHHHHHHHHHHHHhc-CCCeEEe--cCCcee---EEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEe
Confidence            788888888888887 4321110  011233   777776541  0245678999999996554432    357899999


Q ss_pred             cCCC-CHHHHHHHHHHHHH
Q psy6547         239 ALNI-TEQELREGLDIIIN  256 (266)
Q Consensus       239 ~~~~-t~~~i~~~~~~l~~  256 (266)
                      +..+ |++|++++++.|.+
T Consensus       326 ~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         326 TNPLTTRDDADALLEDIER  344 (345)
T ss_pred             cCCCCCHHHHHHHHHHHHh
Confidence            8764 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN02651 cysteine desulfurase

Probab=99.68  E-value=1.8e-15  Score=131.54  Aligned_cols=212  Identities=17%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |++++++++  .++++++++..+++++|.+.    ++++|.++|+++|+++++|.+|+ ++.  
T Consensus       111 ~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~v~~~~n~tG~~~----~l~~I~~~~~~~g~~~~vD~a~~-~g~--  181 (364)
T PLN02651        111 EGFEVTYLPVKSDGLVDLDELAAAI--RPDTALVSVMAVNNEIGVIQ----PVEEIGELCREKKVLFHTDAAQA-VGK--  181 (364)
T ss_pred             cCCEEEEEccCCCCcCCHHHHHHhc--CCCcEEEEEECCCCCceecc----cHHHHHHHHHHcCCEEEEEcchh-hCC--
Confidence            35567677643     789999999  44689999999999999887    89999999999999999999995 211  


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                      ..+..+.++  +|+++  ..|+ +|+ ...|++..+++..+.+.+...       ....+.+..+..++.++|+.+..  
T Consensus       182 ~~~~~~~~~--~D~~~~s~hK~-~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~  257 (364)
T PLN02651        182 IPVDVDDLG--VDLMSISGHKI-YGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEM  257 (364)
T ss_pred             cccCcccCC--CCEEEechhhh-CCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhH
Confidence            223344444  46555  5696 444 458888888876666554321       22335666777888888887764  


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccc-cCCCcc-cE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPAN-KSKASF-KL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------  230 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------  230 (266)
                      +...++.+++.+++++.|++.+. ...+.. .. .....   ++.|.++.   .+++++.++|.+  |.++.+.      
T Consensus       258 ~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~--i~v~~g~~c~~~~  329 (364)
T PLN02651        258 DYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPG---TLNLSFAY---VEGESLLMGLKE--VAVSSGSACTSAS  329 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCC---EEEEEeCC---CCHHHHHHHhCC--EEEEchhhcCCCC
Confidence            44677888888888888875222 111111 01 11233   77777754   467889988865  7765331      


Q ss_pred             -----------------CCEEEEeccCCCCHHHHH
Q psy6547         231 -----------------NNIIRLSPALNITEQELR  248 (266)
Q Consensus       231 -----------------~~~iR~~~~~~~t~~~i~  248 (266)
                                       .+.+|+|++..+|++|+|
T Consensus       330 ~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        330 LEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             CCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence                             368999999999999975

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.68  E-value=6.5e-15  Score=132.07  Aligned_cols=238  Identities=16%  Similarity=0.105  Sum_probs=153.4

Q ss_pred             cCcccccCCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           7 PTSYNEFGPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      |.........+.+++.++.     .|+++|++++  ++++++++++.++ ++|.+   ..++++|.++|+++|+++++|.
T Consensus       172 p~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i--~~~t~~V~v~~Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~  245 (481)
T PRK04366        172 GTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAV--GEDTAALMLTNPN-TLGLF---ERNILEIAEIVHEAGGLLYYDG  245 (481)
T ss_pred             HhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhc--ccCCeEEEEeCCC-Ccccc---chHHHHHHHHHHHcCCEEEEEe
Confidence            3333334456677777765     3789999998  4467887776544 56743   3479999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeee--eccccc-----CCchhhhhheecHHhhhccCCCC-------------------
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS-----GGLYPISAVLADDEVMGTLVPGT-------------------  135 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~-------------------  135 (266)
                      ++. .+..|.. ....+|  .|+++  ..|+|+     || ..+|++.+++++.+.+....                   
T Consensus       246 a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Gg-p~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~  320 (481)
T PRK04366        246 ANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGG-PGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIG  320 (481)
T ss_pred             cCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCCC-CCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCC
Confidence            983 2112221 222334  56655  569887     33 34677778877776653210                   


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe--eCccc
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS--VSAIL  210 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~  210 (266)
                      ....++.+.+.+.++...+..+..+++   .++..++.++++++|++ +....+.    + .. .+-+.+...  ...+.
T Consensus       321 r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~~~~----~-~~-~~~~~~~~~~~~~~g~  393 (481)
T PRK04366        321 RVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDLPYD----R-PC-MHEFVLSGKKLKETGV  393 (481)
T ss_pred             CcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcccCC----C-Ce-eEEEEEECccccccCC
Confidence            011223344555666666676666654   45567789999999988 4211111    0 11 012333321  11134


Q ss_pred             hHHHHHHHHHHCCceecc----C-CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         211 EVYDVCIKMKDAGLVTKP----I-SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       211 ~~~~~~~~l~~~gi~~~~----~-~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +..++.++|.++||.+..    . ..+.+|++++..+|++|||++++.|+++.++..
T Consensus       394 ~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~  450 (481)
T PRK04366        394 RTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK  450 (481)
T ss_pred             CHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            688999999999998762    1 256899999999999999999999999887653

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.68  E-value=1.1e-14  Score=129.97  Aligned_cols=215  Identities=18%  Similarity=0.216  Sum_probs=140.3

Q ss_pred             CCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE--eccccCcCCc
Q psy6547          16 HMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~--De~~~~~~~~   89 (266)
                      .+.+++.++.+    |+++|++++  .+++++++++++ +++|.+.    ++++|.++|+++|+++++  |.+..+.   
T Consensus       178 ~G~~~~~v~~~~~~~d~~~l~~~i--~~~t~~v~l~~p-n~tG~v~----~l~~I~~~a~~~~~~~iv~~d~~~~g~---  247 (447)
T PRK00451        178 QGIEVVEVPYEDGVTDLEALEAAV--DDDTAAVVVQYP-NFFGVIE----DLEEIAEIAHAGGALFIVGVDPVSLGL---  247 (447)
T ss_pred             CCcEEEEecCCCCCCCHHHHHHhc--CCCeEEEEEECC-CCCCeeC----CHHHHHHHHHHCCCEEEEEcChHHhcc---
Confidence            46778888765    789999999  457888888776 6788875    899999999999999998  5443211   


Q ss_pred             CcccccccCCCCcCeee-----eccccc-CCchhhhhheecHHhhhccCCC---------------------------CC
Q psy6547          90 GKLLAIHYEDVRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPG---------------------------TH  136 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~---------------------------~~  136 (266)
                        ......+  ..|+++     +||.+. +| +++|++.+++++.+.+.+.                           .+
T Consensus       248 --~~~~~~~--~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (447)
T PRK00451        248 --LKPPGEY--GADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREK  322 (447)
T ss_pred             --CCCcccC--CCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccc
Confidence              1111223  345554     566655 67 7899999988887764211                           01


Q ss_pred             CC-CCCCcHHHH-HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeE---EEEeeCc
Q psy6547         137 GS-TYGGNPLAC-KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINT---LILSVSA  208 (266)
Q Consensus       137 ~~-~~~~~~~~~-~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~  208 (266)
                      .. +...+...+ .++..+++.+..   ++..+++.+++++++++|++ ++.  +.  +. .+.   ++.   +.++   
T Consensus       323 ~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g--~~--~~-~~~---~~~~~~v~~~---  390 (447)
T PRK00451        323 ATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAE-IGG--VE--LF-DGP---FFNEFVVRLP---  390 (447)
T ss_pred             ccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCC--EE--ec-CCC---eEEEEEEecC---
Confidence            11 111111111 233334443333   45678888899999999887 432  11  11 122   332   3332   


Q ss_pred             cchHHHHHHHHHHCCceec----cC---CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~----~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                       .+..+++++|.++|+.+.    +.   ..+++|++++..+|+++++++++.|++++
T Consensus       391 -~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        391 -KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             -CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence             256889999999988743    11   23689999998899999999999998764

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.67  E-value=6e-16  Score=134.58  Aligned_cols=224  Identities=15%  Similarity=0.100  Sum_probs=145.6

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++.++  +++++|++++++|++|.+.    ++++|.++|+++|+++|+|++|... ..... 
T Consensus       101 ~~~g~~~~~v~~~d~~~l~~~i~--~~~~~v~~e~~~np~g~~~----dl~~i~~la~~~g~~livD~t~~~~-~~~~~-  172 (369)
T cd00614         101 PKLGIEVTFVDPDDPEALEAAIK--PETKLVYVESPTNPTLKVV----DIEAIAELAHEHGALLVVDNTFATP-YLQRP-  172 (369)
T ss_pred             hhcCeEEEEeCCCCHHHHHHhcC--CCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCcch-hcCCh-
Confidence            35677899999999999999993  4689999999999999886    7999999999999999999999422 11111 


Q ss_pred             ccccCCCCcCeeeecccccCC-chhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSGG-LYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       . .++.+..+.+++|.++|+ -.++|++++++ ++.+.+...........++..+.++...++.+  +...++..+++.
T Consensus       173 -~-~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~  248 (369)
T cd00614         173 -L-ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENAL  248 (369)
T ss_pred             -h-hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHH
Confidence             1 123333344599999842 15688999876 77776664333334456677666665555422  234566677788


Q ss_pred             HHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec---------
Q psy6547         172 IFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK---------  227 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---------  227 (266)
                      .+.+.|++ .+.      +.++..         ..+.|.   ++.|.+.. +.....+|++.|.--.+.+.         
T Consensus       249 ~la~~L~~-~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~---i~s~~l~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~  323 (369)
T cd00614         249 KVAEFLEK-HPKVERVYYPGLPSHPQHELAKKQMSGYGG---VFSFELKG-GLEAAKKFLNALKLFSLAVSLGGVESLVE  323 (369)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCchHHHHHHhcCCCce---EEEEEeCC-CHHHHHHHHHcCCcceEcccCCCCceeee
Confidence            88888876 441      111110         123466   99999963 13345566665542211110         


Q ss_pred             -cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         228 -PI-----------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       228 -~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                       |.                 ..+.+|+|..+    |+.+.+++.|++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         324 HPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             CCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence             10                 14689999665    56677777777765

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>KOG0256|consensus

Probab=99.66  E-value=8.5e-15  Score=122.69  Aligned_cols=221  Identities=16%  Similarity=0.202  Sum_probs=147.6

Q ss_pred             CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccccc---c
Q psy6547          27 DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIH---Y   97 (266)
Q Consensus        27 d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~~~---~   97 (266)
                      +.++||+++.+    .-+++++++..++|+-|++ ++++.+..+...+.++++.+|+||+|++  |+.. .+-++.   .
T Consensus       209 tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~-~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~-~F~Sv~ev~~  286 (471)
T KOG0256|consen  209 TVEALEAALNQARKLGLKVKGVLITNPSNPLGTT-LSPEELISLLNFASRKNIHVISDEIYAGSVFDKS-EFRSVLEVRK  286 (471)
T ss_pred             cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCc-cCHHHHHHHHHHHhhcceEEEeehhhcccccCcc-CceEHHHHhh
Confidence            47888887754    3389999998888888987 8999999999999999999999999976  3221 111111   1


Q ss_pred             -CCCCcC----eeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH--Hhh---ccHHHH
Q psy6547          98 -EDVRPD----IVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--ILE---ENMIEN  165 (266)
Q Consensus        98 -~~~~~d----~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~---~~~~~~  165 (266)
                       ...++|    ++++||-|| +| +|+|.+.. ++.+......  ...-...|+..+..+..-|..  +.+   .+-..+
T Consensus       287 ~~~~~~~rvHivyslSKD~GlpG-fRvGviYS~ne~VvsaA~k--mssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~R  363 (471)
T KOG0256|consen  287 DPHLDPDRVHIVYSLSKDFGLPG-FRVGVIYSNNEDVVSAATK--MSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKR  363 (471)
T ss_pred             ccccCCCcEEEEEEeccccCCCc-eEEEEEEecChHHHHHHHH--HhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence             111222    455999999 99 99999876 5556555543  222333455566555544433  111   123455


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cc-hHHHHHHHHHHC-CceeccC------CCCEE
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---IL-EVYDVCIKMKDA-GLVTKPI------SNNII  234 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~-gi~~~~~------~~~~i  234 (266)
                      ++.+.+++.+.|++ +   .++....+.|+   |.|+++..--   .. ...++-+++.++ ++.++|+      .++|+
T Consensus       364 l~~rh~~~~~gLk~-l---gI~cl~s~AGl---F~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWF  436 (471)
T KOG0256|consen  364 LRIRHRYIVEGLKA-L---GIPCLKSNAGL---FCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWF  436 (471)
T ss_pred             HHHHHHHHHhhHHh-c---CCceeecCCee---EEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeE
Confidence            55666666666666 4   35543557899   9999976511   12 233456667766 9999987      46999


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      |+|.. +..++.++-+++||..++..
T Consensus       437 RvcFA-n~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  437 RVCFA-NMSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             EEEec-cCCHHHHHHHHHHHHHHHHh
Confidence            99944 44566666699999998874

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.66  E-value=1.5e-14  Score=125.41  Aligned_cols=225  Identities=14%  Similarity=0.078  Sum_probs=139.1

Q ss_pred             CCCceeec---CCCHHHHHHHHhcCCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          17 MPGYNIIP---YNDVDALEAKLKSNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        17 ~~~v~~~~---~~d~~~l~~~l~~~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +.++++++   ..|++++++++  .+++++++ +++.++++|.+.    ++++|.++|++||+++++|++|. .  ... 
T Consensus       124 g~~~v~v~~~~~~d~~~le~ai--~~~t~ai~~v~~~~~~~g~~~----~~~~i~~~a~~~gi~vivD~a~~-~--~~~-  193 (363)
T TIGR01437       124 GGKVVEAGYANECSAEQLEAAI--TEKTAAILYIKSHHCVQKSML----SVEDAAQVAQEHNLPLIVDAAAE-E--DLQ-  193 (363)
T ss_pred             CCeEEEEcCCCCCCHHHHHHhc--ChhceEEEEEecCCCCcCCcC----CHHHHHHHHHHcCCeEEEECCCC-C--chH-
Confidence            33455554   24899999999  45677666 566666677765    78999999999999999999995 1  011 


Q ss_pred             cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE--ENMIENAYK  168 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~  168 (266)
                       ....++.+.-+.+.+|+++|  ++.|++++++++++.+....+.  ..+.......++..++++.+..  .+..+...+
T Consensus       194 -~~~~~g~D~~~~S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~  270 (363)
T TIGR01437       194 -KYYRLGADLVIYSGAKAIEG--PTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVA  270 (363)
T ss_pred             -HHHHcCCCEEEEeCCcccCC--CceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHH
Confidence             11123433333446698865  4689988888777665322111  1111222345555566666544  234445555


Q ss_pred             HHHHHHHHhhcccccCCCcccEEecCc--cceeeEEEEeeCccchHHHHHHHHHHCC--ceecc--CCCCEEEEeccCCC
Q psy6547         169 MGEIFRSELSSPANKSKASFKLSSGGL--KKSINTLILSVSAILEVYDVCIKMKDAG--LVTKP--ISNNIIRLSPALNI  242 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~--~~~~~iR~~~~~~~  242 (266)
                      +.+.++++|.+ ++.-.+.......+.  +.+.+.|.... .+.+..++++.|.+++  |.+++  ...+.+|+.+.. +
T Consensus       271 ~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~  347 (363)
T TIGR01437       271 KLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESE-LGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-V  347 (363)
T ss_pred             HHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccC-CCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-C
Confidence            67789999888 532111100011111  11122233211 1467899999999877  77774  356789999885 6


Q ss_pred             CHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINT  257 (266)
Q Consensus       243 t~~~i~~~~~~l~~~  257 (266)
                      +++|++.++++|++.
T Consensus       348 ~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       348 TGGQLDIIVERIREI  362 (363)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            799999999999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.66  E-value=1.1e-14  Score=129.74  Aligned_cols=215  Identities=15%  Similarity=0.146  Sum_probs=140.8

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-cccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~~~~~~~d~~  105 (266)
                      |+++|++++++. +++++++.  .+..|...    ++++|.++|+++|+++++|++|+ +|..+.. +.....  ..|++
T Consensus       170 d~~~L~~~l~~~-~~~lvi~~--~s~~g~~~----di~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l  239 (452)
T PTZ00094        170 DYDKLEELAKAF-RPKLIIAG--ASAYPRDI----DYKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVV  239 (452)
T ss_pred             CHHHHHHHHHHh-CCCEEEEe--CCCCCCcc----CHHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEE
Confidence            899999999653 34555552  33466666    89999999999999999999993 3333221 111112  35666


Q ss_pred             e--ecccccCCchhhhhheecHHhhhccCCC---CC--CCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHH
Q psy6547         106 I--LGKALSGGLYPISAVLADDEVMGTLVPG---TH--GSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRS  175 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~  175 (266)
                      +  .+|+|.|+ . .|++++++++.+.+...   ..  ...-++++...++..++++.+..   +++.+++.++.+++.+
T Consensus       240 ~~S~hK~l~GP-~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~  317 (452)
T PTZ00094        240 TTTTHKSLRGP-R-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAA  317 (452)
T ss_pred             EcCCccCCCCC-C-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            6  66999765 4 57777766543322111   01  11114566677788888888754   3578889999999999


Q ss_pred             HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C-----CCCEEEEeccCCCC---
Q psy6547         176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPALNIT---  243 (266)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~iR~~~~~~~t---  243 (266)
                      .|.+ .+.....     .+.+++...+.+... +.+..++...|.++||.+..    .     ..+++|++++..++   
T Consensus       318 ~L~~-~g~~v~~-----~~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~  390 (452)
T PTZ00094        318 ALEK-RGYDLVT-----GGTDNHLVLVDLRPF-GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGA  390 (452)
T ss_pred             HHHh-CCcEEec-----CCCCCceEeecCCcC-CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCC
Confidence            9877 4321111     111122444444321 34677888889888999952    1     24789999976665   


Q ss_pred             -HHHHHHHHHHHHHHHHH
Q psy6547         244 -EQELREGLDIIINTINT  260 (266)
Q Consensus       244 -~~~i~~~~~~l~~~~~~  260 (266)
                       ++|++++++.|.+.+..
T Consensus       391 ~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        391 KEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence             99999999999998875

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.65  E-value=9.9e-15  Score=129.09  Aligned_cols=217  Identities=14%  Similarity=0.165  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCc-ccccccCCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK-LLAIHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~-~~~~~~~~~~~d  103 (266)
                      .|+++++++++++ +++++++...  +.|...    ++++|.++|+++|+++|+|++|. |+...|. .....  +.+.-
T Consensus       152 ~d~~~l~~~i~~~-~~k~v~~~~~--~~~~~~----~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~  222 (416)
T PRK00011        152 IDYDEVEKLALEH-KPKLIIAGAS--AYSRPI----DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVV  222 (416)
T ss_pred             cCHHHHHHHHHhc-CCCEEEECCC--cCCCcc----CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEE
Confidence            3799999999543 5677777532  233333    78999999999999999999983 3211221 11121  23333


Q ss_pred             eeeecccccCCchhhhhheec-HHhhhccCCCCCCCCCC-CcHHHHHHHHHHH-HHHhh--ccHHHHHHHHHHHHHHHhh
Q psy6547         104 IVILGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYG-GNPLACKLAMTAL-DVILE--ENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l-~~~~~--~~~~~~~~~~~~~l~~~l~  178 (266)
                      +.+++|++ +| .++|+++++ +++.+.+........++ .....++++..++ +....  +++.++++++++++++.|+
T Consensus       223 ~~S~~K~l-~g-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  300 (416)
T PRK00011        223 TTTTHKTL-RG-PRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA  300 (416)
T ss_pred             EecCCcCC-CC-CCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44589999 45 689999985 67776665332222222 2222333333333 32221  4577888899999999998


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C------CCCEEEEecc----CCCCH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I------SNNIIRLSPA----LNITE  244 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~------~~~~iR~~~~----~~~t~  244 (266)
                      + ++....    . .+..++++++.+++. +.+..++.+.|.++||.+..    .      .+..+|++..    ..+++
T Consensus       301 ~-~g~~~~----~-~~~~~~~~~i~~~~~-~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~  373 (416)
T PRK00011        301 E-RGFRVV----S-GGTDNHLVLVDLRSK-GLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKE  373 (416)
T ss_pred             h-CCCeee----e-cCCCCeEEEEeCccc-CCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCH
Confidence            7 542111    1 111224888888541 33567899999999999973    1      2356899643    25789


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINT  260 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~  260 (266)
                      +|++++++.|++++..
T Consensus       374 ~di~~l~~~l~~~~~~  389 (416)
T PRK00011        374 AEMKEIAELIADVLDN  389 (416)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988765

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.65  E-value=2.5e-15  Score=131.11  Aligned_cols=187  Identities=15%  Similarity=0.177  Sum_probs=123.0

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++.+  .+++++|+++.++|+.|.+.    ++++|.++|+++|+++|+|++|... ....+.
T Consensus       115 ~~~g~~v~~v~~~d~~~l~~~i--~~~tklV~le~p~np~g~~~----dl~~I~~la~~~gi~livD~a~~~~-~~~~pl  187 (380)
T TIGR01325       115 PRFGIEVSFVDPTDLNAWEAAV--KPNTKLVFVETPSNPLGELV----DIAALAELAHAIGALLVVDNVFATP-VLQQPL  187 (380)
T ss_pred             HHhCCEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence            3357788999999999999998  44689999999999888887    8999999999999999999999532 111111


Q ss_pred             ccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        94 ~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                           ...+|+++  ++|+++|+..++ |++++++++.+.+...........++..+..++..++.+..  ..++..+++
T Consensus       188 -----~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a  260 (380)
T TIGR01325       188 -----KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSA  260 (380)
T ss_pred             -----hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHH
Confidence                 22345554  899998531454 77888888777665432222233455555555555544332  345555666


Q ss_pred             HHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547         171 EIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK  220 (266)
Q Consensus       171 ~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (266)
                      ..+.+.|++ .+      .+..+..         ..+.|.   ++.|++..  .....+|.+.|+
T Consensus       261 ~~la~~L~~-~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~---~~s~~l~~--~~~~~~f~~~l~  319 (380)
T TIGR01325       261 LAIAEWLQA-QPQVQAVYYPGLPDHPQHELARRQQSGGGT---VIGFDVAD--RAAAWKVLDAVE  319 (380)
T ss_pred             HHHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEECC--HHHHHHHHHcCC
Confidence            667777765 33      1222211         124567   99999973  345667777664

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.65  E-value=3.2e-15  Score=130.71  Aligned_cols=221  Identities=14%  Similarity=0.126  Sum_probs=143.3

Q ss_pred             CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      +.++..++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|+.. ..+.+  . 
T Consensus       125 gi~~~~~~~~d~~~l~~~i--~~~tklV~lesp~NptG~v~----dl~~I~~la~~~g~~vivD~a~a~~-~~~~p--l-  194 (386)
T PRK06767        125 MITHSFCDMETEADIENKI--RPNTKLIFVETPINPTMKLI----DLKQVIRVAKRNGLLVIVDNTFCSP-YLQRP--L-  194 (386)
T ss_pred             CeEEEEeCCCCHHHHHHhh--CcCceEEEEeCCCCCCceec----CHHHHHHHHHHcCCEEEEECCCccc-ccCCc--h-
Confidence            4455666667899999998  44789999999999999887    7999999999999999999999421 11221  1 


Q ss_pred             cCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      ..+.+..+.+++|.++| | .++ |+++++++.++.+... ........+++.+.++...|+.+  +...++.++++..+
T Consensus       195 ~~g~Div~~S~sK~l~g~g-~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~l  271 (386)
T PRK06767        195 ELGCDAVVHSATKYIGGHG-DVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKI  271 (386)
T ss_pred             hcCCcEEEecCcceecCCC-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHH
Confidence            23444444458899985 5 664 8888888776554311 11111123555555554444322  23456677888888


Q ss_pred             HHHhhccccc-CCCc--c------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------------
Q psy6547         174 RSELSSPANK-SKAS--F------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---------------  229 (266)
Q Consensus       174 ~~~l~~~~~~-~~~~--~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------  229 (266)
                      .+.|++ .+. ..+.  .      ...+.|.   ++.|.+... ..++.+|++.|...++.++.+               
T Consensus       272 a~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg---~vsf~l~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~  346 (386)
T PRK06767        272 VSFLKN-HDAVEGVWYPEGELASRQMKRGGG---VISFSIKGG-KEETQAFINDLHFITIAVSLGDTETLIQHPATMTHA  346 (386)
T ss_pred             HHHHHc-CCCccEEECCCcHHHHHhCCCCCc---eEEEEEcCC-HHHHHHHHHhCCccEEecCCCCcCccccCCCccccc
Confidence            888887 432 1111  0      0224466   899998641 345778999998776655422               


Q ss_pred             ------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 ------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 ------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                  ..+.+|+|+.+.    |.+.+++.|+++++
T Consensus       347 ~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~  384 (386)
T PRK06767        347 AIPAELRQEMGIYDNLIRLSVGLE----SWEDIVSDLEQALK  384 (386)
T ss_pred             cCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Confidence                        136899995554    46666777777765

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.65  E-value=2.8e-15  Score=130.19  Aligned_cols=221  Identities=14%  Similarity=0.129  Sum_probs=142.0

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~   92 (266)
                      ..++.+++.++..|++++++++  ++++++|+++.++|+.+.+    .++++|.++|+++|+++|+||+|. ++  .+.+
T Consensus       112 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklv~le~P~NP~~~~----~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p  183 (366)
T PRK08247        112 KKWNVRFVYVNTASLKAIEQAI--TPNTKAIFIETPTNPLMQE----TDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP  183 (366)
T ss_pred             hccCceEEEECCCCHHHHHHhc--ccCceEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcccc--ccCc
Confidence            3467889999988999999999  4478999998888775544    599999999999999999999993 22  1111


Q ss_pred             cccccCCCCcCeeeecccccC--Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSG--GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                        . ..+.+..+.++||.++|  + ...|+++++ +++.+.+...........++..+..+...++.+.  ...++.+++
T Consensus       184 --~-~~g~di~i~S~sK~~~g~~d-~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~  257 (366)
T PRK08247        184 --L-EEGADIVIHSATKYLGGHND-VLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEEN  257 (366)
T ss_pred             --h-hcCCcEEEeecceeccCCCc-eeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHH
Confidence              1 23445556669999984  4 467888876 5666655533333344566776666666555332  234455777


Q ss_pred             HHHHHHHhhcccccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHH----------HCCceeccC---------
Q psy6547         170 GEIFRSELSSPANKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMK----------DAGLVTKPI---------  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~gi~~~~~---------  229 (266)
                      ++.+.+.|++ .+  .+. ...++.|.   ++.|.+..  .....+|.+.+.          .+++++.|.         
T Consensus       258 a~~l~~~L~~-~p--~v~~v~~P~~gg---~~sf~~~~--~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~  329 (366)
T PRK08247        258 AKAIAAFLNE-QP--GVTDVLYPGRGG---MLSFRLQD--EEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPE  329 (366)
T ss_pred             HHHHHHHHHh-CC--CeeEEecCCcCc---EEEEEECC--HHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCH
Confidence            7888888877 32  221 11233567   88887743  222334444332          123333332         


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                              ..+.+|+|..+.    +.+.+++.|+++++.
T Consensus       330 ~~r~~~gi~~~~~R~svGlE----~~~dl~~dl~~al~~  364 (366)
T PRK08247        330 EIRIANGVCNRLLRFSVGIE----NVEDLIADLKQAFKQ  364 (366)
T ss_pred             HHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence                    236899995544    566677777777654

>PRK06460 hypothetical protein; Provisional

Probab=99.64  E-value=5.4e-15  Score=128.71  Aligned_cols=225  Identities=12%  Similarity=0.111  Sum_probs=141.9

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.++.+.+++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+||+|... ..... 
T Consensus       106 ~~~G~~v~~~~~~~~~~l~~~~--~~~tklV~l~sp~NPtG~v~----d~~~I~~la~~~g~~vivDea~~~~-~~~~~-  177 (376)
T PRK06460        106 KNWGVNVDASNPGSDNIIEKAK--SKRYDVVFVENITNPLLRVV----DITELSKVCKENGSILIVDATFSTP-INQKP-  177 (376)
T ss_pred             HhhCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCcCcc-ccCCh-
Confidence            3456778888887766676655  45789999999999999886    7789999999999999999999532 11111 


Q ss_pred             ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       . .++.+..+.++||+++|  + .++|++++++++.+.+.........+.++..+..++..++.++  ...+++.++++
T Consensus       178 -l-~~~~divv~S~sK~l~G~~~-~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~  252 (376)
T PRK06460        178 -L-ELGADIVVHSASKFLAGHND-VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAE  252 (376)
T ss_pred             -h-hcCCCEEEeecceeccCCCC-ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHH
Confidence             1 12334444559999974  3 4689999998888777643333333345544444444444432  34566777778


Q ss_pred             HHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------ee
Q psy6547         172 IFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VT  226 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~  226 (266)
                      .+.+.|++ .+.      +.++..         ..+.|.   ++.|++... .....+|++.|.  ..+.        +.
T Consensus       253 ~l~~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg---~~s~~~~~~-~~~~~~~~~~l~~~~~~~s~Gg~~sl~~  327 (376)
T PRK06460        253 QIAEFLEG-HPKVVKVYYPGLKSHVDYEIARRVLKGFGG---VLSFEVNGG-QESALKVMKSLKLIIPAQTLGGVNSVIS  327 (376)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEEcCc-HHHHHHHHHhCCcceeccCCCCCceEEe
Confidence            88887776 321      222110         124567   999999641 234556666663  1111        11


Q ss_pred             ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .|.                 ..+.+|+|+.+.    |.+.+++.|+++++.
T Consensus       328 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~  374 (376)
T PRK06460        328 HPATMSHRTLSLEERKIVGITDSLLRLSVGIE----DVNDLIEDLDRALST  374 (376)
T ss_pred             CccccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence            110                 247899995544    566677777777764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.63  E-value=9.1e-15  Score=128.03  Aligned_cols=227  Identities=11%  Similarity=0.102  Sum_probs=146.9

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|..+. .+..  
T Consensus       126 ~~Gi~v~~vd~~d~e~l~~~i--~~~tklV~ie~p~NPtg~v~----dl~~I~~la~~~gi~livD~t~a~~~-~~~~--  196 (398)
T PRK08249        126 RMGVDVTLCETGDHEQIEAEI--AKGCDLLYLETPTNPTLKIV----DIERLAAAAKKVGALVVVDNTFATPI-NQNP--  196 (398)
T ss_pred             hCCeEEEEcCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccC----CHHHHHHHHHHcCCEEEEECCcCccc-cCCc--
Confidence            456778888888999999999  44689999998889999887    79999999999999999999996331 1111  


Q ss_pred             cccCCCCcCeeeecccccCCchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      . ..+.+..+.+++|.++|..-++ |++++++++.+.+...........++..+..+...++.+.  ...++..+++..+
T Consensus       197 l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~--~R~~~~~~na~~l  273 (398)
T PRK08249        197 L-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLK--LRVRQQQESAMAL  273 (398)
T ss_pred             h-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHH--HHHHHHHHHHHHH
Confidence            1 1333444455889998521344 6677788877766544344445667777777776666543  2345556677777


Q ss_pred             HHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc-------eec-c
Q psy6547         174 RSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL-------VTK-P  228 (266)
Q Consensus       174 ~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi-------~~~-~  228 (266)
                      .+.|++ .+      .+.+...         ..+.|.   ++.|++... .....+|++.|.  ..+.       ++. |
T Consensus       274 a~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~sf~~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~  348 (398)
T PRK08249        274 AKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGG---ILSFVLKGG-MDTVKRLLPKLRYAHRAANLGAVETIYGPA  348 (398)
T ss_pred             HHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEEcCC-HHHHHHHHHhCCcceEccCCCCCCceeeCC
Confidence            777775 22      1222211         124567   899999641 223556666654  2222       111 1


Q ss_pred             C-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         229 I-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       229 ~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .                 ..+.+|+|..+.    +.+.+++.|+++++...
T Consensus       349 ~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~~  395 (398)
T PRK08249        349 RTTSHVENTLEERAALGIPEGLVRISVGIE----DTEDLIADLEQAFAHLE  395 (398)
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHHhh
Confidence            0                 136899995554    55666777777776543

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.62  E-value=6.8e-15  Score=128.95  Aligned_cols=224  Identities=14%  Similarity=0.132  Sum_probs=142.7

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... .....  
T Consensus       127 ~~G~~v~~vd~~d~e~l~~ai--~~~tklV~lesp~NptG~v~----dl~~I~~la~~~gi~lvvD~a~a~~-~~~~~--  197 (398)
T PRK07504        127 RYGIESTLVDGLDLDNWEKAV--RPNTKVFFLESPTNPTLEVI----DIAAVAKIANQAGAKLVVDNVFATP-LFQKP--  197 (398)
T ss_pred             hcCeEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCcEec----CHHHHHHHHHHcCCEEEEECCcccc-ccCCc--
Confidence            346678888888999999999  45789999999999999887    7999999999999999999999532 11111  


Q ss_pred             cccCCCCcCeeeeccccc-CCchhhh-hheecHHhhh-ccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALS-GGLYPIS-AVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~-~g~~~~g-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       ...+.+..+.+++|.++ .| .++| +++++++.++ .+...........++..++.+...|+.+..  ..++..++..
T Consensus       198 -~~~gaDivv~S~sK~l~g~g-~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~  273 (398)
T PRK07504        198 -LELGAHIVVYSATKHIDGQG-RCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAA  273 (398)
T ss_pred             -hhhCCCEEEeeccccccCCc-cceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHH
Confidence             12344444455889998 46 7775 5666666553 233211222335677777777777765432  3444456667


Q ss_pred             HHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec---------
Q psy6547         172 IFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK---------  227 (266)
Q Consensus       172 ~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---------  227 (266)
                      .+.+.|++ .+      .+.+...         ..+.|.   ++.|++... .....+|++.|.=-.+.+.         
T Consensus       274 ~la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~~~~~l~~~~~~~slG~~~sl~~  348 (398)
T PRK07504        274 AIADFLAG-HPKVARVIYPGRADHPQADIIAKQMTGGST---LVAFELKGG-KEAAFRFLNALKIVRISNNLGDAKSLIT  348 (398)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCccHHHHHHhCCCCcc---EEEEEeCCC-HHHHHHHHHhCCcceecccCCCCCeeee
Confidence            77777765 22      1222221         124477   999999641 2345566666642222111         


Q ss_pred             -cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 -PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 -~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       |.                 ..+.+|+|..+.    +.+.+++.|+.+++.
T Consensus       349 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~  395 (398)
T PRK07504        349 HPATTTHKNLSPEARAELGISEGFLRLSAGLE----DTDDLIEDLAAALKK  395 (398)
T ss_pred             CCCCCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence             10                 236899996655    456667777776654

>PRK14012 cysteine desulfurase; Provisional

Probab=99.62  E-value=4e-14  Score=124.71  Aligned_cols=225  Identities=13%  Similarity=0.135  Sum_probs=139.0

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.+     |+++|++++  .++++++++..++|++|.+.    ++++|.++|+++|+++++|++|+ ++..  
T Consensus       118 g~~~~~v~~~~~g~~d~~~l~~~i--~~~t~lv~~~~~~n~tG~~~----~~~~I~~la~~~g~~vivD~a~~-~g~~--  188 (404)
T PRK14012        118 GFEVTYLDPQSNGIIDLEKLEAAM--RDDTILVSIMHVNNEIGVIQ----DIAAIGEICRERGIIFHVDAAQS-VGKV--  188 (404)
T ss_pred             CCEEEEEccCCCCcCCHHHHHHhc--CCCCEEEEEECcCCCccchh----hHHHHHHHHHHcCCEEEEEcchh-cCCc--
Confidence            4566666542     799999999  44688999999999999887    89999999999999999999995 3211  


Q ss_pred             ccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547          92 LLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--E  160 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~  160 (266)
                      .+...  ...+|+.++|  |.+++  .+.|+++.+++....+.+...       ....+.+.....+..++++....  +
T Consensus       189 ~~~~~--~~~~D~~~~s~~K~~gp--~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~  264 (404)
T PRK14012        189 PIDLS--KLKVDLMSFSAHKIYGP--KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMA  264 (404)
T ss_pred             ccCcc--cCCCCEEEEehhhccCC--CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHH
Confidence            11222  2356777655  97763  247888777654333332111       11112333344444455554432  3


Q ss_pred             cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------  229 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------  229 (266)
                      +..++.+++.+++.+.|++ +.. ............ +..++|...+     ..++...|.+.+|-..    +.      
T Consensus       265 ~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~~i~~g~~~~~~~~~~~~  337 (404)
T PRK14012        265 TENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPG-NLNVSFNYVE-----GESLIMALKDLAVSSGSACTSASLEPSY  337 (404)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCC-EEEEEEeCcC-----HHHHHHhCCCeEEEchhhhCCCCCCCCH
Confidence            4667778888888888876 432 111110101111 0134444333     3456666643222211    11      


Q ss_pred             -----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 -----------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 -----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                 ..+.+|++++..+|++|++++++.|+++++.+
T Consensus       338 ~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        338 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL  380 (404)
T ss_pred             HHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                       13789999999999999999999999988764

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.62  E-value=1.2e-13  Score=123.28  Aligned_cols=221  Identities=13%  Similarity=0.061  Sum_probs=145.4

Q ss_pred             eecCC------CHHHHHHHHhcCCCEEEEEE-ccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-c
Q psy6547          22 IIPYN------DVDALEAKLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-L   93 (266)
Q Consensus        22 ~~~~~------d~~~l~~~l~~~~~~~~i~~-~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~   93 (266)
                      .++++      |+++|++++++. ++++|++ +++   .|...    ++++|+++|+++|+++++|++|. +|..+.. .
T Consensus       160 ~y~~~~~~g~iD~d~Le~~l~~~-~pklIv~~~S~---~s~~~----D~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~  230 (475)
T PLN03226        160 PYRLDESTGLIDYDKLEKKAMLF-RPKLIIAGASA---YPRDW----DYARMRKIADKVGALLMCDMAHI-SGLVAAQEA  230 (475)
T ss_pred             eeeecCCCCCcCHHHHHHHHhhc-CCeEEEEecCc---CCCcc----CHHHHHHHHHHcCCEEEEEchhh-hCcccCCCC
Confidence            45567      999999999654 4566666 333   34443    78899999999999999999993 2222211 1


Q ss_pred             ccccCCCCcCeeeecccccCCchhhhhheecHHhh-----------h---ccCCC-CCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM-----------G---TLVPG-THGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~-----------~---~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      .....+.+.-+.+++|+|.|.  +.|+++++++..           +   .+... .....-++++...++..++++.+.
T Consensus       231 ~~p~~~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~  308 (475)
T PLN03226        231 ASPFEYCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM  308 (475)
T ss_pred             CCCCCCCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh
Confidence            111113333334488999764  357777776533           1   11111 111222345666777778888886


Q ss_pred             hc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------
Q psy6547         159 EE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------  229 (266)
Q Consensus       159 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------  229 (266)
                      ..   .+.+++.++.+++++.|.+ .+...+.     .+.+++++.+++... +.+..++.+.|.+.||.+...      
T Consensus       309 ~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~-----~~t~~hi~lv~~~~~-gi~~~~~~~~L~~~~I~~nk~~~p~~~  381 (475)
T PLN03226        309 TPEFKAYQKQVKANAAALANRLMS-KGYKLVT-----GGTDNHLVLWDLRPL-GLTGSRVEKVLDLAHITLNKNAVPGDS  381 (475)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEc-----CCCCCCEEEEEccCC-CCCHHHHHHHHHHCCCEECCCCCCCCc
Confidence            54   4788999999999999887 5432222     122334777777331 567788999999999998642      


Q ss_pred             ---CCCEEEE----eccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ---SNNIIRL----SPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ---~~~~iR~----~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                         .+..+|+    ..+..++++|++++.+.|.++++.
T Consensus       382 ~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        382 SALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             ccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence               3567898    345789999999999999998874

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.62  E-value=1.2e-14  Score=127.57  Aligned_cols=224  Identities=16%  Similarity=0.155  Sum_probs=140.5

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++++  .+++++|+++.+.|++|.+.    ++++|.++|+++|+++|+|++|... ....+ 
T Consensus       131 ~~~G~~v~~vd~~d~~~l~~ai--~~~tklV~~esp~Nptg~v~----dl~~I~~la~~~g~~vivD~a~a~~-~~~~~-  202 (403)
T PRK07810        131 PRWGVETVFVDGEDLSQWEEAL--SVPTQAVFFETPSNPMQSLV----DIAAVSELAHAAGAKVVLDNVFATP-LLQRG-  202 (403)
T ss_pred             HHcCcEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCCcc-ccCCh-
Confidence            4468899999999999999999  45789999999999999887    8999999999999999999999421 11111 


Q ss_pred             ccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhh-ccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                       . ..|.+..+.+++|.++| | .++ |+++++++.+. .++..........++..++.+...|+.+.  ...++..++.
T Consensus       203 -~-~~gaDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a  277 (403)
T PRK07810        203 -L-PLGADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASA  277 (403)
T ss_pred             -h-hcCCcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHH
Confidence             1 23444444458899985 5 555 77777776543 23322122233567777777776665442  2345555566


Q ss_pred             HHHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeC---ccchHHHHHHHHH--H--------C
Q psy6547         171 EIFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVS---AILEVYDVCIKMK--D--------A  222 (266)
Q Consensus       171 ~~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~--~--------~  222 (266)
                      ..+.+.|++ .+.      +.+...         ..+.|.   ++.|++...   +...+.+|++.|+  .        +
T Consensus       278 ~~~a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~---~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~  353 (403)
T PRK07810        278 LRIAEFLEG-HPAVRWVRYPFLPSHPQYDLAKRQMSGGGT---VVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAK  353 (403)
T ss_pred             HHHHHHHhc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCc
Confidence            666666665 221      222111         124567   899998641   1123455666443  1        1


Q ss_pred             CceeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       223 gi~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .++..|.                 ..+.+|+|..+.    +.+.+++.|++++
T Consensus       354 sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE----~~~dli~dl~~Al  402 (403)
T PRK07810        354 SLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLE----DTDDLIADLDRAL  402 (403)
T ss_pred             ceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHhh
Confidence            2222221                 236799995544    4566666666654

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.62  E-value=2.3e-14  Score=123.86  Aligned_cols=219  Identities=16%  Similarity=0.184  Sum_probs=139.0

Q ss_pred             CCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++.      .|++++++.+  .+++++|++++   ++|...    ++++|.++|+++|+++|+|++|+ ++..
T Consensus        78 ~g~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~---~~G~~~----~~~~i~~l~~~~~i~li~D~a~~-~g~~  147 (352)
T cd00616          78 LGATPVFVDIDPDTYNIDPELIEAAI--TPRTKAIIPVH---LYGNPA----DMDAIMAIAKRHGLPVIEDAAQA-LGAT  147 (352)
T ss_pred             cCCeEEEEecCCCcCCcCHHHHHHhc--CcCCeEEEEEC---CCCCcC----CHHHHHHHHHHcCCeEEEECCCC-CCCe
Confidence            3445555543      2689999988  45688888764   356554    79999999999999999999995 2211


Q ss_pred             CcccccccCCCCcCeeeec----ccccCCchhhhhheec-HHhhhccCCC----C-----------CCCCCCCcHHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLAD-DEVMGTLVPG----T-----------HGSTYGGNPLACKL  149 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~-~~~~~~~~~~----~-----------~~~~~~~~~~~~~a  149 (266)
                         +.....+...|+.++|    |++++|  +.|+++.+ +++.+.++..    .           ...++..+++.++.
T Consensus       148 ---~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  222 (352)
T cd00616         148 ---YKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAI  222 (352)
T ss_pred             ---ECCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHH
Confidence               1111122224555555    999654  46767664 4665544321    0           01123455555555


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccE--EecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKL--SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      +...++.+  ++..++.+++.+++++.|.+ +.. ..+....  .....   ++.+.+.+..+.+..++.+.|.++||.+
T Consensus       223 ~~~~l~~~--~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~L~~~gI~~  296 (352)
T cd00616         223 GLAQLEKL--DEIIARRREIAERYKELLAD-LPGIRLPDVPPGVKHSYH---LYVIRLDPEAGESRDELIEALKEAGIET  296 (352)
T ss_pred             HHHHHHhh--HHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCceeeE---EEEEEECCcCCCCHHHHHHHHHHCCCCe
Confidence            55544433  45677888899999999987 432 2222101  11222   6666665311347889999999999976


Q ss_pred             ccCC---------------------------CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         227 KPIS---------------------------NNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       227 ~~~~---------------------------~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      ....                           .+.+|++++..+|++|++++++.|+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         297 RVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             eeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            5210                           1579999999999999999998874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.60  E-value=3.5e-14  Score=124.86  Aligned_cols=227  Identities=15%  Similarity=0.149  Sum_probs=139.5

Q ss_pred             CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cC--C-cCcccccc
Q psy6547          26 NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LG--R-TGKLLAIH   96 (266)
Q Consensus        26 ~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~--~-~g~~~~~~   96 (266)
                      .|+++|++.+.+.  +++++|+++.++|++|..+++.+.+++|.++|++||++||.|+++..    |.  + .|.. ...
T Consensus       136 iD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~-~~s  214 (431)
T cd00617         136 IDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYR-DKS  214 (431)
T ss_pred             cCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhccccccc-CCC
Confidence            3899999999543  24888998877777644558999999999999999999999999731    10  0 0110 000


Q ss_pred             cCCCCcCeeeeccccc-CCchh------hhhheecH-HhhhccCCC----CCCCCCCC-cHHHHHHHHHHHHHHhhccHH
Q psy6547          97 YEDVRPDIVILGKALS-GGLYP------ISAVLADD-EVMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEENMI  163 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~-~g~~~------~g~~~~~~-~~~~~~~~~----~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~  163 (266)
                      ...+...+.++||.+. +| ++      .||++++. ++.+.++..    ....++++ +.--+++...+|+.....++.
T Consensus       215 i~ei~~e~~s~sd~~~mS~-~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l  293 (431)
T cd00617         215 IAEIAREMFSYADGCTMSA-KKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYL  293 (431)
T ss_pred             HHHHHHHhhccCCEEEEEe-ecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHH
Confidence            0011112223444333 22 32      55788876 577776532    11222222 222233333356543223445


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHH-HCCceecc-C------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMK-DAGLVTKP-I------  229 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~gi~~~~-~------  229 (266)
                      ++..+.++++.+.|++ .+.+..   .+..|+   +++++...-      +..++.+|+.+|. +.||.+.- +      
T Consensus       294 ~~~~~~r~~l~~~L~~-~G~~v~---~P~Ggh---~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~  366 (431)
T cd00617         294 RHRVEQVRYLGDRLDE-AGVPIV---EPAGGH---AVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGR  366 (431)
T ss_pred             HHHHHHHHHHHHHHHH-CCCCcc---CCCcce---EEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceeccc
Confidence            5555566888899888 554322   234566   788886631      1235888987765 66787532 0      


Q ss_pred             ----------CCCEEEEeccC-CCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ----------SNNIIRLSPAL-NITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ----------~~~~iR~~~~~-~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                ..+.+|++.+- ..|.++++.+.++|.+..++.
T Consensus       367 ~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~  409 (431)
T cd00617         367 DPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR  409 (431)
T ss_pred             CCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence                      13789998774 779999999999999987764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.60  E-value=3.8e-14  Score=124.41  Aligned_cols=225  Identities=15%  Similarity=0.103  Sum_probs=146.3

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCCcCc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~~g~   91 (266)
                      ..++.+++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++  |+++|+||+|... ..+.
T Consensus       125 ~~~G~~v~~vd~~d~e~l~~~i--~~~tklI~iesP~NPtG~v~----dl~~I~~la~~~~~~i~livDea~~~~-~~~~  197 (400)
T PRK06234        125 TRYGVEVTFVDTSNLEEVRNAL--KANTKVVYLETPANPTLKVT----DIKAISNIAHENNKECLVFVDNTFCTP-YIQR  197 (400)
T ss_pred             hhCCeEEEEECCCCHHHHHHHh--ccCCeEEEEECCCCCCCCcC----CHHHHHHHHHhcCCCCEEEEECCCCch-hcCC
Confidence            4467888999999999999999  45689999999999999887    799999999997  9999999999532 1122


Q ss_pred             ccccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                      ..   ..+.+..+.+++|.+++ | .++ ||+++++++.+.++..  ........++..+..+...|+.+  +...++..
T Consensus       198 ~l---~~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl--~~r~~~~~  271 (400)
T PRK06234        198 PL---QLGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL--QIRMEKHC  271 (400)
T ss_pred             ch---hhCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHH
Confidence            11   22444445558899984 5 554 8899998887776531  11223456777666666655432  22344555


Q ss_pred             HHHHHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---
Q psy6547         168 KMGEIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---  229 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---  229 (266)
                      ++...+.+.|++ .+      .+.+...         ..+.|.   ++.|++... .....+|++.|.--++.+..+   
T Consensus       272 ~na~~~a~~L~~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~---l~s~~l~~~-~~~~~~f~~~l~~~~~~~s~G~~~  346 (400)
T PRK06234        272 KNAMKVAKFLES-HPAVEKVYYPGLESFEYYELAKKQMSLPGA---MISFELKGG-VEEGKVVMNNVKLATLAVSLGDAE  346 (400)
T ss_pred             HHHHHHHHHHHc-CCCeeEEECCCCCCCCcHHHHHHhCCCCCc---eEEEEecCc-HHHHHHHHHhCCcceEeccCCCCC
Confidence            666667777765 22      1222110         124566   899998641 234567777776444332211   


Q ss_pred             ------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ------------------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                              ..+.+|+|+.+.    +.+.+++.|.++++.
T Consensus       347 sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~~  397 (400)
T PRK06234        347 TLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLE----DVDDIIADLKQALDL  397 (400)
T ss_pred             ceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCC----CHHHHHHHHHHHHHH
Confidence                                    236899996655    455556666666654

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.59  E-value=2.5e-14  Score=119.82  Aligned_cols=243  Identities=15%  Similarity=0.150  Sum_probs=145.2

Q ss_pred             cCccccc---CCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH-HHhcCCEEE
Q psy6547           7 PTSYNEF---GPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFI   78 (266)
Q Consensus         7 ~~~~~~~---~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l-~~~~g~~li   78 (266)
                      |++.++|   +.++-+.+.||.    +|+|.+|+++++++.+|+|.|.|.++|+..+++|.+..++++++ +...+..|+
T Consensus       132 PGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~  211 (425)
T PF12897_consen  132 PGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF  211 (425)
T ss_dssp             S--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred             CCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence            4455555   566777778875    38999999998899999999999877766666999999999999 446899999


Q ss_pred             EeccccC--cCCcCc-cc------ccccCC---CCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHH
Q psy6547          79 ADEVQTG--LGRTGK-LL------AIHYED---VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLA  146 (266)
Q Consensus        79 ~De~~~~--~~~~g~-~~------~~~~~~---~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (266)
                      .|++|+=  +..... ..      .....|   ....+.+.||.--+| -.++++.++++.++.+.......+.+..-+.
T Consensus       212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~~~~~tIgpdKvN  290 (425)
T PF12897_consen  212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKHLSVQTIGPDKVN  290 (425)
T ss_dssp             EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred             eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence            9999931  211111 10      011122   233455588965555 5699999999888877755556666667777


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-------cccc-c-CCCcccEEecCccceeeEEEEeeCccchHHHHHH
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELS-------SPAN-K-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCI  217 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  217 (266)
                      |......+...+ .++.+|.++.++.++-+++       +-++ . ....+..+..|-   |++++..+  + .++.+++
T Consensus       291 QLRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGY---FIsld~~~--G-~AkrvV~  363 (425)
T PF12897_consen  291 QLRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGY---FISLDVLD--G-TAKRVVE  363 (425)
T ss_dssp             HHHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS----EEEEEST--T--HHHHHH
T ss_pred             HHHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCce---EEEEecCC--C-hHHHHHH
Confidence            766655444321 2677777776666654333       2233 2 233443455677   89999887  3 4889999


Q ss_pred             HHHHCCceeccCC----------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         218 KMKDAGLVTKPIS----------NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       218 ~l~~~gi~~~~~~----------~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .+++.||.+++.+          ...||++|++- +.++++.+++.+.-.+
T Consensus       364 lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  364 LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCV  413 (425)
T ss_dssp             HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHH
T ss_pred             HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHH
Confidence            9999999999742          36899999976 8999999999887554

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.59  E-value=4.6e-14  Score=122.26  Aligned_cols=219  Identities=11%  Similarity=0.081  Sum_probs=145.4

Q ss_pred             CceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccC
Q psy6547          19 GYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   98 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~   98 (266)
                      ++..++.+..++++..+  ++++++|.+++..+.+|.+.    ++++|   ++++|+++++|-+++ ++  +....++  
T Consensus       109 ~~~~~~~~~~~~~~~~~--~~~~~lV~~~h~et~tG~~~----pi~~I---~~~~g~~~iVDavqs-~g--~~~idv~--  174 (361)
T TIGR01366       109 EPIIVTADPGSAPEPQA--DPGVDVIAWAHNETSTGVAV----PVRRP---EGSDDALVVIDATSG-AG--GLPVDIA--  174 (361)
T ss_pred             CceEEecCCCCCCCCcc--CCCCCEEEEcccCCccceec----ccccc---cccCCCeEEEEcCcc-cc--CCCCCHH--
Confidence            45555543333344333  55899999999999999986    66666   589999999999995 32  1222333  


Q ss_pred             CCCcCeee--ecccccCCchhhhhheecHHhhhccCCCC---------------------CCCCCCCcHHHHHHHHHHHH
Q psy6547          99 DVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        99 ~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~  155 (266)
                      .  .|+++  ..|++++. -.++++..++++++.++...                     ....++++.....+..++++
T Consensus       175 ~--~D~~~~s~~K~lg~~-~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~  251 (361)
T TIGR01366       175 E--TDVYYFAPQKNFASD-GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQID  251 (361)
T ss_pred             H--CCEEEEEchhhcCCC-CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHH
Confidence            2  46555  44999843 12555566887776654211                     11223344444557778888


Q ss_pred             HHhhc----cHHHHHHHHHHHHHHHhhccccc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         156 VILEE----NMIENAYKMGEIFRSELSSPANK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       156 ~~~~~----~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      .+.++    ...++.+++.+++++.+.+ ++. ..+.... .....   +..+.+++  +.++.++.+.|.++||.+.++
T Consensus       252 ~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~---v~~v~~~~--g~~~~~v~~~L~~~gI~i~~~  325 (361)
T TIGR01366       252 WMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQV---VGTIDFVD--DIDAATVAKILRANGIVDTEP  325 (361)
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccc---eEEEECCC--ccCHHHHHHHHHHCCCeeccC
Confidence            87654    3567778888889988888 553 2221101 11122   23344444  678899999999999998765


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          ..+.+|++++..+|++|++++++.|++++++
T Consensus       326 ~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       326 YRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             ccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence                3467999999999999999999999998765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.59  E-value=2.3e-14  Score=125.33  Aligned_cols=224  Identities=14%  Similarity=0.136  Sum_probs=137.8

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ....+.
T Consensus       122 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklV~ie~p~NptG~v~----dl~~I~~la~~~gi~livD~t~~~~-~~~~pl  194 (390)
T PRK08133        122 ARFGIETTFVDLTDLDAWRAAV--RPNTKLFFLETPSNPLTELA----DIAALAEIAHAAGALLVVDNCFCTP-ALQQPL  194 (390)
T ss_pred             HHcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCCcC----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence            3467889999999999999999  45789999999999999886    8999999999999999999998422 111111


Q ss_pred             ccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                         ..+.+..+.+++|.+++ | .++ |+++++++.++.+...........++..+..++..++.+.  ...++..+++.
T Consensus       195 ---~~g~Divv~S~sK~~~g~g-~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~--~R~~~~~~~a~  268 (390)
T PRK08133        195 ---KLGADVVIHSATKYLDGQG-RVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLS--LRMEAHSANAL  268 (390)
T ss_pred             ---hhCCcEEEeecceeecCCc-ceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHH--HHHHHHHHHHH
Confidence               22334444558899984 5 666 5677777766555432222333455555555554444322  12334445555


Q ss_pred             HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCce-------e-
Q psy6547         172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV-------T-  226 (266)
Q Consensus       172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~-------~-  226 (266)
                      .+.+.|++ .+      .+.+..         ...+.|.   ++.|++.. +.....+|++.|.  ..+.-       + 
T Consensus       269 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~---~~s~~l~~-~~~~~~~f~~~l~l~~~~~slG~~~sl~~  343 (390)
T PRK08133        269 ALAEWLEA-HPGVERVFYPGLPSHPQHELAKRQQKGGGA---IVSFEVKG-GREAAWRVIDATRLISITANLGDTKTTIT  343 (390)
T ss_pred             HHHHHHHh-CCCeeEEECCCCCCCccHHHHHHhCCCCce---EEEEEEcC-CHHHHHHHHHhCCcceEeccCCCcceeee
Confidence            66666664 21      122211         0224566   99999964 1223556666654  21111       1 


Q ss_pred             ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         227 KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       227 ~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .|.                 ..+.||+|..+.    +.+.+++.|+.+++
T Consensus       344 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~  389 (390)
T PRK08133        344 HPATTTHGRLSPEARAAAGITEGLIRVAVGLE----DVADIKADLARGLA  389 (390)
T ss_pred             cCCCCCcccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHhh
Confidence            110                 246899996554    45666777776654

>PRK05968 hypothetical protein; Provisional

Probab=99.58  E-value=4.4e-14  Score=123.55  Aligned_cols=222  Identities=14%  Similarity=0.007  Sum_probs=140.5

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ..+.+++.++.+|++++++.+  . ++++|+++.+.++.    ++..++++|.++|+++|+++|+|++|.... ...+  
T Consensus       125 ~~G~~v~~vd~~d~~~l~~~i--~-~tklV~ie~pt~~~----~~~~dl~~i~~la~~~gi~vivD~a~a~~~-~~~p--  194 (389)
T PRK05968        125 RMGVEVDYVDGRDEEAVAKAL--P-GAKLLYLESPTSWV----FELQDVAALAALAKRHGVVTMIDNSWASPV-FQRP--  194 (389)
T ss_pred             HcCceEEEeCCCCHHHHHHhc--c-cCCEEEEECCCCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcchh-ccCc--
Confidence            357788888888999999988  2 47888888655544    455699999999999999999999995321 1121  


Q ss_pred             cccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCC-CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      . ..|.+..+.+++|.++| |-...|++++++++.+.+..... ......++..+..+...|+.+  +...++-.++...
T Consensus       195 ~-~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~  271 (389)
T PRK05968        195 I-TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALE  271 (389)
T ss_pred             h-hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHH
Confidence            1 23444445558899984 31457888888887766553211 112345666666666666543  3334444555777


Q ss_pred             HHHHhhccccc------CCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------------
Q psy6547         173 FRSELSSPANK------SKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------------  229 (266)
Q Consensus       173 l~~~l~~~~~~------~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------  229 (266)
                      +.+.|++ .+.      +....    ...+.|.   ++.|.+..  +.+..+|++.|...++.++.+             
T Consensus       272 la~~L~~-~p~v~~v~~p~l~~~~~~~~~g~g~---~~sf~~~~--~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~  345 (389)
T PRK05968        272 IARRLKA-HPVVERVCHPALANHPPAGLSGTSG---LFSFIFRE--GIDVRAFADALKLFRLGVSWGGHESLVVPAEVVL  345 (389)
T ss_pred             HHHHHHh-CCCccEEECCCCCCChHHhCCCCce---EEEEEECC--HHHHHHHHHhCCccEEecCCCCCCceeeeCcccc
Confidence            7777776 332      11110    0113456   89999875  457788999997655433211             


Q ss_pred             --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 --------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                    ..+.+|+|+++.++    +.+++.|+++++
T Consensus       346 ~~~~~~~~~~~~gi~~~liR~SvGlE~~----~dl~~dl~~al~  385 (389)
T PRK05968        346 QQKAQPNSAARFGVSPRSVRLHVGLEGT----EALWADLEQALA  385 (389)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHH
Confidence                          14689999777654    444555555554

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.58  E-value=3.6e-13  Score=127.83  Aligned_cols=239  Identities=14%  Similarity=0.104  Sum_probs=159.1

Q ss_pred             cccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .+....+-+|+.++.+     |+++|+++++++ +++++|+++..++.+|...    ++++|.++||++|+++++|.++.
T Consensus       631 a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~----~I~eI~~iah~~Galv~vDgAq~  706 (993)
T PLN02414        631 ASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEE----GIDEICDIIHDNGGQVYMDGANM  706 (993)
T ss_pred             HHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccc----hHHHHHHHHHHcCCEEEEEecCH
Confidence            3444467889999874     799999999643 3789999998888887765    89999999999999999999993


Q ss_pred             CcCCcCcccccccCCCCcCeeee--ccccc-----CCchhhhhheecHHhhhccCCCC-----------C---CCCCC--
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVIL--GKALS-----GGLYPISAVLADDEVMGTLVPGT-----------H---GSTYG--  141 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~--sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~-----------~---~~~~~--  141 (266)
                      - +..+   .........|++++  .|+|+     || ..+|.+.+++.+...+....           .   ..+..  
T Consensus       707 ~-a~~~---l~~p~~~GaD~~~~s~HK~f~~P~G~GG-Pg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a  781 (993)
T PLN02414        707 N-AQVG---LTSPGFIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAA  781 (993)
T ss_pred             H-hccC---cCCccccCCCEEEecCCccCCcCcccCC-CCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccch
Confidence            1 1111   11112345677665  68776     34 45888888888776665321           0   01211  


Q ss_pred             --CcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe---eCccchHH
Q psy6547         142 --GNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS---VSAILEVY  213 (266)
Q Consensus       142 --~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~  213 (266)
                        ++.+.+..+...++.++.+++   .++...++.+++++|.+ .....+.. +.+ .. -.=+.+.+.   +..+.++.
T Consensus       782 ~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~-~~~-~~-~hEfv~~~~~l~~~~g~~~~  857 (993)
T PLN02414        782 PWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRG-KNG-TC-AHEFIIDLRPFKNTAGIEPE  857 (993)
T ss_pred             hhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccC-CCC-Ce-eeeEEEeccccccccCCCHH
Confidence              233444455555666666666   77788899999999987 22211111 111 10 001122222   11135678


Q ss_pred             HHHHHHHHCCceecc---CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         214 DVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       214 ~~~~~l~~~gi~~~~---~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++.++|.+.||..-.   ...+.+|++++...+++|+|++++++..+..+..
T Consensus       858 di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~  909 (993)
T PLN02414        858 DVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA  909 (993)
T ss_pred             HHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999987532   2378999999999999999999999998877754

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.58  E-value=8e-14  Score=122.32  Aligned_cols=187  Identities=14%  Similarity=0.054  Sum_probs=123.2

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      .+..++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+||+|..-... .+  .
T Consensus       123 ~g~~v~~v~~~d~~~l~~~i--~~~tklV~l~~P~NPtG~v~----dl~~I~~la~~~gi~vIvD~a~a~~~~~-~p--l  193 (405)
T PRK08776        123 GHFALITADLTDPRSLADAL--AQSPKLVLIETPSNPLLRIT----DLRFVIEAAHKVGALTVVDNTFLSPALQ-KP--L  193 (405)
T ss_pred             cCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccC----CHHHHHHHHHHcCCEEEEECCCcccccC-Cc--c
Confidence            46678888888999999999  34689999998889999886    8999999999999999999999532111 11  1


Q ss_pred             ccCCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                       .++.+..+.+.+|.++|  + ...|+++. ++++.+.+........+..+++.+.+....++.++  ...++..++...
T Consensus       194 -~~gaDivv~S~tK~l~g~~~-~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~--~r~~~~~~na~~  269 (405)
T PRK08776        194 -EFGADLVLHSTTKYINGHSD-VVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLD--ARLRVHQENADA  269 (405)
T ss_pred             -cccCCEEEecCceeecCCCC-ceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHH--HHHHHHHHHHHH
Confidence             13444444458899984  4 45677766 56666655433233334568888888777776543  345566667777


Q ss_pred             HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547         173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK  220 (266)
Q Consensus       173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (266)
                      +.+.|++ .+      .+.+..         ...+.|.   ++.|++.. +.....+|++.|.
T Consensus       270 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~-~~~~~~~f~~~l~  327 (405)
T PRK08776        270 IAALLDG-HAAVNQVYYPGLASHPGHALAARQQKGFGA---MLSFELEG-GEAAVRAFVDGLR  327 (405)
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCcCHHHHHhcCCCCce---EEEEEEcC-CHHHHHHHHHhCC
Confidence            7777765 32      122211         0135577   99999964 1223456666654

>PRK07049 methionine gamma-lyase; Validated

Probab=99.57  E-value=4.1e-14  Score=124.99  Aligned_cols=228  Identities=11%  Similarity=0.090  Sum_probs=142.3

Q ss_pred             CCCCCceeec-CCCHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh---cCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIP-YNDVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---YNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~-~~d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~---~g~~li~De~~~~~~   87 (266)
                      .++.+++.++ ..|++++++.+++   .+++++|+++.++|++|.+ ++.+.+.+|++.|+.   +++++|+||+|.+..
T Consensus       145 ~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v-~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~  223 (427)
T PRK07049        145 NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSL-VDVAAVRRVADAIEARQGHRPIIACDNTLLGPV  223 (427)
T ss_pred             hcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcc-cCHHHHHHHHHHhhhcccCCCEEEEECCccccc
Confidence            3455655554 4578888887743   2468999999999999988 566666666555433   799999999985431


Q ss_pred             CcCcccccccCCCCcCeeeeccccc--CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALS--GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIEN  165 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~--~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  165 (266)
                      .. .+  . ..+.+..+.++||.++  +| +++||+++++++.+.+.........+.++..+.++...|+.+.  ...++
T Consensus       224 ~~-~p--l-~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~--~R~~~  296 (427)
T PRK07049        224 FQ-KP--L-EHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLV--LRMER  296 (427)
T ss_pred             cC-Cc--c-ccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHH--HHHHH
Confidence            11 11  1 2344444556999999  58 8999999998888777654333445577888777777765432  22344


Q ss_pred             HHHHHHHHHHHhhcccc------cCCC--ccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCcee
Q psy6547         166 AYKMGEIFRSELSSPAN------KSKA--SFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLVT  226 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~------~~~~--~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~  226 (266)
                      ..+++..+.+.|++ .+      .+..  +..         ..+.|.   ++.|++... .....+|++.|.  ..++-.
T Consensus       297 ~~~~a~~la~~L~~-~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~l~~~~~sl  371 (427)
T PRK07049        297 ANRNARAVAEFLRD-HPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGS---TFSFDIKGG-QAAAFRFLNALQIFKLAVSL  371 (427)
T ss_pred             HHHHHHHHHHHHHh-CCCccEEECCCCCCCCCccHHHHHhhCCCCcc---EEEEEEcCC-HHHHHHHHHcCcccEEcccC
Confidence            46677777777776 32      1211  110         124567   899998641 233556766664  211111


Q ss_pred             --------ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         227 --------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       227 --------~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                              .|.                 ..+.||+|+.+.    +.+.+++.|+++++
T Consensus       372 G~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~  425 (427)
T PRK07049        372 GGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIE----HPDDLIADLAQALD  425 (427)
T ss_pred             CCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHHh
Confidence                    010                 136899996554    55666777777765

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.56  E-value=7.7e-14  Score=122.04  Aligned_cols=225  Identities=13%  Similarity=0.094  Sum_probs=142.6

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.++++++.+|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ..+.. 
T Consensus       120 ~~~G~~~~~vd~~d~e~l~~~i--~~~tklV~le~p~Np~G~v~----dl~~I~~la~~~gi~livD~a~a~~-~~~~~-  191 (391)
T TIGR01328       120 TKFGIQVDFINMAIPEEVKAHI--KDNTKIVYFETPANPTMKLI----DMERVCRDAHSQGVKVIVDNTFATP-MLTNP-  191 (391)
T ss_pred             hcCCeEEEEECCCCHHHHHHhh--ccCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCchh-ccCCc-
Confidence            4467788889988999999999  45789999999999999886    7999999999999999999999521 11221 


Q ss_pred             ccccCCCCcCeeeecccccC-Cchh-hhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYP-ISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~-~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                       . ..+.+..+.+++|.+++ | .+ .|++++++++.+.++..  ........++..++.+...|+.+  ....++..++
T Consensus       192 -~-~~g~Divv~S~sK~lgg~g-~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~n  266 (391)
T TIGR01328       192 -V-ALGVDVVVHSATKYIGGHG-DVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSEN  266 (391)
T ss_pred             -h-hcCCCEEEccccccccCCC-CceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHH
Confidence             1 12333334448899984 4 44 56778888877766532  11112344666665555545432  2245566667


Q ss_pred             HHHHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCce-------
Q psy6547         170 GEIFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV-------  225 (266)
Q Consensus       170 ~~~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~-------  225 (266)
                      ...+.+.|+. .+.      +.+...         ..+.|.   ++.|++... .....+|++.|.  ..+.-       
T Consensus       267 a~~la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl  341 (391)
T TIGR01328       267 AMKVAEYLKS-HPAVEKVYYPGFEDHPGHDIAAKQMRMGGG---MITFELKGG-FAGAKKLLNNLKLIRLAVSLGDAETL  341 (391)
T ss_pred             HHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCc---eEEEEeCCC-HHHHHHHHHhCCcceEecCCCCCccc
Confidence            7777777775 321      222111         224466   899998641 233556666654  11111       


Q ss_pred             -eccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         226 -TKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       226 -~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       ..|.                 ..+.+|+|..+.    |.+.+++.|+++++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~  390 (391)
T TIGR01328       342 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGLE----DADDLIADLKQALDA  390 (391)
T ss_pred             CcCCCccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHhh
Confidence             0010                 136899995544    567778888877764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.56  E-value=4.9e-14  Score=121.97  Aligned_cols=193  Identities=12%  Similarity=0.097  Sum_probs=128.8

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+  .+++++++++.+++++|.+.    ++++|.++|+++|+++++|++|+ ++.  
T Consensus       111 ~G~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~~~~~~n~tG~~~----~~~~I~~l~~~~~~~~ivD~a~~-~g~--  181 (353)
T TIGR03235       111 NGFTVTYLPVDESGRIDVDELADAI--RPDTLLVSIMHVNNETGSIQ----PIREIAEVLEAHEAFFHVDAAQV-VGK--  181 (353)
T ss_pred             cCCEEEEEccCCCCcCCHHHHHHhC--CCCCEEEEEEcccCCceecc----CHHHHHHHHHHcCCEEEEEchhh-cCC--
Confidence            4567777764     3789999998  34679999999999999986    78999999999999999999994 322  


Q ss_pred             cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhc--cCCCC-------CCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGT--LVPGT-------HGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ..+..+.+  .+|++++|  |++++  ..+|+++.+++....  +.+..       .....+.+.....+..++++.+..
T Consensus       182 ~~~~~~~~--~~D~~~~s~~K~~gp--~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~  257 (353)
T TIGR03235       182 ITVDLSAD--RIDLISCSGHKIYGP--KGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARR  257 (353)
T ss_pred             cccccccc--CCCEEEeehhhcCCC--CceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHh
Confidence            12233333  45666655  98652  347888888764322  22110       112334566667777778877653


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                        ++..++++++.+++++.|++ .+...+.........   ++.|.++   +.+.+++.+.|.+ +|.++++
T Consensus       258 ~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~---i~~~~~~---~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       258 NAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPH---ILNFSID---GVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCC---EEEEEeC---CcCHHHHHHHHhC-CeEEEch
Confidence              45778889999999999887 553322210111223   5666554   3567888888865 8888865

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>KOG2862|consensus

Probab=99.55  E-value=1.4e-12  Score=106.01  Aligned_cols=220  Identities=15%  Similarity=0.124  Sum_probs=162.7

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      .++++++.+.++ +++++++....+.+|...   +.++...++|++|++++++|-+-+ +  .|..|.++.||++.-+.-
T Consensus       130 ~le~i~~~lsqh-~p~~vfv~hgdsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgVDvaytg  202 (385)
T KOG2862|consen  130 PLEEITEKLSQH-KPKAVFVTHGDSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGVDVAYTG  202 (385)
T ss_pred             cHHHHHHHHHhc-CCceEEEEecCccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcccEEEec
Confidence            589999999877 689999999998899875   348888999999999999998885 3  357889999998887777


Q ss_pred             ecccccCCchhhhhheecHHhhhccCCCCC-----------------------CCCCCCcHHHHHHHHHHHHHHhhc---
Q psy6547         107 LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILEE---  160 (266)
Q Consensus       107 ~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~~l~~~~~~---  160 (266)
                      .-|++++. -.++.+..+++..+.++..+.                       ...++++.-..=+..++|..+-++   
T Consensus       203 SQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~  281 (385)
T KOG2862|consen  203 SQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLE  281 (385)
T ss_pred             chhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            88999954 446778888888777764311                       111233434445566777766554   


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceec----cCCCCEE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTK----PISNNII  234 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~----~~~~~~i  234 (266)
                      +.+++-++..++++..|++ ++... ...+......   ...+..+.  +.|..+++.++..+ ++.+.    +..+..+
T Consensus       282 ~~~~rH~e~s~~l~~~l~~-~GLq~fv~~e~~rlpt---vttv~vp~--gvDw~dVv~~~~~~~~vei~gglg~~~gKv~  355 (385)
T KOG2862|consen  282 NSWRRHREMSKWLKLSLEA-LGLQLFVVDEELRLPT---VTTVKVPY--GVDWKDVVAYAMSHYVVEIGGGLGPTVGKVF  355 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCccceecChhhccCc---ceeeecCC--CCCHHHHHHHHHHhcCEEeccccCCCcccEE
Confidence            5677778899999999998 66422 2222344455   67777777  78999999999988 44443    3356889


Q ss_pred             EEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPA-LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       235 R~~~~-~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ||.+. .+-+.+.++..++.|..++++
T Consensus       356 RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  356 RIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             EEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            99764 455788899999999888865

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.55  E-value=2.9e-13  Score=118.17  Aligned_cols=204  Identities=11%  Similarity=-0.013  Sum_probs=139.2

Q ss_pred             EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee--ecccccCCchhh
Q psy6547          41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI  118 (266)
Q Consensus        41 ~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~  118 (266)
                      +++|.+.++.+.+|.+.    ++++|.+  +++|+++++|-+++ +|  +..+.++  .+  |++.  ..|+|++. ..+
T Consensus       137 ~~~V~~~h~~t~tG~~~----pi~~I~~--~~~g~~~vVDa~qs-~G--~~pidv~--~i--D~~~~s~~K~l~~P-~G~  202 (378)
T PRK03080        137 DRDVVFTWNGTTTGVRV----PVARWIG--ADREGLTICDATSA-AF--ALPLDWS--KL--DVYTFSWQKVLGGE-GGH  202 (378)
T ss_pred             CCCEEEEecCCccceec----cchhhcc--ccCCCeEEEecccc-cc--cCCCCHH--HC--cEEEEehhhhCCCC-Cce
Confidence            45688888999999987    7889988  88999999999994 32  1233333  33  5555  55999865 568


Q ss_pred             hhheecHHhhhccCCCC----------------------CCCC-CCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHH
Q psy6547         119 SAVLADDEVMGTLVPGT----------------------HGST-YGGNPLACKLAMTALDVILEE----NMIENAYKMGE  171 (266)
Q Consensus       119 g~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~  171 (266)
                      |++..+++..+.+.+..                      ...+ ++++..+..+..++|+.+.+.    ++.++.+++.+
T Consensus       203 g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~  282 (378)
T PRK03080        203 GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANAS  282 (378)
T ss_pred             EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999998876655321                      0111 234444555567788887664    35677888888


Q ss_pred             HHHHHhhccccc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCCCCHH
Q psy6547         172 IFRSELSSPANK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQ  245 (266)
Q Consensus       172 ~l~~~l~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~~t~~  245 (266)
                      ++++.+++ ++. ..+.... ...+.   ++.|.+++.+.....++..+|.++|+.++.++    .+.+|+|++..++++
T Consensus       283 ~l~~~l~~-~~~~~~~~~~~~~~s~~---i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~  358 (378)
T PRK03080        283 VLYDWAEK-TPWATPLVADPATRSNT---SVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPA  358 (378)
T ss_pred             HHHHHHHh-CCCcccccCCccccCcc---EEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHH
Confidence            99998887 553 2221101 12234   67777654111123457777888898887532    478999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy6547         246 ELREGLDIIINTINTMA  262 (266)
Q Consensus       246 ~i~~~~~~l~~~~~~~~  262 (266)
                      |++++++.|++++++..
T Consensus       359 di~~l~~al~~~~~~~~  375 (378)
T PRK03080        359 DVEALTPWLDWAFERLK  375 (378)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999887643

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.55  E-value=1e-13  Score=120.59  Aligned_cols=223  Identities=12%  Similarity=0.002  Sum_probs=134.4

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      ++.++..++..+.+++++++  .+++++|++|.+.|++|.+.    ++++|+++|+++|+++|+|++|+ .+..+.+   
T Consensus       113 ~gi~v~~~d~~~~e~l~~~i--~~~tklV~lesp~Np~g~~~----dl~~I~~la~~~g~~livD~t~a-~g~~~~p---  182 (377)
T TIGR01324       113 MGVDITYYDPLIGEDIATLI--QPNTKVLFLEAPSSITFEIQ----DIPAIAKAARNPGIVIMIDNTWA-AGLLFKP---  182 (377)
T ss_pred             cCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCCc-cccccCc---
Confidence            45667777666668888888  55799999999999887775    99999999999999999999994 2222221   


Q ss_pred             ccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      ..+|.+..+.+++|+++|  + .-.|+++++++..+.+...........+|..+......++.+.-  ..++..+++..+
T Consensus       183 l~~gaDivv~S~tK~l~G~~d-~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~--R~~~~~~~a~~l  259 (377)
T TIGR01324       183 LEHGVDISIQAGTKYLVGHSD-IMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGV--RLKQHQESSLAI  259 (377)
T ss_pred             cccCceEEEecCceeccCCCC-ceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHH
Confidence            123444444447899984  3 34677888877766554222222233455555445444443221  233333444445


Q ss_pred             HHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------
Q psy6547         174 RSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---------  229 (266)
Q Consensus       174 ~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------  229 (266)
                      .+.|++ -+      .+.+...         ..+.|.   ++.|.+...+.....+|++.|.-.++.+..+         
T Consensus       260 a~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~---~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~  335 (377)
T TIGR01324       260 AKWLSE-QPEVARVLHPALPSCPGHEFWKRDFSGSSG---LFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCN  335 (377)
T ss_pred             HHHHHh-CCCcCEEECCCCCCCccHHHHHHhccCCCc---eEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecC
Confidence            555554 11      1222110         124567   8999996411334667888776543332111         


Q ss_pred             --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 --------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                    .++.+|+|..+.    |.+.+++.|.++++
T Consensus       336 ~~~~~~~~~~~~~~~~~liR~svGlE----~~~dl~~dl~~al~  375 (377)
T TIGR01324       336 QPELGHRPNIKRNLEGPLIRVHIGLE----NVDDLKADLKAGFE  375 (377)
T ss_pred             CCCCCHHHHHhccCCCCEEEEEeCCC----CHHHHHHHHHHHHh
Confidence                          225789996655    45566667766665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.55  E-value=3.3e-13  Score=118.56  Aligned_cols=154  Identities=13%  Similarity=0.067  Sum_probs=107.2

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ..+...
T Consensus       126 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklV~le~p~NPtG~~~----di~~I~~la~~~gi~lIvD~a~a~~-~~~~~l  198 (403)
T PRK07503        126 GEFGVTVRHVDLTDPAALKAAI--SDKTRMVYFETPANPNMRLV----DIAAVAEIAHGAGAKVVVDNTYCTP-YLQRPL  198 (403)
T ss_pred             hhCCEEEEEeCCCCHHHHHHhc--CccCcEEEEeCCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence            4578888899888999999999  44789999998899999887    8999999999999999999999532 122221


Q ss_pred             ccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                         ..+.+..+.+++|.+++ |-.+.|+++.++++.+.++..  ........+++.++.+...|+.+..  ..++..++.
T Consensus       199 ---~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na  273 (403)
T PRK07503        199 ---ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASA  273 (403)
T ss_pred             ---hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHH
Confidence               12334444458899995 315678888888887776522  2233456677777776666654422  233334556


Q ss_pred             HHHHHHhhc
Q psy6547         171 EIFRSELSS  179 (266)
Q Consensus       171 ~~l~~~l~~  179 (266)
                      ..+.+.|++
T Consensus       274 ~~~a~~L~~  282 (403)
T PRK07503        274 QAVAEWLAR  282 (403)
T ss_pred             HHHHHHHHh
Confidence            666666664

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.55  E-value=5.9e-13  Score=115.90  Aligned_cols=223  Identities=11%  Similarity=0.094  Sum_probs=143.0

Q ss_pred             CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      .-.+.+++.++.+      |++++++.+  .+++++|+.+  + ++|...    ++++|.++|++||++||+|++|+...
T Consensus        89 ~~~G~~~v~vd~d~~~~~~d~~~le~~i--~~~tk~Iip~--~-~~G~~~----d~~~I~~la~~~~i~vIeDaa~~~g~  159 (376)
T TIGR02379        89 VLRGAKIVFVDIRPDTMNIDETLIESAI--THRTKAIVPV--H-YAGVAC----DMDTIMALANKHQLFVIEDAAQGVMS  159 (376)
T ss_pred             HHcCCEEEEEecCCCcCCCCHHHHHHhc--CcCceEEEEe--C-CCCCcc----CHHHHHHHHHHCCCEEEEECccccCC
Confidence            3456677777643      688899988  4467888643  2 356555    78999999999999999999995321


Q ss_pred             CcCcccccccCCCCcCeeeec----ccccCCchhhhhheec-HHhhhccCCCC---------------------CCCCCC
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLAD-DEVMGTLVPGT---------------------HGSTYG  141 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~-~~~~~~~~~~~---------------------~~~~~~  141 (266)
                      ..    .-...+...|+.+||    |.+++| .+.|+++.+ +++.+.++...                     .+..+-
T Consensus       160 ~~----~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~  234 (376)
T TIGR02379       160 TY----KGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYL  234 (376)
T ss_pred             cc----CCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCC
Confidence            11    111224445788888    999977 678987765 56666554211                     123334


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCC---C---cccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK---A---SFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      .+.+.++.+...|+.++  +..++.+++.+++.+.|.. +....   +   +........   ++++.++.  ..+.+++
T Consensus       235 ~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~--~~~r~~l  306 (376)
T TIGR02379       235 PSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAH---MFYIKLKD--EDDRNEL  306 (376)
T ss_pred             ccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeE---EEEEEECC--cCCHHHH
Confidence            45556666666665543  3556666677778888776 33111   1   110111112   44555544  3467899


Q ss_pred             HHHHHHCCceeccCC--------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPIS--------------------------NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~--------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .+.|.++||.+++..                          ...+.+-++...++++++..++.|++++
T Consensus       307 ~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       307 IKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             HHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999876210                          1346666677899999999999998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.55  E-value=4.2e-14  Score=123.20  Aligned_cols=224  Identities=13%  Similarity=0.102  Sum_probs=138.6

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.++++++..|++++++++  ++++++|+++.+.|++|.+.    ++++|.++|+++|+++|+|++|... .....  
T Consensus       108 ~~G~~v~~vd~~d~~~le~~i--~~~tklv~le~psnptg~v~----dl~~I~~la~~~g~~vivD~a~~~~-~~~~~--  178 (378)
T TIGR01329       108 RSGVVVVHVDTTDLDKVKAAL--GPKTKLVLLESPTNPLQKIV----DIRKISEMAHAQNALVVVDNTMMSP-LLCNP--  178 (378)
T ss_pred             HcCcEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCeee----cHHHHHHHHHHcCCEEEEECCCccc-ccCCh--
Confidence            368889999988999999999  45789999999999999887    8999999999999999999998321 11111  


Q ss_pred             cccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      . .++.+..+.+.+|+++|+ -...|+++++ +.+.+.+...........++..+..+...++.+  ....++-.++...
T Consensus       179 l-~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~  255 (378)
T TIGR01329       179 L-ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARA  255 (378)
T ss_pred             h-hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHH
Confidence            1 234444455588999853 0347888774 444455543322223334555444333333222  1123333344444


Q ss_pred             HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------
Q psy6547         173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------  229 (266)
Q Consensus       173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------  229 (266)
                      +.+.|++ -.      .+.+..         ...+.|.   ++.|.+..  ...+.+|+..|...++.++.+        
T Consensus       256 la~~L~~-~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~---~~sf~~~~--~~~~~~~~~~L~~~~i~~s~G~~~sl~~~  329 (378)
T TIGR01329       256 IAMFLST-HPRVKKVRYAGLPSHPGFHLHFSQAKGAGS---VLSFETGS--VALSKRLVEATKLFSITVSFGSVNSLISM  329 (378)
T ss_pred             HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCcce---EEEEEECC--HHHHHHHHHhCcCcccccCCCCCCceeeC
Confidence            4444443 11      111111         0123345   89999943  233778999996666555432        


Q ss_pred             -------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -------------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                         ..+.+|+|..+.    +.+.+++.|++++++
T Consensus       330 p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~  375 (378)
T TIGR01329       330 PCFMSHASIPAEVREERGLPEDLVRLSVGIE----DVDDLISDLDIAFVT  375 (378)
T ss_pred             CCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence                               136899995544    566677777777764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.54  E-value=8.7e-14  Score=115.72  Aligned_cols=218  Identities=16%  Similarity=0.173  Sum_probs=144.2

Q ss_pred             CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccccccCCC
Q psy6547          27 DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDV  100 (266)
Q Consensus        27 d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~~~~~~~  100 (266)
                      ++++++..++.    +..+.+++++..++.+|.+ +|.+.+++|.++|+++|++|.+|.+--.  .-..|  .+...+..
T Consensus       113 t~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtV-y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~  189 (342)
T COG2008         113 TPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTV-YPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKS  189 (342)
T ss_pred             CHHHHHHhhcCCCcccCCCceEEEeeccCCCcee-cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHh
Confidence            79999998864    2366777777777777877 9999999999999999999999987722  11122  23333444


Q ss_pred             CcCeee--ecccccCCchhhhh-heecHHhhhccCC--CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy6547         101 RPDIVI--LGKALSGGLYPISA-VLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  175 (266)
Q Consensus       101 ~~d~~~--~sK~~~~g~~~~g~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  175 (266)
                      ..|.++  +||.++   +++|. ++++.++.+.++.  ...++-+..+.+..++.+..|+.---.....|-.+.+++|.+
T Consensus       190 ~~D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~  266 (342)
T COG2008         190 YVDSVSFCLTKGGG---APVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAE  266 (342)
T ss_pred             hCCEEEEecccCCc---ceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            566666  556554   56765 4568888877653  245666777777777777777521111122333334777777


Q ss_pred             HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      .+.. .  +++....+...+   ++.+.+++. ..+.......+.+.|+...+.+ ..+||.++...+++|+++++..++
T Consensus       267 ~~~~-~--~G~~~~~~~~tN---~vf~~l~~~-~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~  338 (342)
T COG2008         267 GLEA-K--PGVKLAFPVETN---MVFVRLPES-AIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIK  338 (342)
T ss_pred             hhhh-c--CCceeccCCccc---EEEEECChH-HHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHH
Confidence            7775 2  223321223444   888888762 1233344445556666666553 689999999999999999999988


Q ss_pred             HHH
Q psy6547         256 NTI  258 (266)
Q Consensus       256 ~~~  258 (266)
                      +.+
T Consensus       339 ~~~  341 (342)
T COG2008         339 ALL  341 (342)
T ss_pred             Hhh
Confidence            764

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.53  E-value=5.2e-13  Score=116.56  Aligned_cols=222  Identities=15%  Similarity=0.094  Sum_probs=138.2

Q ss_pred             CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      .++..++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+||+|.... ...+  . .
T Consensus       117 i~v~~vd~~d~e~l~~~l--~~~tklV~l~sP~NPtG~v~----di~~I~~ia~~~g~~vivDeay~~~~-~~~p--l-~  186 (386)
T PRK08045        117 YRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVV----DIAKICHLAREAGAVSVVDNTFLSPA-LQNP--L-A  186 (386)
T ss_pred             eEEEEeCCCCHHHHHHhc--ccCCeEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCCccc-cCCc--h-h
Confidence            356667767899999999  44689999999999999886    78999999999999999999995331 1111  1 2


Q ss_pred             CCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  174 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~  174 (266)
                      ++.+..+.+++|+++|  + ...|++++ ++++.+.+...........+++.+..+..+|+-+..  ..++..+++..+.
T Consensus       187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~na~~la  263 (386)
T PRK08045        187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIV  263 (386)
T ss_pred             hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHHHHHHHH
Confidence            3444445559999984  4 45777766 566666554333344455777777777776654322  2344444555555


Q ss_pred             HHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------cC
Q psy6547         175 SELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----------PI  229 (266)
Q Consensus       175 ~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~  229 (266)
                      +.|+. -+      .+.+...         ..+.|.   ++.|.+.. +.....+|++.|.=-.+.+.          |.
T Consensus       264 ~~L~~-~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~---~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~  338 (386)
T PRK08045        264 KYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGA---MLSFELDG-DEQTLRRFLGGLSLFTLAESLGGVESLISHAA  338 (386)
T ss_pred             HHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCc---eEEEEecC-cHHHHHHHHHhccceeEeccCCCCceeEeCCC
Confidence            55554 21      1222211         235577   89999964 12234567766652111111          10


Q ss_pred             -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                       ..+.+|+|..+.    +.+.+++.|+++++..
T Consensus       339 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~  383 (386)
T PRK08045        339 TMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA  383 (386)
T ss_pred             CcccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHHh
Confidence                             247899996655    4566666777666543

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.53  E-value=3.4e-13  Score=117.58  Aligned_cols=220  Identities=15%  Similarity=0.099  Sum_probs=138.1

Q ss_pred             CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      .++..++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|..+.. ..+  . .
T Consensus       116 ~~v~~~d~~d~~~l~~ai--~~~tklV~l~~p~NPtG~~~----dl~~I~~la~~~g~~vvvD~a~~~~~~-~~p--l-~  185 (382)
T TIGR02080       116 FRVLFVDQGDEQALRAAL--AQKPKLVLIETPSNPLLRVV----DIAKICHLAKAVGAVVVVDNTFLSPAL-QNP--L-A  185 (382)
T ss_pred             eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCccccc-CCc--h-h
Confidence            456666667899999999  44689999999999999886    789999999999999999999953211 111  1 1


Q ss_pred             CCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  174 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~  174 (266)
                      .+.+..+.+++|.++|  + .+.|+++. ++++.+.+...........+++.+..++..++.+..  ..++..+++..+.
T Consensus       186 ~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a  262 (382)
T TIGR02080       186 LGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIV  262 (382)
T ss_pred             hCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHH
Confidence            2444444559999973  5 57888766 566666665443444556778877777666654332  2344445666666


Q ss_pred             HHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------cC
Q psy6547         175 SELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----------PI  229 (266)
Q Consensus       175 ~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~  229 (266)
                      +.|+. -+      .+.+...         ..+.|.   ++.|++... .....+|++.|.=-.+.+.          |.
T Consensus       263 ~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~  337 (382)
T TIGR02080       263 EYLQT-QPLVKKIYYPGLPDHPGHEIAARQQKGFGA---MLSFELKGG-EQTVRRFLGGLSLFTLAESLGGVESLIAHPA  337 (382)
T ss_pred             HHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEecCc-HHHHHHHHHcCCcceEeccCCCCcceeECCC
Confidence            66664 21      1222211         235577   999999641 1234566666542111111          10


Q ss_pred             -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                       ..+.||+|..+.    +.+.+++.|+++++
T Consensus       338 ~~~~~~~~~~~~~~~gi~~~liRlsvGlE----~~~dl~~dl~~al~  380 (382)
T TIGR02080       338 TMTHAAMGPEARAEAGISDTLLRLSVGLE----DADDLIADLEQGLR  380 (382)
T ss_pred             ccCcccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence                             236899995554    45666777777665

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.52  E-value=7.5e-13  Score=114.95  Aligned_cols=215  Identities=14%  Similarity=0.060  Sum_probs=132.0

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++.++...   .+  .+++++++++.++|++|.+.    ++++|.++|+++|+++|+|++|...  .|.. .
T Consensus       112 ~~G~~v~~v~~~~~~~---~~--~~~t~lV~le~p~NPtg~v~----di~~I~~~a~~~g~~lvVD~t~~~~--~~~~-p  179 (366)
T PRK07582        112 PLGVTVREAPTAGMAE---AA--LAGADLVLAETPSNPGLDVC----DLAALAAAAHAAGALLVVDNTTATP--LGQR-P  179 (366)
T ss_pred             cCeEEEEEECCCChHH---Hh--ccCceEEEEECCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCCCCc--cccC-c
Confidence            3577888888765432   22  34689999998888888765    8999999999999999999999421  1221 1


Q ss_pred             cccCCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+ ++.+..+.+++|+++|  | .++||+++ ++++.+.+...........+++.+..+...++.+  +-..++..+++.
T Consensus       180 ~~-~g~Divv~S~sK~l~G~~g-~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~  255 (366)
T PRK07582        180 LE-LGADLVVASDTKALTGHSD-LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL--GLRFARQCANAL  255 (366)
T ss_pred             hh-cCCcEEEecccccccCCCC-eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH--HHHHHHHHHHHH
Confidence            11 3434444448999974  6 67899887 4666666654333333445677766665555432  223355566777


Q ss_pred             HHHHHhhccccc------CCCcccE---------EecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-c-------
Q psy6547         172 IFRSELSSPANK------SKASFKL---------SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-P-------  228 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~-------  228 (266)
                      .+.+.|++ .+.      +.++..+         .+.|.   ++.|++++     .++..+.+...+++.. +       
T Consensus       256 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg---~~s~~~~~-----~~~~~~~~~~l~~~~~~~s~G~~~s  326 (366)
T PRK07582        256 AVAELLAG-HPAVRGVRYPGLPGDPAHEVAARQMRRFGG---LVSFELAD-----AAAAERFVAASRLVVAATSFGGVHT  326 (366)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHhhCCCCcc---eEEEEeCC-----HHHHHHHHHhCCcceecccCCCccc
Confidence            77777776 331      2222211         13566   89999854     3334444444454432 0       


Q ss_pred             -----------CCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         229 -----------ISNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       229 -----------~~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                                 ...+.||+|+++..+++.++.+.++|
T Consensus       327 l~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al  363 (366)
T PRK07582        327 SADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERAL  363 (366)
T ss_pred             hhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence                       12368999988876655555544444

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.52  E-value=3.8e-13  Score=117.61  Aligned_cols=225  Identities=13%  Similarity=0.151  Sum_probs=137.0

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ..+.+ 
T Consensus       122 ~~~gi~~~~~d~~d~e~l~~~i--~~~tklV~ie~p~NPtg~~~----dl~~I~~la~~~gi~lIvD~a~a~~-~~~~p-  193 (388)
T PRK07811        122 TRWGVEYTPVDLSDLDAVRAAI--TPRTKLIWVETPTNPLLSIT----DIAALAELAHDAGAKVVVDNTFASP-YLQQP-  193 (388)
T ss_pred             cCCCeEEEEeCCCCHHHHHHhc--CcCCeEEEEECCCCCcceec----CHHHHHHHHHHcCCEEEEECCCCcc-ccCCc-
Confidence            3456778888888999999999  44789999998888888776    9999999999999999999999532 11222 


Q ss_pred             ccccCCCCcCeeeecccccC-Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       . ..+.+..+.+++|+++| |-.+.|+++++ +++.+.+...........++..+..+...|+.+  +...++..++..
T Consensus       194 -~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~  269 (388)
T PRK07811        194 -L-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAE  269 (388)
T ss_pred             -h-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHH
Confidence             1 12334444558899985 21356887774 555554443222223334555554444444432  223455556777


Q ss_pred             HHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHH--CCc--------ee
Q psy6547         172 IFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKD--AGL--------VT  226 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi--------~~  226 (266)
                      .+.+.|++ .+.      +....         ...+.|.   ++.|++... .....+|.+.|.=  .+.        +.
T Consensus       270 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~  344 (388)
T PRK07811        270 AVAEFLAG-HPEVSTVLYPGLPSHPGHEVAARQMRGFGG---MVSVRLAGG-EEAARDFCARTKVFTLAESLGGVESLIE  344 (388)
T ss_pred             HHHHHHHh-CCCeeEEECCCCCCCchHHHHHHhcCCCCc---eEEEEeCCC-HHHHHHHHHhCCcceeeccCCCCcceEe
Confidence            77777775 321      12211         0224577   999999641 2345566666542  111        11


Q ss_pred             ccC--------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         227 KPI--------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       227 ~~~--------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .|.              ..+.||+|+.+.    |.+.+++.|.++++
T Consensus       345 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~  387 (388)
T PRK07811        345 HPSAMTHASTAGSQLEVPDDLVRLSVGIE----DVADLLADLEQALG  387 (388)
T ss_pred             CCcccCcccCCHhhcCCCCCEEEEEeCCC----CHHHHHHHHHHHhh
Confidence            110              146899996655    45556666666653

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.52  E-value=8.8e-13  Score=115.05  Aligned_cols=225  Identities=16%  Similarity=0.166  Sum_probs=140.6

Q ss_pred             CCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      .-.+.+++.++.      .|++++++.+  .+++++|++.+   ++|...    ++++|.++|+++|++||+|++|+...
T Consensus        89 ~~~G~~~v~~d~d~~~~~~d~~~le~~i--~~~tk~i~~~~---~~G~~~----~~~~i~~la~~~~i~vIeD~a~a~g~  159 (375)
T PRK11706         89 VLRGAKIVFVDIRPDTMNIDETLIEAAI--TPKTRAIVPVH---YAGVAC----EMDTIMALAKKHNLFVVEDAAQGVMS  159 (375)
T ss_pred             HHcCCEEEEEecCCCcCCcCHHHHHHhc--CCCCeEEEEeC---CCCCcc----CHHHHHHHHHHcCCEEEEECcccccc
Confidence            334566666652      3789999999  44678888653   356554    78999999999999999999995332


Q ss_pred             C-cCcccccccCCCCcCeeeec----ccccCCchhhhhheecHHhhhccCCCC---------------------CCCCCC
Q psy6547          88 R-TGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYG  141 (266)
Q Consensus        88 ~-~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~  141 (266)
                      . .|..     .+-..|+.+||    |.+++| .+.+++..++++.+.++...                     .+.++-
T Consensus       160 ~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~  233 (375)
T PRK11706        160 TYKGRA-----LGTIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYL  233 (375)
T ss_pred             ccCCee-----eecCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccC
Confidence            1 1211     12234777777    999877 56666776777665433111                     112233


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc---CCCcccEEecCccceeeEEEEeeCccchHHHHHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK---SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIK  218 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  218 (266)
                      .+.+.++.+...++.+  +...++.+++.+.+++.|.. +..   ..++....+.....+++++.+++  +.+..++.+.
T Consensus       234 ~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~l~~~  308 (375)
T PRK11706        234 PSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRD--LEDRSALINF  308 (375)
T ss_pred             cCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECC--cCCHHHHHHH
Confidence            3445555555555543  44566777778888888877 431   11111011100111256666654  4568899999


Q ss_pred             HHHCCceeccC--------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         219 MKDAGLVTKPI--------------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       219 l~~~gi~~~~~--------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |.++||.++..                          ..+.+.+-++...+++|++..++.|.+++
T Consensus       309 L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        309 LKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             HHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence            99999986421                          11335555566789999999999998764

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.52  E-value=5.1e-13  Score=116.96  Aligned_cols=228  Identities=12%  Similarity=0.064  Sum_probs=135.3

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++..+.+++++.+  .+++++|+++.+.|+++..    .++++|.++|+++|+++|+|++|..    |..+
T Consensus       126 ~~~Gi~v~~vd~~~~~~l~~~i--~~~tklV~le~p~Np~~~~----~di~~I~~ia~~~gi~livD~a~a~----~~~~  195 (394)
T PRK07050        126 RDFGITVRFYDPLIGAGIADLI--QPNTRLIWLEAPGSVTMEV----PDVPAITAAARARGVVTAIDNTYSA----GLAF  195 (394)
T ss_pred             HhcCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccH----hhHHHHHHHHHHcCCEEEEECCccc----cccc
Confidence            3457778888776778899998  4578999999888876554    4999999999999999999999942    1111


Q ss_pred             ccccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .-...|.+..+.+++|.++||. .+.|++++ ++++.+.++........+.++..+..+...++.+..  ..++..+++.
T Consensus       196 ~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~~--Rl~~~~~~a~  273 (394)
T PRK07050        196 KPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQV--RLAAHDRSAL  273 (394)
T ss_pred             CHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHHH--HHHHHHHHHH
Confidence            1111243344556999998540 35777665 667766665332322334455544333332322211  2333334444


Q ss_pred             HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeC-ccchHHHHHHHHHHCCceeccC------
Q psy6547         172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVS-AILEVYDVCIKMKDAGLVTKPI------  229 (266)
Q Consensus       172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~------  229 (266)
                      .+.+.|++ .+      .+.+..         ...+.|.   ++.|++... +..+..+|++.|...++.+..+      
T Consensus       274 ~la~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~---~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~  349 (394)
T PRK07050        274 EVAEWLKA-RPEIATVLHPALPDCPGHAFWMRDFTGAGG---LFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLA  349 (394)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCce---EEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceE
Confidence            55555554 21      111111         0124466   888888642 1345778888887665533221      


Q ss_pred             ---------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ---------------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ---------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                     .++.||+|+.+.    +.+.+++.|.++++..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~iR~svGlE----~~~dl~~dl~~al~~~  392 (394)
T PRK07050        350 MPYDVASMRTAKWPHRGTLVRLYIGLE----DEADLIADLEQALEAA  392 (394)
T ss_pred             eeCcccccchhhcCCCCCEEEEEeCcC----CHHHHHHHHHHHHHHh
Confidence                           126799996655    4555666666666543

>PLN02509 cystathionine beta-lyase

Probab=99.51  E-value=4.7e-13  Score=118.68  Aligned_cols=223  Identities=11%  Similarity=0.120  Sum_probs=136.9

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ..+..++.++..|++++++.+  .+++++|+++.+.|++|.+.    ++++|.++|++||+++|+|++|.. +..+..  
T Consensus       194 ~~G~~v~~vd~~d~e~l~~ai--~~~TklV~lesPsNPtG~i~----Dl~~I~~lAk~~g~~lIVD~A~a~-~~~~~p--  264 (464)
T PLN02509        194 RSGVVVKRVNTTNLDEVAAAI--GPQTKLVWLESPTNPRQQIS----DIRKIAEMAHAQGALVLVDNSIMS-PVLSRP--  264 (464)
T ss_pred             HCCeEEEEeCCCCHHHHHHhC--CcCCeEEEEECCCCCCCCHH----HHHHHHHHHHHcCCEEEEECCccc-cccCCh--
Confidence            346778888888999999999  55789999999999999876    999999999999999999999832 112221  


Q ss_pred             cccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      . ..+.+..+.+++|+++|. -.-.|++..+ +.+.+.+...........++..+..+...|+.+  +...++..+++..
T Consensus       265 l-~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL--~~R~~r~~~nA~~  341 (464)
T PLN02509        265 L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM--ALRIEKQQENARK  341 (464)
T ss_pred             h-hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH--HHHHHHHHHHHHH
Confidence            1 123344444588999852 0124555553 333333221111112234666777777666654  2345666667777


Q ss_pred             HHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------
Q psy6547         173 FRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----------  227 (266)
Q Consensus       173 l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------  227 (266)
                      +.+.|++ .+      .+.++..         ..+.|.   ++.|.+..  ...+..|++.|.=-.+.+.          
T Consensus       342 la~~L~~-~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg---~~sf~~~~--~~~~~~f~~~l~l~~~a~slG~~~SLi~~  415 (464)
T PLN02509        342 IAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGS---VFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISM  415 (464)
T ss_pred             HHHHHhc-CCCccEEECCCCCCCccHHHHHHhCCCCce---EEEEEeCC--HHHHHHHHHcCCcceEcccCCCCCceeeC
Confidence            7777775 22      1222211         124466   89998843  3345566666541111111          


Q ss_pred             cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         228 PI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       228 ~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      |.                 ..+.||+|..+.    +.+.+++.|+++++
T Consensus       416 p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE----~~~DLi~Dl~~Al~  460 (464)
T PLN02509        416 PCFMSHASIPAEVREARGLTEDLVRISAGIE----DVDDLISDLDIAFR  460 (464)
T ss_pred             CcccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHc
Confidence            10                 247899996554    55666777777664

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.51  E-value=2.7e-13  Score=117.40  Aligned_cols=208  Identities=17%  Similarity=0.161  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      .|++++++.+  .+++++|+++.+.|++|.+.    ++++|+++|+++|+++|+|++|..- ..+.     ..+...|++
T Consensus       124 ~d~~~l~~~i--~~~TklV~lesP~NPtg~~~----di~~I~~la~~~gi~vvvD~t~~~~-~~~~-----pl~~gaDiv  191 (364)
T PRK07269        124 NTEEELIAAI--EEDTDIVYIETPTNPLMVEF----DIEKVAKLAHAKGAKVIVDNTFYSP-IYQR-----PIELGADIV  191 (364)
T ss_pred             CCHHHHHHhc--CcCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCC-----chhhCCcEE
Confidence            4799999999  45789999999999998887    9999999999999999999997321 1111     123345555


Q ss_pred             e--ecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Q psy6547         106 I--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       106 ~--~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      +  ++|.++|.. .-.|++++ ++++.+.+...........+++.+..+...|+.+  +...++..++...+.+.|+. -
T Consensus       192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L~~-~  268 (364)
T PRK07269        192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFLKK-S  268 (364)
T ss_pred             EecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHh-C
Confidence            5  779998520 12466666 4566565542221222456777777776666543  22445556666677776665 2


Q ss_pred             ccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHC----------CceeccC-----------------CCCE
Q psy6547         182 NKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA----------GLVTKPI-----------------SNNI  233 (266)
Q Consensus       182 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------gi~~~~~-----------------~~~~  233 (266)
                      +  .+. ...++.|.   ++.|.+..  .....+|.+.+.-.          +++..|.                 ..+.
T Consensus       269 p--~v~~v~ypg~gg---~~sf~~~~--~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~l  341 (364)
T PRK07269        269 P--AVKEVLYTGKGG---MISFKVAD--ETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDL  341 (364)
T ss_pred             C--CccEEeCCCcCc---EEEEEECC--HHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCe
Confidence            2  221 11245677   89999864  33445566555321          2233231                 2468


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +|+|..+.    +.+.+++.|+++++
T Consensus       342 iRlsvGlE----~~~dli~dl~~al~  363 (364)
T PRK07269        342 LRLSIGIE----DARDLIADLKQALE  363 (364)
T ss_pred             EEEEeccC----CHHHHHHHHHHHhc
Confidence            99996554    45666777776653

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.51  E-value=8.2e-13  Score=114.36  Aligned_cols=208  Identities=13%  Similarity=0.067  Sum_probs=145.7

Q ss_pred             HHHHH-HHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeee
Q psy6547          29 DALEA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL  107 (266)
Q Consensus        29 ~~l~~-~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~  107 (266)
                      .++++ .+  ++++++|.+.++.+++|... +  ++++|      +|+++++|-+++ ++  +.....+.++  .-+.+.
T Consensus       131 ~~~~~~~l--~~~~~~V~~th~eTstGv~~-~--~i~~i------~g~l~vVDavss-~g--~~~idv~~~d--~~~~ss  194 (360)
T PRK05355        131 PPLDEWQL--SDDAAYVHYTSNETIDGTEF-H--ELPDT------GDVPLVADMSSD-IL--SRPIDVSKFG--LIYAGA  194 (360)
T ss_pred             CChhhccC--CCCCCEEEEccCCCcceEec-C--ccccc------CCCcEEEEcCcc-cc--CccCCHHHcc--EEEEec
Confidence            34444 56  33679999999999999874 2  34444      899999999995 32  2333444432  223335


Q ss_pred             cccccCCchhhhhheecHHhhhccCCC------------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHH
Q psy6547         108 GKALSGGLYPISAVLADDEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGE  171 (266)
Q Consensus       108 sK~~~~g~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~  171 (266)
                      .|+++ . ..+|++..++++.+.+.+.            .....++++.....+..++|+.+..+    ++.++.+++.+
T Consensus       195 qK~lg-P-~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~  272 (360)
T PRK05355        195 QKNIG-P-AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA  272 (360)
T ss_pred             ccccc-C-CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            59997 3 4489999999988776651            11223566777788888999988765    47788888999


Q ss_pred             HHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHH
Q psy6547         172 IFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELR  248 (266)
Q Consensus       172 ~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~  248 (266)
                      ++++.|++ ++.. .+.......+.   ++.|.++.  ..+..++.+.+.++|+...++.  .+.+|+|+...+|.+|++
T Consensus       273 ~l~~~l~~-~~~~~~~~~~~~rs~~---v~sf~~~~--~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~  346 (360)
T PRK05355        273 LLYDAIDS-SDFYRNPVAPEDRSRM---NVPFTLAD--EELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQ  346 (360)
T ss_pred             HHHHHHHh-CCCcccCCChhhcCCc---EEEEEcCC--hHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHH
Confidence            99999998 6531 11110112234   68888776  4444678788899999986553  478999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6547         249 EGLDIIINTINT  260 (266)
Q Consensus       249 ~~~~~l~~~~~~  260 (266)
                      ++++.|++++..
T Consensus       347 ~l~~~l~~~~~~  358 (360)
T PRK05355        347 ALVDFMKEFERR  358 (360)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.50  E-value=2.2e-12  Score=122.84  Aligned_cols=240  Identities=14%  Similarity=0.131  Sum_probs=150.6

Q ss_pred             cccccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           9 SYNEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ..+.....+-+|+.++.+     |+++|++.++++ .++++|++....+. |.+.   +++++|+++|+++|+++++|.+
T Consensus       603 np~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e---~~I~eI~~i~h~~G~~v~VDgA  678 (954)
T PRK05367        603 NPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFE---ETIREICEIVHEHGGQVYLDGA  678 (954)
T ss_pred             hHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeec---CCHHHHHHHHHHcCCEEEEECc
Confidence            334455667788888864     689999999664 35777776654443 4331   3799999999999999999999


Q ss_pred             cc-CcCCcCcccccccCCCCcCeeeec--cccc-----CCchhhhhheecHHhhhccCCCCC--------CCCCCCcHH-
Q psy6547          83 QT-GLGRTGKLLAIHYEDVRPDIVILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH--------GSTYGGNPL-  145 (266)
Q Consensus        83 ~~-~~~~~g~~~~~~~~~~~~d~~~~s--K~~~-----~g~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~-  145 (266)
                      +. ++  .+-. ...  ....|+++++  |+|+     || -.+|++.+.+.+...+.....        ..+...++. 
T Consensus       679 ~~~al--~~l~-~pg--~~GADi~~~s~HK~f~~P~G~GG-Pg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g  752 (954)
T PRK05367        679 NMNAQ--VGLA-RPG--DIGADVSHLNLHKTFCIPHGGGG-PGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFG  752 (954)
T ss_pred             Chhhc--cCCC-Chh--hcCCCEEEecCcccCCCCcCCCC-CceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHH
Confidence            94 22  1110 111  2356777755  9986     33 345677777665544443211        111222222 


Q ss_pred             ---HHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHhhcccccCCCcc--cEEecCccceeeEEE-EeeCccchHHHHH
Q psy6547         146 ---ACKLAMTALDVILEENMIENAY---KMGEIFRSELSSPANKSKASF--KLSSGGLKKSINTLI-LSVSAILEVYDVC  216 (266)
Q Consensus       146 ---~~~a~~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~--~~~~~g~~~~~~~~~-~~~~~~~~~~~~~  216 (266)
                         .+..+...+..++.+++.+..+   .+++++.++|++ .....+..  .......   ++.+. ++...+.+..++.
T Consensus       753 ~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~~~~~e~---i~~~~~~~~~~g~~~~di~  828 (954)
T PRK05367        753 SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYTGANGRVAHEC---ILDLRPLKESTGITVDDIA  828 (954)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCCCcccce---EEEeecccccCCCCHHHHH
Confidence               2223444555566666666655   789999999987 32111110  0011122   33332 2221134678999


Q ss_pred             HHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         217 IKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       217 ~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++|.+.|+.....   ..+.+|+++....+++|+|++++.+..+..+..
T Consensus       829 krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~  877 (954)
T PRK05367        829 KRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEID  877 (954)
T ss_pred             HHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999986432   368999999999999999999999998877653

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.50  E-value=1.1e-12  Score=109.12  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=81.8

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      ..|.-++-+|.+|+.+|++.+++.+  ++++|+|++|...|+.+.+.    ++++|.++|+++|+++|+|.+...     
T Consensus       120 ~tl~~~Gi~v~fvd~~d~~~~~~aI--~~nTkavf~EtigNP~~~v~----Die~ia~iAh~~gvpliVDNT~at-----  188 (426)
T COG2873         120 HTLKRLGIEVRFVDPDDPENFEAAI--DENTKAVFAETIGNPGLDVL----DIEAIAEIAHRHGVPLIVDNTFAT-----  188 (426)
T ss_pred             HHHHhcCcEEEEeCCCCHHHHHHHh--CcccceEEEEeccCCCcccc----CHHHHHHHHHHcCCcEEEecCCCc-----
Confidence            4567789999999999999999999  77899999999999999998    999999999999999999999842     


Q ss_pred             cccccccCCCCcCe--eeecccccCCchhhhhheecH
Q psy6547          91 KLLAIHYEDVRPDI--VILGKALSGGLYPISAVLADD  125 (266)
Q Consensus        91 ~~~~~~~~~~~~d~--~~~sK~~~~g~~~~g~~~~~~  125 (266)
                       ++.+.-.....|+  .+.+|+++|.--.+|.++...
T Consensus       189 -pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~  224 (426)
T COG2873         189 -PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG  224 (426)
T ss_pred             -ceecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence             2233333344555  459999994225666666543

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.50  E-value=2.3e-13  Score=119.08  Aligned_cols=222  Identities=14%  Similarity=0.082  Sum_probs=133.9

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|..+. ....  
T Consensus       115 ~~G~~v~~v~~~d~~~l~~~l--~~~tklV~l~~p~NptG~~~----dl~~I~~la~~~g~~vvvD~a~~~~~-~~~~--  185 (390)
T PRK08064        115 RFGIEHTFVDMTNLEEVAQNI--KPNTKLFYVETPSNPLLKVT----DIRGVVKLAKAIGCLTFVDNTFLTPL-LQKP--  185 (390)
T ss_pred             HcCCEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCcEec----cHHHHHHHHHHcCCEEEEECCCCccc-ccCc--
Confidence            367888999988999999999  45789999999999999887    89999999999999999999995321 1111  


Q ss_pred             cccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      . .++.+..+.+++|.++|.. .-.|+++. ++++.+.++..........++..+..+...++.+  ....++..++...
T Consensus       186 ~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~  262 (390)
T PRK08064        186 L-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANK  262 (390)
T ss_pred             h-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHH
Confidence            1 2344444455889997420 22465555 4567666654333223334444443333333221  1223333444555


Q ss_pred             HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce---eccC-----
Q psy6547         173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV---TKPI-----  229 (266)
Q Consensus       173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~---~~~~-----  229 (266)
                      +.+.|++ .+      .+.+..         ...+.|.   ++.|++..  ..+...|++.   .+++   ++.+     
T Consensus       263 la~~L~~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg---~~sf~~~~--~~~~~~f~~~---l~l~~~~~s~G~~~sl  333 (390)
T PRK08064        263 IALYLQE-HPKVQNVYYPGLQTHLGFDIQQSQATSAGA---VLSFTLQS--EEAVRQFVSH---VKLPVFAVSLGAVESI  333 (390)
T ss_pred             HHHHHhc-CCCcceEECCCCCCCccHHHHHHhCCCcce---EEEEEECC--HHHHHHHHHh---CCcceEcccCCCCcce
Confidence            5555554 22      111111         1224566   89999854  2233344433   3441   1111     


Q ss_pred             ----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 ----------------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                            ..+.+|+|+.+.++++.++.+.++|+++
T Consensus       334 ~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        334 LSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             eECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence                                  1478999999888777777777777653

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.49  E-value=7.1e-13  Score=115.47  Aligned_cols=190  Identities=12%  Similarity=0.018  Sum_probs=116.9

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.++..++..+.+++++++  .+++++|++|.+.|++|.+.    ++++|+++|+++|+++|+|++|+.    +...
T Consensus       122 ~~~Gi~v~~v~~~~~e~l~~~l--~~~TklV~lespsNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~~~  191 (394)
T PRK09028        122 KGFGIETTYYDPMIGEGIRELI--RPNTKVLFLESPGSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PINS  191 (394)
T ss_pred             hhcceEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cccC
Confidence            3456677778777788899998  55799999999999887775    999999999999999999999952    1111


Q ss_pred             ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      ....+|.+..+.+.+|+++|  . .-.|+++.++++.+.+...........+|..+..+...|+-+.  -..++..+++.
T Consensus       192 ~Pl~~GaDivv~S~tK~l~Gh~d-~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~  268 (394)
T PRK09028        192 RPFEMGVDISIQAATKYIVGHSD-VMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG--VRLAQHEKNAL  268 (394)
T ss_pred             CccccCceEEEEeCCeEecCCCC-EEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHH
Confidence            11134555555568899984  3 3456666666665544422222223456666655555444321  12333444555


Q ss_pred             HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547         172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK  220 (266)
Q Consensus       172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (266)
                      .+.+.|++ -+      .+.++.         ...+.|.   ++.|.+...+.....+|++.|.
T Consensus       269 ~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~f~~~l~  328 (394)
T PRK09028        269 KVANWLAT-RPEVDHVRHPAFETCPGHEFFKRDFSGSNG---LFSFVLKQGDPKAVTALVEGMQ  328 (394)
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCccHHHHHHhccCCCc---eEEEEECCCCHHHHHHHHHhCC
Confidence            55565554 21      122211         1224567   9999996311233556666664

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.49  E-value=2.7e-13  Score=118.16  Aligned_cols=226  Identities=12%  Similarity=0.042  Sum_probs=133.5

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      .+.+++.++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ....+  +
T Consensus       116 ~gi~v~~vd~~d~e~l~~~i--~~~tklV~lesP~NPtG~v~----dl~~I~~la~~~gi~vIvDea~~~~-~~~~p--l  186 (388)
T PRK08861        116 GDFKVQFVDQSDAAALDAAL--AKKPKLILLETPSNPLVRVV----DIAELCQKAKAVGALVAVDNTFLTP-VLQKP--L  186 (388)
T ss_pred             CCeEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCcccc-ccCCC--c
Confidence            34577777778999999998  44789999999999999887    7899999999999999999999421 11111  1


Q ss_pred             ccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                       ..|.+..+.+.+|.++|. -...|+++++ +++.+.+...........+|..+......|+-+.-  ..++-.+++..+
T Consensus       187 -~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~~a~~~  263 (388)
T PRK08861        187 -ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEESAQQI  263 (388)
T ss_pred             -ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH--HHHHHHHHHHHH
Confidence             234444445588999853 0346777664 45555554322233344566665555544432211  223333344445


Q ss_pred             HHHhhcc-----cccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHH--CCce--------eccC
Q psy6547         174 RSELSSP-----ANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKD--AGLV--------TKPI  229 (266)
Q Consensus       174 ~~~l~~~-----~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~--------~~~~  229 (266)
                      .+.|+.-     ...+.++.         ...+.|.   ++.|++.. +.....+|++.|.=  .+.-        ..|.
T Consensus       264 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg---~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~  339 (388)
T PRK08861        264 LAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGS---MLSFEFAG-SFEQLKVFVKALALFSLAESLGGVESLICHPA  339 (388)
T ss_pred             HHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCc---eEEEEeCC-CHHHHHHHHhcCCcceEccCCCCCcceeeCCC
Confidence            5555530     11122221         1235577   89999964 12234556665542  1111        1110


Q ss_pred             -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                       ..+.||+|..+.    +.+.+++.|+++++..
T Consensus       340 ~~~h~~~~~~~~~~~gi~~~liRlsvGlE----~~~dli~Dl~~al~~~  384 (388)
T PRK08861        340 SMTHRAMGEEALAEAGVSQQLLRLSVGLE----DAQDLIADLDQAFAKA  384 (388)
T ss_pred             cccccccCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHHH
Confidence                             236899996554    4566677777777654

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.48  E-value=6.3e-12  Score=117.71  Aligned_cols=235  Identities=12%  Similarity=0.116  Sum_probs=144.5

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ....+-+|+.++.+     |+++|++++++ ++++++|++..+.+.++.    .+++++|++++|++|+++++|-++. .
T Consensus       608 a~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~----e~~V~eI~~iah~~Galv~vDgA~~-~  682 (954)
T PRK12566        608 AQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY----EEGIREICEVVHQHGGQVYMDGANL-N  682 (954)
T ss_pred             HHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCcee----cchHHHHHHHHHHcCCEEEEEeeCh-h
Confidence            44457788888874     79999999963 347887877766554432    3579999999999999999999993 1


Q ss_pred             CCcCccccccc-CCCCcCeeeec--cccc----CCchhhhhheecHHhhhccCCCC----------CC---CCCCCcHHH
Q psy6547          87 GRTGKLLAIHY-EDVRPDIVILG--KALS----GGLYPISAVLADDEVMGTLVPGT----------HG---STYGGNPLA  146 (266)
Q Consensus        87 ~~~g~~~~~~~-~~~~~d~~~~s--K~~~----~g~~~~g~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~  146 (266)
                      +..    .+.. -....|+++++  |+|+    +|..-+|.+.+.+.+...+....          ..   ...+.+.+.
T Consensus       683 a~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~  758 (954)
T PRK12566        683 AQV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASI  758 (954)
T ss_pred             hcc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHH
Confidence            111    1111 23567787755  9886    22144666666664443333210          11   111233333


Q ss_pred             HHHHHHHHHHHhhccHHH---HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe---eCccchHHHHHHHHH
Q psy6547         147 CKLAMTALDVILEENMIE---NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS---VSAILEVYDVCIKMK  220 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~l~  220 (266)
                      +.++..-++.++.+ +.+   ....++.++.++|.+ .....+.  ...... -+=+.+.+.   ...+.+..++.++|.
T Consensus       759 l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~-~~~v~~~--~~~~~~-~hEfii~~~~l~~~~g~~~~dvakRL~  833 (954)
T PRK12566        759 LPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG-AFPVLYR--GRNERV-AHECILDLRPLKAQTGISEEDVAKRLM  833 (954)
T ss_pred             HHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh-hCCCCcC--CCCCCe-eeEEEEEccccccccCCCHHHHHHHHH
Confidence            44444445555544 322   224578888888877 2221111  110010 001223322   211356788999999


Q ss_pred             HCCceecc---CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVTKP---ISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~~~---~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.||..-.   ...+++|++++...+++|||++++.++.+.++.
T Consensus       834 d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~  877 (954)
T PRK12566        834 DYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI  877 (954)
T ss_pred             HCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence            99887531   237899999999999999999999999988775

>KOG1358|consensus

Probab=99.48  E-value=2.3e-12  Score=107.62  Aligned_cols=238  Identities=20%  Similarity=0.199  Sum_probs=161.5

Q ss_pred             ccccCCCCCCceeecCCCHHHHHHHHhcCC-------C----EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547          10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNP-------N----ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~-------~----~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      .+..+.....++.|.|||.+++|+++-+..       +    .+.|++|..+.|+|.+.    ++.+|.++..+|...+|
T Consensus       192 q~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~----pl~~iv~lk~Kyk~Rvi  267 (467)
T KOG1358|consen  192 QKGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDIC----PLPEIVKLKNKYKFRVI  267 (467)
T ss_pred             HHHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccc----ccHHHHHHHhhheEEEE
Confidence            355677899999999999999999884421       1    46677999999999998    99999999999999999


Q ss_pred             Eecccc-C-cCCcCcccccccCCC---CcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHH
Q psy6547          79 ADEVQT-G-LGRTGKLLAIHYEDV---RPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKL  149 (266)
Q Consensus        79 ~De~~~-~-~~~~g~~~~~~~~~~---~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a  149 (266)
                      .||.++ | +|.+|.+ ...++++   +.|+++.|  -++++|   .|+.+++..+.+.-+-...+..|  +..|....+
T Consensus       268 ldEs~SfG~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas~---GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~a  343 (467)
T KOG1358|consen  268 LDESLSFGVLGKTGRG-VTEHFGVPITDIDIVTASMETALASG---GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGA  343 (467)
T ss_pred             EecccccccccccCcc-ccccCCCCccceeeeeeccccccccc---CceeecceeeEeeeeccccceeeeccCchhhhhh
Confidence            999994 1 4555553 3455665   35666644  455532   45555554433322211222223  445666677


Q ss_pred             HHHHHHHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc------chHHHHHHHHHHC
Q psy6547         150 AMTALDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIKMKDA  222 (266)
Q Consensus       150 ~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~l~~~  222 (266)
                      +..+++..+. ++..+.++.....++..|.. ...  +.  ..+ ..-||++.+.+...++      .--++++.++..+
T Consensus       344 a~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~-~s~--~~--v~~-~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~  417 (467)
T KOG1358|consen  344 AIKAILIEEWNPEIVQPLRAKVAKFHAALSS-NSG--FI--VSG-SPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE  417 (467)
T ss_pred             HHHHHHHHhhCcchhhhhhccccccchhhhc-CCc--eE--Eec-CcCCceeeeeecccccchHHHHHHHHHHHHHHHhh
Confidence            7777777655 45677777777777777776 211  11  112 2246788888876331      1245567777766


Q ss_pred             CceeccC----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPI----------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       223 gi~~~~~----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |+.++..          -...+|+|+...+++++++++.+.|+++....
T Consensus       418 ~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  418 GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV  466 (467)
T ss_pred             cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence            8877642          24689999999999999999999999987653

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.47  E-value=7.7e-13  Score=115.22  Aligned_cols=221  Identities=13%  Similarity=0.083  Sum_probs=132.4

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      ++.+++.++..|++++++++  ++++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|... ..+.+.  
T Consensus       112 ~G~~v~~v~~~d~~~l~~ai--~~~tklV~le~P~NPtg~~~----dl~~I~~la~~~g~~lvvD~a~~~~-~~~~p~--  182 (377)
T PRK07671        112 FGIEHTFVDTSNLEEVEEAI--RPNTKAIYVETPTNPLLKIT----DIKKISTIAKEKGLLTIVDNTFMTP-YWQSPI--  182 (377)
T ss_pred             CCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCCcc-ccCChh--
Confidence            57788888888999999999  45789999999888888876    8999999999999999999999532 112221  


Q ss_pred             ccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                       .++.+..+.+++|+++|.- .-.|++++ ++++.+.+...........++..+..+...++.+..  ..++..++...+
T Consensus       183 -~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~l  259 (377)
T PRK07671        183 -SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAI  259 (377)
T ss_pred             -hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHH
Confidence             2344444445889998420 12444555 556666555332222233455555544444433322  334444555566


Q ss_pred             HHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------eecc
Q psy6547         174 RSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VTKP  228 (266)
Q Consensus       174 ~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~~~  228 (266)
                      .+.|++ .+      .+.+..         ...+.|.   ++.|++..  .....+|++.|.  ..+.        +..|
T Consensus       260 a~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~---~~s~~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~  333 (377)
T PRK07671        260 AEFLNN-HPAVNKVYYPGLPSHPNHELAKEQANGFGG---MISFDVGS--EETANKVLERLQYFTLAESLGAVESLISIP  333 (377)
T ss_pred             HHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEeCC--HHHHHHHHHhCCcceEccCCCCCCeEeECC
Confidence            666654 21      112111         1234577   89999943  344556666654  2111        1111


Q ss_pred             C-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         229 I-----------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       229 ~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .                 ..+.||+|..+.    |.+.+++.|+.++
T Consensus       334 ~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al  376 (377)
T PRK07671        334 SQMTHASIPADRRKELGITDGLIRISVGIE----DGEDLIEDLAQAL  376 (377)
T ss_pred             CccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHh
Confidence            0                 246899996654    4556666666654

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.46  E-value=1.1e-12  Score=114.53  Aligned_cols=225  Identities=11%  Similarity=0.081  Sum_probs=134.8

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~   92 (266)
                      ...+.+++.+. +|++++++++++. ++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|+ ++.  ..+
T Consensus       113 ~~~g~~v~~~~-~d~~~l~~~i~~~-~tklV~ie~p~NPtG~v~----dl~~I~~la~~~gi~livD~t~a~~~~--~~~  184 (385)
T PRK08574        113 EKFGVKVVLAY-PSTEDIIEAIKEG-RTKLVFIETMTNPTLKVI----DVPEVAKAAKELGAILVVDNTFATPLL--YRP  184 (385)
T ss_pred             hccCcEEEEEC-CCHHHHHHhcCcc-CceEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCCcccc--CCh
Confidence            33455666554 4789999999421 689999999999999886    78999999999999999999993 221  111


Q ss_pred             cccccCCCCcCeeeecccccCCchh-hhhhe-ecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSGGLYP-ISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~g~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                        . ..|.+..+.+++|+++|..-. .|+++ .++++.+.+...........+++.+..+...++.+.  ...++..+++
T Consensus       185 --l-~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~--~R~~~~~~na  259 (385)
T PRK08574        185 --L-RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLE--VRFERQCRNA  259 (385)
T ss_pred             --h-hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHH
Confidence              1 235555556699999852023 35444 466766665533222334456666666655554432  2334445566


Q ss_pred             HHHHHHhhcccc------cCCCccc---------E--EecCccceeeEEEEeeCccchHHHHHHHHH--HCCce------
Q psy6547         171 EIFRSELSSPAN------KSKASFK---------L--SSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV------  225 (266)
Q Consensus       171 ~~l~~~l~~~~~------~~~~~~~---------~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~------  225 (266)
                      ..+.+.|+. .+      .+.++..         .  .+.|.   ++.|++.. +.....+|++.|.  ..+.-      
T Consensus       260 ~~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~---~~s~~l~~-~~~~~~~~~~~l~l~~~~~s~G~~~s  334 (385)
T PRK08574        260 MAIAEFLSE-HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGG---VVSFRVKG-GRDAVLKFLRSLKLIKPSPSLGGVES  334 (385)
T ss_pred             HHHHHHHHc-CCCcCEEECCCCCCCchHHHHHHhCCCCCcce---EEEEEeCC-CHHHHHHHHHcCCcceEccCCCCCcc
Confidence            666666664 22      1222221         1  13566   89999964 1234556666654  21111      


Q ss_pred             -e-ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         226 -T-KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       226 -~-~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       + .|.                 ..+.+|+|+.+.    +.+.+++.|.+++++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~al~~  384 (385)
T PRK08574        335 LATYPVKSAASPIPEEDRKALGITEDLVRLSVGLE----DVEDLIEDLDQALGS  384 (385)
T ss_pred             eeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhc
Confidence             1 010                 136899996654    456667777776653

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.46  E-value=4.4e-12  Score=109.35  Aligned_cols=201  Identities=10%  Similarity=0.036  Sum_probs=140.6

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP  117 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~  117 (266)
                      ++++++|.+.++.+.+|... +        ++++.+++++++|-+++ ++  +....++.++  .-+.+..|+++ . ..
T Consensus       128 ~~~~~~v~~th~ETstGv~~-~--------~l~~~~~~l~iVDavss-~g--~~~id~~~~d--~~~~ssqK~lg-P-~G  191 (349)
T TIGR01364       128 SEDAAYVHYCANETIHGVEF-R--------ELPDVKNAPLVADMSSN-IL--SRPIDVSKFG--LIYAGAQKNIG-P-AG  191 (349)
T ss_pred             CCCCCEEEEcCCCCcccEec-c--------eecccCCCeEEEEcccc-cc--CccCCHHHcc--EEEEecccccC-C-Cc
Confidence            45789999999999999864 1        67777899999999995 32  2333444333  33333559997 3 44


Q ss_pred             hhhheecHHhhhccCCCC-----------CCC-CCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccc
Q psy6547         118 ISAVLADDEVMGTLVPGT-----------HGS-TYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       118 ~g~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      +|++..++++.+.+.+..           ... .++++.....+..++|+.+.++    ++.++.+++.+++++.|++ +
T Consensus       192 lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~  270 (349)
T TIGR01364       192 LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-S  270 (349)
T ss_pred             eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence            899999999887664320           012 2366667778888899988764    3677888899999999998 6


Q ss_pred             cc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         182 NK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       182 ~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +. ....... ...+.   ++.|.++..  ....++.+.+.++|+.+.++.  .+.+|+|+...+|++|++++++.|+++
T Consensus       271 ~gl~~~~~~~~~rs~~---v~sf~~~~~--~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~  345 (349)
T TIGR01364       271 NGFYRNPVDPRNRSRM---NVVFTLGNE--ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEF  345 (349)
T ss_pred             CCeeccCCCHHHcCCe---EEEEecCCh--hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHH
Confidence            42 1111101 11223   677887652  123677788899999776663  478999999999999999999999987


Q ss_pred             HHH
Q psy6547         258 INT  260 (266)
Q Consensus       258 ~~~  260 (266)
                      +.+
T Consensus       346 ~~~  348 (349)
T TIGR01364       346 QKK  348 (349)
T ss_pred             HHh
Confidence            654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.46  E-value=8.9e-13  Score=116.36  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      .+.++..++.+|++++++++  .+++++|++++++|++|.+.    ++++|.++|+++|+++|+|++|... ....+  .
T Consensus       121 ~gi~v~~~d~~d~e~le~ai--~~~tklV~lesp~NPtG~v~----dl~~I~~la~~~~i~vVvD~a~a~~-~~~~p--~  191 (425)
T PRK06084        121 IGIETRFAAHDDIAALEALI--DERTKAVFCESIGNPAGNII----DIQALADAAHRHGVPLIVDNTVATP-VLCRP--F  191 (425)
T ss_pred             ceeEEEEECCCCHHHHHHHh--ccCCcEEEEeCCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCccc-ccCCh--h
Confidence            45677788888999999999  44689999999999999987    7999999999999999999999521 11111  1


Q ss_pred             ccCCCCcCeeeecccccC-Cchhhhhhee
Q psy6547          96 HYEDVRPDIVILGKALSG-GLYPISAVLA  123 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~-g~~~~g~~~~  123 (266)
                       .++.+..+.+++|+++| | .++|.++.
T Consensus       192 -~~gaDivv~S~tK~l~G~g-~~~gG~v~  218 (425)
T PRK06084        192 -EHGADIVVHSLTKYIGGHG-TSIGGIVV  218 (425)
T ss_pred             -hcCCCEEEECchhcccccc-cceeEEEE
Confidence             23444445568999984 4 66776555

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.46  E-value=1.7e-12  Score=113.06  Aligned_cols=227  Identities=11%  Similarity=0.006  Sum_probs=133.3

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+|..++..+.+++++++  .+++++|++|.+.|+.+.+.    ++++|+++|+++|+++|+|++|...    ..+
T Consensus       125 ~~~Gi~v~~vd~~~~e~l~~al--~~~TklV~lesPsNP~l~v~----dl~~I~~la~~~g~~vvVD~t~a~p----~~~  194 (395)
T PRK05967        125 KRLGVEVEYYDPEIGAGIAKLM--RPNTKVVHTEAPGSNTFEMQ----DIPAIAEAAHRHGAIVMMDNTWATP----LYF  194 (395)
T ss_pred             HhcCeEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCcHH----HHHHHHHHHHHhCCEEEEECCccCc----eec
Confidence            4567788888877778899999  45789999999888766554    9999999999999999999999532    111


Q ss_pred             ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      ....+|.+..+.+.+|.++|  . .-.|+++.+++..+.+...........+|..+......|+-+.-  ..++-.+++.
T Consensus       195 ~pl~~GaDivv~S~tKy~~Gh~d-~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l--R~~~~~~na~  271 (395)
T PRK05967        195 RPLDFGVDISIHAATKYPSGHSD-ILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI--RLEHHRKSAL  271 (395)
T ss_pred             ChhHcCCCEEEEecccccCCCCC-eeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH--HHHHHHHHHH
Confidence            11234666666669999985  4 44566666766555443211112223455555544444433211  1223333444


Q ss_pred             HHHHHhhcc-----cccCCCccc---------EEecCccceeeEEEEeeC---ccchHHHHHHHHHHCCceecc------
Q psy6547         172 IFRSELSSP-----ANKSKASFK---------LSSGGLKKSINTLILSVS---AILEVYDVCIKMKDAGLVTKP------  228 (266)
Q Consensus       172 ~l~~~l~~~-----~~~~~~~~~---------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~------  228 (266)
                      .+.+.|++-     ...+.++..         ..+.|.   ++.|++...   +...+.+|++.|.=-.+.+..      
T Consensus       272 ~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sL  348 (395)
T PRK05967        272 EIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASG---IFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESL  348 (395)
T ss_pred             HHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCce---EEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCccee
Confidence            444445430     111222111         124466   899999741   123355566655421111110      


Q ss_pred             ---------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         229 ---------------ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       229 ---------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                     ..++.+|+|..+.    +.+.+++.|+++++.
T Consensus       349 i~~~~~~~~~~~~~~~~~~liRlSvGlE----d~~dLi~Dl~~Al~~  391 (395)
T PRK05967        349 ALHVKLGDRTVAKAPYAGPVIRLQIGLE----DVPDLKADLERGFAA  391 (395)
T ss_pred             eeeCCCChhHhhhccCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence                           1235799996655    456667777776654

>PRK05939 hypothetical protein; Provisional

Probab=99.46  E-value=1.1e-12  Score=114.84  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=77.3

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      -++.+++.++..|++++++++  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|...    ..+.
T Consensus       108 ~~G~~v~~v~~~d~e~l~~~l--~~~tklV~vesp~NptG~v~----dl~~I~~la~~~gi~livD~t~a~~----~~~~  177 (397)
T PRK05939        108 GLGVEVTMVDATDVQNVAAAI--RPNTRMVFVETIANPGTQVA----DLAGIGALCRERGLLYVVDNTMTSP----WLFR  177 (397)
T ss_pred             hcCCEEEEECCCCHHHHHHhC--CCCCeEEEEECCCCCCCCHH----hHHHHHHHHHHcCCEEEEECCcccc----cccC
Confidence            457788999988999999999  45789999999999999886    9999999999999999999998421    1111


Q ss_pred             cccCCCCcCeeeecccccC-Cchhhhhheec
Q psy6547          95 IHYEDVRPDIVILGKALSG-GLYPISAVLAD  124 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~  124 (266)
                      ....|.+..+.+++|.++| | ..+|+++..
T Consensus       178 ~~~~gaDivv~S~sK~~~g~g-~~igg~v~~  207 (397)
T PRK05939        178 PKDVGASLVINSLSKYIAGHG-NALGGAVTD  207 (397)
T ss_pred             ccccCCEEEEecCeecccCCC-CeEEEEEec
Confidence            1123455555669999995 5 778877664

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.45  E-value=5.6e-13  Score=116.16  Aligned_cols=226  Identities=13%  Similarity=0.074  Sum_probs=126.4

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ..+.+++.++..|++++++.+  .+++++|+++.++|++|.+.    ++++|.++|+++|+++|+|++|+.. ..+.+  
T Consensus       111 ~~gi~v~~vd~~d~e~l~~ai--~~~t~lV~lesP~Nptg~~~----di~~I~~la~~~gi~vivD~t~a~~-~~~~p--  181 (380)
T PRK06176        111 KNGLSCTIIDTSDLSQIKKAI--KPNTKALYLETPSNPLLKIT----DLAQCASVAKDHGLLTIVDNTFATP-YYQNP--  181 (380)
T ss_pred             hcCeEEEEcCCCCHHHHHHhc--CcCceEEEEECCCCCCceec----CHHHHHHHHHHcCCEEEEECCcccc-ccCCc--
Confidence            356677888888999999999  45789999999899899886    7999999999999999999999532 11222  


Q ss_pred             cccCCCCcCeeeecccccCCc-hhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--hhccHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LEENMIENAYKMG  170 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~  170 (266)
                      . .++.+..+.+++|.++|.. .-.|+++.+ +++.+.+...........++.........++-+  +.+...++..++.
T Consensus       182 ~-~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la  260 (380)
T PRK06176        182 L-LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVA  260 (380)
T ss_pred             c-ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            1 2344444444779998530 124556664 455454442211111222333333333223211  1122333333333


Q ss_pred             HHHHHH--hhcccccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee----------ccC
Q psy6547         171 EIFRSE--LSSPANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT----------KPI  229 (266)
Q Consensus       171 ~~l~~~--l~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~  229 (266)
                      +.+.++  +.. ...+.+..         ...+.|.   ++.|++..  .....+|++.|.=-.+.+          .|.
T Consensus       261 ~~L~~~p~v~~-v~~p~l~~~~~~~~~~~~~~g~g~---~~s~~~~~--~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~  334 (380)
T PRK06176        261 EFLEKHPKVEK-VYYPGLPTHPNHELAKKQMRGFSG---MLSFTLKN--DSEAVAFVESLKLFILGESLGGVESLVGIPA  334 (380)
T ss_pred             HHHHhCCCeeE-EECCCCCCCccHHHHHhhCCCCce---EEEEEECC--HHHHHHHHHcCCcceEccCCCCCCceeeCCc
Confidence            333322  111 11122111         1224566   89999975  334556666554211111          111


Q ss_pred             -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                       ..+.||+|..+.    +.+.+++.|++++++
T Consensus       335 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~Al~~  378 (380)
T PRK06176        335 FMTHACIPKEQREAAGIRDGLVRLSVGIE----HEQDLLEDLEQAFAK  378 (380)
T ss_pred             ccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence                             246899995544    566677777777754

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.44  E-value=2e-11  Score=99.95  Aligned_cols=220  Identities=15%  Similarity=0.172  Sum_probs=163.0

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d~~  105 (266)
                      +++++++.+  +.++++++++.++.-+|.+.    ++.+|-.++|++|++++.|=+|+.    |. +..+...|.+.-+.
T Consensus       155 ~P~~~~~~~--~dd~AvV~L~~V~y~TGql~----dm~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaDfaig  224 (407)
T COG3844         155 APRALEEAI--TDDVAVVLLSHVNYKTGQLL----DMRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGADFAIG  224 (407)
T ss_pred             ChHHHHHhh--ccceEEEEecccccccccee----eHHHHHHHHHhcCceEEeehhccc----CCcceeecccCCCeeee
Confidence            577889888  66899999999999999998    999999999999999999999952    22 22345567777788


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILE---  159 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~---  159 (266)
                      +.-|.++||-=..+++...++..+...+.                       ..+..-+++.+++++...+|++...   
T Consensus       225 csyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i  304 (407)
T COG3844         225 CSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDI  304 (407)
T ss_pred             eeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCH
Confidence            88899995522234555555443332110                       0111224566678888889988765   


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCc----ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKAS----FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIR  235 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR  235 (266)
                      .+++++...+++++.+.++.......+.    ..-...|.   .+++..+.     +..+++.|.++||+.-...++.+|
T Consensus       305 ~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGs---qvS~~hp~-----~~~V~qaLi~rGVigD~R~P~vlR  376 (407)
T COG3844         305 TELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGS---QVSLYHPH-----GYQVMQALIDRGVIGDFREPDVLR  376 (407)
T ss_pred             HHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccc---eeeEecCc-----HHHHHHHHHHcCccccccCCCeee
Confidence            4588888889999999888733321111    10123466   78888776     789999999999999888899999


Q ss_pred             Eec-cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         236 LSP-ALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       236 ~~~-~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +.+ +++++-.|+-.+++.|.+++++...|
T Consensus       377 fgftPlY~~~~DVw~AV~~L~evL~t~a~~  406 (407)
T COG3844         377 FGFTPLYVSFVDVWDAVDALEEVLDTLAWQ  406 (407)
T ss_pred             ecCccceechhHHHHHHHHHHHHHHhhccC
Confidence            987 57889999999999999999987655

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.44  E-value=6.4e-12  Score=108.84  Aligned_cols=198  Identities=12%  Similarity=0.034  Sum_probs=135.9

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP  117 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~  117 (266)
                      ++++++|.+.++.+.+|...         .++++.||+++++|-+++ ++  +.+..++.++  .++.+..|++| . ..
T Consensus       136 ~~~~~lV~~~h~~t~tG~~~---------~~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P-~G  199 (355)
T cd00611         136 APDAAYVHYCSNETIHGVEF---------DEVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-P-AG  199 (355)
T ss_pred             CCCCCEEEEeCCcccccEEc---------ceecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-C-Cc
Confidence            45789999999998888862         145556999999999995 22  2233444444  34444679886 3 45


Q ss_pred             hhhheecHHhhhccCCCC-----------CC-CCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccc
Q psy6547         118 ISAVLADDEVMGTLVPGT-----------HG-STYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       118 ~g~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      +|+++.++++.+.+.+..           .. ...+++.....+..++++++..+    .+.++.+++.+++++.|++ +
T Consensus       200 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~  278 (355)
T cd00611         200 VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-S  278 (355)
T ss_pred             eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence            899999998887655421           01 13466666788888899988664    4678888899999999998 6


Q ss_pred             ccC--CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         182 NKS--KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       182 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ..-  .........+.   ++.|.++..  ....++.+.+.++|+...++.  .+.+|+|++..+|++|++++++.|+++
T Consensus       279 ~gl~~~~~~~~~rs~~---vvsf~~~~~--~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         279 NGFYRGPVDKRARSRM---NVPFRLGKE--ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ccccccCCCHHHcCce---EEEEEcCCh--hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            321  11110011223   577876651  122556677888999855553  478999999999999999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.44  E-value=8.5e-13  Score=116.56  Aligned_cols=100  Identities=18%  Similarity=0.163  Sum_probs=77.2

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++.+|++++++++  .+++++|++++++|++|.+.    ++++|+++|+++|+++|+|++|... .....  
T Consensus       119 ~~G~~v~~v~~~d~~~l~~~l--~~~t~~V~le~p~NPtg~v~----dl~~I~~la~~~~i~livD~t~~~~-~~~~~--  189 (418)
T TIGR01326       119 RLGIEVRFVDPDDPEEFEKAI--DENTKAVFAETIGNPAINVP----DIEAIAEVAHAHGVPLIVDNTFATP-YLCRP--  189 (418)
T ss_pred             HcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCchh-hcCCc--
Confidence            467788999988999999999  44689999999999888886    7999999999999999999999421 11111  


Q ss_pred             cccCCCCcCeeeecccccC-CchhhhhheecH
Q psy6547          95 IHYEDVRPDIVILGKALSG-GLYPISAVLADD  125 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~  125 (266)
                      . ..+.+..+.+++|++++ | +++|+++.+.
T Consensus       190 l-~~g~Divv~S~sK~l~g~G-~~lGg~v~~~  219 (418)
T TIGR01326       190 I-DHGADIVVHSATKYIGGHG-TAIGGVIVDG  219 (418)
T ss_pred             h-hcCCeEEEECccccccCCc-cceEEEEEec
Confidence            1 12333334459999995 7 8999988754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.43  E-value=1e-11  Score=108.66  Aligned_cols=226  Identities=15%  Similarity=0.106  Sum_probs=138.0

Q ss_pred             CCCCceeecC------CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          16 HMPGYNIIPY------NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        16 ~~~~v~~~~~------~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      .+.+++.++.      .|++++++.+++.  +++++|++..   ..|...    ++++|.++|++||++||+|++|+...
T Consensus        89 ~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~----~~~~i~~l~~~~~~~lI~D~a~a~g~  161 (380)
T TIGR03588        89 CGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSV----DMQAIAALAKKHGLKIIEDASHALGA  161 (380)
T ss_pred             cCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccC----CHHHHHHHHHHcCCEEEEECCCcccC
Confidence            3556666653      3789999999532  4678877543   245554    79999999999999999999995211


Q ss_pred             CcCcccccccCCC--CcCeeeec----ccccCCchhhhhhee-cHHhhhccCCC-------------------------C
Q psy6547          88 RTGKLLAIHYEDV--RPDIVILG----KALSGGLYPISAVLA-DDEVMGTLVPG-------------------------T  135 (266)
Q Consensus        88 ~~g~~~~~~~~~~--~~d~~~~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~-------------------------~  135 (266)
                      .    +.-...|.  ..|+.++|    |.++.|  ..|+++. ++++.+.++..                         .
T Consensus       162 ~----~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  235 (380)
T TIGR03588       162 E----YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE  235 (380)
T ss_pred             c----cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec
Confidence            1    11112233  34666655    888755  3555554 45555443210                         0


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccce-eeEEEEeeCccchHHH
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKS-INTLILSVSAILEVYD  214 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~  214 (266)
                      .+..+..+.+.++.+...|+.+  +...++.+++.+++.+.|.. ++.........+... ++ ++.+.+....+.+.++
T Consensus       236 ~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~r~~  311 (380)
T TIGR03588       236 LGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKS-AWHLYPILLDQEFGCTRKE  311 (380)
T ss_pred             cccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEe-EEEEEEEEECCcCCCCHHH
Confidence            1112334555555555555543  45677888889999999988 543111110101000 01 2333333212356889


Q ss_pred             HHHHHHHCCceeccC-------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         215 VCIKMKDAGLVTKPI-------------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       215 ~~~~l~~~gi~~~~~-------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +.+.|.++||.++..                         ....+++.++...|++|++..++.|++++
T Consensus       312 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       312 VFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             HHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999987521                         01568888888899999999999998763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.42  E-value=3.1e-12  Score=111.03  Aligned_cols=223  Identities=18%  Similarity=0.135  Sum_probs=129.9

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC-CEEEEeccccCcCCcCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGK   91 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g-~~li~De~~~~~~~~g~   91 (266)
                      +..++.++.+++..|++++++++  .+++++|++|++.|+...+.    ++++|+++|+++| +++|+|+++...     
T Consensus       115 l~~~gv~v~~~d~~d~~~l~~~l--~~~t~~v~~EspsNP~l~v~----Dl~~i~~~a~~~g~~~~vVDnT~atp-----  183 (386)
T PF01053_consen  115 LPRFGVEVTFVDPTDLEALEAAL--RPNTKLVFLESPSNPTLEVP----DLEAIAKLAKEHGDILVVVDNTFATP-----  183 (386)
T ss_dssp             HHHTTSEEEEESTTSHHHHHHHH--CTTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT-----
T ss_pred             hcccCcEEEEeCchhHHHHHhhc--cccceEEEEEcCCCcccccc----cHHHHHHHHHHhCCceEEeeccccce-----
Confidence            44568889999999999999999  55899999999999887777    9999999999999 999999999421     


Q ss_pred             ccccc--cCCCCcCeeeecccccCCc-hhhhhheec--HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          92 LLAIH--YEDVRPDIVILGKALSGGL-YPISAVLAD--DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        92 ~~~~~--~~~~~~d~~~~sK~~~~g~-~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                       +.+.  .+|.+..+.+.+|.++|.- .-.|.++.+  +++.+.++......-...+|..+......|+-+  .-..++.
T Consensus       184 -~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~  260 (386)
T PF01053_consen  184 -YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQ  260 (386)
T ss_dssp             -TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHH
T ss_pred             -eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHH
Confidence             1112  2355555566889998420 224556654  355555442211111223444444444333322  2234444


Q ss_pred             HHHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccc-hHHHHHHHHHHC--Cc----
Q psy6547         167 YKMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDA--GL----  224 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--gi----  224 (266)
                      .+++..+.+.|++ -+      .+.++.         ...+.|.   ++.|++..  +. ....|.+.|.=-  +.    
T Consensus       261 ~~nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg---l~sf~l~~--~~~~~~~f~~~l~l~~~~~SlGg  334 (386)
T PF01053_consen  261 NENAEALAEFLEE-HPKVKRVYYPGLPSHPQHELAKRQMSGGGG---LLSFELKG--GEEAARRFLDALKLFSIAPSLGG  334 (386)
T ss_dssp             HHHHHHHHHHHHT-STTEEEEEETTSTTSTTHHHHHHHCSSCTS---EEEEEESS--HHHHHHHHHHH-SSSEESSS-SS
T ss_pred             HHHHHHHHHHHHh-CCCCCeEEEcccccccceeeeeecccccCc---eeEEEecc--chhhhHhHHhhhhhHhhhhhcCC
Confidence            5566666666665 21      122211         1225566   99999988  43 456677766421  11    


Q ss_pred             ----eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         225 ----VTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       225 ----~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                          +..|.                 ..+.+|+|..+    ||.+.+++.|+++++
T Consensus       335 ~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  335 VESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             SS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             cccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence                11111                 23789999554    456777777777764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.40  E-value=6.7e-11  Score=112.34  Aligned_cols=209  Identities=14%  Similarity=0.112  Sum_probs=137.9

Q ss_pred             CCEEEEEEccccCCCCcccCChHHHHHHHHHHHh---c-----CCEEEEeccccCcCCcCcccccccCCCCcCeee--ec
Q psy6547          39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---Y-----NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LG  108 (266)
Q Consensus        39 ~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~---~-----g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~s  108 (266)
                      +++++|.+....|.+|.+.    +++.+..+++.   +     ++++++|.+|+ .+.  ....+.  ...+|+++  ..
T Consensus       191 ~~t~LVa~~~vsN~tG~i~----pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~--~piDv~--~~~~Dfl~~S~H  261 (805)
T PLN02724        191 EAYNLFAFPSECNFSGAKF----PLDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGT--SPPDLS--RYPADFVVVSFY  261 (805)
T ss_pred             CCcceEEEEccccCCCCcC----CHHHHHHHHHhcccccccCcceEEEeehhhh-cCC--CCCChh--hcCCCEEEEecc
Confidence            3568999999999999986    55555444432   2     36899999994 221  122333  34566666  55


Q ss_pred             ccccCCchhhhhheecHHhhhccCCCCCCC------------------------CCCCcHHHHHHHHHHHHHHhh---cc
Q psy6547         109 KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------------TYGGNPLACKLAMTALDVILE---EN  161 (266)
Q Consensus       109 K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~a~~~~l~~~~~---~~  161 (266)
                      |++++. ..+|+++.++++.+.+.+...+.                        .-+.+..+.+++.++++.+..   +.
T Consensus       262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~  340 (805)
T PLN02724        262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISA  340 (805)
T ss_pred             eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHH
Confidence            999855 56899999888776665421111                        114566677777788887765   56


Q ss_pred             HHHHHHHHHHHHHHHhhccccc-CCCcc-cEEec-------CccceeeEEEEeeCcc--chHHHHHHHHHHCCceeccC-
Q psy6547         162 MIENAYKMGEIFRSELSSPANK-SKASF-KLSSG-------GLKKSINTLILSVSAI--LEVYDVCIKMKDAGLVTKPI-  229 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~-~~~~~-~~~~~-------g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~-  229 (266)
                      +.++..++.+++.+.|++ +.. ++.+. ...+.       ..-.|++.|.+...++  ....++...+.++||.++.+ 
T Consensus       341 I~~~~~~L~~~l~~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~  419 (805)
T PLN02724        341 IAMHTWALTHYVANSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC  419 (805)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence            788999999999999998 542 11110 01010       0123589888876432  23444555556779998743 


Q ss_pred             --------------------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 --------------------------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 --------------------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                                                            ..+++|+|+++++|.+|++++++.|++..
T Consensus       420 ~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        420 FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence                                                  01779999999999999999999999965

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.40  E-value=6.6e-11  Score=111.47  Aligned_cols=244  Identities=14%  Similarity=0.097  Sum_probs=157.7

Q ss_pred             cCCcCcccccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ++..++.......+-+|+.++.+     |+++|+++++++ +++++|+++.+.+ .|.+.   +++++|+++||++|..+
T Consensus       586 saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e---~~I~eI~~iah~~G~~v  661 (939)
T TIGR00461       586 SAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFE---PTIQHACDIVHSFGGQV  661 (939)
T ss_pred             cccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceec---ccHHHHHHHHHHcCCEE
Confidence            33433334455567788898874     799999999652 4789998887666 46553   24999999999999999


Q ss_pred             EEeccccC-cCCcCcccccccCCCCcCeeeec--cccc-----CCchhhhhheecHHhhhccCCCCC-------------
Q psy6547          78 IADEVQTG-LGRTGKLLAIHYEDVRPDIVILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH-------------  136 (266)
Q Consensus        78 i~De~~~~-~~~~g~~~~~~~~~~~~d~~~~s--K~~~-----~g~~~~g~~~~~~~~~~~~~~~~~-------------  136 (266)
                      ++|-++.. ..  +.   ...-....|+++++  |+|+     || ..+|++.+++++...+.....             
T Consensus       662 ~VDgAq~~al~--~l---~~Pg~~GaDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~I  735 (939)
T TIGR00461       662 YLDGANMNAQV--GL---TSPGDLGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSI  735 (939)
T ss_pred             EEEecChhhCC--CC---CCccccCCCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCcccc
Confidence            99999932 21  11   11112467887764  9887     55 667888888766555442111             


Q ss_pred             ---CCCCCCcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee---C
Q psy6547         137 ---GSTYGGNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV---S  207 (266)
Q Consensus       137 ---~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~  207 (266)
                         ....+.+.+.+..+...+..+..+++   .+....++.|+.++|.+ -.......   ..+..-.=+.++++.   .
T Consensus       736 ga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~---~~~~~~hEfv~~~~~~~~~  811 (939)
T TIGR00461       736 GSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVG---TLKHVAHECILDLRPLKAK  811 (939)
T ss_pred             ccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccC---CCCceeEEEEEeccchhhh
Confidence               11123444555666677777777654   44455688889999887 22111110   011100013334331   1


Q ss_pred             ccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         208 AILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       208 ~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+.+..+++++|.+.|+..-..   ..+.+.+.+.-..+++|||++++.+.++-++.
T Consensus       812 ~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~  868 (939)
T TIGR00461       812 TGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEI  868 (939)
T ss_pred             cCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            1356899999999999975321   23478888889999999999999998876664

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.40  E-value=8.7e-12  Score=109.73  Aligned_cols=224  Identities=13%  Similarity=0.108  Sum_probs=135.0

Q ss_pred             CCCCCCceeecCC-CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          14 GPHMPGYNIIPYN-DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~-d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ..++.++++++.+ |++++++++  .+++++|++|.+.|+.+.+.    ++++|+++|+++|+++|+|+++.      .+
T Consensus       122 ~~~Gi~v~~vd~~~d~~~l~~~I--~~~Tk~I~~e~pgnP~~~v~----Di~~I~~iA~~~gi~livD~T~~------tP  189 (432)
T PRK06702        122 RKLGIDVTFFNPNLTADEIVALA--NDKTKLVYAESLGNPAMNVL----NFKEFSDAAKELEVPFIVDNTLA------TP  189 (432)
T ss_pred             HHCCCEEEEECCCCCHHHHHHhC--CcCCeEEEEEcCCCcccccc----CHHHHHHHHHHcCCEEEEECCCC------ch
Confidence            4567888899885 899999999  56789999999888888887    89999999999999999999983      22


Q ss_pred             ccccc--CCCCcCeeeecccccCCchhhhhhee-cH----------Hhhh---------------------ccC-CCCCC
Q psy6547          93 LAIHY--EDVRPDIVILGKALSGGLYPISAVLA-DD----------EVMG---------------------TLV-PGTHG  137 (266)
Q Consensus        93 ~~~~~--~~~~~d~~~~sK~~~~g~~~~g~~~~-~~----------~~~~---------------------~~~-~~~~~  137 (266)
                      .....  .|.+..+.+++|.++|...-+|.++. ..          .+.+                     ... .....
T Consensus       190 ~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
T PRK06702        190 YLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRD  269 (432)
T ss_pred             hhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHH
Confidence            23332  34445555599988732122322221 11          1110                     000 00111


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc------cCCCccc---------E-EecCccceeeE
Q psy6547         138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN------KSKASFK---------L-SSGGLKKSINT  201 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~---------~-~~~g~~~~~~~  201 (266)
                      .....+|+.+..+...|+-+  +-..++..++...+.+.|++ .+      .+.+...         . .+.|.   ++.
T Consensus       270 ~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~-~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg---~~s  343 (432)
T PRK06702        270 YGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLAD-HERIEWVNYPGLDSNENYSLAQKYLKKGASG---VLT  343 (432)
T ss_pred             ccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCce---EEE
Confidence            22366777777666666533  22344445667777777765 22      1222110         1 24567   899


Q ss_pred             EEEeeCccchHHHHHHHHHHCCc----------eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         202 LILSVSAILEVYDVCIKMKDAGL----------VTKPI-----------------SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~~gi----------~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      |++.. +...+.+|++.|+=-.+          +..|.                 ..+.+|+|..+.    +.+.+++.|
T Consensus       344 f~l~~-~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlE----d~eDLi~Dl  418 (432)
T PRK06702        344 FGIKG-GLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIE----DVSDIIADL  418 (432)
T ss_pred             EEecC-CHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHH
Confidence            99964 12345567666642111          11111                 236899995544    566777778


Q ss_pred             HHHHHH
Q psy6547         255 INTINT  260 (266)
Q Consensus       255 ~~~~~~  260 (266)
                      +++++.
T Consensus       419 ~~Al~~  424 (432)
T PRK06702        419 EAALVG  424 (432)
T ss_pred             HHHHhc
Confidence            777754

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.39  E-value=2.8e-11  Score=105.71  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=136.1

Q ss_pred             CCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcC
Q psy6547          15 PHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~   87 (266)
                      ..+.+++.++.      .|++++++++  .+++++|+...   ++|...    ++++|.++|+++|+++|+|++|+ |..
T Consensus        92 ~~G~~~v~vd~~~~~~~~d~~~l~~~i--~~~tkav~~~~---~~G~~~----d~~~i~~~a~~~gi~vi~D~a~a~g~~  162 (379)
T PRK11658         92 LLGATPVMVDVDRDTLMVTPEAIEAAI--TPRTKAIIPVH---YAGAPA----DLDAIRAIGERYGIPVIEDAAHAVGTY  162 (379)
T ss_pred             HcCCEEEEEecCCCcCCcCHHHHHHhc--ccCCeEEEEeC---CCCCcC----CHHHHHHHHHHcCCeEEEECCCccCCe
Confidence            35666777663      2789999999  45678877332   255554    88999999999999999999995 221


Q ss_pred             CcCcccccccCCCCcCeeeec--ccccCCchhhhhheec-HHhhhccCCCC------------------------CCCCC
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLAD-DEVMGTLVPGT------------------------HGSTY  140 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~-~~~~~~~~~~~------------------------~~~~~  140 (266)
                      ..|.  ....++  .++.+|+  |.+++|  +.|+++.+ +++.+.++...                        .+.++
T Consensus       163 ~~~~--~~g~~g--~~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~  236 (379)
T PRK11658        163 YKGR--HIGARG--TAIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKY  236 (379)
T ss_pred             ECCe--ecCCCC--CEEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccccc
Confidence            2222  122233  3566666  667654  57777664 56655443210                        01123


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccc-eeeEEEEeeC-ccchHHHHHHH
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKK-SINTLILSVS-AILEVYDVCIK  218 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~  218 (266)
                      ..+.+.++.+...++.  -++..++.+++.+.+.+.|++ ++...+.. +...+..+ ..+.+.++.. .+.+..++.+.
T Consensus       237 ~~~~l~AAl~~~ql~~--l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  312 (379)
T PRK11658        237 NLADINAAIALVQLAK--LEALNARRREIAARYLQALAD-LPFQPLSL-PAWPHQHAWHLFIIRVDEERCGISRDALMEA  312 (379)
T ss_pred             CcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC-CCCccCcC-CCCCCceeEEEEEEEECCccccCCHHHHHHH
Confidence            3344444444444433  245678888888888899887 54322211 11001000 0333343321 13467899999


Q ss_pred             HHHCCceeccC-------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         219 MKDAGLVTKPI-------------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       219 l~~~gi~~~~~-------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |.++||.++..                         ....+.+-++...|++++++.++.|++++
T Consensus       313 L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        313 LKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             HHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            99999876521                         11445555567899999999999999875

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.39  E-value=5.7e-12  Score=109.62  Aligned_cols=228  Identities=11%  Similarity=0.026  Sum_probs=136.8

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCcCCcCc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGK   91 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~~~~~~g~   91 (266)
                      ..++.+|..++..|.+++++++  .+++++|++|.+.|+.+.+.    ++++|+++|+++|  +++++|.+++    .+.
T Consensus       123 ~~~Gi~v~~vd~~d~~~l~~~l--~~~TrlV~~EtpsNp~~~v~----DI~~Ia~ia~~~g~g~~lvVDnT~a----~p~  192 (395)
T PRK08114        123 SKLGVTTTWFDPLIGADIAKLI--QPNTKVVFLESPGSITMEVH----DVPAIVAAVRSVNPDAVIMIDNTWA----AGV  192 (395)
T ss_pred             HhcCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCEee----cHHHHHHHHHHhCCCCEEEEECCCc----ccc
Confidence            4568899999999999999999  45789999999999999988    9999999999985  9999999994    122


Q ss_pred             ccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                      .+....+|.+..+.+.+|+++|.- .-.|.++.+++..+.+.......-...+|..+......|+-+  .-..++..+++
T Consensus       193 ~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL--~lR~~~~~~na  270 (395)
T PRK08114        193 LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL--GVRLRQHEESS  270 (395)
T ss_pred             ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH--HHHHHHHHHHH
Confidence            222233455555555889998540 235656666665554432111112234555554444433321  11233444455


Q ss_pred             HHHHHHhhcc-----cccCCCccc---------EEecCccceeeEEEEeeC-ccchHHHHHHHHHH--CCc-------ee
Q psy6547         171 EIFRSELSSP-----ANKSKASFK---------LSSGGLKKSINTLILSVS-AILEVYDVCIKMKD--AGL-------VT  226 (266)
Q Consensus       171 ~~l~~~l~~~-----~~~~~~~~~---------~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~--~gi-------~~  226 (266)
                      ..+.+.|++-     ...+.++..         ..+.|.   ++.|++... +.....+|++.|.=  .+.       ++
T Consensus       271 ~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi  347 (395)
T PRK08114        271 LKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSG---LFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLI  347 (395)
T ss_pred             HHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCce---EEEEEecCcccHHHHHHHHHhCCcceeecccCCcccee
Confidence            5555655540     112222211         124566   999998641 11234556655532  111       11


Q ss_pred             c---c-------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 K---P-------------ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~---~-------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .   |             ..++.||+|..+.    +.+.+++.|+++++.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~liRlSvGlE----d~~DLi~Dl~~Al~~  393 (395)
T PRK08114        348 LANQPEEIAAIRPAGEVDFTGTLIRLHIGLE----DVDDLIADLAAGFAR  393 (395)
T ss_pred             ccCCchhhhccCChhHhcCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence            1   0             1236899995544    566777777777764

>PRK02769 histidine decarboxylase; Provisional

Probab=99.38  E-value=7.9e-11  Score=102.46  Aligned_cols=207  Identities=14%  Similarity=0.128  Sum_probs=140.8

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC---CEEEEeccccCcCC----cCcccccccC
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN---VLFIADEVQTGLGR----TGKLLAIHYE   98 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g---~~li~De~~~~~~~----~g~~~~~~~~   98 (266)
                      |+++|+++++++ +.+.+|+++...+.+|.+-    ++++|.++|++||   +++++|.+|+++-.    ....+.+.. 
T Consensus       146 d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id----pi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-  220 (380)
T PRK02769        146 DYDDLISKIKENKNQPPIIFANIGTTMTGAID----NIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-  220 (380)
T ss_pred             cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC----CHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-
Confidence            899999999653 2478888998999999986    9999999999998   69999999976311    001122221 


Q ss_pred             CCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCc--HHHHHHHHHHHHHHhhc---cHHHHH
Q psy6547          99 DVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGN--PLACKLAMTALDVILEE---NMIENA  166 (266)
Q Consensus        99 ~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~a~~~~l~~~~~~---~~~~~~  166 (266)
                        .+|.++  ..|.++++ .+.|+++.+++..+.+...     ....++.++  .....+...+|+.++.+   +..++.
T Consensus       221 --~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~  297 (380)
T PRK02769        221 --GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHC  297 (380)
T ss_pred             --CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence              466666  55988867 7899998888776655321     011122333  34566777888877664   466778


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  246 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~  246 (266)
                      .++++++.++|++ .+...+..   ...+   ++.|..++      +++.     +|..+.+. .+.+|++++..++++.
T Consensus       298 ~~la~~l~~~L~~-~g~~~~~~---p~~~---~v~f~~~~------~~~~-----~~w~l~~~-~~~~hi~~~~~~~~~~  358 (380)
T PRK02769        298 LDMAQYAVDRLQA-NGIPAWRN---PNSI---TVVFPCPS------ERIW-----KKWHLATS-GNQAHIITMPHHNKQQ  358 (380)
T ss_pred             HHHHHHHHHHHHh-CCCEEEcC---CCce---EEEEcCCC------HHHH-----hCeeEccc-CCEEEEEECCCCCHHH
Confidence            8899999999987 43222211   1122   45554333      1222     56666665 4599999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6547         247 LREGLDIIINTINT  260 (266)
Q Consensus       247 i~~~~~~l~~~~~~  260 (266)
                      +|.+++.|.+.+..
T Consensus       359 ~~~f~~dl~~~~~~  372 (380)
T PRK02769        359 IDSLIDELIFDLKN  372 (380)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887653

>PRK04311 selenocysteine synthase; Provisional

Probab=99.38  E-value=1.1e-10  Score=103.60  Aligned_cols=234  Identities=13%  Similarity=0.122  Sum_probs=143.3

Q ss_pred             CCCCCceeecC---CCHHHHHHHHhcCCCEEEEEEccccCC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPY---NDVDALEAKLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~~~~~~~~--~g--~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.|+.   .+++++++++  +++++++++++..|.  .|  ...    ++++|.++|++||+++++|.....++
T Consensus       190 ~~G~~l~~v~~~~~t~~~dle~aI--~~~TklV~~vh~sN~~i~G~~~~~----dl~eI~~lak~~gi~vivD~gsG~l~  263 (464)
T PRK04311        190 QAGARLVEVGTTNRTHLRDYEQAI--NENTALLLKVHTSNYRIEGFTKEV----SLAELAALGKEHGLPVVYDLGSGSLV  263 (464)
T ss_pred             HCCcEEEEECCCCCCCHHHHHHhc--CccCeEEEEEcCCCccccccCCcC----CHHHHHHHHHHcCCeEEEECCCcccc
Confidence            34667777876   3688999999  557899988877664  34  333    89999999999999999999642222


Q ss_pred             C---cC---cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          88 R---TG---KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        88 ~---~g---~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      .   .|   .+...+.....+|++++|  |+++|+ . .|++++++++++.++.......+...-...++..++|..+..
T Consensus       264 ~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~  341 (464)
T PRK04311        264 DLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLD  341 (464)
T ss_pred             cchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhC
Confidence            1   11   111112223467888877  999876 3 888899999888776433333333344455555555653321


Q ss_pred             c--cH------------HHHHHHHHHHHHHHhhcccccC-CCcc----cEEecCc----cceeeEEEEeeCccchHHHHH
Q psy6547         160 E--NM------------IENAYKMGEIFRSELSSPANKS-KASF----KLSSGGL----KKSINTLILSVSAILEVYDVC  216 (266)
Q Consensus       160 ~--~~------------~~~~~~~~~~l~~~l~~~~~~~-~~~~----~~~~~g~----~~~~~~~~~~~~~~~~~~~~~  216 (266)
                      .  .+            .++..+++..+.+.|+...+.. .+..    ..-|.|.    +.|-+.+.+... +.++.++.
T Consensus       342 ~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-~~~~~~l~  420 (464)
T PRK04311        342 PEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-DRSLEALA  420 (464)
T ss_pred             hhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-CCCHHHHH
Confidence            1  01            1444556666666665511100 0010    0011121    124455555432 35688999


Q ss_pred             HHHHHC--CceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         217 IKMKDA--GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       217 ~~l~~~--gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ++|++-  .|+.+.. .+.+.+-+. ...++|++.++++|.+.+.
T Consensus       421 ~~lr~~~~~i~~r~~-~~~~~ld~r-~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        421 ARLRLLPPPVIGRIE-DGRLLLDLR-TLEEEDEERLAAALLEALN  463 (464)
T ss_pred             HHHhcCCCCEEEEEE-CCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence            999874  5666543 677777654 5688899999999988764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.37  E-value=2.3e-11  Score=104.06  Aligned_cols=234  Identities=17%  Similarity=0.240  Sum_probs=149.5

Q ss_pred             CCcCcccccCCCCCCceeecCC-CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      +|+....+..|...+|..-.+| |++.+|+.|  .+++++|+.....+.   .+    ++++|.++|++||++||+|.+|
T Consensus        88 an~i~~~Ga~PVFvDid~~T~nid~~~ie~aI--t~~tKAIipVhl~G~---~~----dm~~i~~la~~~~l~vIEDaAq  158 (374)
T COG0399          88 ANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAI--TPRTKAIIPVHLAGQ---PC----DMDAIMALAKRHGLPVIEDAAQ  158 (374)
T ss_pred             HHHHHHcCCeEEEEecCCcccCCCHHHHHHHc--ccCCeEEEEehhccC---CC----CHHHHHHHHHHcCCeEEEEcch
Confidence            3344444455555555544455 899999999  556999998887754   33    8999999999999999999999


Q ss_pred             cCcCCcCcccccccCCCCcCeeeec----ccccCCchhhhhhee-cHHhhhccCCC----------------CCCCCCCC
Q psy6547          84 TGLGRTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLA-DDEVMGTLVPG----------------THGSTYGG  142 (266)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~----------------~~~~~~~~  142 (266)
                      + +   |..+--+..|-.-|+.+||    |.++.|  -.|.++. ++++.+.++..                ..+..+-.
T Consensus       159 a-~---Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm  232 (374)
T COG0399         159 A-H---GATYKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRL  232 (374)
T ss_pred             h-c---cCeecCcccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCH
Confidence            4 3   2222222334445666655    988855  3555665 44555555321                12333444


Q ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEe---cCccceeeEEEEeeCccchHHHHHHHH
Q psy6547         143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS---GGLKKSINTLILSVSAILEVYDVCIKM  219 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~l  219 (266)
                      +-+.++.++.-|+.+  +++.++-+++.+.+.+.|++ +....++....+   .-.   ++.+.+++. +.+.+.+.+.|
T Consensus       233 ~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~---~~~i~~~~~-~~~R~~l~~~L  305 (374)
T COG0399         233 TEIQAAIGLAQLERL--DEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWH---LYTILVDEE-GISRDALMESL  305 (374)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeee---eeEEEecCC-CCCHHHHHHHH
Confidence            555555555555433  55778888888889988887 543222221111   122   333444432 35678899999


Q ss_pred             HHCCcee----ccC-----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         220 KDAGLVT----KPI-----------------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       220 ~~~gi~~----~~~-----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .++||..    .|.                       ....+.+-++...+++++++.++.|++++..
T Consensus       306 ~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         306 KEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            9996653    231                       1256778778899999999999999998754

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.37  E-value=8.5e-12  Score=110.31  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=75.4

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++..|++++++++  .+++++|+++.+.|++|.+.    ++++|.++|+++|+++|+|+++.. +....  
T Consensus       125 ~~~Gv~v~~vd~~d~e~l~~ai--~~~tklV~l~sp~NPtG~v~----di~~I~~la~~~gi~vIvD~t~a~-~~~~~--  195 (431)
T PRK08248        125 PKLGITVKFVDPSDPENFEAAI--TDKTKALFAETIGNPKGDVL----DIEAVAAIAHEHGIPLIVDNTFAS-PYLLR--  195 (431)
T ss_pred             HhCCEEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEeCCCCc-cccCC--
Confidence            3467889999998999999999  44689999998888999887    789999999999999999999841 11111  


Q ss_pred             ccccCCCCcCeeeecccccC-Cchhhhhhee
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPISAVLA  123 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~  123 (266)
                      .. .+|.+..+.+++|+++| | .++|+++.
T Consensus       196 pl-~~gaDivv~S~tK~lgg~g-~~~Gg~v~  224 (431)
T PRK08248        196 PI-EHGADIVVHSATKFIGGHG-TSIGGVIV  224 (431)
T ss_pred             hh-HcCCCEEEEcCccccCCCC-CceEEEEE
Confidence            11 24555555558899994 4 56776555

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.36  E-value=6.6e-11  Score=104.42  Aligned_cols=221  Identities=12%  Similarity=0.079  Sum_probs=144.4

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc------CCEEEEeccccCcCC---cCc-ccccc
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR---TGK-LLAIH   96 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~------g~~li~De~~~~~~~---~g~-~~~~~   96 (266)
                      |+++|+++|+  +++.+|++...++.+|.+-    ++++|.++|+++      |+++++|.+|+|+..   .+. .+.+.
T Consensus       175 d~~~L~~~i~--~~t~lV~~t~g~t~tG~id----pi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~  248 (431)
T TIGR01788       175 DPEQVVEAVD--ENTIGVVCILGTTYTGEYE----DVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR  248 (431)
T ss_pred             CHHHHHHHHh--hCCeEEEEEeCCCCCcccC----CHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC
Confidence            7899999994  4578899999999999986    999999999999      999999999976310   121 12222


Q ss_pred             cCCCCcCeee--ecccccCCchhhhhheecHH--hhhccCC---CCC----CCCCCCcHH--HHHHHHHHHHHHhh---c
Q psy6547          97 YEDVRPDIVI--LGKALSGGLYPISAVLADDE--VMGTLVP---GTH----GSTYGGNPL--ACKLAMTALDVILE---E  160 (266)
Q Consensus        97 ~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~---~~~----~~~~~~~~~--~~~a~~~~l~~~~~---~  160 (266)
                      ..  .+|.++  ..|++.++ ...|+++.+++  +.+.+..   +..    ..++..+..  ........|..+..   +
T Consensus       249 ~~--~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~  325 (431)
T TIGR01788       249 LP--RVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYR  325 (431)
T ss_pred             CC--CceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHH
Confidence            22  345555  55987555 67888877653  2222210   110    112222322  22334444444444   3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHHHCCceec----cC---CC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMKDAGLVTK----PI---SN  231 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~----~~---~~  231 (266)
                      ++.++..++.+++.++|++ .+.  +.. . +.+...+++.|.+...+  +.+..++.++|.++|+.+.    |.   +.
T Consensus       326 ~i~~~~~~la~~l~~~L~~-~~~--~el-~-~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~  400 (431)
T TIGR01788       326 KIMQNSLDVARYLAEEIAK-LGP--FEI-I-SDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDI  400 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCC--EEE-e-eCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCe
Confidence            4677788899999999987 442  211 1 10012237778776421  3467889999999999752    22   33


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++|++.....+++.++.+++.|.+++..+
T Consensus       401 ~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       401 VVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            578999888889999999999999988764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.35  E-value=1.2e-11  Score=109.48  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++++  ++++++|++++++|++|.+.    ++++|.++|+++|+++|+|++++.    +.  
T Consensus       124 ~~~G~~v~~vd~~d~~~l~~ai--~~~tklV~vesp~NptG~v~----dl~~I~~la~~~gi~livD~a~a~----~~--  191 (427)
T PRK05994        124 KSFGWQVRWADADDPASFERAI--TPRTKAIFIESIANPGGTVT----DIAAIAEVAHRAGLPLIVDNTLAS----PY--  191 (427)
T ss_pred             HhcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCccc----cc--
Confidence            4467788899888999999999  45789999999999999887    799999999999999999999952    11  


Q ss_pred             ccccCCCCcCeee--ecccccCCchhhhhhe
Q psy6547          94 AIHYEDVRPDIVI--LGKALSGGLYPISAVL  122 (266)
Q Consensus        94 ~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~  122 (266)
                      ........+|+++  ++|.++|..-.+|.++
T Consensus       192 ~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v  222 (427)
T PRK05994        192 LIRPIEHGADIVVHSLTKFLGGHGNSMGGII  222 (427)
T ss_pred             cCCccccCCcEEEEcCccccCCCCCcEEEEE
Confidence            1112233455544  8899984212345443

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.32  E-value=3.7e-10  Score=100.23  Aligned_cols=213  Identities=18%  Similarity=0.190  Sum_probs=130.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      |++++++.+  .+++++|++++..+   ..    .++++|.++|++||++||+|++|+ +|   ..+.-...|-..|+.+
T Consensus       148 d~~~le~~i--~~~tkaVi~~~~~G---~p----~dl~~I~~la~~~gi~vIeDaa~a-~G---~~~~g~~~G~~gd~~~  214 (438)
T PRK15407        148 DASLLEAAV--SPKTKAIMIAHTLG---NP----FDLAAVKAFCDKHNLWLIEDNCDA-LG---STYDGRMTGTFGDIAT  214 (438)
T ss_pred             CHHHHHHHc--CcCCeEEEEeCCCC---Ch----hhHHHHHHHHHHCCCEEEEECccc-hh---hhcCCeeeeccCceEE
Confidence            789999988  45789999887543   22    389999999999999999999994 22   1111011222235666


Q ss_pred             ec----ccccCCchhhhhheecHH-hhhccCCC---------------------------------------CCCCCCCC
Q psy6547         107 LG----KALSGGLYPISAVLADDE-VMGTLVPG---------------------------------------THGSTYGG  142 (266)
Q Consensus       107 ~s----K~~~~g~~~~g~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~  142 (266)
                      ||    |.+.+|  ..|+++.+.+ +.+.++..                                       ..+..+..
T Consensus       215 fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm  292 (438)
T PRK15407        215 LSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI  292 (438)
T ss_pred             EeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence            55    667755  2577776543 33222100                                       02334456


Q ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccce--eeEEEEeeCccchHHHHHHHH
Q psy6547         143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKS--INTLILSVSAILEVYDVCIKM  219 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~l  219 (266)
                      +.+.++.+...|+.+  ++..++.+++.+++.+.|.. +.. ...+. ...... ..  .+.+.+.+..+.+..++++.|
T Consensus       293 sel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~~Rd~l~~~L  367 (438)
T PRK15407        293 TDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLAS-LEDFLILPE-ATPNSD-PSWFGFPITVKEDAGFTRVELVKYL  367 (438)
T ss_pred             cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCCccccCc-CCCCCe-eEEEEEEEEECCcCCCCHHHHHHHH
Confidence            777777777777654  44677777888888888876 432 11211 111111 00  233333331134578999999


Q ss_pred             HHCCceeccCC----------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         220 KDAGLVTKPIS----------------------------NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       220 ~~~gi~~~~~~----------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .++||.+++..                            ...+-+-++...+++++++.++.|+++++
T Consensus       368 ~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        368 EENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             HHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999764210                            02244444556799999999999999875

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.30  E-value=7.5e-11  Score=104.35  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLL   93 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~~   93 (266)
                      .++.++++++.+|++++++++  .+++++|+++.+.|++|.+.    ++++|.++|+++|+++|+|.++. ++  ...  
T Consensus       126 ~~Gi~v~~vd~~d~~~l~~~i--~~~TklV~~e~~~np~g~v~----Di~~I~~la~~~gi~livD~t~a~~~--~~~--  195 (433)
T PRK08134        126 RFGIETTFVKPGDIDGWRAAI--RPNTRLLFGETLGNPGLEVL----DIPTVAAIAHEAGVPLLVDSTFTTPY--LLR--  195 (433)
T ss_pred             hCCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCcccCccc----CHHHHHHHHHHcCCEEEEECCCcccc--cCC--
Confidence            357788899888999999999  56789999999988888887    89999999999999999999994 22  111  


Q ss_pred             ccccCCCCcCeeeecccccC
Q psy6547          94 AIHYEDVRPDIVILGKALSG  113 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~  113 (266)
                      .. .+|.+..+.+.+|.++|
T Consensus       196 pl-~~GaD~vv~S~tK~l~g  214 (433)
T PRK08134        196 PF-EHGADLVYHSATKFLGG  214 (433)
T ss_pred             ch-hcCCCEEEeccccccCC
Confidence            11 23444444557799884

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.30  E-value=1.5e-11  Score=103.88  Aligned_cols=146  Identities=12%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc--cccCCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA--IHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~--~~~~~~~~d  103 (266)
                      .|++++++.+++++++++++++.+ +.+|.+.    ++++|.++|+++|+++++||+|......+..+.  ....+.+..
T Consensus       140 i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~----dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div  214 (294)
T cd00615         140 IPPETFKKALIEHPDAKAAVITNP-TYYGICY----NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIV  214 (294)
T ss_pred             CCHHHHHHHHHhCCCceEEEEECC-CCCCEec----CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEE
Confidence            379999999976667888777643 4578876    799999999999999999999964212221111  222344444


Q ss_pred             eeeecccccCCchhhh-hheecHHhh--hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHh
Q psy6547         104 IVILGKALSGGLYPIS-AVLADDEVM--GTLVP-GTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  177 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l  177 (266)
                      +.+++|+++|  ++.| ++..+.+..  +.+.. .....+.+++.+.+++...+++.+..  +++.+++.++.+.+++++
T Consensus       215 ~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l  292 (294)
T cd00615         215 VQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEI  292 (294)
T ss_pred             EEchhcccch--HhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4558899854  5554 444443311  11111 12334556777788888888877654  346777888888888776


Q ss_pred             h
Q psy6547         178 S  178 (266)
Q Consensus       178 ~  178 (266)
                      .
T Consensus       293 ~  293 (294)
T cd00615         293 N  293 (294)
T ss_pred             h
Confidence            5

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.29  E-value=4.9e-10  Score=99.32  Aligned_cols=230  Identities=12%  Similarity=0.104  Sum_probs=137.8

Q ss_pred             CCCCCCceeecC---CCHHHHHHHHhcCCCEEEEEEccccCC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          14 GPHMPGYNIIPY---NDVDALEAKLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~~~~~~~~--~g--~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ...+.+++++++   .+++++++++  +++++++++++..|.  .|  ...    ++++|+++|++||+++++|.+..-+
T Consensus       184 ~~~G~~~~~v~~~~~~~l~dle~aI--~~~T~lv~~~h~sN~~~~G~~~~~----dl~~I~~la~~~g~~vivD~~sG~l  257 (454)
T TIGR00474       184 EQSGAKLVEVGTTNRTHLKDYEDAI--TENTALLLKVHTSNYRIVGFTEEV----SIAELVALGREHGLPVMEDLGSGSL  257 (454)
T ss_pred             HHcCCEEEEeCCCCCCCHHHHHHhc--CcCCEEEEEEccCcccccCCCCCC----CHHHHHHHHHHcCCeEEEECCCccc
Confidence            345778888876   4689999999  567899888877554  34  244    8999999999999999999764222


Q ss_pred             CCcC------cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          87 GRTG------KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        87 ~~~g------~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +..+      .+...+......|++++|  |+++|+ . .|++++++++++.++.......+...-+..++..+++..+.
T Consensus       258 ~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~  335 (454)
T TIGR00474       258 VDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYL  335 (454)
T ss_pred             ccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHh
Confidence            2111      111122233467899888  999876 3 78899998888776643332223333334445555554432


Q ss_pred             hcc--H------------HHHHHHHHHHHHHHhhccccc----CCCccc-EEecC----ccceeeEEEEeeCccchHHHH
Q psy6547         159 EEN--M------------IENAYKMGEIFRSELSSPANK----SKASFK-LSSGG----LKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       159 ~~~--~------------~~~~~~~~~~l~~~l~~~~~~----~~~~~~-~~~~g----~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      ...  +            .++..+++..+.+.|++.++.    ...... .-|.|    .+.|-+.+.+... +.++.++
T Consensus       336 ~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-~~~~~~l  414 (454)
T TIGR00474       336 DPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-GLSAEKL  414 (454)
T ss_pred             CchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-CCCHHHH
Confidence            211  1            124455666666666652110    011110 01112    1124455555432 4568899


Q ss_pred             HHHHHHCC--ceeccCCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         216 CIKMKDAG--LVTKPISNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       216 ~~~l~~~g--i~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      .++|++..  |+.+.. .+.+.+-+. +..++|++.++++|
T Consensus       415 ~~~lr~~~~~ii~r~~-~~~~~ld~r-~~~~~~~~~~~~~~  453 (454)
T TIGR00474       415 EARLRELPPPIIGRIE-DDRFLLDLR-TLLEDEEELLIEAL  453 (454)
T ss_pred             HHHHhcCCCCEEEEEE-CCEEEEEeC-cCCHHHHHHHHHHh
Confidence            99998765  666543 666666654 45778888888776

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02880 tyrosine decarboxylase

Probab=99.29  E-value=2.1e-10  Score=102.93  Aligned_cols=225  Identities=11%  Similarity=0.082  Sum_probs=138.0

Q ss_pred             CHHHHHHHHhcC---C-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-C
Q psy6547          27 DVDALEAKLKSN---P-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-R  101 (266)
Q Consensus        27 d~~~l~~~l~~~---~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~  101 (266)
                      |+++|++.|+++   . .+.+|+.+-...++|.+-    ++++|+++|++||++++||.+|.|+......+.....|+ .
T Consensus       222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD----pl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~  297 (490)
T PLN02880        222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD----PLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEE  297 (490)
T ss_pred             CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC----cHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchh
Confidence            799999999652   1 345555555566667764    999999999999999999999976422211111122343 4


Q ss_pred             cCeee--ecccccCCchhhhhheecHH--hhhccCCC---C-C----------CCCC---CCcHHHHHHHHHHHHHHhhc
Q psy6547         102 PDIVI--LGKALSGGLYPISAVLADDE--VMGTLVPG---T-H----------GSTY---GGNPLACKLAMTALDVILEE  160 (266)
Q Consensus       102 ~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~~---~-~----------~~~~---~~~~~~~~a~~~~l~~~~~~  160 (266)
                      +|-++  ..|++..+ +..|+++.+..  +.+.+...   . .          ...+   .+.+........+++.++.+
T Consensus       298 aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~  376 (490)
T PLN02880        298 ADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE  376 (490)
T ss_pred             cCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHH
Confidence            55555  78999977 77887776532  21222110   0 0          0000   12222344455567777777


Q ss_pred             cHHHHHH---HHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc--c----hHHHHHHHHHHCCce-ecc-
Q psy6547         161 NMIENAY---KMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI--L----EVYDVCIKMKDAGLV-TKP-  228 (266)
Q Consensus       161 ~~~~~~~---~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~--~----~~~~~~~~l~~~gi~-~~~-  228 (266)
                      ++.+++.   ++++++.+.+++ ... ..+.   +....   ++.|.++....  .    -..++.++|.+.|-+ +.. 
T Consensus       377 g~~~~i~~~~~lA~~~~~~l~~-~~~~el~~---~~~~~---iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t  449 (490)
T PLN02880        377 NLQSYIRNHIKLAKEFEQLVAQ-DSRFEVVT---PRIFS---LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHT  449 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCEEEec---CCceE---EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEE
Confidence            7777777   899999988877 322 1111   11122   67777653110  0    124566777666444 332 


Q ss_pred             --CCCCEEEEeccCCCC-HHHHHHHHHHHHHHHHHHhh
Q psy6547         229 --ISNNIIRLSPALNIT-EQELREGLDIIINTINTMAA  263 (266)
Q Consensus       229 --~~~~~iR~~~~~~~t-~~~i~~~~~~l~~~~~~~~~  263 (266)
                        .+..++|+++....| ++|++.+++.|.+..+++..
T Consensus       450 ~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        450 VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              256799999865555 69999999999998887654

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.29  E-value=1.7e-10  Score=101.62  Aligned_cols=219  Identities=12%  Similarity=0.119  Sum_probs=123.8

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-CcC
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPD  103 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~~d  103 (266)
                      |+++|+++|...  +.+.+++.+|....+    ...+++++|.++|++||+++|+|++|......-..+....... ..|
T Consensus       190 D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~----g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad  265 (444)
T TIGR03531       190 DVEDIERAIEEIGPDNILCVLSTTSCFAP----RSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVD  265 (444)
T ss_pred             CHHHHHHHHHhccCCCEEEEEEcCCcCCC----cchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCC
Confidence            899999999642  233334334332222    3456999999999999999999999953211100010011111 234


Q ss_pred             eee--ecccccC-Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547         104 IVI--LGKALSG-GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  176 (266)
Q Consensus       104 ~~~--~sK~~~~-g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~  176 (266)
                      .++  ++|.+.. | + .|.++. ++++.+.+........  .+...+.+....+. +..   +++.++..++++++.+.
T Consensus       266 ~vv~s~hK~l~~pg-~-Gg~I~~~d~el~~~i~~~y~g~~--~~s~~~~~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~  340 (444)
T TIGR03531       266 AVVSSTDKNFMVPV-G-GAIIYSFDENFIQEISKSYPGRA--SASPSLDVLITLLS-LGSKGYLELLKERKEMYKYLKEL  340 (444)
T ss_pred             eEEEeCccCCCCCC-C-EEEEEECCHHHHHHHHHhccCCC--CChHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHH
Confidence            444  7799884 4 2 444545 6677766654222211  22234444433333 222   45777788889999999


Q ss_pred             hhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce----eccCC--------------------C
Q psy6547         177 LSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV----TKPIS--------------------N  231 (266)
Q Consensus       177 l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~----~~~~~--------------------~  231 (266)
                      |.+ +.. .+... .....++. -+.+.+....+.+...+...|..++|-    +.++.                    .
T Consensus       341 L~~-l~~~~~~~~-~~~~~n~i-s~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
T TIGR03531       341 LQK-LAERHGERL-LDTPENPI-SSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPC  417 (444)
T ss_pred             HHH-HHHhhCcEe-ecCCCCce-eEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCc
Confidence            988 542 22211 11111200 123333311133577788888888773    22221                    1


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .++-++.....+++|+|.++++|++.
T Consensus       418 ~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       418 PYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             hhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            25666667889999999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.28  E-value=4.4e-11  Score=105.74  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             CCCCceeec-CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          16 HMPGYNIIP-YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        16 ~~~~v~~~~-~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ++.+++.++ ..|++++++++  .+++++|+++.+.|+.|.+.    ++++|.++|+++|+++|+|+++.. +....  .
T Consensus       132 ~Gi~v~~vdd~~d~e~l~~ai--~~~tklV~ie~~sNp~G~v~----Dl~~I~~la~~~gi~liVD~t~a~-~~~~~--p  202 (436)
T PRK07812        132 LGIEVSFVEDPDDLDAWRAAV--RPNTKAFFAETISNPQIDVL----DIPGVAEVAHEAGVPLIVDNTIAT-PYLIR--P  202 (436)
T ss_pred             CeEEEEEECCCCCHHHHHHhC--CCCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCcc-cccCC--c
Confidence            566777775 45889999888  45789999999999999998    999999999999999999999842 11111  1


Q ss_pred             cccCCCCcCeeeeccccc
Q psy6547          95 IHYEDVRPDIVILGKALS  112 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~  112 (266)
                      . .+|.+..+.+++|.++
T Consensus       203 l-~~GaDivv~S~tK~lg  219 (436)
T PRK07812        203 L-EHGADIVVHSATKYLG  219 (436)
T ss_pred             h-hcCCCEEEEecccccC
Confidence            1 2355555566889998

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.27  E-value=9.4e-10  Score=95.64  Aligned_cols=208  Identities=19%  Similarity=0.252  Sum_probs=129.4

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      |++++++++  .+++++|++.+..+.   ..    ++++|.++|+++|++||.|.+|+ +   |..+.-...|-.-|+.+
T Consensus       102 d~~~~~~~i--~~~t~ai~~~h~~G~---~~----d~~~i~~~~~~~~i~lIeD~a~a-~---g~~~~g~~~G~~gd~~~  168 (363)
T PF01041_consen  102 DPEALEKAI--TPKTKAILVVHLFGN---PA----DMDAIRAIARKHGIPLIEDAAQA-F---GARYKGRPVGSFGDIAI  168 (363)
T ss_dssp             -HHHHHHHH--HTTEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-T---T-EETTEETTSSSSEEE
T ss_pred             CHHHHHHHh--ccCccEEEEecCCCC---cc----cHHHHHHHHHHcCCcEEEccccc-c---CceeCCEeccCCCCceE
Confidence            799999999  557899999887753   22    89999999999999999999995 2   22111122344457777


Q ss_pred             ec----ccccCCchhhhhheecH-HhhhccCC---C-------------C-CCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547         107 LG----KALSGGLYPISAVLADD-EVMGTLVP---G-------------T-HGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus       107 ~s----K~~~~g~~~~g~~~~~~-~~~~~~~~---~-------------~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      ||    |.+++|  -.|+++.+. ++.+.++.   .             . .+..+..+.+.++.+...|+.+  +...+
T Consensus       169 fSf~~~K~i~~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~  244 (363)
T PF01041_consen  169 FSFHPTKIITTG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIA  244 (363)
T ss_dssp             EESSTTSSS-SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHH
T ss_pred             ecCCCCCCCcCC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHH
Confidence            66    999855  256677654 44444321   1             0 2345567777777777766544  44567


Q ss_pred             HHHHHHHHHHHHhhcccccC---CCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----------
Q psy6547         165 NAYKMGEIFRSELSSPANKS---KASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----------  230 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~---~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------  230 (266)
                      +.+++.+.+++.|.. ....   ....... ....   .+.+.+++....+.+++.+.|.++||.+.+..          
T Consensus       245 ~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~---~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~  320 (363)
T PF01041_consen  245 RRRENAQRYREALAG-IPGIKPPPIPDGAERSSYY---RFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVY  320 (363)
T ss_dssp             HHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCES---SEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGG
T ss_pred             HHHHHHHHHHHHHhc-CCCcccccccccccccccc---cccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHH
Confidence            777888889899888 5421   1111011 2222   34555554211357889999999999887531          


Q ss_pred             ------------------CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         231 ------------------NNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       231 ------------------~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                                        ...+.+-.+...++++++++++.|+
T Consensus       321 ~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  321 RSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             TTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             HhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence                              1446677778899999999998875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.26  E-value=7.1e-11  Score=101.72  Aligned_cols=224  Identities=16%  Similarity=0.118  Sum_probs=132.4

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ++-++.++..++..+.+++++.+.+ +++++|++|++.|+.--+.    ++++|+++|+++|+.+|+|+++..      +
T Consensus       123 l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~----DI~~i~~~A~~~g~~vvVDNTfat------P  191 (396)
T COG0626         123 LQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVP----DIPAIARLAKAYGALVVVDNTFAT------P  191 (396)
T ss_pred             HHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCcccccc----cHHHHHHHHHhcCCEEEEECCccc------c
Confidence            3457888888888788788877733 5899999999999887777    999999999999999999999942      1


Q ss_pred             cccccC--CCCcCeeeecccccCCchh--hhhheecH-HhhhccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          93 LAIHYE--DVRPDIVILGKALSGGLYP--ISAVLADD-EVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        93 ~~~~~~--~~~~d~~~~sK~~~~g~~~--~g~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      ..++.+  |.+..+.+.+|.++|. --  .|.++++. ++.+.+.. .....-...+|..+-..+..|+-+.-  ..++.
T Consensus       192 ~~q~PL~~GaDIVvhSaTKyl~GH-sDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~--Rm~~~  268 (396)
T COG0626         192 VLQRPLELGADIVVHSATKYLGGH-SDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLAL--RMERH  268 (396)
T ss_pred             cccChhhcCCCEEEEeccccccCC-cceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHH--HHHHH
Confidence            122333  4444445588999964 22  34455444 44444311 11112222445555444444433211  22333


Q ss_pred             HHHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----
Q psy6547         167 YKMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----  227 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----  227 (266)
                      .+++..+.+.|++ -+      .+..+.         ...+.|.   +++|++..  +.+..+|.+.|.--.+..+    
T Consensus       269 ~~nA~~IA~~L~~-~p~V~~V~yPgl~shp~he~~~rq~~g~gg---~~Sf~l~~--~~~~~~f~~~L~l~~~a~SlGgv  342 (396)
T COG0626         269 NENALKIAEFLAD-HPKVKKVYYPGLPSHPGHELAKRQMTGYGG---LFSFELKN--EEAAKKFLDSLKLFKLAESLGGV  342 (396)
T ss_pred             HHHHHHHHHHHhc-CCCeEEEECCCCCCCCcHHHHHHhcCCCce---EEEEEeCC--hHHHHHHHHhCCccEEeccCCCc
Confidence            3344444444443 11      122111         0124567   99999988  4345666666653222111    


Q ss_pred             ------cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 ------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 ------~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                            |.                 ..+.+|+|..+.    +++.+++.|+.+++.
T Consensus       343 eSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlE----d~eDLi~Dl~~Al~~  394 (396)
T COG0626         343 ESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLE----DVEDLIADLEQALAK  394 (396)
T ss_pred             ccccccccccCcccCCHhHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHHh
Confidence                  10                 247899995544    566677777777665

>PRK15029 arginine decarboxylase; Provisional

Probab=99.26  E-value=8.3e-10  Score=102.57  Aligned_cols=224  Identities=13%  Similarity=0.076  Sum_probs=142.2

Q ss_pred             CHHHHHHHHhcCCCEE--------EEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc-c
Q psy6547          27 DVDALEAKLKSNPNIC--------AFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-H   96 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~--------~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~-~   96 (266)
                      +++.+++.+++++..+        +++ ++|.+  .|.+.    ++++|+++|+++|++|++||+|.+....+..+.. .
T Consensus       291 ~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~----di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~s  364 (755)
T PRK15029        291 QPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCY----NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHY  364 (755)
T ss_pred             CHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceee----CHHHHHHHHHhcCCeEEEECccccccccCccccccc
Confidence            4899999998876554        444 55555  67776    9999999999999999999999664333433331 2


Q ss_pred             cC-----C-CCcC-eee--ecccccCCchhhhhheecHH--hh--hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547          97 YE-----D-VRPD-IVI--LGKALSGGLYPISAVLADDE--VM--GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---  159 (266)
Q Consensus        97 ~~-----~-~~~d-~~~--~sK~~~~g~~~~g~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---  159 (266)
                      ..     . ..+| +++  ..|.+++= -..+++..+..  .+  +.++. ....+|.++|.+.++....+.+.++.   
T Consensus       365 a~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G  443 (755)
T PRK15029        365 AMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG  443 (755)
T ss_pred             cccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh
Confidence            11     1 3566 555  66988752 23344544222  11  11221 23556667888888888888887764   


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccC---------------CCc-----------------------ccEEe-----cCcc
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKS---------------KAS-----------------------FKLSS-----GGLK  196 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~---------------~~~-----------------------~~~~~-----~g~~  196 (266)
                      +.++++..+....+++.+.+ +...               .+.                       ....+     .|.+
T Consensus       444 ~~l~~~~i~~~~~~r~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  522 (755)
T PRK15029        444 LSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFK  522 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccccccccccccccccCccccccccccccccccccchhhhccccceeeecccccccCcc
Confidence            34677778888888888866 3210               000                       00000     0000


Q ss_pred             ---------ce-eeEEEEeeCccch---------HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         197 ---------KS-INTLILSVSAILE---------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       197 ---------~~-~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                               -| =+.+.++.. +.+         +..+.+.|.++||.+.-.+...+-+-++...+++++++++++|.++
T Consensus       523 ~~~~~~~~lDp~Klti~~~~~-g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~  601 (755)
T PRK15029        523 DLPDNWSMLDPIKVSILAPGM-GEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSF  601 (755)
T ss_pred             cccccccccCCceEEEEcCCC-CCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                     00 122222111 222         3378999989999999888888888888899999999999999877


Q ss_pred             HH
Q psy6547         258 IN  259 (266)
Q Consensus       258 ~~  259 (266)
                      .+
T Consensus       602 ~~  603 (755)
T PRK15029        602 KR  603 (755)
T ss_pred             HH
Confidence            44

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.24  E-value=1.1e-10  Score=97.81  Aligned_cols=237  Identities=18%  Similarity=0.215  Sum_probs=153.7

Q ss_pred             CCccCCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547           1 MLITTDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ   72 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~   72 (266)
                      +|..+||+-...|...+.+|...||-       |.+.+-+.|++-+ +..+++-...|||+|.- ++.+.+++|.++.++
T Consensus       125 is~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D-~t~~qW~~l~~~~~~  203 (396)
T COG1448         125 ISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGID-PTEEQWQELADLIKE  203 (396)
T ss_pred             eCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence            46677777778899999999999975       4566666665544 44455555579999977 999999999999999


Q ss_pred             cCCEEEEeccccCcCCcCcccccccCC------CCcCee---eeccccc-CCchhhhhhe--e-cHHhhhccCCC---CC
Q psy6547          73 YNVLFIADEVQTGLGRTGKLLAIHYED------VRPDIV---ILGKALS-GGLYPISAVL--A-DDEVMGTLVPG---TH  136 (266)
Q Consensus        73 ~g~~li~De~~~~~~~~g~~~~~~~~~------~~~d~~---~~sK~~~-~g~~~~g~~~--~-~~~~~~~~~~~---~~  136 (266)
                      .|.+-++|=+|-||+..   ...+.++      ..+.+.   ++||.|+ =| -|+|+..  + +++..+.+...   ..
T Consensus       204 r~lip~~D~AYQGF~~G---leeDa~~lR~~a~~~~~~lva~S~SKnfgLYg-ERVGa~~vva~~~~~a~~v~sqlk~~i  279 (396)
T COG1448         204 RGLIPFFDIAYQGFADG---LEEDAYALRLFAEVGPELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKAII  279 (396)
T ss_pred             cCCeeeeehhhhhhccc---hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhh-hccceeEEEeCCHHHHHHHHHHHHHHH
Confidence            99999999999888532   2222222      123232   2999999 56 7888743  2 33333333211   12


Q ss_pred             CCCCCCcH-HHHHHHHHHHHH------Hhh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEee
Q psy6547         137 GSTYGGNP-LACKLAMTALDV------ILE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSV  206 (266)
Q Consensus       137 ~~~~~~~~-~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~  206 (266)
                      .++|+..| -++..+...|+.      |+.  +++++++.+.+..+.+.|+. .+. ..+..-....|+    |.+.   
T Consensus       280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~-~~~~~~f~~i~~Q~GM----Fsy~---  351 (396)
T COG1448         280 RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKA-LGAPRNFDFIISQRGM----FSYT---  351 (396)
T ss_pred             HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcccchHhhcCce----eecC---
Confidence            23332222 234444444321      222  36888899999999999988 432 334431334554    4444   


Q ss_pred             CccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         207 SAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       207 ~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                        +.+.+.+.....+.||++...+    |+++. ..++..++.+++.|.++
T Consensus       352 --Gls~~QV~rLree~~IY~v~sG----Ri~va-Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         352 --GLSPEQVDRLREEFGIYLVASG----RINVA-GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             --CCCHHHHHHHHHhccEEEecCC----eeeec-cCChhhHHHHHHHHHhh
Confidence              3455666655567899988765    77766 55888999999988765

>PLN02452 phosphoserine transaminase

Probab=99.24  E-value=5.5e-10  Score=96.57  Aligned_cols=203  Identities=11%  Similarity=0.050  Sum_probs=143.5

Q ss_pred             hcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCc
Q psy6547          36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL  115 (266)
Q Consensus        36 ~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~  115 (266)
                      +.+++.+.+.+.++.+.+|....   +++++.      ++++|+|-+.+ +  .+.+..++.+++  ++.+..|++| . 
T Consensus       141 ~~~~~~~~v~~~hnETstGv~~~---~~~~i~------~~~lvVDa~Ss-~--g~~pidv~~~~v--~~~saqK~lG-P-  204 (365)
T PLN02452        141 ELTPDAKFVHICANETIHGVEFK---DYPDVG------NVPLVADMSSN-F--LSKPVDVSKYGV--IYAGAQKNVG-P-  204 (365)
T ss_pred             CCCCCCcEEEECCCCCCCcEecC---cccccC------CCeEEEECCcc-c--cCcccCHHHcCE--EEEecccccC-C-
Confidence            34557889999999888898421   344443      38999998885 3  234445555664  6677889997 2 


Q ss_pred             hhhhhheecHHhhhccCCC-----------CCCCC-CCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhc
Q psy6547         116 YPISAVLADDEVMGTLVPG-----------THGST-YGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       116 ~~~g~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~  179 (266)
                      ..+|+++.++++++.....           ...++ ++++.....+...+|+++.++    .+.++.+++.+++++.|++
T Consensus       205 ~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~  284 (365)
T PLN02452        205 SGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE  284 (365)
T ss_pred             CCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence            3388899999988765432           11122 366666788888999988764    4778888899999999987


Q ss_pred             cccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         180 PANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       180 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      ..+.  ..... ......   .+.|.+++.  ...++|.+.++++|++..++.  .+.+|+++.-.++.++++++++.++
T Consensus       285 ~~G~y~~~~~~-~~rs~~---~vsF~~~~~--~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~  358 (365)
T PLN02452        285 SNGFYVCPVEK-SVRSLM---NVPFTLGGS--ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMK  358 (365)
T ss_pred             CCCcccCCCCh-HHhCCe---EEEEEcCCc--hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHH
Confidence            2222  11111 112334   678887763  367889999999999998863  2449999999999999999999999


Q ss_pred             HHHHH
Q psy6547         256 NTINT  260 (266)
Q Consensus       256 ~~~~~  260 (266)
                      ++.++
T Consensus       359 ~f~~~  363 (365)
T PLN02452        359 DFQAK  363 (365)
T ss_pred             HHHHh
Confidence            88765

>KOG0053|consensus

Probab=99.22  E-value=2.1e-10  Score=97.97  Aligned_cols=127  Identities=17%  Similarity=0.161  Sum_probs=88.9

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      ++..+.+++-.+++.++..+  .+++++|++|++.||...+.    ++++|+++|+++|+++|+|++..+.      ..+
T Consensus       140 ~gie~~~vd~~~~~~~~~~i--~~~t~~V~~ESPsNPll~v~----DI~~l~~la~~~g~~vvVDnTf~~p------~~~  207 (409)
T KOG0053|consen  140 FGGEGDFVDVDDLKKILKAI--KENTKAVFLESPSNPLLKVP----DIEKLARLAHKYGFLVVVDNTFGSP------YNQ  207 (409)
T ss_pred             hCceeeeechhhHHHHHHhh--ccCceEEEEECCCCCccccc----cHHHHHHHHhhCCCEEEEeCCcCcc------ccc
Confidence            45556666666777788777  44799999999999998887    9999999999999999999999533      223


Q ss_pred             ccCCCCcCeee--ecccccCCc-hhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        96 ~~~~~~~d~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +.+.+..|+++  .+|.|+|.- .-.|.++.+ +++.+.+.......-+..+|..+......+
T Consensus       208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rgl  270 (409)
T KOG0053|consen  208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGL  270 (409)
T ss_pred             ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence            33444566666  889999541 223556664 677776665444445556666655554443

>PLN02271 serine hydroxymethyltransferase

Probab=99.21  E-value=2.4e-09  Score=95.47  Aligned_cols=213  Identities=14%  Similarity=0.100  Sum_probs=137.6

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.++|++.+. ..++++|++....++  ...    ++++++++|+++|+++++|.+| .|+-..|.. .....  ..|++
T Consensus       286 Dyd~lek~a~-~~rPKLII~g~Sayp--r~~----D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~sP~~--~aDvv  355 (586)
T PLN02271        286 DYDKLEEKAL-DFRPKILICGGSSYP--REW----DYARFRQIADKCGAVLMCDMAHISGLVAAKEC-VNPFD--YCDIV  355 (586)
T ss_pred             CHHHHHHHhh-hcCCeEEEECchhcc--CcC----CHHHHHHHHHHcCCEEEEECcccccccccCcC-CCCCc--CCcEE
Confidence            7899998653 347899999765443  222    8999999999999999999999 444222211 11111  35666


Q ss_pred             e--ecccccCCchhhhhheecHH--------------------hhhccCCCCCCCCCCC--cHHHHHHHHHHHHHHhh--
Q psy6547         106 I--LGKALSGGLYPISAVLADDE--------------------VMGTLVPGTHGSTYGG--NPLACKLAMTALDVILE--  159 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~--  159 (266)
                      +  ..|+|.|.  +.|.++.+++                    +.+.+...-.- .+.+  ..-..++...+++....  
T Consensus       356 t~TTHKtLrGP--rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~e  432 (586)
T PLN02271        356 TSTTHKSLRGP--RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPE  432 (586)
T ss_pred             EeCCcccCCCC--CceEEEecccccccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChH
Confidence            6  66999875  4577776653                    22222211011 1111  11235555566665544  


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C-----
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I-----  229 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----  229 (266)
                       .++.+++.++.+.|.+.|.+ .+...+     ..|.++.++++++... +.+.....+.|.+.||.+..    +     
T Consensus       433 fk~Ya~QVv~NAkaLA~~L~~-~G~~vv-----~ggTdnHlvLvDl~~~-g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~  505 (586)
T PLN02271        433 YKAYMQQVKKNAQALASALLR-RKCRLV-----TGGTDNHLLLWDLTTL-GLTGKNYEKVCEMCHITLNKTAIFGDNGTI  505 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCeEe-----eCCCCcceeeecCccc-CCCHHHHHHHHHHcCeEeccccCCCCCCCC
Confidence             35888888999999998887 443322     3455666888888552 44677777888888998852    2     


Q ss_pred             CCCEEEEecc----CCCCHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPA----LNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 ~~~~iR~~~~----~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .++.||+..+    ..+.++|++++.+.|.++++
T Consensus       506 ~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        506 SPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            3467999865    46678899998888888876

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.20  E-value=2.5e-10  Score=100.98  Aligned_cols=90  Identities=18%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             CCCCCCceeec-CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          14 GPHMPGYNIIP-YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~-~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ..++.++++++ ..|++++++.+  .+++++|+++...|+.|.+.    ++++|+++|+++|+++|+|.+++.    |..
T Consensus       130 ~~~Gi~v~~vd~~~d~e~l~~~l--~~~tk~V~~e~~~Np~~~v~----di~~I~~la~~~gi~livD~t~a~----g~~  199 (437)
T PRK05613        130 NRLGIEVTFVENPDDPESWQAAV--QPNTKAFFGETFANPQADVL----DIPAVAEVAHRNQVPLIVDNTIAT----AAL  199 (437)
T ss_pred             HhcCeEEEEECCCCCHHHHHHhC--CccCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCeEEEECCCcc----ccc
Confidence            44577888886 45899999999  45688999988888878777    999999999999999999999842    111


Q ss_pred             cccccCCCCcCeeeecccccC
Q psy6547          93 LAIHYEDVRPDIVILGKALSG  113 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~  113 (266)
                      .....+|.+.-+.++.|.++|
T Consensus       200 ~~p~~~GaDivv~S~~K~l~G  220 (437)
T PRK05613        200 VRPLELGADVVVASLTKFYTG  220 (437)
T ss_pred             cChHHhCCCEEEeeccceecC
Confidence            111134554444557799985

>PLN03032 serine decarboxylase; Provisional

Probab=99.20  E-value=1.4e-09  Score=94.24  Aligned_cols=204  Identities=15%  Similarity=0.056  Sum_probs=133.6

Q ss_pred             CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC-----CEEEEeccccCc-CCc---Ccccccc
Q psy6547          27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-----VLFIADEVQTGL-GRT---GKLLAIH   96 (266)
Q Consensus        27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g-----~~li~De~~~~~-~~~---g~~~~~~   96 (266)
                      |+++|+++++++. ++.+++++..++.+|.+-    ++++|+++|+++|     +++.+|.++.++ ...   ...+.+.
T Consensus       147 d~~~L~~~i~~~~~~~~lvv~tagtt~tG~id----pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~  222 (374)
T PLN03032        147 DYDDLERALAKNRDKPAILNVNIGTTVKGAVD----DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR  222 (374)
T ss_pred             cHHHHHHHHHHcCCCCEEEEEEecCcCCccCC----CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC
Confidence            7999999996532 467777887888888885    9999999999997     489999999653 110   0111211


Q ss_pred             cCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcH--HHHHHHHHHHHHHhhcc---HHH
Q psy6547          97 YEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNP--LACKLAMTALDVILEEN---MIE  164 (266)
Q Consensus        97 ~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~a~~~~l~~~~~~~---~~~  164 (266)
                         ..+|.++  ..|.++.+ .+.|.++.+++..+.+...     ....+..++.  ...+....+|+.+..++   ..+
T Consensus       223 ---~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~  298 (374)
T PLN03032        223 ---KPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQ  298 (374)
T ss_pred             ---cCCcEEEECcccccCCC-cCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHH
Confidence               2356566  55888756 7788888887766544321     1112344444  34566777787777655   566


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCH
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  244 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~  244 (266)
                      +..++++++.++|++ .+...+..   ...+   .+.|..+.     .+.     ..+|..+.+. .+.+|++++..+++
T Consensus       299 ~~~~~a~~l~~~l~~-~~~~~~~~---p~~~---~V~f~~~~-----~~~-----~~~~w~l~~~-~~~~hi~vm~~~~~  360 (374)
T PLN03032        299 HCMRNAHYLKDRLTE-AGLTCRLN---ELSS---TVVFERPM-----DEA-----FIKKWQLACE-GDIAHVVVMPNVTV  360 (374)
T ss_pred             HHHHHHHHHHHHHHh-CCCcEEEC---CCce---EEEEcCCC-----cHh-----Hhheeeeccc-CCEEEEEECCCCCH
Confidence            677888899999887 43322111   1122   44444332     111     2256666654 46899999988999


Q ss_pred             HHHHHHHHHHHH
Q psy6547         245 QELREGLDIIIN  256 (266)
Q Consensus       245 ~~i~~~~~~l~~  256 (266)
                      +.+|++++.|++
T Consensus       361 ~~id~fi~dl~~  372 (374)
T PLN03032        361 EKLDEFVEELVE  372 (374)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998875

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.17  E-value=8e-09  Score=87.20  Aligned_cols=215  Identities=19%  Similarity=0.216  Sum_probs=144.9

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.|+++++.++. ++++|++-...-      .-.-++++++++|++-|.+|++|-+| .|+--.|.+ .... . ..|++
T Consensus       154 DyD~~~k~a~e~-kPK~ii~G~SaY------~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p~P~-~-~AdvV  223 (413)
T COG0112         154 DYDEVEKLAKEV-KPKLIIAGGSAY------SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH-PNPL-P-HADVV  223 (413)
T ss_pred             CHHHHHHHHHHh-CCCEEEECcccc------ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC-CCCC-C-ccceE
Confidence            789999998665 578888764321      22339999999999999999999999 555323332 1111 1 25666


Q ss_pred             e--ecccccCCchhhhhheecH-HhhhccCCCCCCCCCCCcHHH-HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhh
Q psy6547         106 I--LGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLA-CKLAMTALDVILE---ENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~  178 (266)
                      +  -.|+|.|+  |.|.++++. ++.++++..-.-...++.-+. .++-..++....+   +++.+++.++++.+.+.|.
T Consensus       224 TtTTHKTlrGP--rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~  301 (413)
T COG0112         224 TTTTHKTLRGP--RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALK  301 (413)
T ss_pred             eCCcccCCCCC--CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence            6  66999874  788888875 787877753233333222222 3332333333323   3588889999999999998


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----c------CCCCEEEEecc----CCCCH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----P------ISNNIIRLSPA----LNITE  244 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~------~~~~~iR~~~~----~~~t~  244 (266)
                      + .+...+     +.|.++.++.+++.+. +.+.++....|.+.||.+.    |      ...+.||+..+    ..+.+
T Consensus       302 ~-~G~~vv-----sGgTdnHl~lVDl~~~-~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e  374 (413)
T COG0112         302 E-RGFKVV-----SGGTDNHLVLVDLRSK-GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGE  374 (413)
T ss_pred             H-cCCeEe-----cCCccceEEEEEcccC-CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCH
Confidence            8 554333     3466667888888842 5567777788888899875    2      23577999765    46678


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINT  260 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~  260 (266)
                      +++++..+.|.+++..
T Consensus       375 ~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         375 AEMEEIADLIADVLDG  390 (413)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8899988888888765

>PLN02590 probable tyrosine decarboxylase

Probab=99.16  E-value=5e-09  Score=94.59  Aligned_cols=225  Identities=12%  Similarity=0.086  Sum_probs=135.9

Q ss_pred             CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-C
Q psy6547          27 DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-R  101 (266)
Q Consensus        27 d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~  101 (266)
                      |+++|++.|+++.    .+.+|+.+-...++|.+    +++++|.++|++||+++.||.+|.|+......+.....|+ .
T Consensus       270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai----Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~  345 (539)
T PLN02590        270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAV----DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIEN  345 (539)
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc----CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCcc
Confidence            7999999996531    34455555555556666    5999999999999999999999987532222111111233 2


Q ss_pred             cCeee--ecccccCCchhhhhheecHH--hhhccCC---C--------------CCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547         102 PDIVI--LGKALSGGLYPISAVLADDE--VMGTLVP---G--------------THGSTYGGNPLACKLAMTALDVILEE  160 (266)
Q Consensus       102 ~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~---~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~  160 (266)
                      .|-++  ..|++..+ +..|.++.+.+  +.+.+..   +              ...+.-.+-++.......+|+.+..+
T Consensus       346 ADSit~D~HK~l~~p-~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~  424 (539)
T PLN02590        346 ADSFNMNAHKWLFAN-QTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE  424 (539)
T ss_pred             CCEEEECchhhcCcC-cCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHH
Confidence            34333  77999877 77777776542  2222210   0              00011112334555666777777776


Q ss_pred             cH---HHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--c----chHHHHHHHHHHCCceec-c-
Q psy6547         161 NM---IENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA--I----LEVYDVCIKMKDAGLVTK-P-  228 (266)
Q Consensus       161 ~~---~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~gi~~~-~-  228 (266)
                      ++   .++..++++++.+.+++ .+. ..+..  +..    +++-|.+....  .    .-..++.++|.+.|.... + 
T Consensus       425 G~~~~i~~~~~lA~~~~~~l~~-~~~fel~~~--~~l----~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t  497 (539)
T PLN02590        425 NLRNFIRDHVNLAKHFEDYVAQ-DPSFEVVTT--RYF----SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHT  497 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC--Cce----EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence            54   45556788888888877 332 11111  111    24555554310  1    113567777777766543 3 


Q ss_pred             --CCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         229 --ISNNIIRLSP-ALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       229 --~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                        .+..++|++. +...++++++.+++.|.+...++..
T Consensus       498 ~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        498 ALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence              2457899986 4567899999999999998777543

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.14  E-value=5.4e-10  Score=97.09  Aligned_cols=211  Identities=15%  Similarity=0.140  Sum_probs=121.9

Q ss_pred             CHHHHHHHHhcCCCEEE----EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCc
Q psy6547          27 DVDALEAKLKSNPNICA----FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP  102 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~----i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~  102 (266)
                      +.+.+++.|++++..++    ++++|.+  .|.+.    ++++|.++|+++|++|+|||+|.+..... .+.........
T Consensus       152 ~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~----di~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~ga  224 (417)
T PF01276_consen  152 NEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCY----DIKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGA  224 (417)
T ss_dssp             SHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTS
T ss_pred             hHHHHHHHHHhCccccCceEEEEeCCCC--CeEEE----CHHHHHHHhcccCCEEEEEccccccccCC-CCccchhhccC
Confidence            34999999998876554    4455555  67887    99999999999999999999996532333 33444455566


Q ss_pred             C-------eee--ecccccCCchhhhhheecHHh-h--hccCC-CCCCCCCCCcHHHHHHHHHHHHHH-hh--ccHHHHH
Q psy6547         103 D-------IVI--LGKALSGGLYPISAVLADDEV-M--GTLVP-GTHGSTYGGNPLACKLAMTALDVI-LE--ENMIENA  166 (266)
Q Consensus       103 d-------~~~--~sK~~~~g~~~~g~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~-~~--~~~~~~~  166 (266)
                      |       +++  ..|.+++= -..+++..+... +  +.++. ....+|.++|.+.++....+.+.+ ..  +.++++.
T Consensus       225 d~~~~~~~~vvqS~HKtL~al-tQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~  303 (417)
T PF01276_consen  225 DRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEA  303 (417)
T ss_dssp             S-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             ccccccceeeeechhhccccc-ccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            6       665  66988753 334455544332 1  22221 234566678888888888888887 33  3588888


Q ss_pred             HHHHHHHHHHhhcc--ccc-CCC-cccEEecC-------------------c---cceeeEEEEe--------eCccchH
Q psy6547         167 YKMGEIFRSELSSP--ANK-SKA-SFKLSSGG-------------------L---KKSINTLILS--------VSAILEV  212 (266)
Q Consensus       167 ~~~~~~l~~~l~~~--~~~-~~~-~~~~~~~g-------------------~---~~~~~~~~~~--------~~~~~~~  212 (266)
                      .++...+|+++++.  +.. ..+ +..+.+.+                   .   +--=+.+.++        ...+..+
T Consensus       304 i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g  383 (417)
T PF01276_consen  304 IELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPG  383 (417)
T ss_dssp             HHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---H
T ss_pred             HHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCH
Confidence            88999999998420  211 001 11011100                   0   0002334432        1125678


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHH
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  245 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~  245 (266)
                      ..+.+.|.++||.+.-.+...+-+-.+...|++
T Consensus       384 ~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~  416 (417)
T PF01276_consen  384 YIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE  416 (417)
T ss_dssp             HHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred             HHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence            889999999999999877777777766666654

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.13  E-value=1.6e-08  Score=86.30  Aligned_cols=239  Identities=17%  Similarity=0.164  Sum_probs=152.4

Q ss_pred             cCcccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      .|+..+.+..+-+||.|+.+     |+++|++.+.  +++++++++.++. -|..   .+.+.+|+++.|++|..|..|.
T Consensus       168 GTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~--~~~AalMiTnPsT-~GvF---E~~I~ei~~ivH~~Gg~vY~DG  241 (496)
T COG1003         168 GTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE--DNLAALMITNPST-LGVF---EEDIREICEIVHEAGGQVYYDG  241 (496)
T ss_pred             CCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc--cceeEEEeccCcc-cccc---hhhHHHHHHHHHHcCCEEEecC
Confidence            33344777788999999976     7999999994  5788888775443 3433   6789999999999999999997


Q ss_pred             ccc----CcCCcCcccccccCCCCcCeee--eccccc----CCchhhhhheecHHhhhccCC----C-------------
Q psy6547          82 VQT----GLGRTGKLLAIHYEDVRPDIVI--LGKALS----GGLYPISAVLADDEVMGTLVP----G-------------  134 (266)
Q Consensus        82 ~~~----~~~~~g~~~~~~~~~~~~d~~~--~sK~~~----~g~~~~g~~~~~~~~~~~~~~----~-------------  134 (266)
                      +-.    |..+.|        .+..|++-  +.|+|+    ||--..|-+...+.+...+..    .             
T Consensus       242 ANlNA~vG~~rPG--------d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~  313 (496)
T COG1003         242 ANLNAIVGLARPG--------DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKK  313 (496)
T ss_pred             cchhhhhcccccc--------ccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCc
Confidence            772    111222        13455544  778887    331445666666666554432    0             


Q ss_pred             --CCCCCCCCcHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE-EeeCc
Q psy6547         135 --THGSTYGGNPLACKLAMTALDVILEENMIE---NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI-LSVSA  208 (266)
Q Consensus       135 --~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~  208 (266)
                        .....+.+|......+++-+..+..+++.+   ...-++.|+..+|+....-...+.....+-+   ++... +....
T Consensus       314 s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~---ild~r~l~~~~  390 (496)
T COG1003         314 SIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHEC---ILDARPLKKET  390 (496)
T ss_pred             cceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEE---EeechHhHhhc
Confidence              011222345555555666666666655433   2334678888888862221111110011122   22222 11222


Q ss_pred             cchHHHHHHHHHHCCceec----c-CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         209 ILEVYDVCIKMKDAGLVTK----P-ISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~----~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +....+++++|++.|+..-    | .-.+.+++=|.-.-+.+++|++++++.++.++..
T Consensus       391 Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~  449 (496)
T COG1003         391 GVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD  449 (496)
T ss_pred             CCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999753    2 1468899999889999999999999998877653

>KOG1549|consensus

Probab=99.13  E-value=2.9e-09  Score=91.28  Aligned_cols=224  Identities=15%  Similarity=0.152  Sum_probs=133.9

Q ss_pred             CCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          18 PGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        18 ~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ..|+.+|.+     |++.+++.|  .++++++.+..++|..|.+.    ++++|.++|+++|+.+++|.+|. .   |..
T Consensus       156 ~~Vt~lpv~~~~~~d~~~~~~~i--~~~T~lv~I~~Vnn~~gv~~----Pv~EI~~icr~~~v~v~~DaAQa-v---G~i  225 (428)
T KOG1549|consen  156 LEVTYLPVEDSGLVDISKLREAI--RSKTRLVSIMHVNNEIGVLQ----PVKEIVKICREEGVQVHVDAAQA-V---GKI  225 (428)
T ss_pred             eEEEEeccCccccccHHHHHHhc--CCCceEEEEEecccCccccc----cHHHHHHHhCcCCcEEEeehhhh-c---CCc
Confidence            567777755     689999999  66899999999999999998    99999999999999999999993 3   331


Q ss_pred             cccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccC------CCC---CCCCCCCcHHHHHHHHHHHHHHhhc-
Q psy6547          93 LAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLV------PGT---HGSTYGGNPLACKLAMTALDVILEE-  160 (266)
Q Consensus        93 ~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~a~~~~l~~~~~~-  160 (266)
                       ..+...+.+|+.+  ..|++++.  ++|++.+++. ...+.      ...   -...-+.....+...-++.+....+ 
T Consensus       226 -~vDV~eln~D~~s~s~HK~ygp~--~iGaLYvr~~-~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~  301 (428)
T KOG1549|consen  226 -PVDVQELNADFLSISAHKIYGPP--GIGALYVRRK-RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEM  301 (428)
T ss_pred             -cccHHHcCchheeeecccccCCC--cceEEEEccC-CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhc
Confidence             3344445566655  66999954  2888888751 11221      111   1111123444555555666665442 


Q ss_pred             -cHHHHHHHHHHHHHHHhhcccccC---CCcccEEecCccceeeEEEEeeCccc----hHHHHH---------------H
Q psy6547         161 -NMIENAYKMGEIFRSELSSPANKS---KASFKLSSGGLKKSINTLILSVSAIL----EVYDVC---------------I  217 (266)
Q Consensus       161 -~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~---------------~  217 (266)
                       ....+++++...+...+.+...+.   +.+.  .....   ...|.++...+.    +.+++.               -
T Consensus       302 ~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~--~~~~~---~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy  376 (428)
T KOG1549|consen  302 AYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGK--SRYPG---LVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSY  376 (428)
T ss_pred             chhHHHHHHHHHHHHHHHhhhCchhhccCCcc--ccccc---ceeeecccccCcchhhhhhhhhhcccchhhcCCCCcch
Confidence             244555555555555554322221   1111  11112   233333310011    111111               1


Q ss_pred             HHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         218 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       218 ~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .|+..|+-... ...++||+....++++|++++.+.+.+.+...
T Consensus       377 ~l~~~G~~~~~-~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~  419 (428)
T KOG1549|consen  377 VLRAIGVDEDL-AHSSIRISIGRYTTEEDIDYLVDAIKKLVSLL  419 (428)
T ss_pred             hhhhcCcchhh-hcceeEEeeeeeCcHHHHHHHHHHHHHHHHhc
Confidence            11122221111 24789999999999999999999999987664

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.13  E-value=2.1e-09  Score=93.10  Aligned_cols=208  Identities=17%  Similarity=0.199  Sum_probs=124.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.+++++++++. ++++|++-....      +-.-++++++++|++.|.+|++|-+| .|+--.|. +.. -+.. .|++
T Consensus       157 D~d~l~~~a~~~-kPklIi~G~S~y------~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~-~~~-P~~~-ADvv  226 (399)
T PF00464_consen  157 DYDELEKLAKEH-KPKLIICGASSY------PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGL-FPN-PFPY-ADVV  226 (399)
T ss_dssp             -HHHHHHHHHHH---SEEEEE-SST------SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS-S---GCCT-SSEE
T ss_pred             CHHHHHHHHhhc-CCCEEEECchhc------cCccCHHHHHHHHHhcCcEEEecccccccceehhe-ecC-cccc-ceEE
Confidence            799999999765 678999876543      22238899999999999999999999 44422222 111 1122 5777


Q ss_pred             e--ecccccCCchhhhhheec--------------HHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhh---ccHHHH
Q psy6547         106 I--LGKALSGGLYPISAVLAD--------------DEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE---ENMIEN  165 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~  165 (266)
                      +  ..|+|.|+  +.|.++++              +++.+.++..-.-... +...-..++...++....+   .++.++
T Consensus       227 t~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~q  304 (399)
T PF00464_consen  227 TGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQ  304 (399)
T ss_dssp             EEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             Eeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHH
Confidence            7  55999874  78888888              6666666532111111 1122233344444554433   368888


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC-----CCCEEEE
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI-----SNNIIRL  236 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~iR~  236 (266)
                      +.++++.|.+.|.+ .+...+     ..|.++.++++++... +.+..+..+.|.+.||.+.    |.     ....+|+
T Consensus       305 Vv~NAk~La~~L~~-~G~~v~-----~ggTd~H~vlvd~~~~-~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRl  377 (399)
T PF00464_consen  305 VVKNAKALAEALQE-RGFKVV-----TGGTDNHQVLVDLRSF-GIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRL  377 (399)
T ss_dssp             HHHHHHHHHHHHHH-TT-EEG-----GGS-SSSEEEEEGGGG-TS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEE
T ss_pred             HHHHHHHHHHHHhh-CCcEEE-----ECCCCCCeEEEEeccc-ccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEE
Confidence            99999999999988 554333     2355666899998652 4577888899999999985    22     2468999


Q ss_pred             ecc----CCCCHHHHHHHHHH
Q psy6547         237 SPA----LNITEQELREGLDI  253 (266)
Q Consensus       237 ~~~----~~~t~~~i~~~~~~  253 (266)
                      ..+    ....++|++++.+.
T Consensus       378 GT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  378 GTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             ESHHHHHTT--HHHHHHHHHH
T ss_pred             CCHHHHhCCCCHHHHHHHHhh
Confidence            875    45677777766554

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.09  E-value=4.1e-09  Score=91.28  Aligned_cols=199  Identities=11%  Similarity=-0.016  Sum_probs=130.1

Q ss_pred             EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhhee
Q psy6547          44 FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA  123 (266)
Q Consensus        44 i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~  123 (266)
                      +++.++.+.+|...    +++++...+  +++++|+|-+-+ ++  +..+.++  +++.-+.+..|+|++. -.+++++.
T Consensus       131 v~~vhnETSTGv~n----pv~~i~~~~--~~~lliVDavSs-~g--~~~l~~d--~iDv~~tgsQK~L~~p-pGls~v~v  198 (374)
T TIGR01365       131 VVFTWNGTTSGVRV----PNGDFIPAD--REGLTICDATSA-AF--AQDLDYH--KLDVVTFSWQKVLGGE-GAHGMLIL  198 (374)
T ss_pred             EEEecCCCchheec----ccccccccc--CCCcEEEEccch-hc--CCCCChh--HCcEEEEechhccCCC-CceEEEEE
Confidence            55777777788875    555544322  589999997774 32  3444444  3444444477999943 33788888


Q ss_pred             cHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHH
Q psy6547         124 DDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSE  176 (266)
Q Consensus       124 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~  176 (266)
                      +++.++..+..                       .....++++.....++..+|+++.++    +..++.+++.+.+++.
T Consensus       199 s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~  278 (374)
T TIGR01365       199 SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAF  278 (374)
T ss_pred             CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            88877554310                       01223344444555666667666553    4777888899999999


Q ss_pred             hhcccc-cCCCcc-cEEecCccceeeEEEEeeCccc-----h-----HHHHHHHHHHCCceeccC----CCCEEEEeccC
Q psy6547         177 LSSPAN-KSKASF-KLSSGGLKKSINTLILSVSAIL-----E-----VYDVCIKMKDAGLVTKPI----SNNIIRLSPAL  240 (266)
Q Consensus       177 l~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~  240 (266)
                      +++ ++ ...+.. ....+..   ++.+.++.. +.     +     ..+|.+.|+++||.+.++    .+..+|+....
T Consensus       279 l~~-lg~l~~~~~~~~~rS~t---vt~v~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G  353 (374)
T TIGR01365       279 VAK-NNWIHFLAETPEIRSNT---SVCLKVVDP-AIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGA  353 (374)
T ss_pred             HHH-CCCcccCCCChhhcCCC---eEEEEeCCc-cccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCC
Confidence            998 77 333332 1112333   455555431 11     2     688999999999998865    24789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTIN  259 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~  259 (266)
                      ..+.+|++++++.|+-+..
T Consensus       354 ~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       354 TVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             cCCHHHHHHHHHHHHHHHh
Confidence            9999999999999986543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.08  E-value=2.4e-08  Score=90.23  Aligned_cols=223  Identities=17%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             CceeecCC-----CHHHHHHHHhcC--CC--EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSN--PN--ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~--~~--~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.+|-+     |+++|++.|++.  .+  +.+|+.+...+.+|.+-    ++++|+++|+++|+++++|.+|++....
T Consensus       235 ~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiD----pl~eIa~i~~~~g~~lHVDaA~gg~~~~  310 (522)
T TIGR03799       235 NLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNID----PLDEMADIAQELGCHFHVDAAWGGATLL  310 (522)
T ss_pred             cEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcC----CHHHHHHHHHHcCCeEEEEchhhhHHHh
Confidence            56666643     799999998631  23  33344444455677775    9999999999999999999999653111


Q ss_pred             CcccccccCCC-CcCeee--ecccccCCchhhhhheec-HHhhhccCC---CC-C--C-----CCCCCcHHH-HHHHHHH
Q psy6547          90 GKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLAD-DEVMGTLVP---GT-H--G-----STYGGNPLA-CKLAMTA  153 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~-~~~~~~~~~---~~-~--~-----~~~~~~~~~-~~a~~~~  153 (266)
                      ...+.....++ ..|.++  ..|++.+. +..|+++.+ +...+.+..   +. .  .     .++.+++.. ......+
T Consensus       311 ~~~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~a  389 (522)
T TIGR03799       311 SNTYRHLLKGIERADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAG  389 (522)
T ss_pred             CHHHHHHhcCchhCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHH
Confidence            11111112343 567666  55988877 778888775 344444432   10 0  0     112222222 2246677


Q ss_pred             HHHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc--------------------
Q psy6547         154 LDVILEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI--------------------  209 (266)
Q Consensus       154 l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~--------------------  209 (266)
                      ++.++.+   .+.++..++++++.+.|++ ... ..+..   ..-.   ++.|.+.....                    
T Consensus       390 L~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~---p~l~---iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~  462 (522)
T TIGR03799       390 LHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTE---PELC---LLTYRYVPEEVQQALAKADEEQREKINELLD  462 (522)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecC---CCcc---EEEEEEeChhhcccccccchhhhhhHHHHHH
Confidence            7777664   4677778889999999887 432 11111   1112   56666432110                    


Q ss_pred             chHHHHHHHHHHCCceeccC-----------CCCEEEEec-cCCCCHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKPI-----------SNNIIRLSP-ALNITEQELREGLDI  253 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~-----------~~~~iR~~~-~~~~t~~~i~~~~~~  253 (266)
                      .-...+.+++.+.|......           +..++|+++ +...|+++++.+++.
T Consensus       463 ~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       463 RLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence            01245666777777654321           124699976 456678888876653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.07  E-value=1.5e-09  Score=94.46  Aligned_cols=220  Identities=19%  Similarity=0.241  Sum_probs=127.3

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ...++.++++++.++.+.++  ++ .+++++|+++.+.|+++.+.    ++++|.++|+++|  +++|.++..- ..+. 
T Consensus       124 ~~~~Gi~v~fvd~~~~~~~~--l~-~~~tklv~~e~~snpt~~v~----Di~~I~~la~~~~--lvVD~t~~s~-~~~~-  192 (384)
T PRK06434        124 LKTLGIHVDYIDTDRLNSLD--FD-PSNYDLIYAESITNPTLKVP----DIKNVSSFCHEND--VIVDATFASP-YNQN-  192 (384)
T ss_pred             HHhcCcEEEEECCCChhhee--ec-CCCeeEEEEEcCCCCCceee----cHHHHHHHHHHcC--eEEECCCCCc-ccCC-
Confidence            34456778888776655555  42 22689999999988887776    9999999999998  4679998311 1122 


Q ss_pred             cccccCCCCcCeee--ecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        93 ~~~~~~~~~~d~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                          ..+...|+++  .+|.++|.. .-.|.++. ++++.+.+...........+++.++.+...|+-+  +...++..+
T Consensus       193 ----pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~  266 (384)
T PRK06434        193 ----PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNK  266 (384)
T ss_pred             ----chhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHH
Confidence                2234456655  559998520 11455545 4455454442211222334565555554444332  334566666


Q ss_pred             HHHHHHHHhhccccc------CCCc---ccEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------eeccC
Q psy6547         169 MGEIFRSELSSPANK------SKAS---FKLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VTKPI  229 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~------~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~~~~  229 (266)
                      ++..+.+.|+. .+.      +.+.   ....+.|.   ++.|++..  ...+.+|.+.|.  ..+.        +..|.
T Consensus       267 ~a~~~a~~L~~-~p~v~~V~yPgl~~~~~~~~g~g~---~~sf~l~~--~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~  340 (384)
T PRK06434        267 NGMELARFLRD-SKKISNVYYPDTEIGKKVLRGFGG---MLSFELRS--MEDVHKFIRNLEIPMVAASLGGVESLITLPV  340 (384)
T ss_pred             HHHHHHHHHHc-CCCccEEECCChHHHHHhcCCCCc---eEEEEECC--HHHHHHHHHhCCcceEccCCCCCCeeeECCC
Confidence            77777777775 321      1111   00235577   99999964  344566666664  1111        11110


Q ss_pred             -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                       ..+.||+|+.+.    +.+.+++.|+++++
T Consensus       341 ~~~h~~~~~e~~~~~gi~~~liRlsvGlE----d~~dLi~dl~~Al~  383 (384)
T PRK06434        341 ETSHSSLSPEERERLGISDNLVRFSIGIE----DIDDLIKDIENALS  383 (384)
T ss_pred             ccccccCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHhc
Confidence                             246899996554    45666777777664

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.03  E-value=2.8e-08  Score=79.88  Aligned_cols=226  Identities=15%  Similarity=0.237  Sum_probs=144.5

Q ss_pred             CCCceeecCC-------CHHH----HHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          17 MPGYNIIPYN-------DVDA----LEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        17 ~~~v~~~~~~-------d~~~----l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +-+|..||+.       +++.    +++..++. ..+++.+++.+.++.|.+.    +-+.++++|+++|++++..-+|+
T Consensus       121 gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~----Dakkva~ic~e~gvPlllN~AYt  196 (382)
T COG1103         121 GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA----DAKKVAKICREYGVPLLLNCAYT  196 (382)
T ss_pred             CCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch----hhHHHHHHHHHcCCceEeeccee
Confidence            4566677643       3444    44444443 3589999999999999887    99999999999999999999995


Q ss_pred             CcCCcCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCC-----------CCCCCCCCcHH-HHHHH
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG-----------THGSTYGGNPL-ACKLA  150 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~a~  150 (266)
                          .|.. ......+.+|+++-|  |.+++. -|+|.+..+++..+.....           ..+.|..+.|+ .+.|.
T Consensus       197 ----~Grm-pvs~ke~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmAS  270 (382)
T COG1103         197 ----VGRM-PVSGKEIGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMAS  270 (382)
T ss_pred             ----eccc-cccccccCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhc
Confidence                2331 233445677877744  888855 5899998888876543221           12223333333 22222


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCC
Q psy6547         151 MTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAG  223 (266)
Q Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g  223 (266)
                      .--  ..+.-..|..-.+.++++.+.|++ ++. ..+...+..+-    ...|..+.-.      .....-+.++|+++|
T Consensus       271 fP~--V~eRVkrWdeEv~kaR~fv~elEk-igg~~qlG~rPk~Hd----Lm~Fetp~f~eIakk~~r~gyFlY~ELK~Rg  343 (382)
T COG1103         271 FPH--VVERVKRWDEEVEKARWFVAELEK-IGGVKQLGERPKNHD----LMKFETPVFHEIAKKHKRKGYFLYEELKKRG  343 (382)
T ss_pred             CHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhCCCCcccc----eeeecCchHHHHHHhCcCCceeeHHHHHhcC
Confidence            211  111222344444567888888888 663 44544333333    3555555311      111234678899999


Q ss_pred             cee-ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         224 LVT-KPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       224 i~~-~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      |.. .|+-..++.+|. +..+.|+++..++.+++++++
T Consensus       344 I~GI~~G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         344 IHGIQPGQTKYFKLSV-YGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             ccccccCceeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            875 466667888885 467999999999999998875

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.02  E-value=3.5e-08  Score=94.61  Aligned_cols=213  Identities=13%  Similarity=0.055  Sum_probs=132.2

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      .+.+-+|+.++.++  +    ++ ++++.++ +..+.+..|.+.    ++++|.++||++|+++++|-.+...+. ..  
T Consensus       187 ~~~G~ev~~~~~~~--d----~~-~~~~~~v-lvq~p~~~G~i~----d~~~i~~~ah~~Gal~~vda~~~Al~~-l~--  251 (954)
T PRK05367        187 EPLGIEVVVGDAAK--A----LD-HDDVFGV-LLQYPGTSGEVR----DYTALIAAAHARGALVAVAADLLALTL-LT--  251 (954)
T ss_pred             HhCCCEEEEecCcc--C----CC-cccEEEE-EEecCCCCeeec----cHHHHHHHHHHcCCEEEEEehhhhccC-CC--
Confidence            45666777777643  1    11 2345554 444566788876    899999999999999999976633211 11  


Q ss_pred             ccccCCCCcCeee--eccc---cc-CCchhhhhheecHHhhhccCCCCCC-------C--------------CC---CCc
Q psy6547          94 AIHYEDVRPDIVI--LGKA---LS-GGLYPISAVLADDEVMGTLVPGTHG-------S--------------TY---GGN  143 (266)
Q Consensus        94 ~~~~~~~~~d~~~--~sK~---~~-~g~~~~g~~~~~~~~~~~~~~~~~~-------~--------------~~---~~~  143 (266)
                      ....  ...|+++  .-|+   ++ || -..|++.+++++.+.+.+...+       .              -+   +.|
T Consensus       252 ~pge--~GaDi~vgs~qkfg~P~g~GG-P~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsN  328 (954)
T PRK05367        252 PPGE--MGADIAVGSAQRFGVPMGFGG-PHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSN  328 (954)
T ss_pred             Chhh--cCCCEEEeeCcccCCCCCCCC-CCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccc
Confidence            1223  3456655  4465   22 34 3488888888877776532110       0              00   111


Q ss_pred             HHH---HHHHHHH--HHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         144 PLA---CKLAMTA--LDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       144 ~~~---~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      .-+   ..++.++  +..+..   +++.+++..++.+++++|+. .+......   ....   .+.+.++    .++.++
T Consensus       329 ict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~---~~f~---~~~~~~~----~~~~~i  397 (954)
T PRK05367        329 ICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHD---SFFD---TLTVEVG----GDAAAV  397 (954)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCC---CCCC---eEEEeCC----CCHHHH
Confidence            111   1112211  233344   34677888899999999876 44322111   0011   2334432    268899


Q ss_pred             HHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      .++|+++||.++....+.+|+|++..+|++||+++++.|.
T Consensus       398 ~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        398 LARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             HHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence            9999999999977667899999999999999999999997

>PLN02263 serine decarboxylase

Probab=99.01  E-value=4e-08  Score=86.81  Aligned_cols=219  Identities=15%  Similarity=0.035  Sum_probs=138.3

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC-----EEEEecccc
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-----LFIADEVQT   84 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~-----~li~De~~~   84 (266)
                      ++-+++.||-+     |+++|++.|+++. .+.+|+.+-...+.|.+    +++++|.++|+++|+     ++.+|.+|.
T Consensus       198 lgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi----Dpi~eIa~i~~~~g~~~~~iwlHVDAA~G  273 (470)
T PLN02263        198 YRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV----DDLDLVIKTLEECGFSQDRFYIHCDGALF  273 (470)
T ss_pred             cCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC----CCHHHHHHHHHHcCCccCCeeEEEeccch
Confidence            44566677643     7999999996653 34555555555556766    599999999999997     999999998


Q ss_pred             CcCC----cCcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHH--HHHHHH
Q psy6547          85 GLGR----TGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL--ACKLAM  151 (266)
Q Consensus        85 ~~~~----~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~a~~  151 (266)
                      |+..    ....+.+.   ...|-++  ..|+++.. ++.|.++.+.+..+.+...     ....+..++.-  ....+.
T Consensus       274 G~~lPf~~~~~~~df~---~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW  349 (470)
T PLN02263        274 GLMMPFVKRAPKVTFK---KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW  349 (470)
T ss_pred             hhHhhhcccccccCCC---cCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHH
Confidence            7521    11111111   1233333  66999987 8888888886654433211     01123333332  345667


Q ss_pred             HHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         152 TALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       152 ~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      .+|+.++.+++   .++..++++++.++|++ .+...+   .....+   .+.|..+.    + .     +..+|..+..
T Consensus       350 ~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~-~g~~~~---~~p~s~---~V~f~~p~----~-~-----~~~~gW~L~~  412 (470)
T PLN02263        350 YTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE-AGISAM---LNELSS---TVVFERPK----D-E-----EFVRRWQLAC  412 (470)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEE---eCCCce---EEEEecCc----h-H-----HhhcceEEcc
Confidence            77777776654   44555678888888887 432111   111222   45554332    1 1     1346777766


Q ss_pred             CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         229 ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       229 ~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      . ++.++++.+..++++.+|++++.|++....
T Consensus       413 ~-~~~~Hivvmphv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        413 Q-GNIAHVVVMPSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             C-CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence            4 467999988888999999999999987764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.01  E-value=3.2e-08  Score=94.64  Aligned_cols=213  Identities=11%  Similarity=0.063  Sum_probs=129.3

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      +.+.+|+.++.++.+    ..  .+.+.+++ ..+.+..|.+.    ++++|.++||++|+++++ .++. ++-.+- -.
T Consensus       215 ~~GieV~~v~~~~~~----~~--~~~v~~vl-vq~P~~~G~v~----dv~~I~~~ah~~GaL~iV-aad~-lal~~l-~~  280 (993)
T PLN02414        215 GLGLEVVVADEKDFD----YS--SGDVCGVL-VQYPATDGEVL----DYAEFVKNAHANGVKVVM-ATDL-LALTML-KP  280 (993)
T ss_pred             hcCCEEEEecchhhc----cc--cCceEEEE-EecCCCCeEEc----CHHHHHHHHHHcCCEEEE-EECH-HHhcCC-CC
Confidence            455666666653321    11  22344444 44556688886    899999999999999999 4441 111111 01


Q ss_pred             cccCCCCcCeee--ecccc---c-CCchhhhhheecHHhhhccCCCCCC------------------------CCCCCcH
Q psy6547          95 IHYEDVRPDIVI--LGKAL---S-GGLYPISAVLADDEVMGTLVPGTHG------------------------STYGGNP  144 (266)
Q Consensus        95 ~~~~~~~~d~~~--~sK~~---~-~g~~~~g~~~~~~~~~~~~~~~~~~------------------------~~~~~~~  144 (266)
                      ...  +..|+++  .-|+.   | || -..|++.+++++.+.+.....+                        ...+.|.
T Consensus       281 pge--~GADi~vgsgqKwg~P~G~GG-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNi  357 (993)
T PLN02414        281 PGE--WGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNI  357 (993)
T ss_pred             Hhh--ccCcEEEECCCccccCCCCCC-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccch
Confidence            222  3456655  34554   2 44 4488999988876654321000                        0113333


Q ss_pred             HHHHHHHHHHH-----HHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547         145 LACKLAMTALD-----VILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC  216 (266)
Q Consensus       145 ~~~~a~~~~l~-----~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  216 (266)
                      -+..+..+++.     .+..   +++.+++.++..+++++|+. .+......   ....   .+.|.++     ++.++.
T Consensus       358 ct~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G~~~~~~---~~f~---~vt~~~~-----~~~~v~  425 (993)
T PLN02414        358 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK-LGFQVQSL---PFFD---TVKVKCS-----DADAIA  425 (993)
T ss_pred             hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh-cCCccCCC---CCcC---eEEEecC-----CHHHHH
Confidence            22333333332     2222   34678888999999999987 55322111   1011   3444442     358899


Q ss_pred             HHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       217 ~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      ++|.++||.++....+.+|+|++..+|++||+++++.|..
T Consensus       426 ~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        426 DAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             HHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence            9999999999877678899999999999999999999963

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.99  E-value=6.6e-08  Score=89.38  Aligned_cols=224  Identities=10%  Similarity=0.024  Sum_probs=134.3

Q ss_pred             CHHHHHHHHhcC-CC-------EEEEE-EccccCCCCcccCChHHHHHHHHH-HHhcCCEEEEeccccCcCCcCcc---c
Q psy6547          27 DVDALEAKLKSN-PN-------ICAFM-VEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFIADEVQTGLGRTGKL---L   93 (266)
Q Consensus        27 d~~~l~~~l~~~-~~-------~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l-~~~~g~~li~De~~~~~~~~g~~---~   93 (266)
                      +.+.+++.|+++ ++       .++++ .+|.+  .|.+.    ++++|.++ ++.++ +|++||+|.++......   +
T Consensus       261 ~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~y----di~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~  333 (720)
T PRK13578        261 DEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIY----NARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADC  333 (720)
T ss_pred             cHHHHHHHHHhcCccccccccCceEEEEECCCC--cceee----cHHHHHHHhhccCC-cEEEeCcchhhhccCcccccC
Confidence            367799999776 23       45555 44444  67776    88999998 68888 99999999664333321   2


Q ss_pred             ccccCCCCcC----eee--ecccccCCchhhhhheecHHhhh---------ccCC-CCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          94 AIHYEDVRPD----IVI--LGKALSGGLYPISAVLADDEVMG---------TLVP-GTHGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        94 ~~~~~~~~~d----~~~--~sK~~~~g~~~~g~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      .-......+|    +++  ..|.+++= -..+++..+...++         .++. ....++.++|.+.+++...+-..+
T Consensus       334 p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m  412 (720)
T PRK13578        334 SPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMH  412 (720)
T ss_pred             ChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            2112234555    555  66888752 33445544332211         1111 134455567777777777666655


Q ss_pred             hh---ccHHHHHHHHHHHHHHHh-hccccc-CCC-cccE--------------------------EecCcc---------
Q psy6547         158 LE---ENMIENAYKMGEIFRSEL-SSPANK-SKA-SFKL--------------------------SSGGLK---------  196 (266)
Q Consensus       158 ~~---~~~~~~~~~~~~~l~~~l-~~~~~~-~~~-~~~~--------------------------~~~g~~---------  196 (266)
                      ..   +.+++...++...+|+.+ +. ... ..+ +..+                          .-.|.+         
T Consensus       413 ~~~~G~~l~~~~i~~a~~~R~~l~~~-~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~l  491 (720)
T PRK13578        413 EGESGRRLWMECVKLGIEARKLILAR-CKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFV  491 (720)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHh-CCCeeecccccccccccccCchhhhcccccccccccCcccccccccccccccc
Confidence            53   347777778888888777 32 221 101 0000                          000100         


Q ss_pred             ce-eeEEEEeeCc---------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         197 KS-INTLILSVSA---------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       197 ~~-~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      -| =+.+.++.-+         |..+..+.+.|.++||.+.-.+...+-+-++...|+++++++++.|.++-+
T Consensus       492 DP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~  564 (720)
T PRK13578        492 DPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK  564 (720)
T ss_pred             CCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            00 1222222100         122688999998889999988888888888899999999999999987744

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.97  E-value=7e-08  Score=89.11  Aligned_cols=223  Identities=12%  Similarity=0.033  Sum_probs=138.6

Q ss_pred             CHHHHHHHHhcCCCEE----EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc-ccc--CC
Q psy6547          27 DVDALEAKLKSNPNIC----AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED   99 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~----~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~-~~~--~~   99 (266)
                      +.+.+++.++++++.+    +++.+|.+  .|.+.    .++.|.++|+.++  |++||+|.++......+. ...  .+
T Consensus       281 ~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~y----d~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~g  352 (714)
T PRK15400        281 QHATIAKRVKETPNATWPVHAVITNSTY--DGLLY----NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGG  352 (714)
T ss_pred             CHHHHHHHHHhCccccCccEEEEECCCC--ccEec----CHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcC
Confidence            4899999998876444    66666655  67776    8889999998887  689999976533333221 111  12


Q ss_pred             CC-cC--eee--ecccccCCchhhhhheecHHhh-hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHH
Q psy6547         100 VR-PD--IVI--LGKALSGGLYPISAVLADDEVM-GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKM  169 (266)
Q Consensus       100 ~~-~d--~~~--~sK~~~~g~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~  169 (266)
                      -. -+  +++  ..|.+++= -..+++..+..+- +.++. ....+|.+++.+.+++...+...++.   +.++++..+.
T Consensus       353 a~~~~~i~vtQStHKtL~al-TQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~  431 (714)
T PRK15400        353 RVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIER  431 (714)
T ss_pred             CCCCCceEEEEchhhcccch-hHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            11 12  444  66988752 2333443322111 11111 13455566778888888877777763   3577888888


Q ss_pred             HHHHHHHhhccccc-------CCCcccE------E-------ecCcc---------ce-eeEEEEeeC--------ccch
Q psy6547         170 GEIFRSELSSPANK-------SKASFKL------S-------SGGLK---------KS-INTLILSVS--------AILE  211 (266)
Q Consensus       170 ~~~l~~~l~~~~~~-------~~~~~~~------~-------~~g~~---------~~-~~~~~~~~~--------~~~~  211 (266)
                      ...+|+.+.+ +..       ..+..+.      +       -.|.+         -| =+.+.++.-        .+..
T Consensus       432 a~~~R~~l~~-~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gip  510 (714)
T PRK15400        432 AIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIP  510 (714)
T ss_pred             HHHHHHHHHh-CCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCC
Confidence            8888888876 321       0110000      0       00100         00 123333220        1456


Q ss_pred             HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +..+.+.|.++||.+.-.+...+-+.++...|+++++++++.|.++-+
T Consensus       511 g~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        511 ASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            788999999999999988889999998999999999999999987643

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.94  E-value=1.6e-07  Score=86.80  Aligned_cols=222  Identities=13%  Similarity=0.043  Sum_probs=136.5

Q ss_pred             CHHHHHHHHhcCCCE----EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE-EEeccccCcCCcCcccc-ccc--C
Q psy6547          27 DVDALEAKLKSNPNI----CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF-IADEVQTGLGRTGKLLA-IHY--E   98 (266)
Q Consensus        27 d~~~l~~~l~~~~~~----~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l-i~De~~~~~~~~g~~~~-~~~--~   98 (266)
                      +.+.+++.++++++.    ++++.+|.+  .|.+.    ++++|.++|   |+.+ ++||+|.++......+. ...  .
T Consensus       281 ~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~y----d~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~  351 (713)
T PRK15399        281 TRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLY----NTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSG  351 (713)
T ss_pred             cHHHHHHHHHhCCCcCCceEEEEECCCC--Cceee----CHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhC
Confidence            459999999887644    555566554  67775    777788877   6776 59999976433332121 111  1


Q ss_pred             CCCcCee-----eecccccCCchhhhhheecHHhh-hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHH
Q psy6547          99 DVRPDIV-----ILGKALSGGLYPISAVLADDEVM-GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYK  168 (266)
Q Consensus        99 ~~~~d~~-----~~sK~~~~g~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~  168 (266)
                      +-.+|.+     +..|.+++= -..+++..+..+- +.++. ....+|.+++.+.+++...+...++.   +.++++..+
T Consensus       352 ~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~  430 (713)
T PRK15399        352 ERVPGKVIFETQSTHKMLAAF-SQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVE  430 (713)
T ss_pred             CCCCCeeeeeeeehhcccccc-chheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            1134554     477988752 2334444422211 11111 13455566788888888887777763   347788888


Q ss_pred             HHHHHHHHhhccccc-------CCCccc-E------------EecCcc---------ce-eeEEEEee--------Cccc
Q psy6547         169 MGEIFRSELSSPANK-------SKASFK-L------------SSGGLK---------KS-INTLILSV--------SAIL  210 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~-------~~~~~~-~------------~~~g~~---------~~-~~~~~~~~--------~~~~  210 (266)
                      ....+|+.+.+ +..       ..+..+ .            .-+|.+         -| =+.+.++.        ..+.
T Consensus       431 ~a~~fR~~l~~-~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi  509 (713)
T PRK15399        431 RALHFRKEVQR-LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGI  509 (713)
T ss_pred             HHHHHHHHHHh-ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCC
Confidence            88888888876 321       011000 0            000000         00 13333331        1156


Q ss_pred             hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       211 ~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+..+.+.|.++||.+.-.+...+-+.++...|+++++++++.|.++-+
T Consensus       510 ~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        510 PAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             CHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            7888999999999999998888998888899999999999999987743

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.91  E-value=1.5e-07  Score=82.63  Aligned_cols=226  Identities=15%  Similarity=0.107  Sum_probs=137.2

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C---cCCc--Ccccccc--
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LGRT--GKLLAIH--   96 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~---~~~~--g~~~~~~--   96 (266)
                      |+++|++.|+..  ++++++.++-..|..|..+.|.+.++++.++|++||++||.|.++. +   |...  .......  
T Consensus       162 D~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~  241 (460)
T PRK13237        162 DLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIK  241 (460)
T ss_pred             CHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHh
Confidence            899999999653  2455555555455554455888999999999999999999999993 2   1100  1000000  


Q ss_pred             ----cCCCCcCeee--ecccccCCchhhhhhee-cHHhhhccCCC----CCCCCCCCcHH-HHHHHHHHHHHHhhccHHH
Q psy6547          97 ----YEDVRPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPG----THGSTYGGNPL-ACKLAMTALDVILEENMIE  164 (266)
Q Consensus        97 ----~~~~~~d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~----~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~  164 (266)
                          ...-..|.++  ++|.++.+ . .|+++. ++++.+.++..    .-..++.+-.- -+.+....|.....+++.+
T Consensus       242 ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~  319 (460)
T PRK13237        242 EIVHEMFSYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIE  319 (460)
T ss_pred             HHhhhccCcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHH
Confidence                0112356665  45777754 2 455555 66777776643    22334443222 3334444555555567888


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceec----------
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTK----------  227 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~----------  227 (266)
                      +..+..++|.+.|.+ .+-+.+   .+..|+   -++++...      ...+.+..++.+|- +-||=..          
T Consensus       320 ~ri~~~~~l~~~L~~-~Gvpv~---~p~ggH---~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~  392 (460)
T PRK13237        320 HRVGQVRYLGEKLLA-AGVPIV---EPVGGH---AVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRD  392 (460)
T ss_pred             HHHHHHHHHHHHHHH-CCCcee---cCCCce---EEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccC
Confidence            888899999999987 443222   123444   45554322      11345777777774 5566331          


Q ss_pred             cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 ~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |.       .-..+|++.+ -.-|.+.+|...++|....++.
T Consensus       393 ~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  434 (460)
T PRK13237        393 PKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR  434 (460)
T ss_pred             CCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence            10       1267899876 4558889999999998887653

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.89  E-value=2.6e-07  Score=80.97  Aligned_cols=225  Identities=15%  Similarity=0.114  Sum_probs=136.2

Q ss_pred             CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCcCccccc--cc-
Q psy6547          27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGKLLAI--HY-   97 (266)
Q Consensus        27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~g~~~~~--~~-   97 (266)
                      |+++|++.|+...  .++++.++...|..|..+++.+.++++.++|++||++||.|.++..    |.........  .. 
T Consensus       155 D~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~  234 (450)
T TIGR02618       155 DLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIA  234 (450)
T ss_pred             CHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHH
Confidence            8999999996421  4566676666665544558999999999999999999999999931    1100000000  00 


Q ss_pred             -----CCCCcCeeeec--ccccCCchhhhh-he-ecHHhhhccCCCC----CCCCCCC-cHHHHHHHHHHHHHHhhccHH
Q psy6547          98 -----EDVRPDIVILG--KALSGGLYPISA-VL-ADDEVMGTLVPGT----HGSTYGG-NPLACKLAMTALDVILEENMI  163 (266)
Q Consensus        98 -----~~~~~d~~~~s--K~~~~g~~~~g~-~~-~~~~~~~~~~~~~----~~~~~~~-~~~~~~a~~~~l~~~~~~~~~  163 (266)
                           ..-..|.+++|  |..+   .++|. ++ .++++.++++...    -..++++ +.-.+.+...+|+..-.+.+.
T Consensus       235 ei~~e~~~~aD~~~~S~~Kd~~---~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~  311 (450)
T TIGR02618       235 EILKEMMSYADGCTMSGKKDCL---VNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYI  311 (450)
T ss_pred             HHHHHHhccCcEEEEeeccCCC---CCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHH
Confidence                 01124554433  3334   34444 44 4778877766431    1123322 111344445556655555677


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHH-HCCceec---------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMK-DAGLVTK---------  227 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~gi~~~---------  227 (266)
                      ++.....++|.+.|.+ .+-+.+   .+..|+   .+.++...-      ....+..++.+|- +-||=..         
T Consensus       312 ~~r~~~a~~La~~L~~-~Gvpv~---~p~ggh---~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~  384 (450)
T TIGR02618       312 EHRVKQVRYLGDKLKA-AGVPIV---EPVGGH---AVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGR  384 (450)
T ss_pred             HHHHHHHHHHHHHHHH-CCCccc---CCCCcc---eEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceeccc
Confidence            8888889999999998 543222   234566   777765431      1345677777774 5566321         


Q ss_pred             -cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 -PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 -~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                       |.       .-..+|++.+ -.-|.+.+|...++|....++.
T Consensus       385 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  427 (450)
T TIGR02618       385 NNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR  427 (450)
T ss_pred             CCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence             10       1267899876 4558889999999998887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.89  E-value=1.9e-07  Score=80.30  Aligned_cols=199  Identities=13%  Similarity=0.035  Sum_probs=134.8

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeeccccc-CCch
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLY  116 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~  116 (266)
                      +++.+.+.++++.+.+|... +        ++.+.+++++|+|-+-+ +  .+.++.++.+  +.-+...-|+++ +|  
T Consensus       141 ~~d~~~v~~t~NETstGv~~-~--------~~~~~~~~llvvD~sS~-~--~s~pid~~~~--dvi~agsQKnlgP~G--  204 (364)
T PRK12462        141 DARAPFRHYVSNETVEGLQF-P--------DAAGLPDSPLIADMSSD-F--MSRPFDVEAY--GMVYAHAQKNLGPAG--  204 (364)
T ss_pred             CCCCcEEEEccCCCCceEec-C--------cccccCCCeEEEEcCch-h--hCCCCChHHc--cEEEeeccccCCCCc--
Confidence            44678888998888888874 2        33334689999997764 3  2344455544  233333669998 44  


Q ss_pred             hhhhheecHHhhhccCCC-----------CCCCCC-CCcHHHHHHHHHHHHHHhhc--c---HHHHHHHHHHHHHHHhhc
Q psy6547         117 PISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE--N---MIENAYKMGEIFRSELSS  179 (266)
Q Consensus       117 ~~g~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~a~~~~l~~~~~~--~---~~~~~~~~~~~l~~~l~~  179 (266)
                       ++.++.++++++.....           ...+++ +++....-++..+++++.++  +   +.++.++.++.+++.+++
T Consensus       205 -ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~  283 (364)
T PRK12462        205 -VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA  283 (364)
T ss_pred             -eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence             77888899888665431           122333 56666677788888888665  3   667777888888888887


Q ss_pred             cccc--CC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         180 PANK--SK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       180 ~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                       ...  .. +....+ +-+   -+.|.+.+  .....+|.+.+.++|+....+  ..+.+|.|+.-.++.|+++++++-+
T Consensus       284 -~~~~~~~~~~~~~R-S~m---nv~f~~~~--~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm  356 (364)
T PRK12462        284 -LNEVIDCHAHRAAR-STM---NVAFRFRQ--PRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFL  356 (364)
T ss_pred             -CCCcccCCCChhhc-Ccc---eEEEEcCC--HHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHH
Confidence             442  11 221112 223   35566655  445788999999999998654  3467999999999999999888888


Q ss_pred             HHHHHH
Q psy6547         255 INTINT  260 (266)
Q Consensus       255 ~~~~~~  260 (266)
                      .++-++
T Consensus       357 ~~f~~~  362 (364)
T PRK12462        357 KDFAIR  362 (364)
T ss_pred             HHHHHh
Confidence            877654

>KOG3846|consensus

Probab=98.84  E-value=4e-07  Score=74.63  Aligned_cols=221  Identities=13%  Similarity=0.111  Sum_probs=145.0

Q ss_pred             HHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          28 VDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        28 ~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      .+++-..|++. +++++|+...++--+|..+    ++.+|-..-+..|+++-+|=+|. +|.  -+.-+..||++...++
T Consensus       201 teDILd~IEkngDeiA~v~fSGvqyYTGQ~F----di~aIT~Agq~kgc~VGfDLAHA-vgN--VpL~LHdWgVDFACWC  273 (465)
T KOG3846|consen  201 TEDILDTIEKNGDEIALVCFSGVQYYTGQYF----DIGAITFAGQFKGCLVGFDLAHA-VGN--VPLQLHDWGVDFACWC  273 (465)
T ss_pred             HHHHHHHHHhcCCeEEEEEeecceeeccccc----chhhhhhcccCCCcEechhhhhh-hcC--CceEEeecCCceEEEe
Confidence            55666666553 4788888999998899998    89999977788899999999994 322  2334566888888888


Q ss_pred             ecccccCCchhhhhheecHHhhhccCCC-------------------------CCCCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547         107 LGKALSGGLYPISAVLADDEVMGTLVPG-------------------------THGSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus       107 ~sK~~~~g~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                      .-|.+++|--.+|.+...++......+.                         .-.....++-+...+...+|+....  
T Consensus       274 SYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~  353 (465)
T KOG3846|consen  274 SYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN  353 (465)
T ss_pred             eecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh
Confidence            8898873312355555555433222111                         0011112334456666677776654  


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccC-CC-----------cccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKS-KA-----------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~-~~-----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                       ++++.+.--++.++...++...+.. ..           +......|+   -+.+.+..    ...++.++|.++|++.
T Consensus       354 ~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGc---QLsl~Fss----p~~~vfqeL~krGv~~  426 (465)
T KOG3846|consen  354 INELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGC---QLSLYFSS----PTPKVFQELHKRGVIG  426 (465)
T ss_pred             HHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccc---eEEEEeCC----CchHHHHHHHHcCeec
Confidence             3455555555555555555422221 11           111122355   55555544    4578999999999999


Q ss_pred             ccCCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         227 KPISNNIIRLSP-ALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       227 ~~~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ....++.||++| ++.++-.|+.+++..|.+++..+.
T Consensus       427 DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  427 DKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             cccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence            988899999987 688999999999999999987753

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.78  E-value=2e-08  Score=77.05  Aligned_cols=103  Identities=21%  Similarity=0.341  Sum_probs=69.8

Q ss_pred             ccCCCCCCceeecCCC-----H--HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          12 EFGPHMPGYNIIPYND-----V--DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d-----~--~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .....+.+++.++.++     .  +++++.. ..+++++++++++++++|...    ++++|.++|+++|+++|+|++|.
T Consensus        58 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~g~~~----~~~~l~~~~~~~~~~li~D~a~~  132 (170)
T cd01494          58 AAELAGAKPVPVPVDDAGYGGLDVAILEELK-AKPNVALIVITPNTTSGGVLV----PLKEIRKIAKEYGILLLVDAASA  132 (170)
T ss_pred             HHHhcCCEEEEeccCCCCccchhhhhhhhcc-ccCceEEEEEecCcCCCCeEc----CHHHHHHHHHHcCCEEEEecccc
Confidence            3445566777776542     1  1344433 244789999999998888875    56999999999999999999997


Q ss_pred             CcCCcCcccccccCCCCcCeeeec--ccccCCchhhhhhee
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLA  123 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~  123 (266)
                      ++......  .......+|+++.|  |++++  .+.|++++
T Consensus       133 ~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~  169 (170)
T cd01494         133 GGASPAPG--VLIPEGGADVVTFSLHKNLGG--EGGGVVIV  169 (170)
T ss_pred             cccccccc--cccccccCCEEEEEcccccCC--CceEEEEe
Confidence            65332211  11223457777755  99986  46787765

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.76  E-value=2.6e-07  Score=80.57  Aligned_cols=217  Identities=14%  Similarity=0.125  Sum_probs=115.3

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcC
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTG   90 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g   90 (266)
                      ...+.+-+|+.++..+-....     ++++++|++..++. -|.+-    ++++|.+++|++|.++++ .+- ..+   +
T Consensus       174 ~a~~~g~~iv~~~~~~~~~~d-----~~~~a~v~vq~Pn~-~G~~e----d~~~i~~~~h~~gal~~~-~ad~~aL---~  239 (429)
T PF02347_consen  174 YAAPLGIEIVEVPLDEDGTTD-----DDDTAAVMVQNPNT-FGVFE----DIKEIADIAHAAGALVIV-GADPNAL---G  239 (429)
T ss_dssp             HCCHCCEEEEEE-BBTTCSB------STTEEEEEEESS-T-TSB------THHHHHHHHHHTT-EEEE-CGGCCGC---C
T ss_pred             hhhhCCeEEEEecccccCCcc-----ccCeEEEEeecCCC-CceEe----eHHHHHHHHHHcCCEEEE-ecCHHHH---h
Confidence            346677788888765311111     45789998886553 56553    699999999999999886 333 111   1


Q ss_pred             cccccccCCCCcCeee-eccccc-----CCchhhhhheecHHhhhccCCC----------------------------CC
Q psy6547          91 KLLAIHYEDVRPDIVI-LGKALS-----GGLYPISAVLADDEVMGTLVPG----------------------------TH  136 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~-~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~----------------------------~~  136 (266)
                      -.-+-..+  ..|+++ .+|.||     || -..|++.+++++.+.+...                            +.
T Consensus       240 ~l~~Pge~--GADI~vg~~Q~fg~p~~~GG-P~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKA  316 (429)
T PF02347_consen  240 GLKSPGEY--GADIVVGEHQTFGIPMGFGG-PGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKA  316 (429)
T ss_dssp             TC--GGGG--T-SEEEECCTTTT---CCC--S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCS
T ss_pred             CcCChhhc--CccEEeeCCCCCcccCCCCC-CCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccch
Confidence            11111223  467766 566665     45 5678899999888877432                            11


Q ss_pred             CCCCCCcHHHH-HHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchH
Q psy6547         137 GSTYGGNPLAC-KLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       137 ~~~~~~~~~~~-~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      .+.++++...+ .++..-+..++.+   ++-++...++.++.++|.+ .....+.     ...   |+-+..........
T Consensus       317 tSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~-~~~~~~~-----~~~---f~e~v~~~~~~~~~  387 (429)
T PF02347_consen  317 TSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKK-IYGLPFD-----NPF---FFEFVVVFSKDKEV  387 (429)
T ss_dssp             TT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTBECSS-----SSS---BSSEEEEESS-HHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccC-----CCC---ceeeeeecCCcHHH
Confidence            23333344333 2344444555554   4667788899999999998 4221111     122   44444433212223


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      .++.+++.+.|+.......+.+.+|+.-..|++|||++++.|
T Consensus       388 ~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  388 EELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             HHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             HHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence            345555566676665555679999999999999999999864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.76  E-value=1e-06  Score=83.77  Aligned_cols=214  Identities=10%  Similarity=0.084  Sum_probs=131.8

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      .+.+-+|+.+   |+++|+..+    +++++++. +.+..|.+.    ++++|.+++|++|.+++++--...++-.   -
T Consensus       175 ~~~g~~v~~~---~~~~l~~~~----~~~~v~~q-~Pn~~G~ie----d~~~i~~~~h~~gal~~~~ad~~al~ll---~  239 (939)
T TIGR00461       175 KPFGIEVIVV---DCSDIKKAV----DVFGCLLQ-YPATDGSIL----DYKQLIDALHSHKSLVSVAADLMALTLL---T  239 (939)
T ss_pred             HhcCcEEEEE---cHHHHhhcC----CEEEEEEE-CCCCCeEEe----cHHHHHHHHHHcCCEEEEEechHHhCCc---C
Confidence            4667777777   455666555    46666554 334467664    8999999999999999986433322111   1


Q ss_pred             ccccCCCCcCeee-eccccc-----CCchhhhhheecHHhhhccCCCCC----------------------------CCC
Q psy6547          94 AIHYEDVRPDIVI-LGKALS-----GGLYPISAVLADDEVMGTLVPGTH----------------------------GST  139 (266)
Q Consensus        94 ~~~~~~~~~d~~~-~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~~----------------------------~~~  139 (266)
                      .-..  ...|+++ .+|.|+     || --.|++.+++++.+.+.....                            .++
T Consensus       240 ~Pge--~GaDi~vg~~q~fg~p~g~GG-P~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSN  316 (939)
T TIGR00461       240 PPGH--YGADIVLGSSQRFGVPMGYGG-PHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSN  316 (939)
T ss_pred             CHHH--cCCcEEeeCCCccCCCCCCCC-CceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcc
Confidence            1112  3466665 445444     35 447888888887777643200                            011


Q ss_pred             CCCcHHHHH-HHHHHHHHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         140 YGGNPLACK-LAMTALDVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       140 ~~~~~~~~~-a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      ...+...++ .+..-+..+..++   +-+++..++.++.+.|.+ .+......     ..   |-.|.+.-. ..+++++
T Consensus       317 ICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~-----~f---F~~~~v~~~-~~~~~~i  386 (939)
T TIGR00461       317 ICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINK-----TW---FDTLTVKVG-NGISSEL  386 (939)
T ss_pred             hhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCC-----Cc---cceEEEEeC-CCCHHHH
Confidence            111221111 1121234445543   456777888889999888 55322211     11   223333220 1357899


Q ss_pred             HHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      .++++++||.++....+.+++|+.-.+|++|++.+++.+.
T Consensus       387 ~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       387 LKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             HHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            9999999999987767899999999999999999999994

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.75  E-value=1.6e-06  Score=75.58  Aligned_cols=224  Identities=13%  Similarity=0.101  Sum_probs=136.0

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc---C-c------CCcCcccc
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT---G-L------GRTGKLLA   94 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~---~-~------~~~g~~~~   94 (266)
                      |+++|++.|+.+  +++..+.++-.+|..|..++|.+.++++.++|++||+++++|.+-.   . |      +..+....
T Consensus       168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~  247 (467)
T TIGR02617       168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIE  247 (467)
T ss_pred             CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHH
Confidence            899999999753  2455555555566666777999999999999999999999997661   1 1      11121100


Q ss_pred             -c--cc-CCCCcCeeeecccccCCchhhhhheecHH----hhhccCC----CCCCCCCCCcHH-HHHHHHHHHHHHhhcc
Q psy6547          95 -I--HY-EDVRPDIVILGKALSGGLYPISAVLADDE----VMGTLVP----GTHGSTYGGNPL-ACKLAMTALDVILEEN  161 (266)
Q Consensus        95 -~--~~-~~~~~d~~~~sK~~~~g~~~~g~~~~~~~----~~~~~~~----~~~~~~~~~~~~-~~~a~~~~l~~~~~~~  161 (266)
                       .  +. ...+--.+++||.++..+  .|+++++++    +.+..+.    .....||++-.- -+.+....|+..-.++
T Consensus       248 eI~rE~~~~aDsvt~slsKglgApv--Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~  325 (467)
T TIGR02617       248 QITRETYKYADMLAMSAKKDAMVPM--GGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD  325 (467)
T ss_pred             HHHHHhhccCCEEEEEcCCCCCCcc--cceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHH
Confidence             0  00 112334455889888441  334555544    3333332    234455543222 2444444566655677


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceec-------
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTK-------  227 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~-------  227 (266)
                      +.++-....++|.++|++ .   +++. ....|+   =+.++...      ...+.+..++.+|- +-||=..       
T Consensus       326 yl~~ri~qv~yl~~~L~~-~---Gvpi-~~~Ggh---av~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~  397 (467)
T TIGR02617       326 WLAYRINQVQYLVNGLEE-I---GVVC-QQAGGH---AAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLL  397 (467)
T ss_pred             HHHHHHHHHHHHHHHHHh-C---CCcE-EecCcc---EEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceec
Confidence            888888889999999988 3   3444 333344   34443211      11345777777774 6566321       


Q ss_pred             ---cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 ---PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 ---~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~  260 (266)
                         |.       .-..+|++.+ -.-|.+.+|...+++.+..++
T Consensus       398 ~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             ccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence               10       1267899876 456888999999999988665

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.74  E-value=2.7e-06  Score=72.81  Aligned_cols=223  Identities=14%  Similarity=0.124  Sum_probs=141.9

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE--eccccCcCCcC
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTG   90 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~--De~~~~~~~~g   90 (266)
                      ..|++-+|+.++++|+++|+.. + +.++.++++..+...+...    .+++++.+.+|++|.++++  |-.--++    
T Consensus       185 a~~~g~~i~~~~~~d~~~l~~~-~-~~~~~gv~vQyP~~~G~~~----~d~~~l~~~~h~~~al~~v~aDplaL~L----  254 (450)
T COG0403         185 AEGLGIEIEVVDADDLDDLESA-D-DGDVFGVLVQYPNTFGIVE----EDLRALIEAAHSAGALVIVAADPLALGL----  254 (450)
T ss_pred             cccCceEEEEeccchhhhhhhc-c-ccCeEEEEEecCCCCCccc----hhHHHHHHHHhhcCCEEEEEechhHhhc----
Confidence            4678899999999999999988 3 4478999988766433244    3799999999999988773  3222111    


Q ss_pred             cccccccCCCCcCeee-----eccccc-CCchhhhhheecHHhhhccCCC----------------------------CC
Q psy6547          91 KLLAIHYEDVRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPG----------------------------TH  136 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~----------------------------~~  136 (266)
                       .-+-..  ...|+++     |+=.++ || ...|+..+++++.+++...                            +.
T Consensus       255 -L~pPGe--~GADIvvG~~QrfGvPmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKA  330 (450)
T COG0403         255 -LKPPGE--FGADIVVGSAQRFGVPMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKA  330 (450)
T ss_pred             -cCCccc--cCCceEEecCcccCCCcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhcc
Confidence             001111  3466666     555555 66 5678888888887776543                            11


Q ss_pred             CCCCCCcHHHHHHHH-HHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchH
Q psy6547         137 GSTYGGNPLACKLAM-TALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~-~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      .++.+++...++.+. ..+-+++.+   ++..+..+...++.++|++ .+. ++.  +....+   |-.|.+.-. ....
T Consensus       331 TSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~-~~~-g~~--~~~~~f---Fdt~~v~~~-~~~~  402 (450)
T COG0403         331 TSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE-IGA-GVE--LVFDHF---FDTFTVRVP-EEVA  402 (450)
T ss_pred             chhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-cCC-ceE--eccccc---eeeEEEecc-hhHH
Confidence            222333333322222 122233443   4667778888889898886 331 111  111133   433444331 1346


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ..+.++....|+-++......+-+++.-..|+++++.+++.+...
T Consensus       403 ~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         403 EALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             HHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence            667777788899998877778889988899999999999988764

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.71  E-value=2e-07  Score=82.89  Aligned_cols=185  Identities=16%  Similarity=0.128  Sum_probs=113.0

Q ss_pred             CHHHHHHHHhcCCCEEE--EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC-cCc---ccccccCCC
Q psy6547          27 DVDALEAKLKSNPNICA--FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGK---LLAIHYEDV  100 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~--i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~-~g~---~~~~~~~~~  100 (266)
                      |++++++++++.  +..  |+.+-....+|.+    +++++|.++|+++|+++++|.+++|+.. ...   .|.+...++
T Consensus       194 d~~~l~~~i~~~--t~~g~vV~~aGtT~~G~i----Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~v  267 (460)
T COG0076         194 DVDALEEAIDEN--TIGGVVVGTAGTTDTGSI----DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGV  267 (460)
T ss_pred             CHHHHHHHHHhh--ccCceEEEEecCCCCCcc----CCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCc
Confidence            799999999653  333  5555555556665    5999999999999999999999988521 111   112222233


Q ss_pred             CcCeeeecccccCCchhhhhheecHH--hhhccC---CCCC-----CCCCCCcHH--HHHHHHHHHHHHhhcc---HHHH
Q psy6547         101 RPDIVILGKALSGGLYPISAVLADDE--VMGTLV---PGTH-----GSTYGGNPL--ACKLAMTALDVILEEN---MIEN  165 (266)
Q Consensus       101 ~~d~~~~sK~~~~g~~~~g~~~~~~~--~~~~~~---~~~~-----~~~~~~~~~--~~~a~~~~l~~~~~~~---~~~~  165 (266)
                      +--.+.+.|.+... ++.|+++.+.+  +.+.+.   .+..     ..+..+++.  ..++.+..++.++.++   +.++
T Consensus       268 dSIt~d~HK~g~aP-~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~  346 (460)
T COG0076         268 DSITVDGHKYGLAP-IGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDR  346 (460)
T ss_pred             eEEEECcccccCCC-CCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHH
Confidence            33333477988877 78888887654  333222   1111     111122222  4566677777776665   4555


Q ss_pred             HHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccch-HHHHHHHHHHCCceec
Q psy6547         166 AYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILE-VYDVCIKMKDAGLVTK  227 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~  227 (266)
                      ..++++++.+++++ .+. ..+..   +..   |.+.|..++  ..+ ..+...++...|..+.
T Consensus       347 ~~~~a~~la~~l~~-~~~~e~~~~---p~l---~~V~fr~~~--~~~~~~~~~~~~~~~gw~v~  401 (460)
T COG0076         347 TLELARYLAEELEK-LGDFELVNE---PEL---PIVAFRLKD--DEDTLADLSERLDRRGWQVP  401 (460)
T ss_pred             HHHHHHHHHHHHHh-CCCcEeecC---Ccc---ceEEEEcCC--cccchhchHHHHHhcCceee
Confidence            66899999999998 542 22221   222   478888855  222 3445566666677665

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.63  E-value=5.9e-07  Score=76.76  Aligned_cols=220  Identities=11%  Similarity=0.065  Sum_probs=116.8

Q ss_pred             CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC-cc---cccccCC-C
Q psy6547          27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KL---LAIHYED-V  100 (266)
Q Consensus        27 d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g-~~---~~~~~~~-~  100 (266)
                      |++++|+.+++ .++..+++++.+....+-..   +.+++|+++|++||++.++..+|+ ....- ..   -+. ..| +
T Consensus       140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~---D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~-~~GRv  214 (389)
T PF05889_consen  140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLP---DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAW-RVGRV  214 (389)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHH-HHSTC
T ss_pred             cHHHHHHHHHHhCCCCeEEEEEecCccCCCCC---ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHH-hcCCc
Confidence            58889999976 33556666666555455443   459999999999999999999993 31000 00   011 123 3


Q ss_pred             CcCeeeecccccCCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547         101 RPDIVILGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  176 (266)
Q Consensus       101 ~~d~~~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~  176 (266)
                      +.++-+..|-|--| ...+.+.+. +..++......-...+. +| ..-. ...|..++.   ..++...++.-.++.++
T Consensus       215 da~vqS~dkNF~VP-vGgai~As~~~~~i~~vs~~YpGRas~-sp-~ld~-~itLl~LG~~g~~~ll~~r~~~f~~l~er  290 (389)
T PF05889_consen  215 DAFVQSTDKNFMVP-VGGAIMASFDPSGILAVSKEYPGRASA-SP-SLDL-FITLLSLGCTGYGALLKERKASFPYLKER  290 (389)
T ss_dssp             SEEEEEHHHHHCEE-SSHEEEEESSHHHHHHHHHTSHSHBTS-HH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeecCCCEEec-CCCcEEEecCHHHHHHHHHHhhhhhhc-cc-chHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            44444566755522 112233333 33443332211111111 11 1222 222333333   34666677777788888


Q ss_pred             hhcccccCC--CcccEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCceec----cC---C--------CCEEEE
Q psy6547         177 LSSPANKSK--ASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVTK----PI---S--------NNIIRL  236 (266)
Q Consensus       177 l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~----~~---~--------~~~iR~  236 (266)
                      |++|..+..  +.. .+....   -+.+.+..-.   ..+...|...|..+||...    +.   .        ..++-+
T Consensus       291 l~~~aee~~e~ll~-~p~N~i---s~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~  366 (389)
T PF05889_consen  291 LKKWAEEVGERLLE-TPRNHI---SMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTA  366 (389)
T ss_dssp             HHHHHHHTTEEBSS-STT-SS---EEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEE
T ss_pred             HHHHHHHhhhhhcC-CCCCCe---eEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHH
Confidence            887433321  222 112223   3555554211   1245778889999977533    21   1        278888


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +..+..++||+|.++++|++.++
T Consensus       367 AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  367 ASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             EE-TT--HHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhC
Confidence            88899999999999999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.59  E-value=3.3e-07  Score=78.34  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             CCCCCCceeecC---CCHHHHHHHHhcCCCEEEEE--EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPY---NDVDALEAKLKSNPNICAFM--VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~--~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .-.+.+++.|-.   ..+.+.+.+|  .+++++++  .++.+..++++     ..+++.++|+++|+++++|.+-...-+
T Consensus       129 ~~aG~~l~EvG~tn~t~~~d~~~AI--ne~ta~llkV~s~~~~f~~~l-----~~~~l~~ia~~~~lpvivD~aSg~~v~  201 (395)
T COG1921         129 RLAGAKLVEVGTTNRTHLKDYELAI--NENTALLLKVHSSNYGFTGML-----SEEELVEIAHEKGLPVIVDLASGALVD  201 (395)
T ss_pred             HHcCCEEEEecccCcCCHHHHHHHh--ccCCeeEEEEeeccccccccc-----cHHHHHHHHHHcCCCEEEecCCccccc
Confidence            334555555553   2588999999  55566666  34344445665     889999999999999999988743211


Q ss_pred             cCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547          89 TGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE  160 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  160 (266)
                       -.+-........+|++++|  |-|+|.  +.|.+++++++++.++.......+.......++..++|+.+...
T Consensus       202 -~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         202 -KEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQP  272 (395)
T ss_pred             -cccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence             1111122234578999988  788764  68999999999999987767777777888999999999988764

>KOG0258|consensus

Probab=98.59  E-value=6.8e-07  Score=75.40  Aligned_cols=217  Identities=17%  Similarity=0.169  Sum_probs=122.5

Q ss_pred             CHHHHHHHHhcCC---CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cCCcC-cccccc----c
Q psy6547          27 DVDALEAKLKSNP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTG-KLLAIH----Y   97 (266)
Q Consensus        27 d~~~l~~~l~~~~---~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~~~g-~~~~~~----~   97 (266)
                      |.++|++.+++..   +++++++-.+.|++|.+ .+++.+++|..+|.++|++|+.||+|-. ....+ .+.++.    .
T Consensus       199 d~~el~~~~~eA~k~i~~r~lvvINPGNPTGqv-ls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e  277 (475)
T KOG0258|consen  199 DVAELERSVDEARKGINPRALVVINPGNPTGQV-LSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE  277 (475)
T ss_pred             CHHHHHHHHHHHhccCCceEEEEECCCCccchh-hcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence            6888888886532   55666655556668887 8999999999999999999999999944 22233 222221    1


Q ss_pred             CC-CCc------Ceeeeccccc--CCchhhhhhee---cHHhhhccCC---CCCCCCCCCcHHHHHHH----------HH
Q psy6547          98 ED-VRP------DIVILGKALS--GGLYPISAVLA---DDEVMGTLVP---GTHGSTYGGNPLACKLA----------MT  152 (266)
Q Consensus        98 ~~-~~~------d~~~~sK~~~--~g~~~~g~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~a~----------~~  152 (266)
                      .+ ..+      .+.+.||++.  .| .|.|++-.   +++..+.+..   .....+..    +++..          ..
T Consensus       278 mg~~~~~~v~L~SfhSvSKGy~gECG-~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~----GQ~~vdl~VnPP~Pgd~  352 (475)
T KOG0258|consen  278 MGNPYPDNVSLASFHSVSKGYMGECG-QRGGYMESLNRDPRVKQQIKKLASIKLCPQVS----GQKLVDLVVNPPKPGDP  352 (475)
T ss_pred             hcCccCCceEEEeeecccccceeeec-ccCCeeecccCChhHHHHHHHHHhhhhcCCcc----chhhhceecCCCCCCCc
Confidence            11 112      2333789877  68 88888642   3333333211   11111110    01000          00


Q ss_pred             H--HHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE---EeeCc-------cchHHH-HHHHH
Q psy6547         153 A--LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI---LSVSA-------ILEVYD-VCIKM  219 (266)
Q Consensus       153 ~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-------~~~~~~-~~~~l  219 (266)
                      +  +..-+.+.+++.++.+++.+.+.+.+ +..  +.. .+..|.   |..|.   ++...       +..++. .|.+|
T Consensus       353 Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns-~~g--i~c-n~~qGA---MY~fP~i~lP~kaie~A~~~~~~PD~FYc~~L  425 (475)
T KOG0258|consen  353 SYDLFSSEKDGILSSLRSRAKLTEDAFNS-LEG--ISC-NPVQGA---MYLFPQISLPPKAIEAAKALGIAPDEFYCLKL  425 (475)
T ss_pred             chhhhhhhhHhHHHHHHHHhHHHHHHHhh-cCc--eee-ccCccc---eeecccccCCHHHHHHHHHhCCCCcHHHHHHH
Confidence            1  11113456888888899999998888 443  222 233455   55543   33310       222333 35666


Q ss_pred             H-HCCceeccCCC-------CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         220 K-DAGLVTKPISN-------NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       220 ~-~~gi~~~~~~~-------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      + .-||.+.|+++       -.+|..   ..... + +.++++.++=++.
T Consensus       426 Le~tGIcvVPGSGFGQ~~GtyH~R~T---iLp~~-~-~~i~~~~~fH~~f  470 (475)
T KOG0258|consen  426 LEATGICVVPGSGFGQKEGTYHFRTT---ILPPG-L-EIIEKFKKFHAEF  470 (475)
T ss_pred             HHhcCeEEecCCCCCCCCceeEEEEe---ecCch-h-HHHHHHHHHHHHH
Confidence            6 55999999732       346666   22333 4 7777777665443

>KOG1383|consensus

Probab=98.50  E-value=1.9e-05  Score=68.30  Aligned_cols=228  Identities=16%  Similarity=0.179  Sum_probs=140.2

Q ss_pred             CCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh-cCCEEEEeccccCcCCc
Q psy6547          17 MPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRT   89 (266)
Q Consensus        17 ~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~-~g~~li~De~~~~~~~~   89 (266)
                      ..++..|++.      |+..+.+.+  ++++..++.+-.+.+.|.+    +++++|.++..+ +++++.+|.+-.||-..
T Consensus       191 ~v~l~~V~~~~~~~~~D~~k~~~~i--~eNti~lv~~~~~~p~G~~----e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p  264 (491)
T KOG1383|consen  191 EVELREVPLDEGDYRVDPGKVVRMI--DENTIMLVGSLPNFPTGEI----EDVEKLADLLLEIWDIPIHVDACLGGFINP  264 (491)
T ss_pred             EEEEEeeeccccceEecHHHHHHHh--ccceEEEEEEcCCCCccch----hhHHHHHHHHHHHhCCceeecccCcccccc
Confidence            3345555544      799999999  6678999988777777776    599999999999 99999999999887432


Q ss_pred             -CcccccccCCC-CcCeee----ecc-ccc-CCchhhhhheecH-Hhh-hccC-------CCCCCCCCCCcHHH--HHHH
Q psy6547          90 -GKLLAIHYEDV-RPDIVI----LGK-ALS-GGLYPISAVLADD-EVM-GTLV-------PGTHGSTYGGNPLA--CKLA  150 (266)
Q Consensus        90 -g~~~~~~~~~~-~~d~~~----~sK-~~~-~g~~~~g~~~~~~-~~~-~~~~-------~~~~~~~~~~~~~~--~~a~  150 (266)
                       +.. ....++. .|-+.+    -.| +|. .|   ++|++-+. ++. ..+.       .....-|..+|..+  .++.
T Consensus       265 ~~~~-~~~~fdFr~p~V~Sisa~~HKYGl~~~G---~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~  340 (491)
T KOG1383|consen  265 AGYL-NEEEFDFRVPGVTSISADGHKYGLAPAG---SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQ  340 (491)
T ss_pred             cccc-CccccccCCCCceeEeeccceeeeeecC---cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHH
Confidence             221 1122332 222222    223 333 44   66766543 222 1111       00112222333332  3344


Q ss_pred             HHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547         151 MTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       151 ~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  227 (266)
                      .+++-.+..+++   .+++.+....+++.+++ +....+.      |.  |.+.|........+-.++...|.+.|..+-
T Consensus       341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~-i~~i~i~------gk--p~vs~~~~~s~~~~i~elsd~l~~~GW~ln  411 (491)
T KOG1383|consen  341 WAALMSLGEEGYRENTQNIVETARKLREGIEN-IKGIKIV------GK--PLVSFILFGSNDVNIFELSDLLRKKGWILN  411 (491)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-cccceec------CC--CcEEEEEccCCccchhhhhHHHHhcCcCcc
Confidence            455544555554   45566778888888888 5542211      11  467777666445677889999999999876


Q ss_pred             cC-CCCEEEEeccCCCCHHH-HHHHHHHHHHHHHHHhh
Q psy6547         228 PI-SNNIIRLSPALNITEQE-LREGLDIIINTINTMAA  263 (266)
Q Consensus       228 ~~-~~~~iR~~~~~~~t~~~-i~~~~~~l~~~~~~~~~  263 (266)
                      .. .+..+.++....+.+++ .++++..|+++++++..
T Consensus       412 alq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~  449 (491)
T KOG1383|consen  412 ALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKS  449 (491)
T ss_pred             ccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence            32 23466666555555555 58889999999888753

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.49  E-value=2e-07  Score=77.75  Aligned_cols=193  Identities=16%  Similarity=0.107  Sum_probs=112.3

Q ss_pred             EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhh
Q psy6547          42 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISA  120 (266)
Q Consensus        42 ~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~  120 (266)
                      -.=++++++||.|.+-      +   .+.+.-+..+|.|-+|..  .+-.+.. ...+.+.=+-++||.-| +| .|+||
T Consensus       139 ~IElVTSPNNPDG~lr------~---~V~~g~~~k~I~D~AYYW--PhyTpI~-~~aD~DiMLFT~SK~TGHAG-SR~GW  205 (363)
T PF04864_consen  139 YIELVTSPNNPDGQLR------E---AVLNGSSGKVIHDLAYYW--PHYTPIT-APADHDIMLFTLSKLTGHAG-SRFGW  205 (363)
T ss_dssp             EEEEEESS-TTT---------------SSTTTEEEEEEE-TT-S--TTTS----S-B--SEEEEEHHHHCS-GG-G-EEE
T ss_pred             eEEEEeCCCCCccccc------c---hhcCCCCcceeeeeeeec--ccccccC-CCCCCceEEEEEecccCccc-cccce
Confidence            3334666777777642      2   233455566899999942  2222211 11222333445899999 88 99999


Q ss_pred             heec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----c----cH----HHHHHHHHHHHHHHhhccccc----
Q psy6547         121 VLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----E----NM----IENAYKMGEIFRSELSSPANK----  183 (266)
Q Consensus       121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~----~~----~~~~~~~~~~l~~~l~~~~~~----  183 (266)
                      .+.. +++.+++..+...+|.+.|.=+|.-++..|+.+-.    +    ++    .+.++++.+.|++.+.. -..    
T Consensus       206 AlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~-S~rFSLq  284 (363)
T PF04864_consen  206 ALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSA-SKRFSLQ  284 (363)
T ss_dssp             EEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCC-SSSEEE-
T ss_pred             eeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHh-cCceecC
Confidence            8874 46667776666677788887777777777766532    1    22    34456666667666664 110    


Q ss_pred             -------CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEEEEeccCCCCHHHHHHHH
Q psy6547         184 -------SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGL  251 (266)
Q Consensus       184 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~  251 (266)
                             ..+.......+.   |.|+.|...  . .++....|++.||..+.+     +..++|+|  ...++++.+.++
T Consensus       285 ~~~~~yC~ff~~~~~psPa---fAWlkCe~e--e-d~DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~  356 (363)
T PF04864_consen  285 KFSPQYCNFFKRVREPSPA---FAWLKCERE--E-DEDCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLL  356 (363)
T ss_dssp             --SCEEETTTTCEEE---S---EEEEEESSC--G-GSSHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHH
T ss_pred             cCCchhccccccccCCCCC---eEEEecCCc--c-cccHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHH
Confidence                   112221234566   899999862  2 255677788999998865     56899999  778999999999


Q ss_pred             HHHHH
Q psy6547         252 DIIIN  256 (266)
Q Consensus       252 ~~l~~  256 (266)
                      ++|..
T Consensus       357 ~rL~~  361 (363)
T PF04864_consen  357 ERLSK  361 (363)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            99875

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG2040|consensus

Probab=98.41  E-value=2.2e-05  Score=70.55  Aligned_cols=236  Identities=16%  Similarity=0.105  Sum_probs=147.1

Q ss_pred             cccCCCCCCceeecCC-----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .+.+..+.+|+.|...     |..+|++..+++. +.++++++.+. +.|..   .+.++.++++.++||.-+..|.+-.
T Consensus       645 ASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPS-T~Gvf---E~~i~d~cd~iHehGGQVYlDGANM  720 (1001)
T KOG2040|consen  645 ASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPS-THGVF---EEGIDDICDIIHEHGGQVYLDGANM  720 (1001)
T ss_pred             hhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccc-ccccc---cccHHHHHHHHHhcCCEEEecCCCc
Confidence            3667778888888743     7899999988765 77888877544 34443   4678999999999999999997762


Q ss_pred             ----CcCCcCcccccccCCCCcCeeeeccccc----CCchhhhhheecHHhhhccCCCCC-----------CCCC----C
Q psy6547          85 ----GLGRTGKLLAIHYEDVRPDIVILGKALS----GGLYPISAVLADDEVMGTLVPGTH-----------GSTY----G  141 (266)
Q Consensus        85 ----~~~~~g~~~~~~~~~~~~d~~~~sK~~~----~g~~~~g~~~~~~~~~~~~~~~~~-----------~~~~----~  141 (266)
                          |+-+.|.      +|-++.=.-+.|+|+    ||.-.+|-+...+.+...+.....           ..+.    .
T Consensus       721 NAqVGlc~pGd------~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~  794 (1001)
T KOG2040|consen  721 NAQVGLCRPGD------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPW  794 (1001)
T ss_pred             cceecccCCcc------ccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCC
Confidence                2212221      222222233778776    331445556566655554432211           1111    2


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHhhcccccCCCcccEEec-CccceeeEEEEee---CccchHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIEN---AYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSV---SAILEVYD  214 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~~~~~~  214 (266)
                      +|.......++-++.+...++...   ..-++.++.++|++ -....+.. ..+. +.   =|.+++.+   ..+.++.+
T Consensus       795 Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~-hYkil~~~-~~~~vaH---EFIlD~r~fK~~agieavD  869 (1001)
T KOG2040|consen  795 GSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES-HYKILFRG-ENGLVAH---EFILDLRPFKKTAGIEAVD  869 (1001)
T ss_pred             CcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh-ccceeEec-CCcceee---eeeeechhhccccCCcHHH
Confidence            344445566777777777654332   23367778888886 11111111 1111 11   23333332   12578999


Q ss_pred             HHHHHHHCCceec---cCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         215 VCIKMKDAGLVTK---PISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       215 ~~~~l~~~gi~~~---~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++|.+.|+..-   ..-.+++++-|.-.-+.+++|++++++-++-+++
T Consensus       870 vAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI  919 (1001)
T KOG2040|consen  870 VAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEI  919 (1001)
T ss_pred             HHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999752   2346899999988889999999999998776654

>KOG0628|consensus

Probab=98.38  E-value=1.8e-05  Score=68.32  Aligned_cols=225  Identities=13%  Similarity=0.108  Sum_probs=119.2

Q ss_pred             CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC-cC
Q psy6547          27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR-PD  103 (266)
Q Consensus        27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~-~d  103 (266)
                      +.+.|+++++++.  ..--+++.-+.+++|.  ..-+.+.+|..+|+++|++|.+|.+|.|-...-+.+..-..|+. .|
T Consensus       218 r~~~L~~AIe~D~arGlIPf~v~at~GTT~~--ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aD  295 (511)
T KOG0628|consen  218 RGDTLRKAIEEDIARGLIPFFVCATLGTTSS--CAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYAD  295 (511)
T ss_pred             CHHHHHHHHHHHHhCCCccEEEEEeecCccc--cccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhc
Confidence            4677777776532  2333344444554544  45689999999999999999999999763221111111111211 11


Q ss_pred             e--eeeccccc-----------CCchhhhhhe-ecHHhhhc-----cCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547         104 I--VILGKALS-----------GGLYPISAVL-ADDEVMGT-----LVPGTHGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus       104 ~--~~~sK~~~-----------~g~~~~g~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      -  ...+|++-           .| ..+.-.. +.+-.++.     ...+.+++---+-.+-..-..-.++.+..+++++
T Consensus       296 Sfn~n~hK~~~vnfDCs~lWvkd~-~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~  374 (511)
T KOG0628|consen  296 SFNFNPHKWLLVNFDCSPLWVKDG-TKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQN  374 (511)
T ss_pred             cccCChhheeEEeeeeecceeecC-ceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHH
Confidence            0  01334332           12 1111111 11111111     1122333333333333444455556666677777


Q ss_pred             HHHH---HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC---CCCEEEEe
Q psy6547         165 NAYK---MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI---SNNIIRLS  237 (266)
Q Consensus       165 ~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~---~~~~iR~~  237 (266)
                      ++++   +++.+.+.+.+ -...-+.. .+-.|+    +-|.+... +...+++.+++.+. .|.+.|.   +.-.+|++
T Consensus       375 ~iR~h~~La~~fe~lv~~-d~~FE~~~-~~~lgL----vcFRlk~~-N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~  447 (511)
T KOG0628|consen  375 YIREHVRLAKEFETLVRA-DPRFEIVN-KRILGL----VCFRLKGD-NEINEALLNRLNSSGRIHLVPASLHGKFVLRFA  447 (511)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCcceeec-ccccce----eEEeecCC-cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEE
Confidence            7665   44444444444 11111111 222343    55555543 34567888888755 6666654   55679998


Q ss_pred             cc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .. ..++++|++++.+.|.+..+++
T Consensus       448 V~s~~t~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  448 VCSPLTNESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             ecCCCCcHHHHHHHHHHHHHHHHHH
Confidence            75 4567888999999999887774

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.30  E-value=6.4e-07  Score=75.96  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             CCCceeecCC---CHHHHHHHHhcCCCEEEEEEcc--ccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC------
Q psy6547          17 MPGYNIIPYN---DVDALEAKLKSNPNICAFMVEP--IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG------   85 (266)
Q Consensus        17 ~~~v~~~~~~---d~~~l~~~l~~~~~~~~i~~~~--~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~------   85 (266)
                      +..++.|-..   .+++.+++|  ++++++++-..  ++...|.  -..-.++++.+++++|++++++|-.-..      
T Consensus       112 Ga~lvEVGttN~t~~~Dye~AI--~e~Ta~ll~Vh~Sn~~i~GF--t~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~  187 (367)
T PF03841_consen  112 GARLVEVGTTNRTHLSDYEKAI--TENTAALLKVHTSNFRIQGF--TGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSP  187 (367)
T ss_dssp             -----------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHT
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccccc--cccccHHHHHHHHhhcCCcEEEECCCCCCcCccc
Confidence            3444444432   377888888  66788887333  3322222  1223899999999999999999966622      


Q ss_pred             cCCcCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ++-.+++-........+|+++||  |-++|.  ..|.+++.+++++.++.......+-..-+.+++..++|+.+..
T Consensus       188 ~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  188 YGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             T----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---
T ss_pred             ccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHH
Confidence            12122222333345679999988  788765  5799999999999887655566667778889999999987654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.18  E-value=0.00037  Score=62.69  Aligned_cols=216  Identities=14%  Similarity=0.106  Sum_probs=115.9

Q ss_pred             CHHHHHHHHhcCCCE-E-EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cCCcCcccccccCCCCcC
Q psy6547          27 DVDALEAKLKSNPNI-C-AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD  103 (266)
Q Consensus        27 d~~~l~~~l~~~~~~-~-~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~~~g~~~~~~~~~~~~d  103 (266)
                      +.+.+++.+.+++.. + +++.+|.+  .|...    .+++|.+.++++++++.+||+|.. ++..+.... .......+
T Consensus       152 ~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~----n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~-~~~~~~~~  224 (557)
T COG1982         152 PLETFKEALLAHPDAEKLAVITNPTY--DGVCY----NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE-SALNGGAD  224 (557)
T ss_pred             CHHHHHHHHHhChhhheeEEEecCcc--ceEee----cHHHHHHHHhhcCceEEhhhcCcccccccccCcc-hhhhcCce
Confidence            688999988776643 4 44455555  67777    899999999999999999999943 333333222 22223455


Q ss_pred             eee--ecccccCCchhhhhheecH-------HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc--cH----HHHHHH
Q psy6547         104 IVI--LGKALSGGLYPISAVLADD-------EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE--NM----IENAYK  168 (266)
Q Consensus       104 ~~~--~sK~~~~g~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~----~~~~~~  168 (266)
                      +++  ..|.+++. -..+.+..+.       ++.+.+.   ..++-+++...+++...|=......  .+    .....+
T Consensus       225 ~~tqS~HK~l~al-SQaS~iHv~~~~~~~~~r~nea~~---~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~  300 (557)
T COG1982         225 FVTQSTHKLLAAL-SQASMIHVKDGRAVNHERFNEALM---MHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAID  300 (557)
T ss_pred             EEEechhhhhhhh-hhhHHHhhCCCccCCHHHHHHHHH---HHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            665  55777764 4444554442       2222222   3333345555555554432222222  23    344455


Q ss_pred             HHHHHHHHhhccccc-CCCcccE----Ee----------cCccce-eeEEEEeeCccchHHHHHHHHHHCCceeccCCCC
Q psy6547         169 MGEIFRSELSSPANK-SKASFKL----SS----------GGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKPISNN  232 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~-~~~~~~~----~~----------~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  232 (266)
                      .++.+++...+ +++ ..+....    .+          .-.-=| =+.+..+ ..|..+..+.+.|+++|++..-.+..
T Consensus       301 ~r~~~~~~~~~-~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp-~~Gipg~~v~~~L~e~gii~e~~~d~  378 (557)
T COG1982         301 FRKALRRLINE-IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTP-EFGIPGAIVAKYLREHGIIPEETGDY  378 (557)
T ss_pred             HHHHHHHHHHh-cCCeeeccccccCCcccccccccccccceeccccEEEEecC-CCCCcHHHHHHHHHHcCCeeeecCCc
Confidence            66666666665 442 1111100    00          000000 1223332 22678899999999999998866444


Q ss_pred             EEEE--eccCCCCHHHHHHHHHHHH
Q psy6547         233 IIRL--SPALNITEQELREGLDIII  255 (266)
Q Consensus       233 ~iR~--~~~~~~t~~~i~~~~~~l~  255 (266)
                      .+-+  ++.......+++.+++..+
T Consensus       379 ~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         379 SNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             eeeEEeeeccchHHHHHHHHHHHHH
Confidence            3333  3222344445555555444

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=98.11  E-value=3.2e-06  Score=71.00  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-   85 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-   85 (266)
                      .+.+++.++-     .|+++|++.++..    +++++|+++.+++..|..+++.+.+++|.++|++||+++++|-+--. 
T Consensus        91 ~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~  170 (290)
T PF01212_consen   91 SGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLAN  170 (290)
T ss_dssp             TTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHH
T ss_pred             cCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHH
Confidence            3455556653     3699999999762    36899999998887666669999999999999999999999987621 


Q ss_pred             -cCCcCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhc
Q psy6547          86 -LGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGT  130 (266)
Q Consensus        86 -~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~  130 (266)
                       ....+..  ....-...|.++  ++|.++.   +. +.+++++++++.
T Consensus       171 a~~~~~~~--~~e~~~~~D~v~~~~tK~~g~---~~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  171 AAAALGVS--LAEIAAGADSVSFGGTKNGGA---PGGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHCHHHHH--HHHHHTTSSEEEEETTSTT-S---SSEEEEEESHHHHHH
T ss_pred             hhhccccc--HHHHhhhCCEEEEEEEccccc---ccceEEEechHHHHH
Confidence             1111221  111112355555  6676653   34 456678885544

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.07  E-value=0.00033  Score=66.87  Aligned_cols=202  Identities=13%  Similarity=0.102  Sum_probs=122.6

Q ss_pred             HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCeee-
Q psy6547          29 DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI-  106 (266)
Q Consensus        29 ~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~~-  106 (266)
                      ++++..+  +.++.++++..++ ..|.+.    ++++|.+++|++|.++|+- +- ..++   -.-+-..  ...||++ 
T Consensus       199 ~~~~~~~--~~~~~~v~vq~P~-~~G~i~----d~~~i~~~~h~~gal~~~~-~d~laL~---ll~~Pge--~GADI~vG  265 (954)
T PRK12566        199 DAVDNLA--AHAVFGALLQYPD-THGEIR----DLRPLIDQLHGQQALACVA-ADLLSLL---VLTPPGE--LGADVVLG  265 (954)
T ss_pred             cchhhcC--CCCEEEEEEECCC-CceEEc----cHHHHHHHHHHcCCEEEEE-eCHHHHh---CCCChhh--cCCcEEee
Confidence            4445555  3368888775433 356663    8999999999999886622 22 1111   1111112  3467765 


Q ss_pred             ----eccccc-CCchhhhhheecHHhhhccCCCC----------------------------CCCCCCCcHHHHHHHHHH
Q psy6547         107 ----LGKALS-GGLYPISAVLADDEVMGTLVPGT----------------------------HGSTYGGNPLACKLAMTA  153 (266)
Q Consensus       107 ----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~a~~~~  153 (266)
                          |+=.++ || --.|++.+++++.+.+....                            ..++.+.+...++...+.
T Consensus       266 ~~Q~fGvp~~~GG-P~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~  344 (954)
T PRK12566        266 STQRFGVPMGYGG-PHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF  344 (954)
T ss_pred             CCCcCCCCCCCCC-CCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence                333444 55 55788988888887775431                            112223333322222221


Q ss_pred             H-HHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         154 L-DVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       154 l-~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      . -.++.++   +-+++..++.++.+.|.+ .+.....     ...   |=.|.+.-  +.++.++.++.+++|+.++-.
T Consensus       345 Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~-----~~f---F~~~~v~~--~~~~~~~~~~a~~~~~n~r~~  413 (954)
T PRK12566        345 YAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLN-----RHF---FDTLTLEV--GGAQAAIIESAEAARINLRIL  413 (954)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCcccc-----CCc---cceEEEEc--cCCHHHHHHHHHHCCCeeEEe
Confidence            1 2234444   355677788888999888 5532211     122   33333332  214778999999999999988


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      +.+.+.+|+.-..|++|++.+++.+.
T Consensus       414 ~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        414 GRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence            78899999999999999999999884

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.07  E-value=0.00012  Score=63.87  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=90.2

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcC---CCEE-EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSN---PNIC-AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~---~~~~-~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +-+++.||-+     |+++|++.|++.   ..+- +|+.+-....+|.+    +++++|+++|+++++++.+|.+|.|..
T Consensus       162 Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~----D~l~~i~~i~~~~~~wlHVDaA~gg~~  237 (373)
T PF00282_consen  162 GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI----DPLEEIADICEKYNIWLHVDAAYGGSA  237 (373)
T ss_dssp             TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-----SHHHHHHHHHHCT-EEEEEETTGGGG
T ss_pred             eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc----cCHHHHhhhccccceeeeecccccccc
Confidence            3346666643     689999988652   2233 44444445556666    699999999999999999999997732


Q ss_pred             CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-hh-hccC---CCCC-------------CCCCCCcH-H
Q psy6547          88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-VM-GTLV---PGTH-------------GSTYGGNP-L  145 (266)
Q Consensus        88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~-~~~~---~~~~-------------~~~~~~~~-~  145 (266)
                      .....+.....++ ..|=++  ..|+++.. ++.|+++.+.+ .+ +.+.   .+..             ..+...+. .
T Consensus       238 ~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~  316 (373)
T PF00282_consen  238 LLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRF  316 (373)
T ss_dssp             GGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHH
T ss_pred             cccccccccccccccccccccchhhhhcCC-ccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccc
Confidence            1111111111222 233333  77999977 78888877553 22 2221   1111             01223343 3


Q ss_pred             HHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHhhc
Q psy6547         146 ACKLAMTALDVILEEN---MIENAYKMGEIFRSELSS  179 (266)
Q Consensus       146 ~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~  179 (266)
                      ....+..+++.++.++   ..++..++++++.++|++
T Consensus       317 ~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~  353 (373)
T PF00282_consen  317 RALKLWATLKSLGREGYRERIRRCIELARYLADRLRK  353 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455667777777665   455566788888888888

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG2467|consensus

Probab=98.03  E-value=0.00016  Score=60.93  Aligned_cols=209  Identities=19%  Similarity=0.188  Sum_probs=121.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCc-ccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~-~~~~~~~~~~~d~  104 (266)
                      |.|.||+....- ++++|++-...-      .-.=+..+++++|.+.|.++++|-+| +|+---|. +.+++.    .|+
T Consensus       177 DYD~Le~~A~~f-rPk~iiaG~SaY------~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~Di  245 (477)
T KOG2467|consen  177 DYDKLEKTATLF-RPKLIIAGTSAY------SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDI  245 (477)
T ss_pred             ehHHHHHHHHhc-CCcEEEeccccc------hhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cce
Confidence            566666655222 567777653221      11127899999999999999999999 55422221 112221    344


Q ss_pred             ee--ecccccCCchhhhhheecHHhhhccC--------------------CCCCCCCCCCcHHHHHHHHHHHHHHhhc--
Q psy6547         105 VI--LGKALSGGLYPISAVLADDEVMGTLV--------------------PGTHGSTYGGNPLACKLAMTALDVILEE--  160 (266)
Q Consensus       105 ~~--~sK~~~~g~~~~g~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~~~l~~~~~~--  160 (266)
                      ++  -.|++-|.  |.|.+..++-+. ...                    +..++.   ++--..++...+|+...+.  
T Consensus       246 VTTTTHKsLRGP--Rg~mIFyRkGvk-~~~~k~g~~i~ydlE~kINfaVFP~lQGG---PHNhtIaalAvALkQa~tpef  319 (477)
T KOG2467|consen  246 VTTTTHKSLRGP--RGAMIFYRKGVK-SIKPKQGKEILYDLEDKINFAVFPGLQGG---PHNHTIAALAVALKQAMTPEF  319 (477)
T ss_pred             eeccccccccCC--cceeEEEeccCC-cCCCCCCCcceechhhhhhhhccccccCC---CCcchHHHHHHHHHhhCCHHH
Confidence            44  77888764  667666554321 111                    001111   2222445555666665553  


Q ss_pred             -cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHH---HCCceec---cCCC
Q psy6547         161 -NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMK---DAGLVTK---PISN  231 (266)
Q Consensus       161 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~---~~gi~~~---~~~~  231 (266)
                       .+++++.++.+.+.+.|.+ .+...+.     .|.+..++.+++....  +...+.+++.+-   .++-+..   ...+
T Consensus       320 k~Yq~qV~~Nakala~~l~~-~Gy~lvt-----gGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~P  393 (477)
T KOG2467|consen  320 KEYQKQVLKNAKALASALIS-RGYKLVT-----GGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSP  393 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCceEec-----CCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCC
Confidence             5788899999999999988 6654443     3555557878876531  333444544432   1222111   1246


Q ss_pred             CEEEEeccC----CCCHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPAL----NITEQELREGLDIIINTI  258 (266)
Q Consensus       232 ~~iR~~~~~----~~t~~~i~~~~~~l~~~~  258 (266)
                      +.+|+..+.    .+.++|+++..+-|.+++
T Consensus       394 gGiRiGtPAmTsRG~~e~df~~v~~fi~~av  424 (477)
T KOG2467|consen  394 GGIRIGTPAMTSRGFGEEDFEKVADFIDRAV  424 (477)
T ss_pred             CceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence            889998764    445778877777777664

>KOG1412|consensus

Probab=97.95  E-value=0.00036  Score=57.73  Aligned_cols=214  Identities=13%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccC-------
Q psy6547          27 DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-------   98 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~-------   98 (266)
                      |++-+-..|+..|.-..+++-. .+|++|+- ++++-+.+|+++.++.+..-++|-+|-||+ .|.+ .-+.|       
T Consensus       164 d~e~~Lsdl~~APe~si~iLhaCAhNPTGmD-PT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~-~~DawAiR~fV~  240 (410)
T KOG1412|consen  164 DLEGFLSDLESAPEGSIIILHACAHNPTGMD-PTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDL-DADAWAIRYFVE  240 (410)
T ss_pred             cHHHHHHHHhhCCCCcEEeeeccccCCCCCC-CCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCc-cccHHHHHHHHh
Confidence            4666666665555434444433 48888977 899999999999999999999999998884 3321 11221       


Q ss_pred             -CCCcCeee--eccccc-CCchhhhhhe--e-cHHhhhccCCC---CCCCCC-CCcHHHHHHHHHHHHHHh-------h-
Q psy6547          99 -DVRPDIVI--LGKALS-GGLYPISAVL--A-DDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVIL-------E-  159 (266)
Q Consensus        99 -~~~~d~~~--~sK~~~-~g~~~~g~~~--~-~~~~~~~~~~~---~~~~~~-~~~~~~~~a~~~~l~~~~-------~-  159 (266)
                       | ..-+++  |+|-+| -+ -|+|.+.  . ++.........   -...++ .+...++..+...|.--+       + 
T Consensus       241 ~g-~e~fv~QSFaKNfGlYn-eRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~si  318 (410)
T KOG1412|consen  241 QG-FELFVCQSFAKNFGLYN-ERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSI  318 (410)
T ss_pred             cC-CeEEEEhhhhhhccccc-ccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHH
Confidence             2 122333  999998 55 6888643  2 22332222211   011122 222223333333332111       0 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCCCCEEEEe
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLS  237 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~iR~~  237 (266)
                      ..+-.++++.+..|++.|.. ++.++ +..-....|+    |.+.-     ..+. -++.|. .+.|++.+.  +.|-+|
T Consensus       319 k~MssRI~~MR~aLrd~L~a-L~TPGtWDHI~~QiGM----FSyTG-----Ltp~-qV~~li~~h~vyLl~~--GRInis  385 (410)
T KOG1412|consen  319 KTMSSRIKKMRTALRDHLVA-LKTPGTWDHITQQIGM----FSYTG-----LTPA-QVDHLIENHKVYLLSD--GRINIS  385 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHhhccc----eeecC-----CCHH-HHHHHHHhceEEEecC--CcEeee
Confidence            12556777888888888888 66432 2221223343    44432     3333 355555 567877763  545555


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                         ......++...++|.++....
T Consensus       386 ---GLN~~NveyVAkAIde~Vr~~  406 (410)
T KOG1412|consen  386 ---GLNMKNVEYVAKAIDETVRAI  406 (410)
T ss_pred             ---ccccccHHHHHHHHHHHHHhh
Confidence               445668899999999887664

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.94  E-value=0.00078  Score=57.03  Aligned_cols=149  Identities=13%  Similarity=0.065  Sum_probs=100.0

Q ss_pred             Ceeee--cccccCCchhhhhheecHHhhhccCCC------------CCCCCC-CCcHHHHHHHHHHHHHHhhc----cHH
Q psy6547         103 DIVIL--GKALSGGLYPISAVLADDEVMGTLVPG------------THGSTY-GGNPLACKLAMTALDVILEE----NMI  163 (266)
Q Consensus       103 d~~~~--sK~~~~g~~~~g~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~a~~~~l~~~~~~----~~~  163 (266)
                      |++.+  -|.+|+-  .++.++.++++++.++..            ...++| +++.++.....-+++++...    .+.
T Consensus       192 dviyagaQKnlGpa--GltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~  269 (365)
T COG1932         192 DVIYAGAQKNLGPA--GLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALE  269 (365)
T ss_pred             ceEEEehhhccCcc--ceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44444  4888842  277788899998887653            223444 44455566666778888763    467


Q ss_pred             HHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--CCCEEEEecc
Q psy6547         164 ENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPA  239 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~  239 (266)
                      ++.++..+.|.+-+++ -++  +.+....++ -+   -+.|.+.+  ..-.+.|.++++++|+..--+  ..+.+|.++.
T Consensus       270 ~rn~~ka~~LY~~id~-s~fy~~~v~~~~RS-~m---nV~f~~~~--~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiy  342 (365)
T COG1932         270 ARNQAKAQLLYDWIDK-SDFYRNLVAKANRS-RM---NVTFTLVD--AELDKGFVAEAEAAGLIYLKGHRSVGGLRASIY  342 (365)
T ss_pred             HHHHHHHHHHHHHHHh-CCccccccchhhcc-ce---eEEEEcCc--HHHHHHHHHHHHHcCCceeccccCCCceeeeee
Confidence            7777778888887776 343  222221222 22   35566555  334578999999998877644  3455999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      -.++.++++.+++-++++.++
T Consensus       343 nA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         343 NAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999888765

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.90  E-value=0.0014  Score=55.44  Aligned_cols=222  Identities=13%  Similarity=0.136  Sum_probs=128.5

Q ss_pred             CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCcCcccccccCCC
Q psy6547          27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGKLLAIHYEDV  100 (266)
Q Consensus        27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~g~~~~~~~~~~  100 (266)
                      |++.|+++|++-.  ++..|++.-.+|..|.-+.|-+.+++++++|++|++++++|.+...    |...-.. ....|.+
T Consensus       170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~-gYrd~sI  248 (471)
T COG3033         170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREP-GYRDWSI  248 (471)
T ss_pred             CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCc-ccccccH
Confidence            8999999997732  5777776666666666678999999999999999999999977621    2111110 0111111


Q ss_pred             ---------CcCeeeec-c--cccCCchhh-hhheecHH----hhhccCCC----CCCCCCCC-cHHHHHHHHHHHHHHh
Q psy6547         101 ---------RPDIVILG-K--ALSGGLYPI-SAVLADDE----VMGTLVPG----THGSTYGG-NPLACKLAMTALDVIL  158 (266)
Q Consensus       101 ---------~~d~~~~s-K--~~~~g~~~~-g~~~~~~~----~~~~~~~~----~~~~~~~~-~~~~~~a~~~~l~~~~  158 (266)
                               -.|-.++| |  ++.    .+ |+++.+.+    +.+.++..    .-..+|++ +.=.+.+....|...-
T Consensus       249 ~~IarEm~sYaD~~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~  324 (471)
T COG3033         249 EEIAREMYSYADGCTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGV  324 (471)
T ss_pred             HHHHHHHHhhhhhheeecccccee----ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhc
Confidence                     12444444 3  333    23 23555444    33333321    12223322 1112334444455444


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceecc---
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTKP---  228 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~~---  228 (266)
                      ..++.++..+..++|.+.|.+ .+-+.+   .+..|+   -+.++...      .+.+.++.|+-+|- +.||-..-   
T Consensus       325 ~~~yl~~Rv~Qv~YL~~~l~~-~GVpi~---~paGGH---avfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~  397 (471)
T COG3033         325 NFDYLAHRVAQVQYLADGLEE-AGVPIV---QPAGGH---AVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGS  397 (471)
T ss_pred             CcHHHHHHHHHHHHHHHHHHh-cCCeeE---ecCCCc---eEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeec
Confidence            466888888888999999988 554322   233344   34444321      11345677776664 55764421   


Q ss_pred             ----C----------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547         229 ----I----------SNNIIRLSPA-LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       229 ----~----------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          .          ..+.+|+..+ ..-|.+.+|..++.+.+..+.
T Consensus       398 ~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         398 FSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             eecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence                1          1267999876 455778899999988877654

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=97.79  E-value=0.0053  Score=56.74  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             CceeecCC-----CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHH---HhcCC--EEEEecccc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC---SQYNV--LFIADEVQT   84 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~---~~~g~--~li~De~~~   84 (266)
                      .|+.||-+     |+++|++.|++    ...+-+|+.+-.....|.+    +++++|.++|   +++|+  ++.+|.+|.
T Consensus       248 ~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai----Dpl~eI~~l~~~~~~~gl~~~lHVDAAyG  323 (608)
T TIGR03811       248 QVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV----DGIDKIVALRNKLMKEGIYFYLHVDAAYG  323 (608)
T ss_pred             cEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc----CCHHHHHHHHHHHHHcCCceeEeeecccc
Confidence            46777743     79999998864    2234555555455556666    5999999998   77898  699999998


Q ss_pred             CcCC---cC---ccccc--------------------------ccCCC-CcCeee--ecccccCCchhhhhheecH-Hhh
Q psy6547          85 GLGR---TG---KLLAI--------------------------HYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVM  128 (266)
Q Consensus        85 ~~~~---~g---~~~~~--------------------------~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~  128 (266)
                      |+.+   ..   .+..+                          ...++ ..|-++  ..|.+.-. ++.|+++.+. ++.
T Consensus       324 G~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~  402 (608)
T TIGR03811       324 GYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMR  402 (608)
T ss_pred             chhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHH
Confidence            8631   00   00000                          00122 233333  77988866 7788777754 332


Q ss_pred             hccC---CCC--C---------CCCCCCcHHH--HHHHHHHHHHH--hh---ccHHHHHHHHHHHHHHHhhc
Q psy6547         129 GTLV---PGT--H---------GSTYGGNPLA--CKLAMTALDVI--LE---ENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       129 ~~~~---~~~--~---------~~~~~~~~~~--~~a~~~~l~~~--~~---~~~~~~~~~~~~~l~~~l~~  179 (266)
                      +.+.   .+.  .         ..+..++..+  +++...+++.+  ..   .++..+..++++++.+.|++
T Consensus       403 ~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~  474 (608)
T TIGR03811       403 DVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN  474 (608)
T ss_pred             HHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3221   111  0         0122344433  55666777776  33   34677778889999998887

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG0629|consensus

Probab=97.50  E-value=0.0051  Score=53.20  Aligned_cols=230  Identities=16%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             CCceeecCC-----CHHHHHHHHhcCCCE--EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-c--C
Q psy6547          18 PGYNIIPYN-----DVDALEAKLKSNPNI--CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L--G   87 (266)
Q Consensus        18 ~~v~~~~~~-----d~~~l~~~l~~~~~~--~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~--~   87 (266)
                      ..++.|+-+     .+++||+.|.+....  --++++-..++  ++.---++++.|+++|.+|++++.+|.+..| +  .
T Consensus       222 d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGT--TV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS  299 (510)
T KOG0629|consen  222 DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGT--TVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMS  299 (510)
T ss_pred             ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCc--eeeeccCcHHHHHHHHHhcCEEEEeecccccccccC
Confidence            445555544     589999998653211  12333333222  2223346999999999999999999999965 2  1


Q ss_pred             CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecH-HhhhccCCCC----------CCCCC-CCcHHHHH----
Q psy6547          88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMGTLVPGT----------HGSTY-GGNPLACK----  148 (266)
Q Consensus        88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~----------~~~~~-~~~~~~~~----  148 (266)
                      +...   ....|+ ..+-++  -.|.++.+ ++=+..+.+. .+++......          .-.++ ++.-..+-    
T Consensus       300 ~k~R---~kl~Giera~SvtwnpHK~~gap-lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~  375 (510)
T KOG0629|consen  300 RKHR---HKLTGIERANSVTWNPHKLMGAP-LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV  375 (510)
T ss_pred             hhhH---hhccCccccCceeecHHHhhcCc-chhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence            1111   122233 223233  56888877 5655555443 3344433210          00111 11111110    


Q ss_pred             -HHHHHHHHH--hhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCcccee-eEEEEeeCc------------
Q psy6547         149 -LAMTALDVI--LEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSI-NTLILSVSA------------  208 (266)
Q Consensus       149 -a~~~~l~~~--~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~-~~~~~~~~~------------  208 (266)
                       ...-.|-+-  +.+   ....++.++++++.+++++ .+. ..+-...+..-+   + +|+..+.-.            
T Consensus       376 D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lre-r~~~~~l~~~~pe~~n---v~fw~vp~~lR~~~~~~e~~~rL  451 (510)
T KOG0629|consen  376 DVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLRE-REGFEMLFELEPEHVN---VCFWYVPPSLRGWQENPERDSRL  451 (510)
T ss_pred             cHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh-cccceehhcCCCceEE---EeeccCchHhccCcccchhhhHH
Confidence             011111111  112   3456677899999999998 443 222110011111   3 222221100            


Q ss_pred             cchHHHHHHHHHHCCceec---cC--CCCEEEEecc-CCCCHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDAGLVTK---PI--SNNIIRLSPA-LNITEQELREGLDIIINT  257 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~---~~--~~~~iR~~~~-~~~t~~~i~~~~~~l~~~  257 (266)
                      ...+..+-.++.++|-...   |.  -++++|+..+ .+.+++|+|-+++.|.+.
T Consensus       452 ~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  452 VKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL  506 (510)
T ss_pred             HhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence            0123445567777776543   32  3578887532 356899999999988765

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.11  E-value=0.0037  Score=53.20  Aligned_cols=188  Identities=17%  Similarity=0.211  Sum_probs=98.5

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~   88 (266)
                      ++.+...++-     .|.+.+++.++  ++++++++--.-+-.---.++.+.++++.+..++.  ++.+++|++|..|--
T Consensus       127 ~Gi~Y~~v~L~~dg~~D~~~i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE  204 (403)
T PF06838_consen  127 FGIKYREVPLTEDGTIDWEAIKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE  204 (403)
T ss_dssp             GT-EEEE--B-TTSSB-HHHHHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS
T ss_pred             hCceeEEEeecCCCCcCHHHHHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc
Confidence            3555666653     27999999994  67999998765333322336778899999888876  589999999977732


Q ss_pred             cCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccCCC--------CCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      .-++     ..+..|++.  +=|-.|||+-|. ||+++++++.+.....        ..+.++..+........-+    
T Consensus       205 ~~EP-----~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFlA----  275 (403)
T PF06838_consen  205 TQEP-----TEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFLA----  275 (403)
T ss_dssp             SS-G-----GGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHHH----
T ss_pred             ccCc-----cccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHHHHhHHhhc----
Confidence            2222     134566665  669999886665 5789999998876421        3445554444332222111    


Q ss_pred             hhccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         158 LEENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                        ........+-.......+++ ++.+..+. ..+..-.   +-.+.+.+  ......||+...+.
T Consensus       276 --P~vV~eAlKgaif~A~~fe~-lG~~v~P~~~~~R~Di---IQai~l~~--~e~l~~FC~~iQ~~  333 (403)
T PF06838_consen  276 --PHVVGEALKGAIFAAALFEK-LGFEVSPKPDDPRSDI---IQAIELGS--PEKLIAFCQGIQAA  333 (403)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-TT-EEES-TTS--SSS----EEEE-SS--HHHHHHHHHHHHHT
T ss_pred             --hHHHHHHHHHHHHHHHHHHH-cCCcCCCCCCCCCCce---EEEEECCC--HHHHHHHHHHHHhc
Confidence              11222222222222333444 54321111 0122344   66677776  45667788887765

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG1411|consensus

Probab=96.74  E-value=0.011  Score=49.87  Aligned_cols=229  Identities=17%  Similarity=0.179  Sum_probs=120.0

Q ss_pred             cccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ..|.-.+..+..++|-       |.+.+-+.+++.+.-..|++-. .+|++|.- ++.+-+++|.++.++.+.+-++|-+
T Consensus       161 ~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvD-Pt~eqw~ki~~~~~~k~~~pffDmA  239 (427)
T KOG1411|consen  161 NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVD-PTKEQWEKISDLIKEKNLLPFFDMA  239 (427)
T ss_pred             ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCC-ccHHHHHHHHHHhhhccccchhhhh
Confidence            3455555555555554       3344444444444323333333 58888865 8999999999999999999999999


Q ss_pred             ccCcCCcCcccccccCC------CCcCeee---eccccc-CCchhhhhh--ee-cHHhhhccCCC---CCCCCCCCcHH-
Q psy6547          83 QTGLGRTGKLLAIHYED------VRPDIVI---LGKALS-GGLYPISAV--LA-DDEVMGTLVPG---THGSTYGGNPL-  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~------~~~d~~~---~sK~~~-~g~~~~g~~--~~-~~~~~~~~~~~---~~~~~~~~~~~-  145 (266)
                      |-||. .|.. ..+.+.      ..-++..   ++|-+| -| -|+|.+  ++ +++.....+..   .....|+.+|+ 
T Consensus       240 YQGfa-SG~~-d~DA~avR~F~~~g~~~~laQSyAKNMGLYg-ERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~h  316 (427)
T KOG1411|consen  240 YQGFA-SGDL-DKDAQAVRLFVEDGHEILLAQSYAKNMGLYG-ERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLH  316 (427)
T ss_pred             hcccc-cCCc-hhhHHHHHHHHHcCCceEeehhhhhhcchhh-hccceeEEEecCHHHHHHHHHHHHHHhcccccCCCcc
Confidence            98883 2321 111111      1222322   889988 44 577764  33 33433333221   11222222222 


Q ss_pred             HHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547         146 ACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVC  216 (266)
Q Consensus       146 ~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  216 (266)
                      ++..+...|..-+        -..+..++...+..+.+.|.. .+... +..-....|+    |.|.     +.+++.+-
T Consensus       317 GArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~-~gs~~~W~hI~~QIGM----F~fT-----gl~peQv~  386 (427)
T KOG1411|consen  317 GARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEK-EGSPGNWSHITKQIGM----FCFT-----GLNPEQVD  386 (427)
T ss_pred             chhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhc-CCCCccHHHHHHhhhe----eeec-----CCCHHHHH
Confidence            2223332222111        123455666666666666665 33221 1110122343    3332     34455555


Q ss_pred             HHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       217 ~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ..-.+..|+++.-  +  |+|.. ..+...++.+.+.|-.+.
T Consensus       387 ~l~ke~~iYmT~d--G--RiS~a-G~ss~nV~yLa~aih~vt  423 (427)
T KOG1411|consen  387 WLTKEYHIYLTKD--G--RISMA-GLSSSNVPYLADAIHAVT  423 (427)
T ss_pred             HHHhhheeeeccC--c--eEeec-cccccCCcccchhhHhHh
Confidence            5556778888753  3  55644 345566677777766544

>KOG2040|consensus

Probab=96.56  E-value=0.15  Score=46.86  Aligned_cols=195  Identities=14%  Similarity=0.154  Sum_probs=115.2

Q ss_pred             CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee-----eccccc-
Q psy6547          39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-----LGKALS-  112 (266)
Q Consensus        39 ~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~-----~sK~~~-  112 (266)
                      +++..+++..+. ..|.+.    +..++.+.++..|..+++---.-.+.   ..-+-..+  ..|+.+     |+-.+| 
T Consensus       246 ~~v~gvlvQYP~-t~G~i~----d~~el~~~a~~~~s~vv~atDLLaLt---iLrpPgef--GaDIavGSsQRFGVPlGY  315 (1001)
T KOG2040|consen  246 KDVSGVLVQYPD-TEGSVL----DFDELVELAHANGSLVVMATDLLALT---ILRPPGEF--GADIAVGSSQRFGVPLGY  315 (1001)
T ss_pred             cceeEEEEEcCC-CCCccc----CHHHHHHHhhccCceEEEeehhhHHH---ccCChhhc--CceeeeccccccCccccC
Confidence            367777776444 356666    89999999999998877431111110   00011223  345555     555566 


Q ss_pred             CCchhhhhheecHHhhhccCCCCCCCCC------------------------CCcHHHHHHHHHHHHHH-----hh---c
Q psy6547         113 GGLYPISAVLADDEVMGTLVPGTHGSTY------------------------GGNPLACKLAMTALDVI-----LE---E  160 (266)
Q Consensus       113 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~a~~~~l~~~-----~~---~  160 (266)
                      || --.|+..+++++.+.+.....+.+-                        +.|--.+.|.++.+..+     ..   +
T Consensus       316 GG-PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~  394 (1001)
T KOG2040|consen  316 GG-PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLK  394 (1001)
T ss_pred             CC-chHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHH
Confidence            66 5677888887777666433111111                        11211222333333221     11   2


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      ++.+++...+..+...|+. .+...+-.     ..   |=.+.+.-  +.+.+++..+..+++|-++-...+.+-+++.-
T Consensus       395 ~IArrvh~~T~~l~~~l~~-aghel~~k-----~f---FDTLkI~~--~~s~~~~l~rA~~~~iNlr~~ed~tigvslDE  463 (1001)
T KOG2040|consen  395 EIARRVHNLTLILAEGLKN-AGHELQHK-----PF---FDTLKIRC--GCSAEEVLDRAAKRQINLRLVEDGTIGVSLDE  463 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHhh-cchhhccc-----cc---cceEEEEe--cCcHHHHHHHHHhhcCceEEeecCceEEeecc
Confidence            3556666777777777776 44322211     12   32233222  33789999999999999998888899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIII  255 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~  255 (266)
                      ..+++|++.++..+.
T Consensus       464 Tv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  464 TVTEKDVDDLLWVFN  478 (1001)
T ss_pred             cccHHHHHHHHHHHc
Confidence            999999999998875

>KOG3843|consensus

Probab=96.15  E-value=0.0093  Score=48.52  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=38.0

Q ss_pred             CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      |++++++.+++-. +.-+.+.. ..++-  .+-+++.+++|..+|..|+++-++.++|
T Consensus       142 dleav~~~iee~g~dcilci~s-ttscf--apr~pd~leaiaaica~~diphivnnay  196 (432)
T KOG3843|consen  142 DLEAVEAIIEELGEDCILCIHS-TTSCF--APRSPDNLEAIAAICAAHDIPHIVNNAY  196 (432)
T ss_pred             hHHHHHHHHHHhCCceEEEEee-ccccc--CCCCCchHHHHHHHHHccCchhhhcccc
Confidence            6888899887643 43333322 22221  1235789999999999999999999999

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=94.51  E-value=0.8  Score=38.37  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCc
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~   86 (266)
                      ..++-+...+|-.     |.+.++..+  .+++++|.+.-..+-.---.++.+.++++.++.++-  ++.+.+|++|..|
T Consensus       136 ~dfgi~Y~~v~Lt~~gkiD~~~v~~~i--~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEF  213 (416)
T COG4100         136 KDFGIKYKAVPLTADGKIDIQAVKTAI--SDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEF  213 (416)
T ss_pred             HHhCcceeecccccCCcccHHHHHHhc--CccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhh
Confidence            3345555555533     788999999  568899987654322111114567888888888875  4888899999766


Q ss_pred             CCcCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccC
Q psy6547          87 GRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLV  132 (266)
Q Consensus        87 ~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~  132 (266)
                      --.-     +...+..|++.  +=|-.|||+... |++.+.+++.+...
T Consensus       214 vE~~-----EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         214 VEEK-----EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             hhcc-----CccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence            2111     11234555554  668888885444 57888888887654

>KOG2790|consensus

Probab=93.12  E-value=1.3  Score=36.87  Aligned_cols=109  Identities=11%  Similarity=-0.008  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547         147 CKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK  220 (266)
Q Consensus       147 ~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (266)
                      .-+..-.++++.+.    .+.+...+..+.+.+.+++.-+.  ..+....++ -+   -+.|.+.+  ..-..+|.++..
T Consensus       253 iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS-~M---NV~Fri~~--d~Le~eFLkeA~  326 (370)
T KOG2790|consen  253 IYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRS-RM---NVPFRIEK--DELEAEFLKEAA  326 (370)
T ss_pred             eeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhh-hc---ccceeecc--hHHHHHHHHHHH
Confidence            33334455666553    24455566777888888872222  111111222 22   24455554  223466777777


Q ss_pred             HCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++.+-.-+  +.+.+|-|+.-+.+.++.+++++-++++.+.+
T Consensus       327 ~~~mv~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~h  369 (370)
T KOG2790|consen  327 KEHMVQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKKH  369 (370)
T ss_pred             HhhhhccccccccccchhhhhccccHHHHHHHHHHHHHHHHhc
Confidence            777665433  46889999999999999999998888877653

>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins

Probab=83.35  E-value=1.6  Score=30.88  Aligned_cols=48  Identities=15%  Similarity=0.313  Sum_probs=35.0

Q ss_pred             chHHHHHHHHHHCCceeccC---------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .|+..+.+.|.++|+.++-.         ++.++.+.    .+++++++.++.|++.+++.
T Consensus        11 ~Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliG----vede~v~~vl~iIk~~c~~R   67 (109)
T PF06153_consen   11 EDADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIG----VEDEKVDEVLEIIKENCKKR   67 (109)
T ss_dssp             HHHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEE----EEGGGHHHHHHHHHHHH--E
T ss_pred             hhHHHHHHHHHHCCceEEEEecccceeccCCEEEEEE----ecHHHHHHHHHHHHHhhcCc
Confidence            48999999999999988731         33455555    78899999999999987753

; PDB: 3M05_A.

>smart00642 Aamy Alpha-amylase domain

Probab=81.31  E-value=7.7  Score=29.72  Aligned_cols=60  Identities=17%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             CHHHHHHHHhc--CCCEEEEEEccccCCCCc-----------------ccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          27 DVDALEAKLKS--NPNICAFMVEPIQGEAGA-----------------VVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~-----------------~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      |++.+.+.|..  .-.+.+|.+.|++.....                 ..-+.+.++++++-||++|+-||+|=+..+.
T Consensus        17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~   95 (166)
T smart00642       17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT   95 (166)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            56666655422  226889999987443320                 1235578999999999999999999888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		2e-80
1oat_A	439	Ornithine Aminotransferase Length = 439		2e-80
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		5e-80
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		2e-79
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		3e-67
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		2e-66
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		6e-52
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		1e-34
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		6e-34
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		2e-33
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		4e-33
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		9e-33
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		6e-29
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		2e-28
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		2e-28
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		3e-28
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		5e-28
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		7e-28
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		1e-27
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		3e-27
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-26
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		7e-26
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		5e-25
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		6e-25
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		1e-22
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		4e-22
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		8e-22
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		1e-21
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		1e-21
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		2e-21
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		3e-21
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		3e-21
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		4e-20
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		5e-20
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		5e-20
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		6e-20
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		1e-19
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		2e-19
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		2e-19
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-19
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		3e-19
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		4e-19
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		4e-19
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		8e-19
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		8e-19
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		1e-18
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		2e-18
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		2e-18
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		4e-17
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		4e-17
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		4e-17
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		4e-17
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		6e-17
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		8e-17
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-16
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		2e-16
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-16
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		2e-16
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		3e-16
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		4e-16
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		9e-16
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		2e-15
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		2e-15
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		2e-15
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		3e-15
3fq8_A	427	M248i Mutant Of Gsam Length = 427		3e-15
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		1e-14
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		1e-13
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		1e-12
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		3e-12
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		1e-11
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		4e-10
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		2e-09
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		2e-09
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		1e-08
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		9e-08
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		1e-07

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                           +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
            E ELRE ++II  TI
Sbjct: 421 KEDELRESIEIINKTI 436

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                           +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
            E ELRE ++II  TI
Sbjct: 421 KEDELRESIEIINKTI 436

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  293 bits (751), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 151 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 209
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 210 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 269
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct: 270 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 329
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                           +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 330 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 383
Query: 243 TEQELREGLDIIINTI 258
            E ELRE ++II  TI
Sbjct: 384 KEDELRESIEIINKTI 399

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/256 (55%), Positives = 188/256 (73%), Gaps = 8/256 (3%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
           DD++M T+ PG H STYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   P++
Sbjct: 307 DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                           +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
            E ELRE ++II  TI
Sbjct: 421 KEDELRESIEIINKTI 436

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  251 bits (641), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 171/255 (67%), Gaps = 5/255 (1%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TD    N FGP +P +  +PY+D++ALE +L+ +PN+CAF+VEP+QGEAG +VP D Y 
Sbjct: 158 STDKKCKNNFGPFVPNFLKVPYDDLEALEKELQ-DPNVCAFIVEPVQGEAGVIVPSDSYF 216
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             V +LC +YNVLF+ADEVQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA
Sbjct: 217 PGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILA 276
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
           +D+VM  L PG HGSTYGGNPLA  + + AL V++ E + ENA K+G  F   L      
Sbjct: 277 NDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKD 336
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
                          I       + ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT
Sbjct: 337 SKVVREVRGKGLLCAIEF----KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCIT 392
Query: 244 EQELREGLDIIINTI 258
           +++L E  +II+ T+
Sbjct: 393 KEQLDECTEIIVKTV 407

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 174/255 (68%), Gaps = 5/255 (1%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +T     + FGP  P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL
Sbjct: 177 STTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYL 235
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           + V  +C +YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA
Sbjct: 236 QGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLA 295
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
           +D++M  + PG HGSTYGGNPLA  + + AL+V++ E + ENA K+G  F   L      
Sbjct: 296 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 355
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
                          I       + ++ V D+C+K+K+ GL+T+ + +  IRL+P L IT
Sbjct: 356 SKIVRDVRGKGLLCAIEF----KNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCIT 411
Query: 244 EQELREGLDIIINTI 258
           +++L E  +II+ T+
Sbjct: 412 KEQLDECTEIIVKTV 426

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 149/242 (61%), Gaps = 11/242 (4%)
Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FGP +PG  +IPY D++AL+A +   PN  AF++EPIQGEAG  +P  G+LK+   +C +
Sbjct: 157 FGPMLPGIIVIPYGDLEALKAAI--TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK 214
Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
            NVLF+ADE+QTGLGRTGK+ A  +++V PD+ ILG AL GG++PIS   A+ +++G   
Sbjct: 215 ENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFE 274
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXX 192
           PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE    +L    N          
Sbjct: 275 PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRG-- 332
Query: 193 XXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
                    L + +         C ++K AGL+ K    N+IR++P L I+E++L     
Sbjct: 333 -------KGLFIGIELNEPARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQ 385
Query: 253 II 254
            I
Sbjct: 386 KI 387

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 18/253 (7%)
Query: 6   DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK 65
            P    +F P         YND+++  A +  + + CA +VEPIQGE G V   + +L+ 
Sbjct: 151 QPAYSQDFAPLPADIRHAAYNDINSASALI--DDSTCAVIVEPIQGEGGVVPASNAFLQG 208
Query: 66  VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
           +R LC+++N L I DEVQTG+GRTG+L A  +  V PD++   KAL GG +P+ A+LA +
Sbjct: 209 LRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATE 267
Query: 126 EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXX 185
           E    +  GTHG+TYGGNPLA  +A   L++I    M+    +  + F   L++      
Sbjct: 268 ECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT------ 321
Query: 186 XXXXXXXXXXXXXINTLILSVSAIL------EVYDVCIKMKDAGLVTKPISNNIIRLSPA 239
                        +  L L +  +L      +   +  +   AG++      N++R +PA
Sbjct: 322 ---INHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPA 378
Query: 240 LNITEQELREGLD 252
           LN++E+E+  GLD
Sbjct: 379 LNVSEEEVTTGLD 391

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 131/251 (52%), Gaps = 17/251 (6%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           T  P  +  F P +PG++    ND+D++   L  +      ++E IQGE G     + +L
Sbjct: 138 TGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL--DEETAGIIIEVIQGEGGVNEASEDFL 195
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
            K++ +C + +VL I DEVQTG+GRTG+  A  + +++PD++ L K L GG+ PI A+LA
Sbjct: 196 SKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILA 254
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
            +EV  +  PG+HGST+GGNPLAC+     +D +  E ++ +  ++G  F+ +L      
Sbjct: 255 REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKG 312
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
                             L+L +    E  D  +K  + GL+    +  ++R  P L I 
Sbjct: 313 KVKG------------RGLMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQ 360
Query: 244 EQELREGLDII 254
           ++ +   + ++
Sbjct: 361 KEHIDRAISVL 371

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 18/264 (6%)
Query: 6   DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK 65
            P   + FGP       +P+ND+ A++A +  + + CA +VEPIQGE G       +LK 
Sbjct: 169 QPKYSDGFGPKPADIIHVPFNDLHAVKAVM--DDHTCAVVVEPIQGEGGVQAATPEFLKG 226
Query: 66  VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
           +R LC ++  L + DEVQ G+GRTG L A  +  V PDI+   KAL GG +P+SA+L   
Sbjct: 227 LRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQ 285
Query: 126 EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXX 185
           E+      G+HGSTYGGNPLAC +A  A D+I    +++  +   + F   L +      
Sbjct: 286 EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQA------ 339
Query: 186 XXXXXXXXXXXXXINTLILSVSAILE------VYDVCIKMKDAGLVTKPISNNIIRLSPA 239
                        I  + L + A L+        D      +AG++      +++R +P+
Sbjct: 340 ---IDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPS 396
Query: 240 LNITEQELREGLDIIINTINTMAA 263
           L + E ++ EG+      +  + A
Sbjct: 397 LVVEEADIHEGMQRFAQAVGKVVA 420

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 129/260 (49%), Gaps = 17/260 (6%)
Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           T  P     F P +PG+    +N+V+ L  K+  + ++CA  +EPIQGE+G V     +L
Sbjct: 137 TGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM--SEDVCAVFLEPIQGESGIVPATKEFL 194
Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           ++ R LC +Y+ L + DEVQ G+GRTGKL A     V PD++   K L GG+ PI AV+ 
Sbjct: 195 EEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIV 253
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
            +E    L PG HG+T+GGNPLAC+  +T +  + +E  +E   + G     +L      
Sbjct: 254 -NERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 312
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSPALN 241
                             L++ +    EV   +V  K  +  L+  P  NN IR  P L 
Sbjct: 313 YDVVADVRGMG-------LMIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLT 365
Query: 242 ITEQELREGLDIIINTINTM 261
           +   E    +D+ + T+  +
Sbjct: 366 VEYGE----IDLAVETLKKV 381

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
           +  T  P     F P +PG+    +N+V+ L  + K + ++CA  +EPIQGE+G V    
Sbjct: 146 LTATGQPKYQKPFEPLVPGFEYFEFNNVEDL--RRKXSEDVCAVFLEPIQGESGIVPATK 203
Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
            +L++ R LC +Y+ L + DEVQ G GRTGKL A     V PD++   K L GG+ PI A
Sbjct: 204 EFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGA 262
Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
           V+  +E    L PG HG+T+GGNPLAC+  +T +  + +E  +E   + G     +L   
Sbjct: 263 VIV-NERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQEX 321
Query: 181 ANXXXXXXXXXXXXXXXXINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSP 238
                                L + +    EV   +V  K  +  L+  P  NN IR  P
Sbjct: 322 KEEYDVVADVRGXG-------LXIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLP 374
Query: 239 ALNITEQELREGLDIIINTINTM 261
            L +   E    +D+ + T+  +
Sbjct: 375 PLTVEYGE----IDLAVETLKKV 393

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 27/227 (11%)
Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           +     EPIQGE G V+P   +  +++ L  +Y +L + DEVQ GLGRTGKL AI   + 
Sbjct: 213 VAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
            PD++ L KAL GG+ PI A +   ++     PG H +T+GGN LAC +    +D++  +
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGGNALACAIGSKVIDIV--K 328
Query: 161 NMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMK 220
           +++ +  ++G+IF  EL   A+                 +   + ++  LE  +  ++ +
Sbjct: 329 DLLPHVNEIGKIFAEELQGLAD-----------------DVRGIGLAWGLEYNEKKVRDR 371
Query: 221 ------DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
                   GL+  P   + IR+ P L I+E+E ++GLDI+   I  +
Sbjct: 372 IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
           EN+++ A  +G+  +  L + A                 I        N     ++A   
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
             ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
           EN+++ A  +G+  +  L + A                 I        N     ++A   
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
             ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+ A ++EPIQGE G +VP DG+L  +   C + +V+FIADEVQTG  RTG + A  +E 
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           + PD+++    ++GGL P+SAV    E+M +      G TYGGNP+AC  A+  ++ I  
Sbjct: 287 IDPDLIVTAXGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345
Query: 160 ENMIENAYKMGEIFR---SELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVC 216
           E ++  A ++ +I +     L +  +                +        A L    +C
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADL-TKALC 404
Query: 217 IKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDII 254
                AG++        N++R  P L+I +  L EGLD++
Sbjct: 405 AGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           +I A ++EP+QGE G       +++++RALC ++ ++ IADE Q+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
           EN+++ A  +G+  +  L + A                 I        N     ++A   
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
             ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           +I A ++EP+QG  G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
           EN+++ A  +G+  +  L + A                 I        N     ++A   
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
             ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
           +T +P     F P +     IPYNDV+AL  K   +    A ++EP+QGE G       +
Sbjct: 150 VTWEPKYREPFLPLVEPVEFIPYNDVEAL--KRAVDEETAAVILEPVQGEGGVRPATPEF 207
Query: 63  LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
           L+  R +  +   L I DE+QTG+GRTGK  A  +  + PDI+ L KAL GG+ P+   +
Sbjct: 208 LRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAV 266
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
             +EV  ++  G HG+T+GGNPLA    + A+  +    + E A ++G  F  +L +
Sbjct: 267 MREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRA 323

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 11/222 (4%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+ A ++EPI GE G +VP DG+L  ++  C   +V+FIADEVQTG  RTG + A  +E+
Sbjct: 244 NLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHEN 303
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+++    ++ G +P+SAV    E+M        G T+GGNP+AC  A+  ++ I  
Sbjct: 304 VEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAALATIETIER 362
Query: 160 ENMIENAYK-----MGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYD 214
           + M+E A +     M  + R  L +  +                + +      A L    
Sbjct: 363 DGMVERARQIERLVMDRLLR--LQAADDRLGDVRGRGAMIAMELVKSGTAEPDAAL-TQK 419
Query: 215 VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
           +      AG++  T  +  N+IRL P L I+++ L EGLDI+
Sbjct: 420 LAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDIL 461

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
           +T +      F P + G     YND+ ++E  +  N   CA ++E +QGE G    +  +
Sbjct: 144 LTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTCAIILESVQGEGGINPANKDF 201
Query: 63  LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
            K +R LC + ++L IADE+Q G GR+GK  A  +  + PDI    KAL  GL   + V+
Sbjct: 202 YKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKALGCGLSVGAFVI 261
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169
                  +L  G HGSTYGGNPL C       ++  EE ++EN  K+
Sbjct: 262 NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKL 308

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
           N+ A ++EP+ GE G VVP  G+L  ++  C+    +F+ADEVQTG  RTG L A  +E+
Sbjct: 228 NVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHEN 287
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PD+++  K ++GGL P+SAV    E+M     G  G TYGGNPLAC  A+  +D I  
Sbjct: 288 VVPDLIVTAKGIAGGL-PLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIER 346
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKM 219
           EN++  A  +GE   S L + A                 +   ++         D+  ++
Sbjct: 347 ENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVE--LVKPGTTEPDADLTKRV 404
Query: 220 KDA----GLV--TKPISNNIIRLSPALNITEQELREGLDII 254
             A    GLV  T     N++R  P L++ +  L EGLDI+
Sbjct: 405 AAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDIL 445

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)
Query: 36  KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
           + +  I A  +E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 95  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT-------LVPGTHGSTYGGNPLAC 147
             +E+V+PD++  GK ++GG  PI+   A +++          L    HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 148 KLAMTALDVILEENMIEN----AYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLI 203
            +A+  L +   EN++E     + K+  + +   + P                       
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 204 LSVSAILEV-YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
               A   + Y V +KM++ G++T+P+  ++I   P L  T +EL E + I+   I+ + 
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 263 A 263
           +
Sbjct: 445 S 445

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)
Query: 36  KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
           + +  I A  +E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 95  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT-------LVPGTHGSTYGGNPLAC 147
             +E+V+PD++  GK ++GG  PI+   A +++          L    HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 148 KLAMTALDVILEENMIEN----AYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLI 203
            +A+  L +   EN++E     + K+  + +   + P                       
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 204 LSVSAILEV-YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
               A   + Y V +KM++ G++T+P+  ++I   P L  T +EL E + I+   I+ + 
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 263 A 263
           +
Sbjct: 445 S 445

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 8/153 (5%)
Query: 26  NDVDALEAKL-KSNPN-ICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNVLFIADEV 82
            D + L A L +  P  + AFM EP+ G +  A+ P  GY ++VR +C +  ++FIADEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 83  QTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HG 137
            +G+GR G  LA+  +  V PDI +LGK L+ G  P++ +LA  +V  T++ G+    HG
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMG 170
            TY G+P++    ++ LD++  E++   A + G
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVEREDLTGAAKERG 326

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
           + TD  +   F P +P      Y+   A EA+L  +   + A +VEP+ QG  G    D 
Sbjct: 197 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 254
Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
            YL  +R +C +Y VL I DE+ TG GRTG L A  +  V PDI+ +GKAL+GG   ++A
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 314
Query: 121 VLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTALDVILEENM 162
            L   +V  T+  G      HG T+  NPLAC +++ +++++L ++ 
Sbjct: 315 TLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDW 361

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 11/237 (4%)
Query: 34  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
           +L    NI A  VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG + 
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 94  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL---------VPGTHGSTYGGNP 144
                 V PD++ + K ++ G  P+ AV+A  E+  T          V   HG TY  +P
Sbjct: 273 GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHP 332
Query: 145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLIL 204
           +AC   + AL ++ +EN++++  ++   F   L                     I     
Sbjct: 333 VACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNFGLAGAIQIAPR 391
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
              AI+  ++  + +  AG   +    + ++  P  N   Q+L    D +   +N +
Sbjct: 392 DGDAIVRPFEAGMALWKAGFYVR-FGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            + AF+ EP+QG  G +V  D Y  +++ +C +Y++L IADEV  G GRTG         
Sbjct: 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMG 282
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVI 157
           +RP I+ + K LS G  PI   +  DEV   +      HG TY G+P+A  +A+  L ++
Sbjct: 283 IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL 342
Query: 158 LEENMIEN 165
            EEN++++
Sbjct: 343 EEENILDH 350

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 24/287 (8%)
Query: 1   MLITTDPTSY-NEFGPHMPGYNIIPYN-----------------DVDALEAKLKSNPNIC 42
           M +T     Y ++FGP  P    +P +                  +  +E ++ +  ++ 
Sbjct: 169 MALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ-SLA 227
Query: 43  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
           A ++EPIQGE G +VP  G+L  + A  S+  V+FIADEVQTG  RTG   A  +E + P
Sbjct: 228 AIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVP 287
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
           DIV +   ++GG+ P+SAV    E+M  +  G  G TYGGNP+ C  A+ AL V+ E ++
Sbjct: 288 DIVTMAXGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDL 346
Query: 163 IENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTL---ILSVSAILEVYDVCIKM 219
              A  +     S LS+ A                 I  +    L   A L        +
Sbjct: 347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEAL 406
Query: 220 KDAGLV-TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
               L+ T     N+IRL P L I +  L EG+  + + I   A+ +
Sbjct: 407 SQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
           + TD  +   F P +P      Y+   A EA+L  +   + A +VEP+ QG  G    D 
Sbjct: 177 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 234
Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
            YL  +R +C +Y VL I DE+ TG GRTG L A  +  V PDI+ +GKAL+GG   ++A
Sbjct: 235 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 294
Query: 121 VLADDEVMGTLVPGTHGS-----TYGGNPLACKLAMTALDVILEENM 162
            L   +V  T+  G  G+     T+  NPLAC +++ +++++L ++ 
Sbjct: 295 TLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDW 341

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3   ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
           + TD  +   F P +P      Y+   A EA+L  +   + A +VEP+ QG  G    D 
Sbjct: 202 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 259
Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
            YL  +R +C +Y VL I DE+ TG GRTG L A  +  V PDI+ +GKAL+GG   ++A
Sbjct: 260 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 319
Query: 121 VLADDEVMGTLVPGTHGS-----TYGGNPLACKLAMTALDVILEENM 162
            L   +V  T+  G  G+     T+  NPLAC +++ +++++L ++ 
Sbjct: 320 TLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDW 366

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPL 315

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 19/240 (7%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
             PD +I  K L+ G +P+ AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
           A+DV++ E + EN  ++   F   L   A                               
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
           ++S    + + C    D GL+ +P+  +++ L P   +TE ++ E  D +   ++ + A+
Sbjct: 410 NLSVSERIANTCT---DLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           I AF+ EPI    G +     Y K V   C ++  L I+DEV  G GRTGK       DV
Sbjct: 216 IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNYDV 275
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVM------GTLVPGTHGSTYGGNPLACKLAMTAL 154
           +PDI+   K ++    P+SA     E+       G      H +T+GGNP AC LA+  L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 155 DVILEENMIENAYKMGEIFRSELS 178
           ++I  EN+IE + + G +   +L 
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLK 359

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 19/239 (7%)
Query: 41  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
           I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D 
Sbjct: 237 IAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF 296
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTA 153
            PD +I  K L+ G +P  AV+   E+   L           HG T  G+P+ C +A+ A
Sbjct: 297 TPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKA 356
Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLILS 205
           +DV+  E + EN  ++   F   L   A                               +
Sbjct: 357 IDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDGN 416
Query: 206 VSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
           +S    + + C    D GL+ +P+  +++ L P   +TE +  E  D +   ++ + A+
Sbjct: 417 LSVSERIANTCT---DLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLEKALDKVFAE 471

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 18/252 (7%)
Query: 28  VDALEAKLKS-NPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           V   E +++S  P+ I AF+ EPI    G ++P  GY  + +A+C ++++L+I+DEV TG
Sbjct: 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTG 266
Query: 86  LGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVM----GTLVPG---THG 137
            GR G+  A      V PDI+   K ++ G  P+  +   + V+    G    G   T+G
Sbjct: 267 FGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNG 326
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXX 197
            TY   P+AC  A+  ++++  E +++ A +M + F + L+S                  
Sbjct: 327 YTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALAS-LRDLPGVAETRSVGLVG 385
Query: 198 XINTLILSVSAILEVYDVCIKMK------DAGLVTKPISNNIIRLSPALNITEQELREGL 251
            +  L+    A     D    +K      + GL+ +P+ +  + +SP L I+  ++ E +
Sbjct: 386 CVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDEMV 444
Query: 252 DIIINTINTMAA 263
            I+   I  ++A
Sbjct: 445 AIMRQAITEVSA 456

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG G TGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG G+TGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHA 263
Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 19/240 (7%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYD 295
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
             PD +I    L+ G +P+ AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 296 FTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
           A+DV++ E + EN  ++   F   L   A                               
Sbjct: 356 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 415
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
           ++S    + + C    D GL+  P+  +++ L P   +TE ++ E  D +   ++ + A+
Sbjct: 416 NLSVSERIANTCT---DLGLICFPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 471

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 19/240 (7%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 228 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYD 287
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
             PD +I    L+ G +P+ AV+   ++   +           HG T  G+P+ C +A+ 
Sbjct: 288 FMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALK 347
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
           A+DV++ E + EN  ++   F + L   A+                              
Sbjct: 348 AIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDA 407
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
           ++S    + + C    D GL+ +P+  +I+ L P   +TE ++ E  + +   ++ + A+
Sbjct: 408 NLSVSERIANTCT---DLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEKALDKVFAE 463

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            + AF+ EPIQG  G +VP   Y  ++  +C +Y+VL +ADEV  G GRTG+     +  
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 156
            +PD+    K LS G  PI AV     V   L+ G    HG TY G+P+   +A   +  
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338
Query: 157 ILEENMIEN 165
           + +E +++ 
Sbjct: 339 LRDEGIVQR 347

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 12/233 (5%)
Query: 40  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
            + A ++EPIQGE G +VP +G+L  +     +  ++FIADEVQ+G  RTG+  A+ +E 
Sbjct: 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
           V PDI+ + K ++GGL P+SA+    +++  + PG  G TYGGNP+AC  A+ A+D + +
Sbjct: 286 VVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ 344
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSV----------SAI 209
            ++   A  + E+   +L   A                    L + +             
Sbjct: 345 HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELT 404
Query: 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
             V   C+K +   ++T     N+IRL P L I+++ L +GL+++   I   A
Sbjct: 405 KAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAHA 456

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 96  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
            +  LDV+  + ++  A  MG+  R  L
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGL 341

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 96  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
            +  LDV+  + ++  A  MG+  R  L
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGL 341

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 198 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 257
Query: 96  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 258 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 312
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
            +  LDV+  + ++  A  MG+  R  L
Sbjct: 313 GLRVLDVVQRDGLVARANVMGDRLRRGL 340

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 96  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 257 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 311
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
            +  LDV+  + ++  A  MG+  R  L
Sbjct: 312 GLRVLDVVQRDGLVARANVMGDRLRRGL 339

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32  EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
            A  ++ P +I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91  KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
              A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GGN  
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLASTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
               A   L+VI  E + E A + G+  R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32  EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
            A  ++ P +I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91  KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
              A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GGN  
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
               A   L+VI  E + E A + G+  R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 12/258 (4%)
Query: 15  PHMPGYNIIPYND--VDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALC 70
           P+ P Y   P  D  +  L  KL + P  +I A  +EPIQ + G +VP DG+L+K   +C
Sbjct: 186 PYRP-YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 244
Query: 71  SQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
             + +L + DEV+ GL R+G+L    +E   PDI++L     GG  P+SAV+A  E++  
Sbjct: 245 RAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-D 302
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXX 190
                   T  GNP++    +  L+ I  +++   A + G + R  LS  A         
Sbjct: 303 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI 362
Query: 191 XXXXXXXXINTLILSVS---AILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ 245
                   +  +    S   A  E   +  +    GLV   +  + N++  +P L ITE 
Sbjct: 363 RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 422
Query: 246 ELREGLDIIINTINTMAA 263
           ++ + LD++    + ++A
Sbjct: 423 DIHKALDLLDRAFSELSA 440

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32  EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
            A  ++ P +I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91  KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
              A    DV PDIV  GK        +  V+A    DEV   +  VP    S++GGN  
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSSWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
               A   L+VI  E + E A + G+  R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 12/258 (4%)
Query: 15  PHMPGYNIIPYND--VDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALC 70
           P+ P Y   P  D  +  L  KL + P  +I A  +EPIQ + G +VP DG+L+K   +C
Sbjct: 173 PYRP-YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231
Query: 71  SQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
             + +L + DEV+ GL R+G+L    +E   PDI++L     GG  P+SAV+A  E++  
Sbjct: 232 RAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-D 289
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXX 190
                   T  GNP++    +  L+ I  +++   A + G + R  LS  A         
Sbjct: 290 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI 349
Query: 191 XXXXXXXXINTLILSVS---AILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ 245
                   +  +    S   A  E   +  +    GLV   +  + N++  +P L ITE 
Sbjct: 350 RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 409
Query: 246 ELREGLDIIINTINTMAA 263
           ++ + LD++    + ++A
Sbjct: 410 DIHKALDLLDRAFSELSA 427

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A+    +  PN I   ++EP+ G AG + PD G+L+ +R L  QY  L + DEV
Sbjct: 166 PYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEV 225
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R     A     V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 226 MTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGGL-PVGAYGGRAEIMKMVAPAGPVYQAGT 283
Query: 140 YGGNPLACKLAMTALDVILEENMIEN 165
             GNPLA    +  L+++      E+
Sbjct: 284 LSGNPLAMTAGIKTLEILSRPGSYEH 309

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 32  EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
            A  ++ P +I  F+ EPIQG  G       +   +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91  KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
              A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GGN  
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
               A   L+VI  E + E A + G+  R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 23  IPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           +PYND+++++   +    +I   +VEP+ G  G V P +G+L+ +R +  QY  L I DE
Sbjct: 190 VPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDE 249
Query: 82  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGS 138
           V TG  R     A  Y  V PD+  LGK + GGL P+ A     E+M  + P        
Sbjct: 250 VMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMEQIAPSGPIYQAG 307
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181
           T  GNPLA    +  L   L  +  +N  K G+     +S  A
Sbjct: 308 TLSGNPLAMTAGLETLKQ-LTPDSYKNFIKKGDRLEEGISKAA 349

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV
Sbjct: 187 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 246
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R           V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 247 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 304
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
             GNPLA    +  L+++ +    E
Sbjct: 305 LSGNPLAMTAGIKTLELLRQPGTYE 329

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV
Sbjct: 187 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 246
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R           V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 247 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 304
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
             GNPLA    +  L+++ +    E
Sbjct: 305 LSGNPLAMTAGIKTLELLRQPGTYE 329

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R           V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 242 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
             GNPLA    +  L+++ +    E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R           V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 242 ITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
             GNPLA    +  L+++ +    E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24  PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
           PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
            TG  R           V PD+  LGK + GGL P+ A     E+M  + P        T
Sbjct: 242 ITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
             GNPLA    +  L+++ +    E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 22  IIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           ++ YND + L   LK     I A + EP+ G AG +VP + +LK +      Y VL IAD
Sbjct: 180 VLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIAD 238
Query: 81  EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM---GTLVPGTHG 137
           EV TG  R     A     ++PD+V LGK L GGL P +A     E+M     L P    
Sbjct: 239 EVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQA 296
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAY 167
            T  GNPLA    +  L+ +LEEN    AY
Sbjct: 297 GTLSGNPLAMAAGLATLE-LLEENPGYYAY 325

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 22  IIPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           + PYNDV+ALE    +    I   +VEP+   AG + P   +L  ++ L  +   L I D
Sbjct: 184 VTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD 243
Query: 81  EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HG 137
           EV TG  R G   A  Y ++  DI++LGK + GG +P+ AV    EVM  L P     + 
Sbjct: 244 EVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNA 301
Query: 138 STYGGNPLACKLAMTALDVILEE 160
            T+  +P+     +  L  + EE
Sbjct: 302 GTFNAHPITMAAGLATLKALEEE 324

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 23  IPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           +P+N+V+ L+  L K    + A +VEPI G  G V P  G+L+KV  L  +   L I DE
Sbjct: 184 VPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE 243
Query: 82  VQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---MGTLVPG 134
           V T      G    LL      V PD+  LG  + GGL PI A     E+   +  L P 
Sbjct: 244 VITAFRFXYGGAQDLLG-----VTPDLTALGXVIGGGL-PIGAYGGKKEIXEQVAPLGPA 297
Query: 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170
               T  GNP +    +  L+V+ +E + E   ++G
Sbjct: 298 YQAGTXAGNPASXASGIACLEVLQQEGLYEKLDELG 333

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 23  IPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
           + YND+++++   +    +I   +VEP+ G  G V P  G+L+ +R +  Q   L I DE
Sbjct: 182 VAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDE 241
Query: 82  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGS 138
           V TG  R        Y  V PD+  LGK + GGL P+ A     E+   + P        
Sbjct: 242 VXTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIXRQVAPSGPIYQAG 299
Query: 139 TYGGNPLACKLAMTALDVILEENMIE 164
           T  GNPLA       L  +  E+ +E
Sbjct: 300 TLSGNPLAXAAGYETLVQLTPESYVE 325

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 25  YNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
           YND+ ++    +  P  +   +VEP+ G    + P   +L  +RALC ++  L I DEV 
Sbjct: 184 YNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVX 243
Query: 84  TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTY 140
           TG  R     A  Y  V PD+  LGK + GG  P+ A     EV   L P        T 
Sbjct: 244 TGF-RVALAGAQDYYHVIPDLTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTL 301
Query: 141 GGNPLACKLAMTALDVILEENMIE 164
            GNP+A       L  I +  + E
Sbjct: 302 SGNPIAXAAGFACLTEISQVGVYE 325

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 36  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
           K    +   +VEPIQ E G     D + +K+R +  ++   F+ DEVQTG G TGK  A 
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313
Query: 96  HYE--DVRPDIVILGKA-LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 152
            +   D   D++   K  ++GG +         E      P    +T+ G+P    L   
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGDPSKNLLLAE 366
Query: 153 ALDVILEENMIENAYKMGEI 172
            +++I  E+++ NA   G++
Sbjct: 367 VINIIKREDLLSNAAHAGKV 386

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 22  IIPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           +I  +D++ + E       +I AF+ EP+    G     D +L++   L  QY  LFI D
Sbjct: 182 LIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD 241
Query: 81  EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----- 135
           EV +G  R G        DV+PD+  L KA S G  P   +   ++VMG L  G+     
Sbjct: 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVL 299
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
           H  T+ GNP+    A+ A+D ILE+++      +G+  R  ++
Sbjct: 300 HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMN 342

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 22  IIPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           ++PYND     A++ +  P I   +VEP+QG +G +     +L+ +R   +Q   L + D
Sbjct: 201 VLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260
Query: 81  EVQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT- 135
           EV T      G   KL       +R D+  LGK + GG+    A     +VM    P T 
Sbjct: 261 EVMTSRLAPHGLANKL------GIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTG 313
Query: 136 ---HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
              H  T+  N +        L  +          + GE  R+ L++
Sbjct: 314 PLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA 360

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 35  LKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
           ++ + ++ A ++EP I G  G  + D  + + +   C    +  I DEV TG  R G   
Sbjct: 589 VRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET 648
Query: 94  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLAC 147
                  +PDI    K L+GG+ P++  LA D V  +    +      HG +Y  + + C
Sbjct: 649 TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGC 708
Query: 148 KLAMTALDVILEENMIENAYKMGEIFR 174
             A  A+    +     N    G+  R
Sbjct: 709 ATAAKAIQWFKDPETNHNITSQGKTLR 735

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 7/147 (4%)
Query: 35  LKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
           ++ + ++ A ++EP I G  G    D  + + +   C    +  I DEV TG  R G   
Sbjct: 589 VRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET 648
Query: 94  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLAC 147
                  +PDI    K L+GG  P++  LA D V  +    +      HG +Y  +   C
Sbjct: 649 TTELLGCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGC 708
Query: 148 KLAMTALDVILEENMIENAYKMGEIFR 174
             A  A+    +     N    G+  R
Sbjct: 709 ATAAKAIQWFKDPETNHNITSQGKTLR 735

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 25  YNDVDALEAKLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
           YNDV+     LK + + CA  +VEP+ G  G V  +  +L  +RA  S+   L I DEV 
Sbjct: 217 YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 84  TGL---GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----T 135
           T     G   ++L I       D+  LGK + GG+    A     ++M    P       
Sbjct: 277 TSRLSGGGAQEMLGI-----SADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFA 330
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
           H  T+  N L       AL  I       +    G+ FR+ L+
Sbjct: 331 HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLN 373

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-128
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-127
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-127
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	3e-89
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	9e-88
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	4e-83
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	5e-83
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	1e-82
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	4e-78
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	7e-77
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-76
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	2e-76
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	8e-75
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	6e-72
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	3e-70
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	2e-65
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	3e-60
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-59
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	4e-59
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	4e-58
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	3e-57
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	3e-56
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	2e-55
3hmu_A	472	Aminotransferase, class III; structural genomics,	4e-55
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	9e-55
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	2e-54
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-54
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	5e-53
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	4e-32
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	1e-31
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	7e-29
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	1e-28
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	3e-28
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	5e-28
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	8e-27
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-24
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	1e-06
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	1e-05
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	5e-05
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	7e-05
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	7e-05
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	1e-04
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	2e-04
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	2e-04
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	7e-04

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  370 bits (951), Expect = e-128
 Identities = 145/258 (56%), Positives = 190/258 (73%), Gaps = 8/258 (3%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +TDPTSY+ FGP MPG++IIPYND+ ALE  L  +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERAL-QDPNVAAFMVEPIQGEAGVVVPDPGYL 246

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL 
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL    + 
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366

Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                    G GL   +N +++  +   + + VC++++D GL+ KP   +IIR +P L I
Sbjct: 367 ---VVTAVRGKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420

Query: 243 TEQELREGLDIIINTINT 260
            E ELRE ++II  TI +
Sbjct: 421 KEDELRESIEIINKTILS 438

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  368 bits (946), Expect = e-127
 Identities = 125/262 (47%), Positives = 180/262 (68%), Gaps = 7/262 (2%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +T     + FGP  P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL
Sbjct: 177 STTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYL 235

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           + V  +C +YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA
Sbjct: 236 QGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLA 295

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           +D++M  + PG HGSTYGGNPLA  + + AL+V++ E + ENA K+G  F   L      
Sbjct: 296 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 355

Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
           SK   +   G GL   +  +      +  V D+C+K+K+ GL+T+ + +  IRL+P L I
Sbjct: 356 SKI-VRDVRGKGL---LCAIEFKNELV-NVLDICLKLKENGLITRDVHDKTIRLTPPLCI 410

Query: 243 TEQELREGLDIIINTINTMAAK 264
           T+++L E  +II+ T+     +
Sbjct: 411 TKEQLDECTEIIVKTVKFFDER 432

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  365 bits (939), Expect = e-127
 Identities = 105/257 (40%), Positives = 159/257 (61%), Gaps = 13/257 (5%)

Query: 4   TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
           +++      FGP +PG  +IPY D++AL+A +   PN  AF++EPIQGEAG  +P  G+L
Sbjct: 148 SSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI--TPNTAAFILEPIQGEAGINIPPAGFL 205

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
           K+   +C + NVLF+ADE+QTGLGRTGK+ A  +++V PD+ ILGKAL GG++PIS   A
Sbjct: 206 KEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAA 265

Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
           + +++G   PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE    +L    N 
Sbjct: 266 NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325

Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
                    G GL      + L+  A       C ++K AGL+ K    N+IR++P L I
Sbjct: 326 ---MITEVRGKGL---FIGIELNEPA----RPYCEQLKAAGLLCKETHENVIRIAPPLVI 375

Query: 243 TEQELREGLDIIINTIN 259
           +E++L      I   ++
Sbjct: 376 SEEDLEWAFQKIKAVLS 392

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  269 bits (689), Expect = 3e-89
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 15/244 (6%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P +     IPYNDV+AL+  +  +    A ++EP+QGE G       +L+  R +  +
Sbjct: 160 FLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE 217

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
              L I DE+QTG+GRTGK  A  +  + PDI+ L KAL GG+ P+   +  +EV  ++ 
Sbjct: 218 KGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMP 276

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
            G HG+T+GGNPLA    + A+  +    + E A ++G  F  +L +  +      +   
Sbjct: 277 KGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVR 333

Query: 193 G-GLKKSINTLILSVSAILEVYDVCIK-MKDAGLVTKPISNNIIRLSPALNITEQELREG 250
           G G       L++ +    +      +  K+  ++       +IR  P L I +++L   
Sbjct: 334 GMG-------LMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERV 386

Query: 251 LDII 254
           ++ +
Sbjct: 387 VEAV 390

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  265 bits (681), Expect = 9e-88
 Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 6/251 (2%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FGP       +P+ND+ A++A +  + + CA +VEPIQGE G       +LK +R LC +
Sbjct: 176 FGPKPADIIHVPFNDLHAVKAVM--DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE 233

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           +  L + DEVQ G+GRTG L A  +  V PDI+   KAL GG  P+SA+L   E+     
Sbjct: 234 HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFH 292

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
            G+HGSTYGGNPLAC +A  A D+I    +++  +   + F   L +   +      +  
Sbjct: 293 VGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG 352

Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
            GL   +    L         D      +AG++      +++R +P+L + E ++ EG+ 
Sbjct: 353 MGL---LIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQ 409

Query: 253 IIINTINTMAA 263
                +  + A
Sbjct: 410 RFAQAVGKVVA 420

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  252 bits (647), Expect = 4e-83
 Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 17/246 (6%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P +PG++    ND+D++   L  +      ++E IQGE G     + +L K++ +C +
Sbjct: 147 FEPLVPGFSYAKLNDIDSVYKLL--DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE 204

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
            +VL I DEVQTG+GRTG+  A  + +++PD++ L K L GG+ PI A+LA +EV  +  
Sbjct: 205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFT 263

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG+HGST+GGNPLAC+     +D +  E ++ +  ++G  F+ +L           K+  
Sbjct: 264 PGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKG-----KVKG 316

Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
            G       L+L +    E  D  +K  + GL+    +  ++R  P L I ++ +   + 
Sbjct: 317 RG-------LMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAIS 369

Query: 253 IIINTI 258
           ++   +
Sbjct: 370 VLREIL 375

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  253 bits (648), Expect = 5e-83
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 11/248 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P + G     YND+ ++E  +  N   CA ++E +QGE G    +  + K +R LC +
Sbjct: 154 FKPLISGVKFAKYNDISSVEKLV--NEKTCAIILESVQGEGGINPANKDFYKALRKLCDE 211

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTL 131
            ++L IADE+Q G+GR+GK  A  +  + PDI+   KAL  GL  + A + + +V   +L
Sbjct: 212 KDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSL 270

Query: 132 VPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS 191
             G HGSTYGGNPL C       ++  EE ++EN  K+       L    N+     K  
Sbjct: 271 EAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK 330

Query: 192 SGGLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
             G       +  LS+   ++V  V  K ++  L+      N +R  P L + ++ + E 
Sbjct: 331 GLGF------MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEM 384

Query: 251 LDIIINTI 258
            + +   +
Sbjct: 385 SEKLRKAL 392

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  252 bits (646), Expect = 1e-82
 Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 11/250 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           F P +PG+    +N+V+ L  K+  + ++CA  +EPIQGE+G V     +L++ R LC +
Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKM--SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 215

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           Y+ L + DEVQ G+GRTGKL A     V PD++   K L GG+ PI AV+ ++     L 
Sbjct: 216 YDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLE 273

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HG+T+GGNPLAC+  +T +  + +E  +E   + G     +L     +      +  
Sbjct: 274 PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG 333

Query: 193 GGLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
            GL      +I +     +   +V  K  +  L+  P  NN IR  P L +   E+   +
Sbjct: 334 MGL------MIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAV 387

Query: 252 DIIINTINTM 261
           + +   +  +
Sbjct: 388 ETLKKVLQGI 397

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  241 bits (618), Expect = 4e-78
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 36/281 (12%)

Query: 1   MLITTDPTSYNE-FGPHMPGYNIIPY----------NDVDALEAKLKS---NPNICAFMV 46
           + +T     Y+   G          Y          + + ++    K+     +I A ++
Sbjct: 146 LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205

Query: 47  EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106
           EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    V PD+  
Sbjct: 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT 265

Query: 107 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA 166
             K+++GG  P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +EN+++ A
Sbjct: 266 FAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKA 324

Query: 167 YKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVSAILEVYDV 215
             +G+  +  L + A K              + +L   G     +  + +        ++
Sbjct: 325 NDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--------EI 376

Query: 216 CIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 254
             + +D GL+        N++R+   L I + ++R+GL+II
Sbjct: 377 VARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  239 bits (611), Expect = 7e-77
 Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 9/248 (3%)

Query: 10  YNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRA 68
           Y   G   P    +    +    A  ++ P +I  F+ EPIQGE G       +   +R 
Sbjct: 200 YMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRE 259

Query: 69  LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
           LC +++ L I DEVQTG G TG   A    DV PDIV  GK            + +    
Sbjct: 260 LCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN 319

Query: 129 GTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
              VP    ST+GGN      A   L+VI  E + E A + G+  R+ L   A    A  
Sbjct: 320 VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVV 379

Query: 189 KLSSG-GLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
               G GL      +   S+    +  ++  ++    ++  P   + +R  P L ++  E
Sbjct: 380 LDPRGRGL------MCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAE 433

Query: 247 LREGLDII 254
           +   +  +
Sbjct: 434 IDAAIAAV 441

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  238 bits (610), Expect = 1e-76
 Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 45/289 (15%)

Query: 1   MLITTDPTSYNE-FGPHMPGYNIIPYND------------------VDALEAKLKSN--- 38
           M +T     Y + FGP  P     P +                          +      
Sbjct: 166 MALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA 225

Query: 39  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
            N+ A ++EPIQGE G +VP DG+L  +   C + +V+FIADEVQTG  RTG + A  +E
Sbjct: 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285

Query: 99  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158
            + PD+++  K ++GGL P+SAV    E+M +      G TYGGNP+AC  A+  ++ I 
Sbjct: 286 GIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE 344

Query: 159 EENMIENAYKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVS 207
            E ++  A ++ +I +  L     +              + +L   G  +    L     
Sbjct: 345 SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADL----- 399

Query: 208 AILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 254
                  +C     AG++        N++R  P L+I +  L EGLD++
Sbjct: 400 ----TKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  237 bits (606), Expect = 2e-76
 Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 49/284 (17%)

Query: 1   MLITTDPTSYNE-FGPHMPGYNIIPYND-------------------------VDALEAK 34
           + +T          GP MPG   +PY +                          D +   
Sbjct: 147 ISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVN 206

Query: 35  LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
           L     +     EPIQGE G V+P   +  +++ L  +Y +L + DEVQ GLGRTGKL A
Sbjct: 207 LVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFA 266

Query: 95  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154
           I   +  PD++ L KAL GG+ PI A +   ++     PG H +T+GGN LAC +    +
Sbjct: 267 IENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVI 324

Query: 155 DVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAIL---- 210
           D++  ++++ +  ++G+IF  EL                GL   +  + L+         
Sbjct: 325 DIV--KDLLPHVNEIGKIFAEELQ---------------GLADDVRGIGLAWGLEYNEKK 367

Query: 211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
               +  +    GL+  P   + IR+ P L I+E+E ++GLDI+
Sbjct: 368 VRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDIL 411

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  234 bits (598), Expect = 8e-75
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 40/295 (13%)

Query: 1   MLITTDPTSYNE-FGPHMPGYNIIPYND-------------VDALEAKLKSN---PNICA 43
           M +T     Y   FGP  P    +P +                   +++++     ++ A
Sbjct: 169 MALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAA 228

Query: 44  FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 103
            ++EPIQGE G +VP  G+L  + A  S+  V+FIADEVQTG  RTG   A  +E + PD
Sbjct: 229 IIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD 288

Query: 104 IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI 163
           IV + K ++GG+ P+SAV    E+M  +  G  G TYGGNP+ C  A+ AL V+ E ++ 
Sbjct: 289 IVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLP 347

Query: 164 ENAYKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVSAILEV 212
             A  +     S LS+ A +              + ++   G  +    L          
Sbjct: 348 ARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAAL---------T 398

Query: 213 YDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
             +  +    G++        N+IRL P L I +  L EG+  + + I   A+ +
Sbjct: 399 KSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  225 bits (577), Expect = 6e-72
 Identities = 63/295 (21%), Positives = 106/295 (35%), Gaps = 56/295 (18%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSNP--NI 41
              T         GP   G   IP                    +D     +      N+
Sbjct: 146 ASATYSAGRKG-VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 204

Query: 42  CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 101
            AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A   + V 
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 264

Query: 102 PDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILE 159
           PDI+ L K L  G  P++A++    +            +T+  +PL   + +  LDV+  
Sbjct: 265 PDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323

Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKL----------------SSGGLKKSINTLI 203
           + ++  A  MG+  R  L          F                       K+  + L 
Sbjct: 324 DGLVARANVMGDRLRRGL----LDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLG 379

Query: 204 LSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 254
             ++          +  + GL    +       + R++P L ++E E+  GL ++
Sbjct: 380 AKITR---------ECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 425

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  221 bits (566), Expect = 3e-70
 Identities = 75/301 (24%), Positives = 128/301 (42%), Gaps = 59/301 (19%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYND--------------VDALEAKLKSNP--NICAF 44
           M  +              G  ++PY D              +  L  KL + P  +I A 
Sbjct: 148 MAFSGHSVQA--DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 205

Query: 45  MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 104
            +EPIQ + G +VP DG+L+K   +C  + +L + DEV+ GL R+G+L    +E   PDI
Sbjct: 206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDI 265

Query: 105 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 164
           ++LGK L GGL P+SAV+A  E++          T  GNP++    +  L+ I  +++  
Sbjct: 266 LVLGKGLGGGL-PLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGLAVLETIDRDDLPA 323

Query: 165 NAYKMGEIFRSELSSPANK--------------------SKASFKLSSGGLKKSINTLIL 204
            A + G + R  LS  A +                     + S + +     K       
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAK------- 376

Query: 205 SVSAILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
                     +  +    GLV     ++ N++  +P L ITE ++ + LD++    + ++
Sbjct: 377 ----------LIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELS 426

Query: 263 A 263
           A
Sbjct: 427 A 427

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  210 bits (536), Expect = 2e-65
 Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 40/266 (15%)

Query: 7   PTSYNEFGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPDDGY 62
           P         +          ++ +E  +    K    +   +VEPIQ E G     D +
Sbjct: 221 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDF 280

Query: 63  LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PDIVILGKALSGGLYPISA 120
            +K+R +  ++   F+ DEVQTG G TGK  A  +  +    D++   K +  G      
Sbjct: 281 FRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG-FFHK 339

Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
                       P    +T+ G+P    L    +++I  E+++ NA   G++  + L   
Sbjct: 340 EEFRPN-----APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394

Query: 181 ANKSKA------------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP 228
             +               SF      ++                  +    ++ G++   
Sbjct: 395 QARYPQFISRVRGRGTFCSFDTPDESIRN----------------KLISIARNKGVMLGG 438

Query: 229 ISNNIIRLSPALNITEQELREGLDII 254
             +  IR  P L   +      L+I 
Sbjct: 439 CGDKSIRFRPTLVFRDHHAHLFLNIF 464

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  195 bits (499), Expect = 3e-60
 Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 56/271 (20%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
           V  ++          I AF++EPI    G ++    Y+K V   C ++  L I+DEV  G
Sbjct: 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICG 260

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 139
            GRTGK       DV+PDI+ + K ++    P+SA     E+              H +T
Sbjct: 261 FGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINT 320

Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP------------------- 180
           +GGNP AC LA+  L++I  EN+IE + +MG +   +L                      
Sbjct: 321 FGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGI 380

Query: 181 ---ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------S 230
               +K +K                          V + C   K+ GL+           
Sbjct: 381 ELVNDKETKEPIDNDKIA----------------SVVNAC---KEKGLIIGRNGMTTAGY 421

Query: 231 NNIIRLSPALNITEQELREGLDIIINTINTM 261
           NNI+ L+P L I+ +E+   +  +   +  +
Sbjct: 422 NNILTLAPPLVISSEEIAFVIGTLKTAMERI 452

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  194 bits (495), Expect = 1e-59
 Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 48/298 (16%)

Query: 5   TDPTSYNE-FGPHMPGYNIIPY----------------NDVDALEAKLKSNP-NICAFMV 46
                ++  +GP M      P                   +  L   L+ +   I A  +
Sbjct: 157 GSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSI 216

Query: 47  EP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105
           E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A  +E+V+PD++
Sbjct: 217 ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM 276

Query: 106 ILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVIL 158
             GK ++GG  PI+   A +++               HG +Y GN L C +A+  L +  
Sbjct: 277 AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE 336

Query: 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-------G------LKKSINTLILS 205
            EN++E   +  +     L                       G      L +S  T    
Sbjct: 337 SENIVEQVAEKSKKLHFLL--------QDLHALPHVGDIRQLGFMCGAELVRSKETKEPY 388

Query: 206 VSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263
            +     Y V +KM++ G++T+P+ + I    P L  T +EL E + I+   I+ + +
Sbjct: 389 PADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLASTAEELSEMVAIMKQAIHEVTS 445

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  193 bits (494), Expect = 4e-59
 Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 49/268 (18%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
              LE    +     I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G
Sbjct: 216 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICG 275

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
            GRTG        D  PD +I  K L+ G +P+ AV+   E+   L           HG 
Sbjct: 276 FGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGF 335

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----P-------------- 180
           T  G+P+ C +A+ A+DV++ E + EN  ++   F   L      P              
Sbjct: 336 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWAL 395

Query: 181 ---ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRL 236
               +K SK  F  +    ++                 +     D GL+ +P+  +++ L
Sbjct: 396 EAVKDKASKTPFDGNLSVSER-----------------IANTCTDLGLICRPLGQSVV-L 437

Query: 237 SPALNITEQELREGLDIIINTINTMAAK 264
            P   +TE ++ E  D +   ++ + A+
Sbjct: 438 CPPFILTEAQMDEMFDKLEKALDKVFAE 465

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  190 bits (484), Expect = 4e-58
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 29/280 (10%)

Query: 13  FGPHMPGYNIIPYND----------VDALEAK-LKSNP-NICAFMVEPIQG-EAGAVVPD 59
           + P M                     + L A   +  P  + AFM EP+ G    A+ P 
Sbjct: 151 YTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPA 210

Query: 60  DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPI 118
            GY ++VR +C +  ++FIADEV +G+GR G  LA+  +  V PDI +LGK L+ G  P+
Sbjct: 211 PGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPL 270

Query: 119 SAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 174
           + +LA  +V  T++ G+    HG TY G+P++    ++ LD++  E++   A + G    
Sbjct: 271 AGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLL 330

Query: 175 SELSSPANKSK-----------ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG 223
           + L +   +                 L      ++  T  ++           +      
Sbjct: 331 AGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGS 390

Query: 224 LVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263
                   + + L P L+IT  E+   L ++   +  +  
Sbjct: 391 GAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVLG 430

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  188 bits (480), Expect = 3e-57
 Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 30/260 (11%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
            D LE   L   P  I AF+ EPI G  G V P  GY +K++A+  +Y+VL +ADEV TG
Sbjct: 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG 266

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
            GR G +    +  ++PD++ + K L+    P+S V+  D V   LV G+       HG 
Sbjct: 267 FGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326

Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL----SSGG 194
           TY  +P+     +  L++I E +++ NA + G  FR+EL     K+    K        G
Sbjct: 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAEL----AKAVGGHKNVGEVRGDG 382

Query: 195 L---------KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITE 244
           +         K        S     +V         +G++ + +   +I+  +P L +T 
Sbjct: 383 MLAAVEFVADKDDRVFFDASQKIGPQVATAL---AASGVIGRAMPQGDILGFAPPLCLTR 439

Query: 245 QELREGLDIIINTINTMAAK 264
           ++    +    + + ++ A 
Sbjct: 440 EQADIVVSKTADAVKSVFAN 459

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  185 bits (472), Expect = 3e-56
 Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 57/267 (21%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
            D L       +  NI A  VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG
Sbjct: 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG 264

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---------H 136
            GRTG +       V PD++ + K ++ G  P+ AV+A  E+  T +            H
Sbjct: 265 FGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPH 324

Query: 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----------------- 179
           G TY  +P+AC   + AL ++ +EN++++  ++   F   L                   
Sbjct: 325 GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAG 384

Query: 180 -----PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNII 234
                P +                              ++  + +  AG   +   + + 
Sbjct: 385 AIQIAPRDGDAIVRP-----------------------FEAGMALWKAGFYVRFGGDTLQ 421

Query: 235 RLSPALNITEQELREGLDIIINTINTM 261
              P  N   Q+L    D +   +N +
Sbjct: 422 -FGPTFNSKPQDLDRLFDAVGEVLNKL 447

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  183 bits (468), Expect = 2e-55
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 23/254 (9%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
              LE K L+     + AF+ EPIQG  G +VP   Y  ++  +C +Y+VL +ADEV  G
Sbjct: 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG 264

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGG 142
            GRTG+     +   +PD+    K LS G  PI AV     V   L+ G    HG TY G
Sbjct: 265 FGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG 324

Query: 143 NPLACKLAMTALDVILEENMIENA-YKMGEIFRSELSSPANKSK-----------ASFKL 190
           +P+   +A   +  + +E +++     +G   +       ++ +            +F L
Sbjct: 325 HPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTL 384

Query: 191 SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
                K+ +      +  +    D+        L+ +   ++I+  +P L +T  E+ E 
Sbjct: 385 VKNKAKRELFPDFGEIGTL--CRDIFF---RNNLIMRACGDHIV-SAPPLVMTRAEVDEM 438

Query: 251 LDIIINTINTMAAK 264
           L +    +      
Sbjct: 439 LAVAERCLEEFEQT 452

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  183 bits (466), Expect = 4e-55
 Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 44/264 (16%)

Query: 28  VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
              LE   L+     + AF+ EP+QG  G +V  D Y  +++ +C +Y++L IADEV  G
Sbjct: 209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268

Query: 86  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGN 143
            GRTG         +RP I+ + K LS G  PI   +  DEV   +      HG TY G+
Sbjct: 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGH 328

Query: 144 PLACKLAMTALDVILEENMIENAYKMGE-IFRSELSS----------------------P 180
           P+A  +A+  L ++ EEN++++   +     + +  +                      P
Sbjct: 329 PVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTP 388

Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
              S+A F    G +                 Y    +     L+ + + + +I +SP L
Sbjct: 389 NKASRAKFASEPGTI----------------GYICRERCFANNLIMRHVGDRMI-ISPPL 431

Query: 241 NITEQELREGLDIIINTINTMAAK 264
            IT  E+ E    I  +++   A+
Sbjct: 432 VITPAEIDEMFVRIRKSLDEAQAE 455

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  182 bits (463), Expect = 9e-55
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 33/271 (12%)

Query: 13  FGPHMPGYNIIPY-------NDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYL 63
           +   +      P            A EA+L  +   + A +VEP+ QG  G    D  YL
Sbjct: 198 WTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257

Query: 64  KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
             +R +C +Y VL I DE+ TG GRTG L A  +  V PDI+ +GKAL+GG   ++A L 
Sbjct: 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLC 317

Query: 124 DDEVMGTLVPGT-----HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
             +V  T+  G      HG T+  NPLAC +++ +++++L ++      ++     + L 
Sbjct: 318 TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL- 376

Query: 179 SPANKSKASFKLSSGGLKKSINTLIL-SVSAI-----LEVYDVCIKMKDAGLVTKPISNN 232
                   + +     L    +  +  ++  I     +++        D G+  +P   N
Sbjct: 377 -------DTAR----ALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF-RN 424

Query: 233 IIRLSPALNITEQELREGLDIIINTINTMAA 263
           ++   P    T  E+ +    ++     + +
Sbjct: 425 LVYAMPPYICTPAEITQITSAMVEVARLVGS 455

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  181 bits (462), Expect = 2e-54
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 58/296 (19%)

Query: 13  FGPHMPGYNIIP----YND------------VDALEAK-LKSNP-NICAFMVEPIQGEAG 54
           F       + +      +             V   E +     P  I AF+ EPI    G
Sbjct: 176 FDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGG 235

Query: 55  AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSG 113
            ++P  GY  + +A+C ++++L+I+DEV TG GR G+  A      V PDI+   K ++ 
Sbjct: 236 VIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTS 295

Query: 114 GLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVILEENMIENA 166
           G  P+  +   + V+  +           +G TY   P+AC  A+  ++++  E +++ A
Sbjct: 296 GYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQA 355

Query: 167 YKMGEIFRSELSSPANKSKASFKLSS-------------GGL-----KKSINTLILSVSA 208
            +M + F + L+S          L               G +         +      + 
Sbjct: 356 REMADYFAAALAS----------LRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAF 405

Query: 209 ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
            L++ + C    + GL+ +P+ +  + +SP L I+  ++ E + I+   I  ++A 
Sbjct: 406 TLKIDERC---FELGLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAA 457

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  180 bits (459), Expect = 2e-54
 Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 45/284 (15%)

Query: 5   TDP-TSYNE-FGPHMPGYNIIPY-----------NDVDALEAKLKSNPN-ICAFMVEPI- 49
            DP  S +  +  ++P     P             D+      + ++ + I A ++EPI 
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIV 214

Query: 50  QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGK 109
           QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + ++ PDI+ LGK
Sbjct: 215 QGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGK 274

Query: 110 ALSGGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161
           AL+GG   +SA L   EV         G  +   HG T+ GNPLAC  A  +L ++   +
Sbjct: 275 ALTGGTMTLSATLTTREVAETISNGEAGCFM---HGPTFMGNPLACAAANASLAILESGD 331

Query: 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYD------V 215
             +    +    R +L        A  +      +   +  +L    ++E         +
Sbjct: 332 WQQQVADIEVQLREQL--------APAR----DAEMVADVRVLGAIGVVETTHPVNMAAL 379

Query: 216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259
                + G+  +P    +I L P   I  Q+L+     +   + 
Sbjct: 380 QKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  183 bits (465), Expect = 5e-53
 Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 33  AKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91
           + ++ + ++ A ++EP+  G  G  + D  + + +   C    +  I DEV TG  R G 
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646

Query: 92  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPL 145
                    +PDI    K L+GG+ P++  LA D V     G        HG +Y  + +
Sbjct: 647 ETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAM 706

Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL-----SSGG-----L 195
            C  A  A+    +     N    G+  R        +  +S          G      L
Sbjct: 707 GCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALEL 766

Query: 196 KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255
           K   +    +      +  +     + G+ T+P+ N I  L      + +  R  L  + 
Sbjct: 767 KADASNSGYASLYAKSLLIMLR---EDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLY 822

Query: 256 NTI 258
             +
Sbjct: 823 KRL 825

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  121 bits (306), Expect = 4e-32
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           +I  +D++ +     ++ + I AF+ EP+    G     D +L++   L  QY  LFI D
Sbjct: 182 LIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD 241

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV +G  +G  G        DV+PD+  L KA +GGL P   +   ++VMG L  G+   
Sbjct: 242 EVISGFRVGNHG---MQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRK 297

Query: 139 TY-----GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
                   GNP+    A+ A+D ILE+++      +G+  R  ++    +   ++     
Sbjct: 298 VLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGR 357

Query: 194 G 194
            
Sbjct: 358 F 358

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  120 bits (303), Expect = 1e-31
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 11/180 (6%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           +  YNDV+     LK + +   A +VEP+ G  G V  +  +L  +RA  S+   L I D
Sbjct: 214 LGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD 273

Query: 81  EVQTG-LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGST 139
           EV T  L   G   A     +  D+  LGK + GG+    A     ++M    P   G+ 
Sbjct: 274 EVMTSRLSGGG---AQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAF 329

Query: 140 Y--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG 194
              G    N L       AL  I       +    G+ FR+ L+  A +++A  + +  G
Sbjct: 330 AHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLG 389

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  112 bits (283), Expect = 7e-29
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           + PYNDV+ALE       + I   +VEP+   AG + P   +L  ++ L  +   L I D
Sbjct: 184 VTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD 243

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV TG  LG  G   A  Y ++  DI++LGK + GG  P+ AV    EVM  L P   G 
Sbjct: 244 EVVTGFRLGLEG---AQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQ--GK 297

Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
            +  G    +P+     +  L  + EE +   + +  +      S   +++   + ++  
Sbjct: 298 VFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRV 357

Query: 194 G 194
            
Sbjct: 358 E 358

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  111 bits (281), Expect = 1e-28
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
            +P+N+V+ L+  L    + + A +VEPI G  G V P  G+L+KV  L  +   L I D
Sbjct: 183 TVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV T       G   A     V PD+  LGK + GGL PI A     E+M  + P   G 
Sbjct: 243 EVITAFRFMYGG---AQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPL--GP 296

Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
            Y  G   GNP +    +  L+V+ +E + E   ++G      +   A K      L+  
Sbjct: 297 AYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRL 356

Query: 194 G 194
            
Sbjct: 357 K 357

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  110 bits (278), Expect = 3e-28
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 14/181 (7%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
             PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + D
Sbjct: 180 TTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD 239

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV TG  +   G         V PD+  LGK + GGL P+ A     E+M  + P   G 
Sbjct: 240 EVITGFRIAYGG---VQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPA--GP 293

Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
            Y  G   GNPLA    +  L+++ +    E   ++ +     L + A ++  +      
Sbjct: 294 MYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQV 353

Query: 194 G 194
            
Sbjct: 354 S 354

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  109 bits (276), Expect = 5e-28
 Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
              YND+ ++    +  P  +   +VEP+ G    + P   +L  +RALC ++  L I D
Sbjct: 181 TCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID 240

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV TG  +   G   A  Y  V PD+  LGK + GG+ P+ A     EVM  L P   G 
Sbjct: 241 EVMTGFRVALAG---AQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPT--GP 294

Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
            Y  G   GNP+A       L  I +  + E   ++ +   + L   A +      ++  
Sbjct: 295 VYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHV 354

Query: 194 G 194
           G
Sbjct: 355 G 355

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  106 bits (268), Expect = 8e-27
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 15/181 (8%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
            + YND+++++   +   + I   +VEP+ G  G V P  G+L+ +R +  Q   L I D
Sbjct: 181 TVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD 240

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV TG  +          Y  V PD+  LGK + GGL P+ A     E+M  + P   G 
Sbjct: 241 EVMTGFRVAYNC---GQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPS--GP 294

Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
            Y  G   GNPLA       L   L         +  E+  + L   A K      ++  
Sbjct: 295 IYQAGTLSGNPLAMAAGYETLV-QLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA 353

Query: 194 G 194
           G
Sbjct: 354 G 354

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  100 bits (251), Expect = 2e-24
 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 22  IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
           ++ YND + L   LK     I A + EP+ G AG +VP + +LK +      Y VL IAD
Sbjct: 180 VLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIAD 238

Query: 81  EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
           EV TG  L   G   A     ++PD+V LGK L GGL P +A     E+M  + P   G 
Sbjct: 239 EVMTGFRLAFGG---ATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPL--GP 292

Query: 139 TY--G---GNPLACKLAMTALDVILEE 160
            Y  G   GNPLA    +  L+++ E 
Sbjct: 293 VYQAGTLSGNPLAMAAGLATLELLEEN 319

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 31/121 (25%)

Query: 26  NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNVLF 77
           NDV  L   L S                  VV +     DG    L +++ +  Q+N   
Sbjct: 153 NDVTHLARLLASP-----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 201

Query: 78  IADEVQ-TG-LGRTGKLLAIHYEDVRPDIVI--LGKAL--SGGLYPISAVLADDEVMGTL 131
           + D+   TG +G  G+      + V+P++++   GK    SG      AVL    V   L
Sbjct: 202 MVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFGVSGA-----AVLCSSTVADYL 255

Query: 132 V 132
           +
Sbjct: 256 L 256

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 27  DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
           DV A++A L ++P I    +  +  E   G + P    + +V AL  +Y   +I D + +
Sbjct: 118 DVQAIDAILNADPTISHIAM--VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAM-S 170

Query: 85  GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
             G  G  + +    +  D +I    K + G  G   + A
Sbjct: 171 SFG--G--IPMDIAALHIDYLISSANKCIQGVPGFAFVIA 206

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 21/172 (12%)

Query: 27  DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
           D+  L+  +  +   NI A +       AG        LK+V  +  Q+ +  + D  + 
Sbjct: 168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 227

Query: 85  G------LGRTGKLLAIHYEDVRPDIVILGKALS-----GGLYPISAVLA--DDEVMGT- 130
                    R  K      ++V  D+     AL+       L  I  ++A  D+E + T 
Sbjct: 228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTL 287

Query: 131 ----LVPGTHGSTYGGNPLACKLAMTA-LDVILEENMIENAYKMGEIFRSEL 177
                VP     TYGG       AM   L+   EE  +       +     L
Sbjct: 288 ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 339

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 34/176 (19%)

Query: 24  PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNV 75
             ND+  LEA+LK                   +  D     DG    LK V  L  +Y+ 
Sbjct: 157 ANNDMQELEARLKEAR--------EAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDA 208

Query: 76  LFIADEVQ-TG-LGRTGKLLAIHYE-DVRPDIVI--LGKALSG--GLYPISAVLADDEVM 128
           L + D+    G +G  G+    + +   R DI+   LGKAL G  G Y      A  EV+
Sbjct: 209 LVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGY----TAARKEVV 264

Query: 129 GTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSELSS 179
             L        Y       P     ++  L+++   + + +  +     FR ++S+
Sbjct: 265 EWLR--QRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSA 318

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 27  DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
           D  A+   LK++P I    V     +  +G + P    +  + AL S +    I D V +
Sbjct: 121 DPQAVADMLKAHPEITVVSV--CHHDTPSGTINP----IDAIGALVSAHGAYLIVDAV-S 173

Query: 85  GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPIS 119
             G        H ED + DI + G  K L    GL  + 
Sbjct: 174 SFGGM----KTHPEDCKADIYVTGPNKCLGAPPGLTMMG 208

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 56/278 (20%)

Query: 27  DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADE---- 81
           DVDA+E    ++P++   +  P      G  +  +   +      +  +    AD+    
Sbjct: 159 DVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218

Query: 82  ---VQTGLGRTGKLLAIHYEDVRPDIVI-LG---KALSGGLYPISAVLADDEVMGTLVPG 134
              V+         + +  +   PD         K    G   +  V + ++ +  L   
Sbjct: 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAG-LGFVASSEDNIRWLSKY 277

Query: 135 THGSTYGGNPL---ACKLAMTALDVILEENM--IENAYK-----MGEIFRSELSSPANKS 184
               + G N +        +T     LE  M             + E+ R+EL       
Sbjct: 278 LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAEL--GEGGE 335

Query: 185 KASFKLSSGG------LKKSINTLILSVSAILEVYDVCIKMKDAGLV-----------TK 227
            A++ L  GG        + +   ++               + AG+              
Sbjct: 336 YATWTLPKGGYFISLDTAEPVADRVVK------------LAEAAGVSLTPAGATYPAGQD 383

Query: 228 PISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
           P + N +RL+P      +E+R  + ++   I     + 
Sbjct: 384 PHNRN-LRLAPT-RPPVEEVRTAMQVVAACIRLATEEY 419

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 37/178 (20%)

Query: 24  PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNV 75
             N +  LEAKLK                   +  D     DG    LK +  L  +YN 
Sbjct: 155 KNNAMGDLEAKLKEAD--------EKGARFKLIATDGVFSMDGIIADLKSICDLADKYNA 206

Query: 76  LFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKALSG--GLYPISAVLADDEV 127
           L + D+    G +G  G+    +    D R DI+   LGKAL G  G Y         E+
Sbjct: 207 LVMVDDSHAVGFIGENGRGTPEYCGVAD-RVDILTGTLGKALGGASGGY----TSGHKEI 261

Query: 128 MGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN--MIENAYKMGEIFRSELSS 179
           +  L        Y       P+    ++  L+++  E   + +   +    FR+ +  
Sbjct: 262 IEWLR--NRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK 317

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 27  DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
             + L+  L+ NP++ A  +     E   G + P    L ++  +  +++ L   D V +
Sbjct: 133 KPEDLDDALRKNPDVEAVTI--TYNETSTGVLNP----LPELAKVAKEHDKLVFVDAV-S 185

Query: 85  GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
            +G       I ++    D+V     KA     GL   + 
Sbjct: 186 AMGGA----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAF 221

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 31/107 (28%)

Query: 26  NDVDALEAKLKSNPNICAFMVEPIQGEAGA--VVPD-----DGY---LKKVRALCSQYNV 75
           N V+ L+ +L   P            +  A  VV +      G    LK++ A+  ++  
Sbjct: 178 NSVEDLDKRLGRLP------------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225

Query: 76  LFIADEV-QTG-LGRTGKLLAIHYEDV--RPDIVI--LGKAL--SGG 114
           + + DE    G  G  G+ +    + +  + D V+    K++   GG
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVY-EAQGLEGQIDFVVGTFSKSVGTVGG 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.95
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.95
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.95
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.94
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.94
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.94
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.94
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.94
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.93
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.93
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.93
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.93
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.93
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.93
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.93
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.93
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.93
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.93
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.93
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.93
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.93
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.93
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.93
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.93
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.93
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.93
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.93
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.92
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.92
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.92
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.92
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.92
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.92
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.92
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.92
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.92
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.92
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.92
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.92
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.92
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.92
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.92
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.92
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.92
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.92
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.92
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.92
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.92
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.91
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.91
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.91
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.91
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.91
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.91
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.91
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.91
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.91
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.91
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.91
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.91
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.9
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.9
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.9
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.9
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.9
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.9
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.9
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.9
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.9
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.89
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.89
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.89
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.82
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.89
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.89
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.89
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.88
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.88
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.88
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.88
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.88
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.88
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.87
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.87
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.87
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.87
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.87
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.87
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.87
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.87
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.87
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.87
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.87
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.87
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.86
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.86
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.86
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.85
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.85
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.85
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.85
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.85
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.85
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.85
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.85
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.84
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.84
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.84
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.84
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.83
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.83
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.82
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.82
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.82
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.82
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.82
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.81
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.81
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.81
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.81
1svv_A	359	Threonine aldolase; structural genomics, structura	99.81
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.81
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.8
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.79
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.79
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.79
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.78
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.78
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.78
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.78
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.78
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.78
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.77
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.77
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.77
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.77
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.77
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.77
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.77
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.77
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.76
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.76
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.76
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.76
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.76
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.76
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.75
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.75
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.75
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.75
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.75
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.75
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.74
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.74
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.73
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.72
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.72
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.72
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.71
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.7
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.7
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.68
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.67
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.67
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.67
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.66
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.66
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.66
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.66
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.65
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.65
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.64
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.63
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.62
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.58
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.58
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.54
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.53
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.52
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.52
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.51
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.51
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.43
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.41
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.41
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.32
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.05

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=4.2e-39  Score=284.36  Aligned_cols=254  Identities=30%  Similarity=0.548  Sum_probs=218.5

Q ss_pred             ccCCcC-cccccCCCCCCceeecCCC-----------HHHHHHHHhc------CCCEEEEEEccccCCCCcccCChHHHH
Q psy6547           3 ITTDPT-SYNEFGPHMPGYNIIPYND-----------VDALEAKLKS------NPNICAFMVEPIQGEAGAVVPDDGYLK   64 (266)
Q Consensus         3 ~~~~~~-~~~~~~~~~~~v~~~~~~d-----------~~~l~~~l~~------~~~~~~i~~~~~~~~~g~~~~~~~~l~   64 (266)
                      .++++. ....|.|+.+++..+|++.           .+.+++.++.      ..++++|++||+++.+|.+.+++++++
T Consensus       171 ~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~  250 (456)
T 4atq_A          171 LTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLP  250 (456)
T ss_dssp             HCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHH
T ss_pred             cccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhH
Confidence            344443 4566889999999998752           3444443321      237999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcH
Q psy6547          65 KVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNP  144 (266)
Q Consensus        65 ~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  144 (266)
                      +|+++|++||+++|+||+++||+|+|..|+++.+|+.||+++++|+++|| +|+|.+++++++++.+.+..+++||++||
T Consensus       251 ~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~~~~~~~Tf~gnp  329 (456)
T 4atq_A          251 ALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHPGGLGGTYGGNP  329 (456)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCTTSSCCSSSSCH
T ss_pred             HHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhcccccCCCCCCCCCh
Confidence            99999999999999999999999999999999999999999999999999 89999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc------CCCcccEEecCccceeeEEEEeeCc-----cchHH
Q psy6547         145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK------SKASFKLSSGGLKKSINTLILSVSA-----ILEVY  213 (266)
Q Consensus       145 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~  213 (266)
                      +++++++++|+.++++++.+++++..++++++|++....      +.+.. +++.|+   |+.+++.++.     .....
T Consensus       330 la~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~-VRG~Gl---~~giel~~~~~~~~~~~~~~  405 (456)
T 4atq_A          330 VACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGD-IRGRGA---MLAIELVQPGSKEPNAELTK  405 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEE-EEEETT---EEEEEEBCTTSCCBCHHHHH
T ss_pred             HHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEE-eeecce---EEEEEEecCCCCCcCHHHHH
Confidence            999999999999999999999999999999999883221      23455 899999   9999986532     12356


Q ss_pred             HHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         214 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       214 ~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++++|+++|+++.+.+  ++.|||+|++.+|++++++++++|+++++..
T Consensus       406 ~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          406 AVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             HHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            78999999999998653  5899999999999999999999999998753

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=4.6e-39  Score=285.13  Aligned_cols=256  Identities=26%  Similarity=0.497  Sum_probs=222.4

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      |.++++ .++.|.+..+++++++.++                  .+++++.+.+ . +++++|++||+++.+|++.++++
T Consensus       179 s~tg~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~  257 (473)
T 4e3q_A          179 SMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKG  257 (473)
T ss_dssp             HHSCCG-GGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTT
T ss_pred             cccccc-cccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHH
Confidence            344544 5677888889999988763                  3456666654 2 37999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc-------CCC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-------VPG  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~-------~~~  134 (266)
                      ++++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+       ...
T Consensus       258 fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~  337 (473)
T 4e3q_A          258 YFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEF  337 (473)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhcccccccccc
Confidence            9999999999999999999999999999999999999999999999999998878999999999998765       345


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----
Q psy6547         135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----  208 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----  208 (266)
                      .|++||++||+++++++++|+.++++++.+++++..++++++|++ +.. +.+.. +++.|+   |+.+++..+.     
T Consensus       338 ~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~-vRG~Gl---~~gielv~~~~~~~~  412 (473)
T 4e3q_A          338 PHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKH-IAERPNIGE-YRGIGF---MWALEAVKDKASKTP  412 (473)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH-HTTSTTEEE-EEEETT---EEEEEECSBTTTTBC
T ss_pred             ccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHH-HhcCCCeeE-Eeecce---EEEEEEecCcccccc
Confidence            799999999999999999999999999999999999999999999 544 55655 999999   9999985421     


Q ss_pred             ----cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         209 ----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       209 ----~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                          ......+++.++++|+++++. ++.+|++|++.+|++++|+++++|+++++++..+
T Consensus       413 ~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae  471 (473)
T 4e3q_A          413 FDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE  471 (473)
T ss_dssp             CCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                123567999999999999987 4799999999999999999999999999987654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=3.8e-38  Score=281.29  Aligned_cols=257  Identities=25%  Similarity=0.497  Sum_probs=223.2

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC----------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND----------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDGYL   63 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d----------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~~l   63 (266)
                      ++++.+..+..|.|...++..++++.                +++|++++++ . +++++|++||+++++|.++++++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L  244 (476)
T 3i5t_A          165 ACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYH  244 (476)
T ss_dssp             HTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHH
T ss_pred             cccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHH
Confidence            35667777778899999998888543                8899999964 2 4799999999999999988999999


Q ss_pred             HHHHHHHHhcCCEEEEeccccCcCCcCcccccc-cCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-------C
Q psy6547          64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------T  135 (266)
Q Consensus        64 ~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~-~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-------~  135 (266)
                      ++|+++|++||++||+||+|+||+++|..++.+ .+++.||++++||++++|++|+|++++++++++.+...       .
T Consensus       245 ~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~  324 (476)
T 3i5t_A          245 ARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFT  324 (476)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEEC
T ss_pred             HHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCccccccc
Confidence            999999999999999999999999999877888 88999999999999999867999999999999888753       6


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-----  209 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----  209 (266)
                      +..++++++++++++.++|+.++.+++.++++++.+++++.|++ +.. +.+.. .++.|.   |+++++.....     
T Consensus       325 ~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~~-v~~~G~---~~~i~~~~~~~~~~~~  399 (476)
T 3i5t_A          325 NGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALAS-LRDLPGVAE-TRSVGL---VGCVQCLLDPTRADGT  399 (476)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT-TTTSTTEEE-EEEETT---EEEEEECCC-----CC
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EEecCc---eeEEEEecCccccccc
Confidence            77899999999999999999998889999999999999999997 653 34444 788999   99999875210     


Q ss_pred             ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                          ....++++.|+++||++++.+ +++|++|++.+|++++++++++|+++++++..+
T Consensus       400 ~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          400 AEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                025678999999999999975 999999999999999999999999999887543

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=7.2e-38  Score=276.47  Aligned_cols=247  Identities=49%  Similarity=0.912  Sum_probs=210.4

Q ss_pred             cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547           9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ....|.|...+++.+|++|+++|+++++ .+++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++
T Consensus       182 ~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~  260 (433)
T 1z7d_A          182 CTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR  260 (433)
T ss_dssp             ----------CEEEECTTCHHHHHHHHT-STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             ccccCCCCCCCeEEeCCCCHHHHHHHhC-CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCc
Confidence            3344667778999999999999999995 347999999999999998889999999999999999999999999999998


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                      .|..++++.+++.||++++||++++|++|+|++++++++++.+....+..++++++++++++.++|+.++.+++.+++++
T Consensus       261 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          261 TGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             TSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            88877777788999999999999988569999999999998888767888999999999999999999887889999999


Q ss_pred             HHHHHHHHhhccc--ccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547         169 MGEIFRSELSSPA--NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  246 (266)
Q Consensus       169 ~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~  246 (266)
                      ++++++++|++ +  +.+.+.. .++.|.   ++++.++.. ..+..+++++|+++||++.+.+.+++|+++++.+|+++
T Consensus       341 ~~~~l~~~L~~-l~~~~~~~~~-~~~~g~---~~~i~~~~~-~~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~  414 (433)
T 1z7d_A          341 LGGPFLENLKR-ELKDSKIVRD-VRGKGL---LCAIEFKNE-LVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQ  414 (433)
T ss_dssp             HHHHHHHHHHH-HHTTCTTEEE-EEEETT---EEEEEECTT-TCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHHH-HHHhCCCeEE-EEeeee---EEEEEEccC-hhHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHH
Confidence            99999999988 5  2233333 677888   999998751 13578899999999999999878999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy6547         247 LREGLDIIINTINTMA  262 (266)
Q Consensus       247 i~~~~~~l~~~~~~~~  262 (266)
                      +++++++|+++++++.
T Consensus       415 i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          415 LDECTEIIVKTVKFFD  430 (433)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988753

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=8.1e-38  Score=276.60  Aligned_cols=246  Identities=57%  Similarity=1.006  Sum_probs=216.6

Q ss_pred             cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547           9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ....|.|+..+++.++++|+++|+++++ .+++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+||++
T Consensus       193 ~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~  271 (439)
T 2oat_A          193 SYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR  271 (439)
T ss_dssp             HHTTSCSCCTTEEEECSSCHHHHHHHTT-STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             cccCCCCCCCCeEEeCCCCHHHHHHHhC-CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcc
Confidence            3455778888999999999999999995 347999999999999998889999999999999999999999999999998


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                      +|..+.++.+++.||++++||++++|++|+|++++++++++.+....+..++++++++++++.++|+.++.+++.+++++
T Consensus       272 ~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  351 (439)
T 2oat_A          272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK  351 (439)
T ss_dssp             TSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            88877778888999999999999987579999999999998888777888999999999999999999888889999999


Q ss_pred             HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHH
Q psy6547         169 MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR  248 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~  248 (266)
                      +++++++.|++ ++.+.+.. .++.|.   ++++.++...+.+..+++++|+++||.+.+.+.+++|+++++.+|+++++
T Consensus       352 ~~~~l~~~L~~-l~~~~~~~-~~~~g~---~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~  426 (439)
T 2oat_A          352 LGIILRNELMK-LPSDVVTA-VRGKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELR  426 (439)
T ss_dssp             HHHHHHHHHTT-SCTTTEEE-EEEETT---EEEEEECCCSSCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHH
T ss_pred             HHHHHHHHHHH-hcCCCcEE-EEeeee---EEEEEEecCccHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHH
Confidence            99999999998 54333333 667888   99999876211357889999999999999987899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6547         249 EGLDIIINTINT  260 (266)
Q Consensus       249 ~~~~~l~~~~~~  260 (266)
                      +++++|++++++
T Consensus       427 ~~l~~l~~~l~~  438 (439)
T 2oat_A          427 ESIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=7.5e-38  Score=279.02  Aligned_cols=253  Identities=25%  Similarity=0.437  Sum_probs=216.2

Q ss_pred             ccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHH
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYL   63 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l   63 (266)
                      +++.+..+..|. ..++++.++.+.                 +++|++++++.  +++++|++||+++++|.+.++++++
T Consensus       168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l  246 (472)
T 3hmu_A          168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW  246 (472)
T ss_dssp             HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred             ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence            344555556677 677888887543                 78999998642  4799999999999999998999999


Q ss_pred             HHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC--CCCCCCCC
Q psy6547          64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP--GTHGSTYG  141 (266)
Q Consensus        64 ~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~--~~~~~~~~  141 (266)
                      ++|+++|++||+++|+||+|+||+++|..++.+.+++.||++++||++++|++|+|++++++++++.+..  ..+..+++
T Consensus       247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~  326 (472)
T 3hmu_A          247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS  326 (472)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred             HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence            9999999999999999999999999998778888899999999999999764799999999999988842  36788999


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----------
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----------  209 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----------  209 (266)
                      +++++++++.++|+.++.+++.++++ ++.+++++.|++ +.. +.+.. +++.|+   |+++.+.....          
T Consensus       327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~~-vr~~G~---~~~i~~~~~~~~~~~~~~~~~  401 (472)
T 3hmu_A          327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEA-LTDHPLVGE-AKIVGM---MASIALTPNKASRAKFASEPG  401 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHG-GGGSTTEEE-EEEETT---EEEEEECSCGGGTCCBSSCTT
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EEecCc---eEEEEEecCccccccccchhH
Confidence            99999999999999998888999999 999999999988 543 34444 788999   99999874210          


Q ss_pred             chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ....++++.|+++||++++.+ +++|++|++.+|++++++++++|+++++++.
T Consensus       402 ~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~  453 (472)
T 3hmu_A          402 TIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ  453 (472)
T ss_dssp             HHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            116788999999999999986 9999999999999999999999999987764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=1.3e-37  Score=276.45  Aligned_cols=249  Identities=27%  Similarity=0.456  Sum_probs=212.3

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      ++.....|.|+..++..++.       +|+++|+++++++ +++++|++|| +++++|.+.++++++++|+++|++||++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gil  270 (457)
T 3tfu_A          191 HGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVL  270 (457)
T ss_dssp             C----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCE
T ss_pred             cccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence            45556678888888888886       4899999999643 4799999999 8999999988999999999999999999


Q ss_pred             EEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC---CC--CCCCCCCCcHHHHHHHH
Q psy6547          77 FIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV---PG--THGSTYGGNPLACKLAM  151 (266)
Q Consensus        77 li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~a~~  151 (266)
                      +|+||+|+||+++|..++.+.+++.||+++|||+++||++|+|++++++++++.+.   ..  .+..++++++++++++.
T Consensus       271 lI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~  350 (457)
T 3tfu_A          271 LIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSV  350 (457)
T ss_dssp             EEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHH
T ss_pred             EEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHH
Confidence            99999999999999888888889999999999999998569999999999988873   32  67899999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC
Q psy6547         152 TALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS  230 (266)
Q Consensus       152 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  230 (266)
                      ++|+.++.+++.+++++++++++++|++ +.. +.+.. .++.|+   |+++.+.+  ..++.++++.|+++||++++. 
T Consensus       351 aaL~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~~-vr~~G~---~~~i~l~~--~~~~~~~~~~l~~~Gv~v~~~-  422 (457)
T 3tfu_A          351 ASVELLLGQDWRTRITELAAGLTAGLDT-ARALPAVTD-VRVCGA---IGVIECDR--PVDLAVATPAALDRGVWLRPF-  422 (457)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHHHGG-GGGSTTEEE-EEECSS---CEEEEESS--CCCHHHHHHHHHHTTEECCCB-
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhcCCCeee-eecCCe---EEEEEECC--cccHHHHHHHHHHCCeEEEec-
Confidence            9999998889999999999999999998 543 44444 788899   99999976  446789999999999999987 


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++++|+++++.+|++++++++++|+++++++.
T Consensus       423 ~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          423 RNLVYAMPPYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999998753

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=4.5e-37  Score=272.54  Aligned_cols=257  Identities=30%  Similarity=0.518  Sum_probs=209.6

Q ss_pred             CccCCcCcccccCCCCCCceeecCCC----------------HHHHHHHHhcC-CCEEEEEEcccc-CCCCcccCChHHH
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYND----------------VDALEAKLKSN-PNICAFMVEPIQ-GEAGAVVPDDGYL   63 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d----------------~~~l~~~l~~~-~~~~~i~~~~~~-~~~g~~~~~~~~l   63 (266)
                      ++++.+.....|.|..+++..+++++                +++|+++++++ +++++|++||++ +++|.+.++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l  234 (448)
T 3dod_A          155 SVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYL  234 (448)
T ss_dssp             ------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHH
T ss_pred             HhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHH
Confidence            34556666677888888999998876                89999999642 378999999998 9999998999999


Q ss_pred             HHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------CCC
Q psy6547          64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GTH  136 (266)
Q Consensus        64 ~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~~~  136 (266)
                      ++|+++|++||++||+||+|+||+++|..++...+++.||++++||++++|++|+|++++++++++.+..       ..+
T Consensus       235 ~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~  314 (448)
T 3dod_A          235 AGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFH  314 (448)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCC
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccc
Confidence            9999999999999999999999999998878888899999999999999993399999999999998876       567


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccc-----
Q psy6547         137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAIL-----  210 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~-----  210 (266)
                      ..++++++++++++.++|+.++.+++.++++++.+++++.|++ +.. +.+.. .++.|.   ++++.+......     
T Consensus       315 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~  389 (448)
T 3dod_A          315 GHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGD-IRQLGF---MCGAELVRSKETKEPYP  389 (448)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEE-EEEETT---EEEEEECSBTTTTBCCC
T ss_pred             cCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EEeeeE---EEEEEEccCcccccccc
Confidence            8999999999999999999988888999999999999999988 654 33444 678899   999998762100     


Q ss_pred             ----hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         211 ----EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       211 ----~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                          .+.++++.|+++||.+.|.+ +++|++|++.+|++++++++++|+++++++.+.
T Consensus       390 ~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  446 (448)
T 3dod_A          390 ADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL  446 (448)
T ss_dssp             GGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence                14789999999999999984 999999999999999999999999999887643

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=5.1e-37  Score=273.03  Aligned_cols=257  Identities=26%  Similarity=0.433  Sum_probs=219.7

Q ss_pred             ccCCcCcccccCCCCCCceeecCC------C------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChHH
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYN------D------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDGY   62 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~------d------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~~   62 (266)
                      +++.+.....|.|...++..++.+      |            +++|++++++ . +++++|++||+++++|.+.+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~  243 (460)
T 3gju_A          164 LTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGY  243 (460)
T ss_dssp             HCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTH
T ss_pred             ccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHH
Confidence            355666677788888899888743      3            6899999864 2 479999999999999998899999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc-------CCCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-------VPGT  135 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~-------~~~~  135 (266)
                      +++|+++|++||++||+||+|++|+++|..+..+.+++.||++++||++++|++|+|++++++++++.+       ....
T Consensus       244 l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~  323 (460)
T 3gju_A          244 WEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLG  323 (460)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccc
Confidence            999999999999999999999999999987777888999999999999998856999999999998888       4456


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------
Q psy6547         136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------  208 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------  208 (266)
                      +..++++++++++++.++|+.++.+++.++++++.++++++|.+.+.. +.+.. +++.|.   |+++.+....      
T Consensus       324 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~  399 (460)
T 3gju_A          324 HGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGE-VRGDGM---LAAVEFVADKDDRVFF  399 (460)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEE-EEEETT---EEEEEECSBTTTTBCC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EeeeeE---EEEEEEccCccccccc
Confidence            889999999999999999999888889999999999999999663443 33444 788899   9999987521      


Q ss_pred             ---cchHHHHHHHHHHCCceeccCC-CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 ---ILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 ---~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         .....++++.|+++||++++.+ .+++|++|++.+|++++++++++|+++++++..
T Consensus       400 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          400 DASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             CGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence               1126689999999999999874 489999999999999999999999999988653

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=3.8e-37  Score=268.47  Aligned_cols=248  Identities=29%  Similarity=0.532  Sum_probs=220.1

Q ss_pred             cCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ++++.....+.|...++..++++|+++|++++  .+++++|+++|+++++|.+.++++++++|+++|++||+++|+||+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~  222 (395)
T 3nx3_A          145 TANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQ  222 (395)
T ss_dssp             CCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC--CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             cCCcccccccCCCCCCcEEeCCCCHHHHHHhc--cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence            44455566778889999999999999999999  4579999999999999999999999999999999999999999999


Q ss_pred             cCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      ++|++.|..+..+.+++.+|+.++||++++| +|+|++++++++ .+.+....+..++++++++++++.++++.++.+++
T Consensus       223 ~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~  301 (395)
T 3nx3_A          223 CGMGRSGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKI  301 (395)
T ss_dssp             TTTTTTSSSSGGGGGTCCCSEEEECGGGTTT-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTH
T ss_pred             cCCCcCCcchhHHhcCCCCCEEEecccccCC-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence            9999888877778889999999999999999 899999999998 88888777889999999999999999998877889


Q ss_pred             HHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         163 IENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      .++++++.+++++.|++.... +.+.. .++.|.   ++++.++.  ..+..++++.|+++||.+++++.+++|+++++.
T Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~  375 (395)
T 3nx3_A          302 LENVNKLTPYLEQSLDELINEFDFCKK-RKGLGF---MQGLSLDK--SVKVAKVIQKCQENALLLISCGENDLRFLPPLI  375 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETT---EEEEEECT--TSCHHHHHHHHHHTTEECEEETTTEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEE-EEeEEE---EEEEEeCC--cchHHHHHHHHHHCCCEEecCCCCEEEEECCCC
Confidence            999999999999999873322 33333 677888   99999876  446788999999999999998889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINT  260 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|++++++++++|++++++
T Consensus       376 ~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          376 LQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999998864

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=6.4e-37  Score=271.86  Aligned_cols=255  Identities=33%  Similarity=0.544  Sum_probs=218.0

Q ss_pred             cCCc-CcccccCCCCCCceeecCC----C-------------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHH
Q psy6547           4 TTDP-TSYNEFGPHMPGYNIIPYN----D-------------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK   65 (266)
Q Consensus         4 ~~~~-~~~~~~~~~~~~v~~~~~~----d-------------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~   65 (266)
                      ++++ .....|.|+..++..++++    |             +++|++.+. ..++++|++||+++++|.+.++++++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~-~~~~aavi~ep~~~~gG~~~~~~~~l~~  250 (453)
T 4ffc_A          172 TAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG-AQSLAAIIIEPIQGEGGFIVPAPGFLAT  250 (453)
T ss_dssp             CCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC-GGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred             cCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC-CCCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence            3443 5666788999999999887    4             355555552 2378999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547          66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL  145 (266)
Q Consensus        66 l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (266)
                      |+++|++||++||+||+|++|++.|..++.+.+++.||+++|||++++| +|+||+++++++++.+....+..+++++++
T Consensus       251 l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~  329 (453)
T 4ffc_A          251 LTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAGGLGGTYGGNPV  329 (453)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred             HHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCC-cCeEEEEECHHHHhhhcccCcCCCCCcCHH
Confidence            9999999999999999999999999877888889999999999999999 999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEee-----CccchHHHHHHHH
Q psy6547         146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSV-----SAILEVYDVCIKM  219 (266)
Q Consensus       146 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~l  219 (266)
                      +++++.++|+.++.+++.++++++++++++.|++.... +.+.. +++.|.   |+++.+..     .+.....++++.|
T Consensus       330 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l  405 (453)
T 4ffc_A          330 TCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGE-VRGRGA---MLAIEIVKPGTLEPDAALTKSIAAEA  405 (453)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEE-EEEETT---EEEEEEBCTTSCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE-EEeece---EEEEEEecCcccCCCHHHHHHHHHHH
Confidence            99999999999888889999999999999999883333 33444 778899   99999853     1134577899999


Q ss_pred             HHCCceeccCCC--CEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         220 KDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       220 ~~~gi~~~~~~~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +++||++.+++.  +++|+++++.++++++++++++|+++++++.++
T Consensus       406 ~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (453)
T 4ffc_A          406 LSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASH  452 (453)
T ss_dssp             HHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998754  899999999999999999999999999887654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=1.4e-36  Score=269.58  Aligned_cols=252  Identities=31%  Similarity=0.568  Sum_probs=216.5

Q ss_pred             cCCc-CcccccCCCCCCceeecCC------------------CHHHHHHHHhc--C-CCEEEEEEccccCCCCcccCChH
Q psy6547           4 TTDP-TSYNEFGPHMPGYNIIPYN------------------DVDALEAKLKS--N-PNICAFMVEPIQGEAGAVVPDDG   61 (266)
Q Consensus         4 ~~~~-~~~~~~~~~~~~v~~~~~~------------------d~~~l~~~l~~--~-~~~~~i~~~~~~~~~g~~~~~~~   61 (266)
                      ++++ .....|.|+..++..++++                  +++.+++.+++  + +++++|++||+++++|.+.++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~  248 (451)
T 3oks_A          169 TAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADG  248 (451)
T ss_dssp             CCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTT
T ss_pred             cCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHH
Confidence            3443 5667789999999999987                  24444455543  2 37999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCC
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG  141 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~  141 (266)
                      ++++|+++|++||++||+||+|++|++.|..++.+.+++.||++++||++++| +|+||+++++++++.+....+..+++
T Consensus       249 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~~~~~~~t~~  327 (451)
T 3oks_A          249 FLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVSGLGGTYG  327 (451)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSCTTSBCCSSS
T ss_pred             HHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCC-cceEEEEECHHHHhhhcCCCcCCCCC
Confidence            99999999999999999999999999999888888889999999999999999 99999999999999998878999999


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEee-----CccchHHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSV-----SAILEVYDV  215 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~  215 (266)
                      +++++++++.++|+.++.+++.++++++++++++.|++.... +.+.. +++.|.   |+++.+..     .+..+..++
T Consensus       328 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~G~---~~~~~~~~~~~~~~~~~~~~~~  403 (451)
T 3oks_A          328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGD-VRGRGA---MIAMELVKAGTTEPDADLTKAL  403 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETT---EEEEEEBSTTSCCBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE-EEEeeE---EEEEEEecCccCCCCHHHHHHH
Confidence            999999999999999888889999999999999999983333 33444 788899   99999843     113457789


Q ss_pred             HHHHHHCCceeccCCC--CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++.|+++||++.+++.  +++|+++++.+|++++++++++|++++++
T Consensus       404 ~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          404 CAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             HHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999998654  89999999999999999999999998864

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=5.4e-37  Score=272.80  Aligned_cols=255  Identities=24%  Similarity=0.378  Sum_probs=216.3

Q ss_pred             ccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHH
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYL   63 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l   63 (266)
                      +++.+..+..|.|...++..++.+.                 +++|++++++.  +++++|++||+++++|.+.++++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l  242 (459)
T 4a6r_A          163 LGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYW  242 (459)
T ss_dssp             HSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHH
T ss_pred             hcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHH
Confidence            4556666677888888998888543                 78999999641  3789999999999999998999999


Q ss_pred             HHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC---CCCCCCCC
Q psy6547          64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV---PGTHGSTY  140 (266)
Q Consensus        64 ~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~---~~~~~~~~  140 (266)
                      ++|+++|++||+++|+||+|+||++.|..++.+.+++.||++++||++++|++|+|++++++++++.+.   ...+..++
T Consensus       243 ~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~  322 (459)
T 4a6r_A          243 PEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTY  322 (459)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCC
Confidence            999999999999999999999999999877778889999999999999976479999999999988876   55677899


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHh-hccccc-CCCcccEEecCccceeeEEEEeeCc---------
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSEL-SSPANK-SKASFKLSSGGLKKSINTLILSVSA---------  208 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l-~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---------  208 (266)
                      ++++++++++.++|+.++.+++.++++ ++.+++++.| +. +.. +.+.. .++.|+   |+++.+....         
T Consensus       323 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~  397 (459)
T 4a6r_A          323 SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRET-FSRFEHVDD-VRGVGM---VQAFTLVKNKAKRELFPDF  397 (459)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHH-HTTCTTEEE-EEEETT---EEEEEECSBTTTTBCCSST
T ss_pred             CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EEEEEE---EEEEEEecCccccccccch
Confidence            999999999999999988888999999 9999999999 55 543 33444 788999   9999987521         


Q ss_pred             cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         209 ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      .....++++.|+++||++++.+ +++|++|++.+|++++++++++|+++++++..
T Consensus       398 ~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          398 GEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             THHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1126789999999999999985 99999999999999999999999999887643

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=1.3e-36  Score=267.53  Aligned_cols=245  Identities=33%  Similarity=0.573  Sum_probs=210.4

Q ss_pred             ccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ...|.|+..+++.++++|+++|+++++  +++++|+++|+++++|.+.++.+++++|+++|++||+++|+||+|+||++.
T Consensus       173 ~~~~~p~~~~~~~~~~~d~~~le~~i~--~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~  250 (420)
T 2pb2_A          173 SDGFGPKPADIIHVPFNDLHAVKAVMD--DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT  250 (420)
T ss_dssp             HTTSSSCCSCEEEECTTCHHHHHHHCC--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred             cccCCCCCCCeEEecCCCHHHHHHHhc--cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC
Confidence            345678888999999999999999994  579999999999888877799999999999999999999999999999888


Q ss_pred             CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      |..++++.+++.+|++++||++++| +|+|++++++++++.+....+..++++++++++++.++|+.++.+++.++++++
T Consensus       251 g~~~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~  329 (420)
T 2pb2_A          251 GDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTK  329 (420)
T ss_dssp             SSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred             CcHHHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            8766666678889999999999999 899999999998888876667888999999999999999988777899999999


Q ss_pred             HHHHHHHhhcccc--cCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHH
Q psy6547         170 GEIFRSELSSPAN--KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL  247 (266)
Q Consensus       170 ~~~l~~~l~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i  247 (266)
                      ++++++.|++ +.  .+.+.. .++.|.   ++++.++.....+..++++.|+++||.+.+++.+++|+++++.++++++
T Consensus       330 ~~~l~~~L~~-~~~~~~~~~~-~~~~g~---~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei  404 (420)
T 2pb2_A          330 RQQFVQHLQA-IDEQFDIFSD-IRGMGL---LIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADI  404 (420)
T ss_dssp             HHHHHHHHHH-HHHHHCCEEE-EEEETT---EEEEEECGGGTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHH-HHhcCCCeEE-EEecce---EEEEEECCCchHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHH
Confidence            9999999988 42  233333 567788   9999887521125788999999999999998789999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy6547         248 REGLDIIINTINTMA  262 (266)
Q Consensus       248 ~~~~~~l~~~~~~~~  262 (266)
                      ++++++|+++++++.
T Consensus       405 ~~~~~~l~~~l~~~~  419 (420)
T 2pb2_A          405 HEGMQRFAQAVGKVV  419 (420)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988753

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=8.5e-36  Score=264.55  Aligned_cols=253  Identities=28%  Similarity=0.492  Sum_probs=214.5

Q ss_pred             ccCCcCcccccCCCCCCceeecC--------CC---------HHHHHHHHh-cC-CCEEEEEEccc-cCCCCcccCChHH
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPY--------ND---------VDALEAKLK-SN-PNICAFMVEPI-QGEAGAVVPDDGY   62 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~--------~d---------~~~l~~~l~-~~-~~~~~i~~~~~-~~~~g~~~~~~~~   62 (266)
                      +++.+.....|.|..+++..++.        +|         +++|+++++ .+ +++++|++||+ +| +|.+.+++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~  237 (452)
T 3n5m_A          159 ATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDY  237 (452)
T ss_dssp             SCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTH
T ss_pred             cCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHH
Confidence            44555566678888888887775        44         899999996 22 37999999999 89 9988789999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCC
Q psy6547          63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTH  136 (266)
Q Consensus        63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~  136 (266)
                      +++|+++|++||+++|+||+|+||+++|..++.+.+++.||++++||++++|++|+|++++++++++.+..      ..+
T Consensus       238 l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~  317 (452)
T 3n5m_A          238 MKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRH  317 (452)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCC
T ss_pred             HHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccc
Confidence            99999999999999999999999999998888888999999999999999886899999999999988843      247


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc------
Q psy6547         137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI------  209 (266)
Q Consensus       137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------  209 (266)
                      ..++++++++++++.++|+.++.+++.++++++.+++++.|++.+.. +.+.. .++.|.   ++++.+.....      
T Consensus       318 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~---~~~i~~~~~~~~~~~~~  393 (452)
T 3n5m_A          318 INTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGD-IRGKGL---LVGIELVNDKETKEPID  393 (452)
T ss_dssp             CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-EEESSS---CEEEEEEEETTTTEECC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEEEEE---EEEEEEecCCcccCCCC
Confidence            78999999999999999999888889999999999999999883333 33444 788899   99998854210      


Q ss_pred             -chHHHHHHHHHHCCceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         210 -LEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       210 -~~~~~~~~~l~~~gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       ....++++.|+++||++.+.+      .+++|++|++.+|++++++++++|++++++
T Consensus       394 ~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          394 NDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             HHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence             124578999999999999875      589999999999999999999999998764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=9.1e-36  Score=262.15  Aligned_cols=237  Identities=20%  Similarity=0.321  Sum_probs=205.1

Q ss_pred             CCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   95 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~   95 (266)
                      ..++..+||||++++++.++++. ++++|++||+++++|.+.++++++++|+++|++||+++|+||+++  ||+|..++.
T Consensus       196 ~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~  273 (454)
T 4ao9_A          196 PFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLA  273 (454)
T ss_dssp             CSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGSTTCHH
T ss_pred             CCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCccccch
Confidence            34677899999999999998754 899999999999999999999999999999999999999999998  488998898


Q ss_pred             ccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC----CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          96 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        96 ~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      +.+|+.||+++++|+++|| +|+|++++++++++.+.+.    .+.+||++||+++++++++|+.++++++.+++.++.+
T Consensus       274 e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~  352 (454)
T 4ao9_A          274 NKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGE  352 (454)
T ss_dssp             HHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence            9999999999999999999 8999999999999988642    5789999999999999999999998999999999999


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      +++++|++......+...+++.|.   ++.+.+.+.+           ..-...+...|+++||++.|.+  .  +.++.
T Consensus       353 ~l~~~L~~l~~~~~~~~~vrg~G~---m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~--~--~~~s~  425 (454)
T 4ao9_A          353 ALRARLNALCANEGVAMQFTGIGS---LMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG--F--VVLSL  425 (454)
T ss_dssp             HHHHHHHHHHHHHTBSCEEEEETT---EEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--E--EECCT
T ss_pred             HHHHHHHHHHhhCCCCEEEeeece---EEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--C--EEEeC
Confidence            999999984444344444899999   9999875421           1123457788999999998863  3  34556


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         241 NITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      .+|++|||+++++|++++.++..
T Consensus       426 ~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          426 PLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhccc
Confidence            79999999999999999998654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=1.2e-35  Score=262.44  Aligned_cols=247  Identities=29%  Similarity=0.474  Sum_probs=209.9

Q ss_pred             cccccCCCCCCceeecCC----------CHHHHHHHHh-c-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           9 SYNEFGPHMPGYNIIPYN----------DVDALEAKLK-S-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~----------d~~~l~~~l~-~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      .+..|.|+..++..++++          |+++|+++++ . .+++++|+++|+++++|.+.++.+++++|+++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  237 (439)
T 3dxv_A          158 DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL  237 (439)
T ss_dssp             ------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred             hccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            455677777778888887          6999999993 3 237899999999999999988999999999999999999


Q ss_pred             EEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH
Q psy6547          77 FIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        77 li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  156 (266)
                      ||+||+|++|++.|..+..+.+++.+|++++||++++| +|+||+++++++++.+....+..++ +++++++++.++++.
T Consensus       238 li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~  315 (439)
T 3dxv_A          238 VVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLET  315 (439)
T ss_dssp             EEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCC-cceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH
Confidence            99999999998888877778889999999999999999 8999999999999998877778889 999999999999998


Q ss_pred             HhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCceeccC
Q psy6547         157 ILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      ++.+++.++++++.+++++.|++.... ..+.. .++.|.   ++++.+...      +..+..++++.|+++||.+.++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  391 (439)
T 3dxv_A          316 IDRDDLPAMAERKGRLLRDGLSELAKRHPLIGD-IRGRGL---ACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYV  391 (439)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETT---EEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEE
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEEEE---EEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeec
Confidence            888889999999999999999883222 33333 678898   999988421      1345788999999999999987


Q ss_pred             CC--CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SN--NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.  +++|+++++.+|++++++++++|+++++++
T Consensus       392 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          392 GMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             STTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            54  899999999999999999999999999876

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=7.7e-35  Score=253.56  Aligned_cols=245  Identities=42%  Similarity=0.793  Sum_probs=217.1

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ++.++.....|.|...++..++++|+++|+++++  +++++|++++++|++|.+..+.+++++|+++|++||+++|+||+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~  224 (392)
T 3ruy_A          147 MSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAIT--PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEI  224 (392)
T ss_dssp             TCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCC--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred             ccCChhhccccCCCCCCCeeeCcccHHHHHHHhc--cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            3455666677888888999999999999999994  67999999999999999876777799999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      |++|++.|..+..+.+++.+|++++||+++||++|+|++++++++.+.+....+..+++.++++++++.++++.++.+++
T Consensus       225 ~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  304 (392)
T 3ruy_A          225 QTGLGRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKL  304 (392)
T ss_dssp             TTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred             hhCCCccccchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence            99998888877777788899999999999988679999999999999888878888999999999999999998877889


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      .++++++++++++.|++ ++...+.. .++.|.   ++++.++.    +..++++.|.++||.+.+++.+++|++++..+
T Consensus       305 ~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~g~---~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~  375 (392)
T 3ruy_A          305 TERSLQLGEKLVGQLKE-IDNPMITE-VRGKGL---FIGIELNE----PARPYCEQLKAAGLLCKETHENVIRIAPPLVI  375 (392)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCTTEEE-EEEETT---EEEEEESS----CSHHHHHHHHTTTEECCCBTTTEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCceE-EEeeee---EEEEEEcc----hHHHHHHHHHHCCcEEecCCCCEEEEECCCCC
Confidence            99999999999999998 55444444 566788   99998764    56789999999999999998899999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTI  258 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~  258 (266)
                      +++++++++++|++++
T Consensus       376 ~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          376 SEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999876

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=2e-35  Score=260.41  Aligned_cols=255  Identities=29%  Similarity=0.492  Sum_probs=203.9

Q ss_pred             cCCcCcccccCCCCC--CceeecCCC--------HHHHHHHHhcC--CCEEEEEEccccC-CCCcccCChHHHHHHHHHH
Q psy6547           4 TTDPTSYNEFGPHMP--GYNIIPYND--------VDALEAKLKSN--PNICAFMVEPIQG-EAGAVVPDDGYLKKVRALC   70 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~--~v~~~~~~d--------~~~l~~~l~~~--~~~~~i~~~~~~~-~~g~~~~~~~~l~~l~~l~   70 (266)
                      ++.+.....+.|+.+  ++..+++++        +++|++++++.  +++++|++||+++ ++|.+.++++++++|+++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~  221 (430)
T 3i4j_A          142 SGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDIC  221 (430)
T ss_dssp             --------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHH
T ss_pred             cCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHH
Confidence            344444556777777  888999874        49999999641  4789999999999 9999889999999999999


Q ss_pred             HhcCCEEEEeccccCcCCcCcccccccC-CCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCCCCCCCCcHH
Q psy6547          71 SQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTHGSTYGGNPL  145 (266)
Q Consensus        71 ~~~g~~li~De~~~~~~~~g~~~~~~~~-~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~  145 (266)
                      ++||+++|+||+|++|++.|..++...+ ++.+|++++||++++|++|+||+++++++++.+..    ..+..+++++++
T Consensus       222 ~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~  301 (430)
T 3i4j_A          222 DEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPV  301 (430)
T ss_dssp             HHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHH
T ss_pred             HHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHH
Confidence            9999999999999999998887788888 99999999999999887899999999999888764    257889999999


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-------cchHHHHHH
Q psy6547         146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-------ILEVYDVCI  217 (266)
Q Consensus       146 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~  217 (266)
                      +++++.++|+.++.+++.++++++.+++++.|++.... +.+.. .++.|.   |+++.+.+..       ...+.++++
T Consensus       302 ~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (430)
T 3i4j_A          302 SVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQ-VRGTGL---LLGVVLGDLATGQAFETPGIASRIGA  377 (430)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETT---EEEEEEC------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEEEE---EEEEEeccccccCCCccHHHHHHHHH
Confidence            99999999998888889999999999999999883322 34444 678899   9999886411       112467999


Q ss_pred             HHHHCCceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         218 KMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       218 ~l~~~gi~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .|+++||+++++       +++++|+++++.++++++++++++|+++++++.
T Consensus       378 ~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  429 (430)
T 3i4j_A          378 AALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVL  429 (430)
T ss_dssp             HHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999986       368999999999999999999999999998753

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=1.1e-34  Score=253.48  Aligned_cols=251  Identities=34%  Similarity=0.583  Sum_probs=218.2

Q ss_pred             CCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +.+.....|.|...++..++++|+++|+++++  +++++|+++|+++++|.+.++.+++++|+++|++||+++|+||+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~  227 (406)
T 4adb_A          150 GQPAYSQDFAPLPADIRHAAYNDINSASALID--DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT  227 (406)
T ss_dssp             SCGGGTGGGCSCCSSEEEECTTCHHHHHTTCS--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCccccccCCCCCCCceEeCCCcHHHHHHHhc--CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            44555666888889999999999999999993  5799999998777677665699999999999999999999999999


Q ss_pred             CcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547          85 GLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus        85 ~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      +|++.|..+....+++.+|++++||++++| +|+||+++++++.+.+....+..++++++++++++.++++.++.+++.+
T Consensus       228 ~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  306 (406)
T 4adb_A          228 GVGRTGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN  306 (406)
T ss_dssp             TTTTTSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHH
T ss_pred             CCCccchhHHHHhcCCCCCEEEechhhcCC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            998888877777778899999999999999 9999999999999999887788899999999999999999887778999


Q ss_pred             HHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         165 NAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      +++++++++++.|++ +..  ..+.. .++.|.   ++++.++.....+..++++.|.++||.+.+++.+++|++++..+
T Consensus       307 ~~~~~~~~l~~~l~~-~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~  381 (406)
T 4adb_A          307 GVKQRHDWFVERLNT-INHRYGLFSE-VRGLGL---LIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNV  381 (406)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCCEEE-EEEETT---EEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHH-HHHhCCCceE-EEEEEE---EEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCC
Confidence            999999999999988 432  23333 567788   99999976212257899999999999999988899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q psy6547         243 TEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +++++++++++|+++++++..
T Consensus       382 ~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          382 SEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988654

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.1e-34  Score=256.07  Aligned_cols=240  Identities=25%  Similarity=0.362  Sum_probs=206.7

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .+++.+|++|+++|+++++++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|++| +.|..++.+
T Consensus       179 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~  257 (434)
T 3l44_A          179 QEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQD  257 (434)
T ss_dssp             TTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHH
T ss_pred             CceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHH
Confidence            378899999999999999653 478999999999999999889999999999999999999999999999 888877777


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      .+++.||++++||++++| +|+|++++++++++.+..   ..+..++++++++++++.++++.++.+++.++++++++++
T Consensus       258 ~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l  336 (434)
T 3l44_A          258 LLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATL  336 (434)
T ss_dssp             HHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             HcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            889999999999999999 999999999999988875   3477899999999999999999888888999999999999


Q ss_pred             HHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      ++.|++......+....++.|.   ++++.+....           .....++++.|+++||.+++++.+.+|++  +.+
T Consensus       337 ~~~L~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~  411 (434)
T 3l44_A          337 EKGILEQAAKHNIDITLNRLKG---ALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEH  411 (434)
T ss_dssp             HHHHHHHHHHTTCCEEEEEETT---EEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTC
T ss_pred             HHHHHHHHHhCCCCEEEEeecc---EEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--ccc
Confidence            9999883333233222778899   9999884311           22357789999999999999877888885  789


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhc
Q psy6547         243 TEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      |++++++++++|+++++++...
T Consensus       412 t~e~i~~~l~~l~~~l~~~~~~  433 (434)
T 3l44_A          412 TKEDIEYTIEAVGRAFAALADN  433 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999886543

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.8e-34  Score=255.91  Aligned_cols=241  Identities=27%  Similarity=0.409  Sum_probs=206.7

Q ss_pred             cccccCCCCCCceeecCCC--HHH-------------HHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547           9 SYNEFGPHMPGYNIIPYND--VDA-------------LEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ   72 (266)
Q Consensus         9 ~~~~~~~~~~~v~~~~~~d--~~~-------------l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~   72 (266)
                      ....|.|+..+++.+|++|  .+.             |++++++ .+++++|++||++|++|.+.++++++++|+++|++
T Consensus       184 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  263 (449)
T 2cjg_A          184 ITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE  263 (449)
T ss_dssp             HHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH
T ss_pred             hcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH
Confidence            3456778888999999988  443             8888864 25799999999999999878999999999999999


Q ss_pred             cCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc-----CCCCCCCCCCCcHHHH
Q psy6547          73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-----VPGTHGSTYGGNPLAC  147 (266)
Q Consensus        73 ~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  147 (266)
                      ||+++|+||+|+||++.|..+.++.+++.+|++++||++     |+|++++++++.+.+     ....+..+++++++++
T Consensus       264 ~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~  338 (449)
T 2cjg_A          264 FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDM  338 (449)
T ss_dssp             TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHH
T ss_pred             CCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHH
Confidence            999999999999999988876767778899999999998     689999999888763     2345678899999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc--cCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         148 KLAMTALDVILEENMIENAYKMGEIFRSELSSPAN--KSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       148 ~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      +++.++|+.+.++++.+++++++++++++|++ +.  .+. +.. .++.|.   |+++.++.  ..+..+++++|+++||
T Consensus       339 ~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~-~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~Gv  411 (449)
T 2cjg_A          339 VRARRILEVIEAEGLFERAVQHGKYLRARLDE-LAADFPAVVLD-PRGRGL---MCAFSLPT--TADRDELIRQLWQRAV  411 (449)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-HHHHSTTTSEE-EEEETT---EEEEECSS--HHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHhhCCCceee-EeeccE---EEEEEECC--hHHHHHHHHHHHHCCe
Confidence            99999999887788999999999999999998 53  233 444 678898   99998865  3357789999999999


Q ss_pred             eeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++.+++.+++|+++++.+|++++++++++|+++++++
T Consensus       412 ~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          412 IVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             ECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999878999999999999999999999999998764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=6.1e-34  Score=251.14  Aligned_cols=245  Identities=25%  Similarity=0.421  Sum_probs=203.9

Q ss_pred             cccCCCCCCceeecC--------C---------CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHH
Q psy6547          11 NEFGPHMPGYNIIPY--------N---------DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS   71 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~--------~---------d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~   71 (266)
                      ..|.|...++..++.        +         |+++|++++++.  +++++|++||+++++|.+.++++++++|+++|+
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~  234 (433)
T 1zod_A          155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE  234 (433)
T ss_dssp             SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred             cccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            345566667777653        2         389999999642  478999999998888987789999999999999


Q ss_pred             hcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHH
Q psy6547          72 QYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKL  149 (266)
Q Consensus        72 ~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a  149 (266)
                      +||+++|+||+|++|++.|..+.++.+++.+|++++||++++| +|+||+++++++++.+...  .+..+++++++++++
T Consensus       235 ~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a  313 (433)
T 1zod_A          235 ARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAV  313 (433)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHH
T ss_pred             HhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHH
Confidence            9999999999999998888766666678899999999999999 9999999999988777543  344788999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc--cCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHH
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPAN--KSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKD  221 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~  221 (266)
                      +.++++.++++++.+++++++++++++|++ +.  .+.+.. .++.|.   |+++.++...      ..+..++++.|++
T Consensus       314 ~~aal~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~~-~~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  388 (433)
T 1zod_A          314 GLRVLDVVQRDGLVARANVMGDRLRRGLLD-LMERFDCIGD-VRGRGL---LLGVEIVKDRRTKEPADGLGAKITRECMN  388 (433)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHCTTEEE-EEEETT---EEEEEEEEETTTTEECTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHhCCCeEE-EEEEEE---EEEEEEecCccccCCChHHHHHHHHHHHH
Confidence            999999888888999999999999999988 43  233333 667888   9999886510      1247789999999


Q ss_pred             CCceeccCC--C--CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         222 AGLVTKPIS--N--NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       222 ~gi~~~~~~--~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +||.+.++.  +  +++|+++++.++++++++++++|+++++++
T Consensus       389 ~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             TTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999864  2  899999999999999999999999998764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=5.4e-34  Score=252.71  Aligned_cols=245  Identities=28%  Similarity=0.521  Sum_probs=204.6

Q ss_pred             cccCCCCCCceeecCC----------C--------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHH
Q psy6547          11 NEFGPHMPGYNIIPYN----------D--------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALC   70 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~----------d--------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~   70 (266)
                      +.|.|...++..++.+          |        +++|++++++.  +++++|+++|+++++|.+.++++++++|+++|
T Consensus       170 ~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~  249 (449)
T 3a8u_X          170 KLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC  249 (449)
T ss_dssp             TTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             cccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence            3456666677766543          5        89999999642  47899999999888998888999999999999


Q ss_pred             HhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---------CCCCCCC
Q psy6547          71 SQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---------THGSTYG  141 (266)
Q Consensus        71 ~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---------~~~~~~~  141 (266)
                      ++||+++|+||+|++|++.|..+..+.+++.+|++++||++++|++|+|++++++++++.+...         .+..+++
T Consensus       250 ~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~  329 (449)
T 3a8u_X          250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS  329 (449)
T ss_dssp             HHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTT
T ss_pred             HHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCc
Confidence            9999999999999999888876666777888999999999997757999999999888777543         3567888


Q ss_pred             CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-cc--hHHHHHH
Q psy6547         142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-IL--EVYDVCI  217 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~~--~~~~~~~  217 (266)
                      +++++++++.++|+.++.+++.+++++++++++++|++ ++. +.+.. .++.|.   ++++.++... ..  +..++++
T Consensus       330 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~~~~g~---~~~i~~~~~~~~~~~~~~~~~~  404 (449)
T 3a8u_X          330 AHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG-IKGAKNVID-IRNFGL---AGAIQIAPRDGDAIVRPFEAGM  404 (449)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT-TTTSTTEEE-EEEETT---EEEEEECCBTTBSSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhcCCCeEE-EeeeEE---EEEEEEecCcccccccHHHHHH
Confidence            99999999999999888888999999999999999998 653 33333 567788   9999987521 11  3447999


Q ss_pred             HHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         218 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       218 ~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .|.++||.+++++ +++|+++++.++++++++++++|+++++++
T Consensus       405 ~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          405 ALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             HHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999975 999999999999999999999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-33  Score=247.58  Aligned_cols=236  Identities=34%  Similarity=0.622  Sum_probs=195.6

Q ss_pred             cccCCCCCCceeecCCC---------------------HHHHH-HHHhcC---CCEEEEEEccccCCCCcccCChHHHHH
Q psy6547          11 NEFGPHMPGYNIIPYND---------------------VDALE-AKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKK   65 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d---------------------~~~l~-~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~   65 (266)
                      ..+.|...+++.+++++                     +++|+ +++++.   +++++|++||+++++|.+.++++++++
T Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~  237 (419)
T 2eo5_A          158 SIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAE  237 (419)
T ss_dssp             CSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred             cccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHH
Confidence            35667777889988764                     57888 888642   478999999998888987789999999


Q ss_pred             HHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547          66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL  145 (266)
Q Consensus        66 l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (266)
                      |+++|++||+++|+||+|++|++.|..+..+..++.+|++++||++++|++|+||+++++++. .+ ...+..+++++++
T Consensus       238 l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~  315 (419)
T 2eo5_A          238 LQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL  315 (419)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred             HHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence            999999999999999999999888876666667889999999999998767999999999887 66 4467788999999


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce
Q psy6547         146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV  225 (266)
Q Consensus       146 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  225 (266)
                      +++++.++|+.++.  +.++++++++++.+.|++ +    +.. .++.|+   |+++.+... ..... ++++|+++||.
T Consensus       316 ~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~-~----~~~-~~~~g~---~~~i~~~~~-~~~~~-~~~~l~~~Gv~  382 (419)
T 2eo5_A          316 ACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQG-L----ADD-VRGIGL---AWGLEYNEK-KVRDR-IIGESFKRGLL  382 (419)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-S----SSE-EEEETT---EEEEECSCH-HHHHH-HHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-h----hhh-eEeeeE---EEEEEEecC-ccHHH-HHHHHHHCCCE
Confidence            99999999987654  889999999999999988 4    333 677888   999988320 22356 99999999999


Q ss_pred             eccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         226 TKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       226 ~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++++.+++|+++++.+|++++++++++|+++++++
T Consensus       383 v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          383 LLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             CEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999877899999999999999999999999988653

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=5.6e-33  Score=244.23  Aligned_cols=244  Identities=29%  Similarity=0.559  Sum_probs=205.2

Q ss_pred             ccCCCCCCceeecCC----------CHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547          12 EFGPHMPGYNIIPYN----------DVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~----------d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      .|.|...+++.++.+          |+++|++++++.   +++++|+++|+++++|.+.++.+++++|+++|++||++||
T Consensus       158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li  237 (426)
T 1sff_A          158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  237 (426)
T ss_dssp             TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            455555668777753          689999999641   4789999999877788777999999999999999999999


Q ss_pred             EeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          79 ADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        79 ~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +||+|++|++.|..+.++..++.+|++++||++++| +|+||+++++++++.+....+..+++.++++++++.++|+.++
T Consensus       238 ~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          238 ADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             EechhhccCcccchhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence            999999998877766666778889999999999999 9999999999998888766677888899999999999999888


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccc--cCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHHHCCceeccCC
Q psy6547         159 EENMIENAYKMGEIFRSELSSPAN--KSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMKDAGLVTKPIS  230 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~  230 (266)
                      .+++.+++++++++++++|++ +.  .+.+.. .++.|.   ++++.+..      ..+.+..+++++|.++||.+.++.
T Consensus       317 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~  391 (426)
T 1sff_A          317 QENLLQKANDLGQKLKDGLLA-IAEKHPEIGD-VRGLGA---MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG  391 (426)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHH-HHHTCTTEEE-EEEETT---EEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEES
T ss_pred             hcCHHHHHHHHHHHHHHHHHH-HHHhCCCeEE-EEEEEE---EEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCC
Confidence            788999999999999999988 54  222333 456688   99999853      113457889999999999999875


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                        .+++|+++++.++++++++++++|+++++++
T Consensus       392 ~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          392 PYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence              6899999998999999999999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=1.6e-33  Score=248.29  Aligned_cols=238  Identities=23%  Similarity=0.384  Sum_probs=202.9

Q ss_pred             CCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ...++..++++|+++|+++++++ +++++|+++|+++++|.+..+.+++++|+++|++||+++|+||+|+|| +.|..+.
T Consensus       175 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~  253 (429)
T 4e77_A          175 FAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGA  253 (429)
T ss_dssp             GGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCH
T ss_pred             cCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchH
Confidence            34567889999999999999764 479999999999999999888999999999999999999999999999 8888777


Q ss_pred             cccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+.+++.||++++||++++| +|+|++++++++++.+...   .+..++++++++++++.++|+.++.+++.++++++++
T Consensus       254 ~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~  332 (429)
T 4e77_A          254 QDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTD  332 (429)
T ss_dssp             HHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred             HHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            88889999999999999999 8999999999999888753   4778899999999999999999877889999999999


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------------cchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPA  239 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~  239 (266)
                      ++++.|++......+....++.|.   ++++.+....            .....++++.|+++||++.+++...+|+  +
T Consensus       333 ~l~~~L~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~  407 (429)
T 4e77_A          333 SLATGLRHAAKEENIPLVVNHVGG---MFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFM--S  407 (429)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEETT---EEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEEC--C
T ss_pred             HHHHHHHHHHHhCCCceEEEEeee---EEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEEE--e
Confidence            999999883333333333778899   9999987631            1234789999999999999987666665  4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ..+|++++++++++|++++++
T Consensus       408 ~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          408 LAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999998754

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=3.8e-33  Score=245.81  Aligned_cols=242  Identities=29%  Similarity=0.478  Sum_probs=202.6

Q ss_pred             ccCCCCCCceeecC-----------CCHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547          12 EFGPHMPGYNIIPY-----------NDVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus        12 ~~~~~~~~v~~~~~-----------~d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      .|.+...+++.++.           .|+++|+++++++ +++++|+++|+ +|++|.+.++++++++|+++|++||+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li  243 (429)
T 1s0a_A          164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI  243 (429)
T ss_dssp             GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEE
T ss_pred             cccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            45555556655543           4789999999642 47899999999 88899887899999999999999999999


Q ss_pred             EeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHHHHHHHHHH
Q psy6547          79 ADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        79 ~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~  153 (266)
                      +||+|++|++.|..+..+..++.+|++++||++++|++|+|++++++++++.+...     .+..++++|+++++++.++
T Consensus       244 ~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aa  323 (429)
T 1s0a_A          244 ADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS  323 (429)
T ss_dssp             EECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHH
T ss_pred             EeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHH
Confidence            99999999888876666667888999999999998757999999999888777543     2557888999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCC
Q psy6547         154 LDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN  232 (266)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  232 (266)
                      ++.++++++.+++++++++++++|++ +.. +.+.. .++.|.   ++++.++.  ..+..++++.|+++||.+++. ++
T Consensus       324 l~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~~~~g~---~~~~~~~~--~~~~~~l~~~l~~~Gi~v~~~-~~  395 (429)
T 1s0a_A          324 LAILESGDWQQQVADIEVQLREQLAP-ARDAEMVAD-VRVLGA---IGVVETTH--PVNMAALQKFFVEQGVWIRPF-GK  395 (429)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHGG-GGGCTTEEE-EEEETT---EEEEEESS--CBCHHHHHHHHHHTTEECCCB-TT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHH-HhcCCCEEE-EEEeeE---EEEEEECC--cccHHHHHHHHHHCCCEEecc-CC
Confidence            99888778899999999999999998 532 33333 566788   99998875  356788999999999999987 48


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++|+++++.+|++++++++++|+++++++
T Consensus       396 ~iRis~~~~~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          396 LIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999987654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=2.6e-33  Score=244.37  Aligned_cols=238  Identities=33%  Similarity=0.629  Sum_probs=203.6

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      .|.|...+++.++++|+++|++.++  +++++|++++++|++|.+.++.+++++|+++|++||+++|+||+|+++++.|.
T Consensus       157 ~~~p~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~  234 (397)
T 2ord_A          157 PFEPLVPGFEYFEFNNVEDLRRKMS--EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK  234 (397)
T ss_dssp             GGCSCCTTEEEECTTCHHHHHHHCC--TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred             ccCCCCCCeeEecCCCHHHHHHHhh--cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc
Confidence            4556667799999999999999994  57999999999999998569999999999999999999999999998877776


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+....++..+|++++||++++| +|+|++++++++. .+....+..+++.++++++++.++|+.++.+++.++++++++
T Consensus       235 ~~~~~~~~~~~d~~s~sK~~~~G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  312 (397)
T 2ord_A          235 LFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGN  312 (397)
T ss_dssp             SSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred             chhhhhhCCCCCeeeeccccCCC-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            55555566779999999999999 8999999988877 666555677888999999999999998877779999999999


Q ss_pred             HHHHHhhcccc--cCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHH
Q psy6547         172 IFRSELSSPAN--KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE  249 (266)
Q Consensus       172 ~l~~~l~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~  249 (266)
                      ++++.|++ +.  .+.+.. .++.|.   ++++.++.  ..+..+++++|.++||.+.+++.+++|+++++.++++++++
T Consensus       313 ~l~~~L~~-~~~~~~~~~~-~~~~g~---~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~  385 (397)
T 2ord_A          313 YLMKKLQE-MKEEYDVVAD-VRGMGL---MIGIQFRE--EVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDL  385 (397)
T ss_dssp             HHHHHHHH-HHHHCTTEEE-EEEETT---EEEEEECT--TSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHH-HHHhCCceEE-EEEEeE---EEEEEECC--hHHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHH
Confidence            99999988 53  232222 456788   99998875  34578899999999999999878899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy6547         250 GLDIIINTINT  260 (266)
Q Consensus       250 ~~~~l~~~~~~  260 (266)
                      ++++|++++++
T Consensus       386 ~~~~l~~~l~~  396 (397)
T 2ord_A          386 AVETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=1.6e-33  Score=248.38  Aligned_cols=235  Identities=23%  Similarity=0.380  Sum_probs=202.1

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .+++.++++|+++|+++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+|++| +.|..+..+
T Consensus       177 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~  255 (429)
T 3k28_A          177 KNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQG  255 (429)
T ss_dssp             TTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHH
T ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHH
Confidence            378889999999999999753 378999999999999999889999999999999999999999999999 888777777


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  173 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  173 (266)
                      .+++.||++++||++++| +|+|++++++++++.+...   .+..++++++++++++.++++.++ +++.++++++++++
T Consensus       256 ~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l  333 (429)
T 3k28_A          256 YYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEML  333 (429)
T ss_dssp             HHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred             HhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            789999999999999999 9999999999999888643   367889999999999999998766 67899999999999


Q ss_pred             HHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         174 RSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       174 ~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      ++.|++.... ..+.. .++.|.   ++++.+....           .....++++.|+++||.+++++.+.+|++  +.
T Consensus       334 ~~~L~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~--~~  407 (429)
T 3k28_A          334 EAGLRKAAEKHGIPHH-INRAGS---MIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLS--TV  407 (429)
T ss_dssp             HHHHHHHHHHTTCCCE-EEEETT---EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCC--TT
T ss_pred             HHHHHHHHhhCCCCEE-EEeecc---EEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEE--CC
Confidence            9999883333 33334 788899   9999875311           22357899999999999999877888886  78


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +|++++++++++|+++++++
T Consensus       408 ~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          408 HSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=1e-32  Score=242.96  Aligned_cols=235  Identities=24%  Similarity=0.376  Sum_probs=201.5

Q ss_pred             CceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          19 GYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      +++.++++|+++|++++++++ ++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..+.
T Consensus       177 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~  255 (427)
T 3fq8_A          177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK  255 (427)
T ss_dssp             TEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHH
T ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHh
Confidence            478899999999999997643 79999999999999999889999999999999999999999999999 8887777778


Q ss_pred             CCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  174 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~  174 (266)
                      +++.||+.++||++++| +|+|++++++++++.+...   .+..++++++++++++.++++.++.+++.+++++++++++
T Consensus       256 ~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~  334 (427)
T 3fq8_A          256 FGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS  334 (427)
T ss_dssp             TTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             cCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            89999999999999999 8999999999999888753   4778889999999999999998888889999999999999


Q ss_pred             HHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547         175 SELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT  243 (266)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t  243 (266)
                      +.|++......+....++.|.   ++++.+....           .....++++.|+++||.+++++..  |++++..+|
T Consensus       335 ~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~--r~~~~~~~t  409 (427)
T 3fq8_A          335 DGLLAIAQETGHAACGGQVSG---MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE--AGFTSLAHT  409 (427)
T ss_dssp             HHHHHHHHHTTCCCEEEEETT---EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS--CEECCTTCC
T ss_pred             HHHHHHHHhCCCCeEEEEeee---EEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCC--CEEeeCcCC
Confidence            999983333333333678899   9999986421           112567999999999999998655  555668999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTINT  260 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~  260 (266)
                      ++++++++++|++++++
T Consensus       410 ~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          410 EEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998865

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=1.3e-32  Score=242.92  Aligned_cols=237  Identities=24%  Similarity=0.396  Sum_probs=199.1

Q ss_pred             CceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          19 GYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      +++.++++|+++|++++++. +++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|| +.|..+..+.
T Consensus       181 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~  259 (434)
T 2epj_A          181 LTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY  259 (434)
T ss_dssp             TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHH
T ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHH
Confidence            57888999999999999653 378999999999989988778999999999999999999999999998 6676666677


Q ss_pred             CCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  174 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~  174 (266)
                      +++.||++++||++++| +|+|++++++++++.+...   .+..++++++++++++.++|+.++++++.+++++++++++
T Consensus       260 ~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~  338 (434)
T 2epj_A          260 FNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALE  338 (434)
T ss_dssp             HTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hCCCCCeeeecchhcCC-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            78899999999999999 9999999999999888752   3567889999999999999999887889999999999999


Q ss_pred             HHhhcccccCCCcccEEecCccceeeEEEEeeC-----------ccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547         175 SELSSPANKSKASFKLSSGGLKKSINTLILSVS-----------AILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT  243 (266)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t  243 (266)
                      +.|++......+....++.|.   |+++.++..           +..+..+++++|+++||.+.+++...+|  +++.+|
T Consensus       339 ~~L~~~~~~~~~~~~~~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t  413 (434)
T 2epj_A          339 EAASEVLDRTGLPYTINRVES---MMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVF--TGLPHQ  413 (434)
T ss_dssp             HHHHHHHHHHTCCEEEEEETT---EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEE--CCTTCS
T ss_pred             HHHHHHHhhCCCcEEEEEeee---EEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcEE--EeccCC
Confidence            999883211122222677888   999998641           0134678999999999999998655555  458899


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy6547         244 EQELREGLDIIINTINTMA  262 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++++++++++|+++++++.
T Consensus       414 ~e~i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          414 GEALEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=4.2e-32  Score=236.52  Aligned_cols=234  Identities=30%  Similarity=0.528  Sum_probs=200.3

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +.|...++..++++|+++|+++++  +++++|+++|+++++|.+..+.+++++|+++|++||+++|+||+|++|++.|..
T Consensus       160 ~~p~~~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~  237 (395)
T 1vef_A          160 FLPLVEPVEFIPYNDVEALKRAVD--EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR  237 (395)
T ss_dssp             GCSCSSCEEEECTTCHHHHHHHCC--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             cCCCCCCeeEeCCCcHHHHHHHhc--cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch
Confidence            456666788889899999999994  478999999999889988778899999999999999999999999988777765


Q ss_pred             cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      +..+..+..+|++++||++++| +|+|++++++++.+.+....+..++++++++++++.++++.+..+++.+++++++++
T Consensus       238 ~~~~~~~~~~d~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  316 (395)
T 1vef_A          238 FAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPW  316 (395)
T ss_dssp             STHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hHhhhcCCCCCEEEEcccccCC-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5555567789999999999999 999999999988888876556778889999999999999988777788999999999


Q ss_pred             HHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHH
Q psy6547         173 FRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGL  251 (266)
Q Consensus       173 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~  251 (266)
                      +++.|++ ++.+.+.. .++.|.   ++++.++.    +..+++++|. ++||.+.+++.+++|++++..++++++++++
T Consensus       317 l~~~l~~-~~~~~~~~-~~~~g~---~~~~~~~~----~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~  387 (395)
T 1vef_A          317 FMEKLRA-IPSPKIRE-VRGMGL---MVGLELKE----KAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVV  387 (395)
T ss_dssp             HHHHHHT-SCCTTEEE-EEEETT---EEEEEESS----CSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHH-hhcCceEE-EEEEEE---EEEEEEcC----hHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHH
Confidence            9999988 54322222 456778   99998875    3678999999 9999999987899999999999999999999


Q ss_pred             HHHHHHH
Q psy6547         252 DIIINTI  258 (266)
Q Consensus       252 ~~l~~~~  258 (266)
                      ++|++++
T Consensus       388 ~~l~~~l  394 (395)
T 1vef_A          388 EAVRAVL  394 (395)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=5.8e-34  Score=267.54  Aligned_cols=228  Identities=24%  Similarity=0.394  Sum_probs=189.0

Q ss_pred             HHHHHHHhc------CCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC
Q psy6547          29 DALEAKLKS------NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR  101 (266)
Q Consensus        29 ~~l~~~l~~------~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~  101 (266)
                      ++|++.|++      ..++++|++||+ ++.+|+++++++++++|+++|++||+++|+||+++|||++|..|+.+.+|+.
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~  656 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK  656 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence            678888852      247999999997 9999999999999999999999999999999999999999999998899999


Q ss_pred             cCeeeecccccCCchhhhhheecHHhhhccCCC------CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy6547         102 PDIVILGKALSGGLYPISAVLADDEVMGTLVPG------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  175 (266)
Q Consensus       102 ~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  175 (266)
                      ||++++||+++||++|+|++++++++++.+...      .++.||+++|+++++++++|+.++++++.+++.++.+++++
T Consensus       657 PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~  736 (831)
T 4a0g_A          657 PDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRE  736 (831)
T ss_dssp             CSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCC
T ss_pred             CcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999999867999999999999888653      48899999999999999999999887776666554444322


Q ss_pred             ----Hhhcccc-cCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCH
Q psy6547         176 ----ELSSPAN-KSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  244 (266)
Q Consensus       176 ----~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~  244 (266)
                          .+.+.+. .+.+.. +++.|+   |+.+++....      ...+.++++.|+++||+++|. ++.+|+++++.+|+
T Consensus       737 ~l~~~l~~~l~~~~~v~~-vrg~Gl---~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~lrl~pp~~~t~  811 (831)
T 4a0g_A          737 LWDEELVQQISSHSAVQR-VVVIGT---LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNVIYLMCGPCTSP  811 (831)
T ss_dssp             CSCHHHHHHHHHSTTEEE-EEEETT---EEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTEEEEECCTTCCH
T ss_pred             HHHHHHHHHHhhCCCcee-Eeeccc---EEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCEEEEECCCCCCH
Confidence                1211122 234555 889999   9999986421      124667999999999999988 58999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINTM  261 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~~  261 (266)
                      ++|++++++|.++++++
T Consensus       812 e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          812 EICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998754

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=7.4e-32  Score=237.29  Aligned_cols=232  Identities=26%  Similarity=0.405  Sum_probs=194.3

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .+++.++++|+++|++++++. +++++|++||+++++|.+.++++++++|+++ ++||++||+||+|+|| +.|..+..+
T Consensus       176 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~  253 (424)
T 2e7u_A          176 KLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATE  253 (424)
T ss_dssp             TTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHH
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHH
Confidence            367889999999999999642 4789999999998889887899999999999 9999999999999999 777666666


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEI  172 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~  172 (266)
                      .+++.||++++||++++| +|+|++++++++++.+...   .+..++++|+++++++.++|+.++. +++.+++++++++
T Consensus       254 ~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~  332 (424)
T 2e7u_A          254 LLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGAR  332 (424)
T ss_dssp             HHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             HhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            778899999999999999 9999999999999888752   3667889999999999999999887 8899999999999


Q ss_pred             HHHHhhcccccCCCcccEEecCccceeeEEEEeeC-----------ccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         173 FRSELSSPANKSKASFKLSSGGLKKSINTLILSVS-----------AILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       173 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      ++++|++......+....++.|.   |+++.+...           +..+..+++++|+++||++.+++...+|+  ++.
T Consensus       333 l~~~L~~~~~~~~~~~~~~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~  407 (424)
T 2e7u_A          333 LEAGLKEVLKEKGLPHTVNRVGS---MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFL--SVA  407 (424)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEETT---EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSSCEEC--CTT
T ss_pred             HHHHHHHHHHhCCCceEEEeece---EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCCceEe--ecc
Confidence            99999883222222222677888   999998641           02346789999999999999986555554  588


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINT  257 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~  257 (266)
                      ++++++++++++|+++
T Consensus       408 ~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          408 HREEDVEKTLEALRKA  423 (424)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999876

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=3.5e-31  Score=228.99  Aligned_cols=229  Identities=33%  Similarity=0.652  Sum_probs=196.1

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      .+.|...++..++++|+++|+++++  +++++|+++|++|++|.+.++.+.+++|.++|++||+++|+||+|++|+..+.
T Consensus       146 ~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~  223 (375)
T 2eh6_A          146 GFEPLVPGFSYAKLNDIDSVYKLLD--EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE  223 (375)
T ss_dssp             TTCSCCSSEEEECTTCHHHHHTTCC--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred             CCCCCCCCceeCCCchHHHHHHHhc--CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Confidence            4556667789999999999999994  47999999999999998877899999999999999999999999998877665


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+....++..+|++++||++++| +|+|++++++++.+.+....+..+++.+++.++++.++|+.+.  ++.++++++++
T Consensus       224 ~~~~~~~~~~~d~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~  300 (375)
T 2eh6_A          224 FYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGN  300 (375)
T ss_dssp             SSGGGGGTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             chhhhhcCCCCCEEEEcccccCC-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            44555667779999999999999 9999999999988888765567788889999999988888765  68889999999


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHH
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL  251 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~  251 (266)
                      ++.+.|++ ++.   .. .++.|.   ++++.++.    +..+++++|.++||.+.+++.+++|++++..++++++++++
T Consensus       301 ~l~~~L~~-~~~---~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~  368 (375)
T 2eh6_A          301 YFKEKLKE-LGK---GK-VKGRGL---MLGLELER----ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAI  368 (375)
T ss_dssp             HHHHHHHH-TTS---SE-EEEETT---EEEEECSS----CCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHH-Hhc---CC-ceEEEE---EEEEEEcC----cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHH
Confidence            99999987 543   22 556788   99998865    45789999999999999887899999999899999999999


Q ss_pred             HHHHHH
Q psy6547         252 DIIINT  257 (266)
Q Consensus       252 ~~l~~~  257 (266)
                      ++|+++
T Consensus       369 ~~l~~~  374 (375)
T 2eh6_A          369 SVLREI  374 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=1e-31  Score=239.49  Aligned_cols=220  Identities=22%  Similarity=0.330  Sum_probs=187.2

Q ss_pred             CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC-
Q psy6547          27 DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR-  101 (266)
Q Consensus        27 d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~-  101 (266)
                      |+++|+++++++    +++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+||++.|..++++.+++. 
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~  320 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD  320 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCC
Confidence            688999999641    169999999999999988899999999999999999999999999999988877777778876 


Q ss_pred             -cCeeeeccc-ccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Q psy6547         102 -PDIVILGKA-LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       102 -~d~~~~sK~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  179 (266)
                       ||+++|||+ ++|| ++    + ++++ ..+....+..|+++++++++++.++|+.+.++++.+++++++++++++|++
T Consensus       321 ~~Di~t~sK~~l~GG-~~----~-~~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  393 (472)
T 1ohv_A          321 PADVMTFSKKMMTGG-FF----H-KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD  393 (472)
T ss_dssp             CCSEEEECGGGSSEE-EE----E-CGGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEccccccCC-cc----C-chhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             999999999 6777 43    2 5554 334455678899999999999999999988888999999999999999998


Q ss_pred             ccc--cC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         180 PAN--KS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       180 ~~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                       +.  .+ .+.. .++.|.   |+++.+.+  ..+..+++++|+++||.+.+.+.+++|+++++.+|++++++++++|++
T Consensus       394 -l~~~~~~~v~~-~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~  466 (472)
T 1ohv_A          394 -LQARYPQFISR-VRGRGT---FCSFDTPD--ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD  466 (472)
T ss_dssp             -HHHHCTTTCEE-EEEETT---EEEEECSS--HHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             -HHhhCCCcEEe-ecCCce---EEEEEeCC--hhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             53  23 2444 677888   99988764  345778999999999999997778999999999999999999999999


Q ss_pred             HHHH
Q psy6547         257 TINT  260 (266)
Q Consensus       257 ~~~~  260 (266)
                      ++++
T Consensus       467 ~l~~  470 (472)
T 1ohv_A          467 ILAD  470 (472)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8865

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=1.1e-31  Score=238.12  Aligned_cols=234  Identities=22%  Similarity=0.355  Sum_probs=191.6

Q ss_pred             CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      .+++.++++|+++|+++++++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..+
T Consensus       178 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~  256 (453)
T 2cy8_A          178 ANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQA  256 (453)
T ss_dssp             GGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHH
T ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhH
Confidence            357788899999999999653 478999999998888888788999999999999999999999999998 777666666


Q ss_pred             cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----CCCCCCCCCcHHHHHHHHHHHHH-HhhccHHHHHHHHH
Q psy6547          97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDV-ILEENMIENAYKMG  170 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~  170 (266)
                      .+++.||++++||++++| +|+|++++++++++.+..     ..+..++++++++++++.++|+. + .+++.+++++++
T Consensus       257 ~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~  334 (453)
T 2cy8_A          257 LLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLG  334 (453)
T ss_dssp             HHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred             HhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence            778899999999999999 899999999999988875     23567889999999999999998 7 778999999999


Q ss_pred             HHHHHHhhcccc-cCCCcccEEecCccceeeEEEEee-----C------------ccchHHHHHHHHHHCCceeccCCCC
Q psy6547         171 EIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSV-----S------------AILEVYDVCIKMKDAGLVTKPISNN  232 (266)
Q Consensus       171 ~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~-----~------------~~~~~~~~~~~l~~~gi~~~~~~~~  232 (266)
                      ++++++|++ +. ...+....++.|.   ++++.++.     .            +..+..+++++|+++||++.+.  +
T Consensus       335 ~~l~~~L~~-~~~~~~~~~~~~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~--~  408 (453)
T 2cy8_A          335 QFAREAMNH-LFARKGLNWLAYGRFS---GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR--G  408 (453)
T ss_dssp             HHHHHHHHH-HHHHTTCCEEEECCTT---EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT--T
T ss_pred             HHHHHHHHH-HHhhCCCcEEEEEeee---EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC--C
Confidence            999999988 42 2222222667888   99999864     1            1223678999999999999764  3


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+|+  ++.++++++++++++|+++++++.
T Consensus       409 ~~~l--~~~~t~~~i~~~l~~l~~~l~~~~  436 (453)
T 2cy8_A          409 SVFL--SAQHEREHVEHLVTTFDRVLDRLA  436 (453)
T ss_dssp             EEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEe--eccCCHHHHHHHHHHHHHHHHHHH
Confidence            3554  589999999999999999988764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.95  E-value=4.1e-34  Score=253.09  Aligned_cols=234  Identities=24%  Similarity=0.302  Sum_probs=199.0

Q ss_pred             CceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          19 GYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        19 ~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      +++.++|+|+++|+++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+ | +.|..++++.
T Consensus       211 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~  288 (465)
T 2yky_A          211 HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEM  288 (465)
Confidence            67788999999999999643 4799999999998899888889999999999999999999999999 6 8888778888


Q ss_pred             CCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  172 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  172 (266)
                      +++.||+++|||++++| +|+||+++++++++.+..     ..+..|+++|+++++++.++|+.++++++.+++.+++++
T Consensus       289 ~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~  367 (465)
T 2yky_A          289 LGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDR  367 (465)
Confidence            89999999999999999 999999999999988876     357789999999999999999999888899999999999


Q ss_pred             HHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         173 FRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       173 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      ++++|++......+...+++.|.   |+++.+.+..           .....+++++|+++||++.|++...    +++.
T Consensus       368 l~~~L~~~~~~~~~~~~v~g~G~---~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~----~s~~  440 (465)
T 2yky_A          368 FRANLNRIAVENQAPLQFTGLGS---LGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA----LSLE  440 (465)
Confidence            99999983333233233778899   9999876410           1125678999999999999875332    6688


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q psy6547         242 ITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +|++++++++++|+++++++.
T Consensus       441 ~t~edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          441 IADAGRDAFAEALADFIGEQR  461 (465)
Confidence            999999999999999987753

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.95  E-value=1.6e-27  Score=211.23  Aligned_cols=247  Identities=19%  Similarity=0.232  Sum_probs=184.9

Q ss_pred             cCcccccCCCCCCceeecC----CCHHHHHHHHh----cCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPY----NDVDALEAKLK----SNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~----~d~~~l~~~l~----~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +.....+...+.+++.++.    .|+++|+++++    +.+++++|++.+ .+|++|.+ ++.+.+++|+++|++||++|
T Consensus       175 ~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~l  253 (448)
T 3aow_A          175 LAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIV  253 (448)
T ss_dssp             HHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEE
Confidence            3333445567788888886    38999999996    323789987655 56777776 89999999999999999999


Q ss_pred             EEeccccCcCCcCcc----cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKL----LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        78 i~De~~~~~~~~g~~----~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      |+||+|+++...|..    ..++..+..+++.+|||++++| +|+||+++++++.+.+.......+++++++++.++..+
T Consensus       254 I~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~  332 (448)
T 3aow_A          254 VEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRY  332 (448)
T ss_dssp             EEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             EEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999887544432    2233334566778899999989 99999999999888876544455667789999988888


Q ss_pred             HHHH--hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         154 LDVI--LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       154 l~~~--~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      |+..  ..  +.+.++++++++++.+.|++.++. .+....+..|+   |+|+.++.  +.+..+++++|.++||.+.|+
T Consensus       333 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~~p~~g~---~~~v~~~~--~~~~~~l~~~l~~~gV~v~pg  406 (448)
T 3aow_A          333 VDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE-GVKWTKPEGGM---FIWVTLPD--GIDSKKMLERAIKKGVAYVPG  406 (448)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TCEECCCSBSS---EEEEECST--TCCHHHHHHHHHHTTEECEEG
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEeCCCccE---EEEEEcCC--CCCHHHHHHHHHHCCcEEEcc
Confidence            8642  11  345666667788888888762221 22221233577   89999876  557889999999999999874


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                              ..+++|++++. .+++++++++++|.+++++..
T Consensus       407 ~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~  446 (448)
T 3aow_A          407 EAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEEL  446 (448)
T ss_dssp             GGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence                    35799999775 389999999999999998754

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.95  E-value=2.9e-27  Score=204.45  Aligned_cols=236  Identities=17%  Similarity=0.188  Sum_probs=182.1

Q ss_pred             cCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +...+.+++.++.+       |+++|++++  .+++++|++++++|++|.+ ++.+.+++|+++|++||+++|+||+|++
T Consensus       122 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~nptG~~-~~~~~l~~i~~la~~~~~~li~De~~~~  198 (375)
T 3op7_A          122 PKSLGAEVDLWQIEEENGWLPDLEKLRQLI--RPTTKMICINNANNPTGAV-MDRTYLEELVEIASEVGAYILSDEVYRS  198 (375)
T ss_dssp             HHHTTCEEEEEEEEGGGTTEECHHHHHHHC--CTTCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred             HHHcCCEEEEEeccccCCCCCCHHHHHHhh--ccCCeEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            34456777777754       899999999  3578899999888988876 7999999999999999999999999988


Q ss_pred             cCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM  162 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~  162 (266)
                      +...+.....+.++..+++.++||+++ +| +|+||+++++++.+.+.......+++++++.++++..+++..+.  +..
T Consensus       199 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  277 (375)
T 3op7_A          199 FSELDVPSIIEVYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERN  277 (375)
T ss_dssp             CSSSCCCCHHHHCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccCCCchhhhcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHH
Confidence            755432223344566678888999998 88 99999999999999998877777888899999888888875432  345


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccCC----CCEEEEe
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPIS----NNIIRLS  237 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~----~~~iR~~  237 (266)
                      .++++++.+.+.+.|++ .+  .+.......|.   +.++.++.  +.+..+++++| .++||.+.|+.    .+++|++
T Consensus       278 ~~~~~~~~~~l~~~l~~-~~--~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~  349 (375)
T 3op7_A          278 RHILEENLAILDQWIEE-EP--LVSYIRPAVVS---TSFVKIAV--DMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG  349 (375)
T ss_dssp             HHHHHHHHHHHHHHHHH-CT--TEEECCCSSSS---CEEEEECC--SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC
T ss_pred             HHHHHHHHHHHHHHHhh-CC--CceEecCCCeE---EEeEEcCC--CCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE
Confidence            55567777777777766 32  22221223455   67777765  45678899888 58899998763    5899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         238 PALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +  ..+++++++++++|.++++++.
T Consensus       350 ~--~~~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          350 F--ACEQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             C--CSCHHHHHHHHHHHHHHHGGGC
T ss_pred             e--cCCHHHHHHHHHHHHHHHHHHh
Confidence            4  4567999999999999997754

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.94  E-value=2.3e-26  Score=200.89  Aligned_cols=240  Identities=18%  Similarity=0.206  Sum_probs=181.6

Q ss_pred             CCCCCCceeecCC----CHHHHHHHHh----cCCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          14 GPHMPGYNIIPYN----DVDALEAKLK----SNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        14 ~~~~~~v~~~~~~----d~~~l~~~l~----~~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ...+.+++.++.+    |+++|+++++    +.+++++|+ ++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+
T Consensus       140 ~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~  218 (407)
T 2zc0_A          140 EQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT-MSMERRKALLEIASKYDLLIIEDTAYN  218 (407)
T ss_dssp             HTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEECCCc
Confidence            3456677777763    8999999996    433688876 45567778876 899999999999999999999999998


Q ss_pred             CcCCcCcc-ccccc---CCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--h
Q psy6547          85 GLGRTGKL-LAIHY---EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L  158 (266)
Q Consensus        85 ~~~~~g~~-~~~~~---~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~  158 (266)
                      ++...|.. ..+..   .+..+++.++||++++| +|+||+++++++.+.+.......+++++++.+.++.++++..  +
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  297 (407)
T 2zc0_A          219 FMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFE  297 (407)
T ss_dssp             TSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHH
T ss_pred             ccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCch
Confidence            87544432 12222   23345667799999999 999999999988887765555566777889998888888753  2


Q ss_pred             ---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC-----
Q psy6547         159 ---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI-----  229 (266)
Q Consensus       159 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-----  229 (266)
                         -+...++++++++++.+.|++.++.  +....+..|.   ++|+.++.  +.+..++++.|.++ ||.+.++     
T Consensus       298 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~---~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~~~~  370 (407)
T 2zc0_A          298 KYHLEGALLGYKEKRDIMLKALENHLPN--AEFTKPIAGM---FVMFFLPE--GADGISFANELMEREGVVVVPGKPFYT  370 (407)
T ss_dssp             HHTTTTHHHHHHHHHHHHHHHHHHHCTT--SCBCCCSBSS---EEEEECST--TCCHHHHHHHHHHHTCEECBCSGGGCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CEEecCCCcE---EEEEEcCC--CCCHHHHHHHHHHhCCeEEECchhccC
Confidence               2457778888888898888762222  2211234567   89998875  55788999999988 9999875     


Q ss_pred             ---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 ---SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 ---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ..+++|++++.. +++++++++++|.++++++.+
T Consensus       371 ~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          371 DESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             SSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence               357999998766 899999999999999987654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.94  E-value=3.1e-27  Score=207.60  Aligned_cols=234  Identities=17%  Similarity=0.189  Sum_probs=176.5

Q ss_pred             CCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.+|.+        |+++|++++++ +++++|++++++|++|.+ ++++++++|+++|++||+++|+||+|++
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~  238 (421)
T 3l8a_A          161 RLNDHRLVENSLQIINGRFEIDFEQLEKDIID-NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQD  238 (421)
T ss_dssp             HHTTEEEEEEECEEETTEEECCHHHHHHHHHH-TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             HHCCCEEEeccccccCCCeeeCHHHHHHHhhc-cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            3345667777753        89999999953 478999999999999955 8999999999999999999999999999


Q ss_pred             cCCcCccc-ccc-----cCCCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCC-CCCCCCCcHHHHHHHHHHHHH
Q psy6547          86 LGRTGKLL-AIH-----YEDVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGT-HGSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        86 ~~~~g~~~-~~~-----~~~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~  156 (266)
                      +.+.|..+ .+.     ..+..+++.++||+++ +| +|+|+++++ +++.+.+.... ...++++++++++++.++++.
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~  317 (421)
T 3l8a_A          239 LALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY  317 (421)
T ss_dssp             CBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCCccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc
Confidence            87766421 111     1244567888999998 88 999999988 78877776543 345568899999999998875


Q ss_pred             Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC----
Q psy6547         157 ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI----  229 (266)
Q Consensus       157 ~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~----  229 (266)
                      .+.  +++.++++++++++++.|++ .  +.+.. ..+.|.  -+.|+.++.. +.+..++++.|++ +||.+.++    
T Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~i~~-~~~~~~--~~~~v~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~  390 (421)
T 3l8a_A          318 GKPWLEELKTVIEGNIKLVIKELEA-K--TKIKV-MEPEGT--YLVWLDFSAY-AIAQPQLSEKLQNEAKVVLNDGAHFG  390 (421)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH-H--CSCEE-ECCSBS--SEEEEECGGG-TCCTTHHHHHHHHTTCEECEEGGGGC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHh-C--CCceE-eCCCee--EEEEEecccc-CCCHHHHHHHHHHhCCEEEECchhhC
Confidence            322  45677778888888888877 4  33443 334444  0455777641 2356789999975 59999874    


Q ss_pred             --CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        +.+++|++++  ++++++++++++|+++++
T Consensus       391 ~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          391 KEGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             GGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             CCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence              3589999966  699999999999998864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.94  E-value=4.6e-26  Score=200.57  Aligned_cols=233  Identities=13%  Similarity=0.126  Sum_probs=182.6

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcC
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTG   90 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g   90 (266)
                      ..+.+++.++++|+++|++++++.+  ++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+++  +..|
T Consensus       167 ~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~----~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g  242 (427)
T 2w8t_A          167 QGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA----PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNG  242 (427)
T ss_dssp             HSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC----CHHHHHHHHHHTTCEEEEECTTTTTTSSTTS
T ss_pred             HcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence            3467889999999999999996532  689999999999999886    5999999999999999999999764  3233


Q ss_pred             cccccccCCCCcC----eeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-ccHH
Q psy6547          91 KLLAIHYEDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMI  163 (266)
Q Consensus        91 ~~~~~~~~~~~~d----~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~-~~~~  163 (266)
                      .. ....+++.++    +.++||+++   .+.||+++++++++.+....  ...+.+.+++.++++.++++.++. +++.
T Consensus       243 ~~-~~~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~  318 (427)
T 2w8t_A          243 RG-VYEAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKR  318 (427)
T ss_dssp             CC-HHHHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHH
T ss_pred             Cc-hHhhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence            33 2223444333    677999996   34689999998888876541  223556788888888899998765 6789


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------CCEEE
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------NNIIR  235 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~iR  235 (266)
                      ++++++++++++.|++ ++.....   .+ .|.   ++++.+++  ..+..+++++|.++||.+.++.       .+++|
T Consensus       319 ~~~~~~~~~l~~~L~~-~g~~~~~---~~~~~~---~~~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR  389 (427)
T 2w8t_A          319 ERLWSNARALHGGLKA-MGFRLGT---ETCDSA---IVAVMLED--QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLR  389 (427)
T ss_dssp             HHHHHHHHHHHHHHHH-HTCEESC---SSCCSS---EEEEEESS--HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHH-cCCcccC---CCCCCC---EEEEEECC--HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEE
Confidence            9999999999999998 5321111   22 456   89999876  4567889999999999998652       36899


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         236 LSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ++++..++++++++++++|+++++++...
T Consensus       390 i~~~~~~t~e~i~~~~~~l~~~l~~~~~~  418 (427)
T 2w8t_A          390 CSICAEHTPAQIQTVLGMFQAAGRAVGVI  418 (427)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            99999899999999999999999886543

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.94  E-value=1.2e-26  Score=204.26  Aligned_cols=221  Identities=19%  Similarity=0.198  Sum_probs=170.0

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-cccc----cCCC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIH----YEDV  100 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~----~~~~  100 (266)
                      .|+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++.+.|.. ..+.    ..+.
T Consensus       170 ~d~~~l~~~l--~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  246 (429)
T 1yiz_A          170 LDNNELEALF--NEKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER  246 (429)
T ss_dssp             CCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGG
T ss_pred             cCHHHHHHHh--ccCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCc
Confidence            4789999999  3578999988888888876 78999999999999999999999999887554431 1221    2345


Q ss_pred             CcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH-----Hhh----ccHHHHHHHHH
Q psy6547         101 RPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-----ILE----ENMIENAYKMG  170 (266)
Q Consensus       101 ~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~----~~~~~~~~~~~  170 (266)
                      ++++.++||.++ +| +|+||+++++++++.+.......+++.+++.++++.++|+.     ...    ++..+++++++
T Consensus       247 ~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  325 (429)
T 1yiz_A          247 TITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR  325 (429)
T ss_dssp             EEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             eEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence            667778999999 88 99999999999888776555566788899999999999987     311    23566677788


Q ss_pred             HHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----------cchHHHHHHHHH-HCCceeccCC---------
Q psy6547         171 EIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----------ILEVYDVCIKMK-DAGLVTKPIS---------  230 (266)
Q Consensus       171 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~l~-~~gi~~~~~~---------  230 (266)
                      +++.+.|++ .+   +.......|.   ++|+.++...          ..+..+++++|. ++||.+.++.         
T Consensus       326 ~~l~~~L~~-~g---~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~  398 (429)
T 1yiz_A          326 DYMASFLAE-VG---MNPTVPQGGY---FMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKH  398 (429)
T ss_dssp             HHHHHHHHH-HT---CEEEECSBSS---EEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGG
T ss_pred             HHHHHHHHh-CC---CcccCCCcce---EEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccC
Confidence            888888877 42   2221223477   8999887520          035778999886 7999998741         


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        .+++|++++  .+++++++++++|+++++
T Consensus       399 ~~~~~iRis~~--~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          399 LGEDFVRYCFF--KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             GTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred             CCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence              579999976  599999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=6.9e-27  Score=205.62  Aligned_cols=245  Identities=19%  Similarity=0.258  Sum_probs=182.2

Q ss_pred             cCCCCCCceeecC----CCHHHHHHHHhc------CCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          13 FGPHMPGYNIIPY----NDVDALEAKLKS------NPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        13 ~~~~~~~v~~~~~----~d~~~l~~~l~~------~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +...+.+++.++.    .|+++|++.+++      ..++++|+ +..++|++|.+ ++.+.+++|+++|++||+++|+||
T Consensus       150 ~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De  228 (425)
T 1vp4_A          150 FRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDD  228 (425)
T ss_dssp             HHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEC
Confidence            3445667777776    389999999965      12688885 55667778876 899999999999999999999999


Q ss_pred             cccCcCCcCcc-ccc---ccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGKL-LAI---HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        82 ~~~~~~~~g~~-~~~---~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      +|+++...|.. ..+   +..+....+.++||++++| +|+||+++++++.+.+.......+++.+++++.++..+|+..
T Consensus       229 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  307 (425)
T 1vp4_A          229 PYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERY  307 (425)
T ss_dssp             SSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHS
T ss_pred             CCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcC
Confidence            99887554432 122   2223344566799999988 999999999988887765444455667899999998888763


Q ss_pred             --hh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---
Q psy6547         158 --LE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---  229 (266)
Q Consensus       158 --~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---  229 (266)
                        ..  +...++++++++++.+.|++.+.. +.+....+..|.   ++|+.++.  +.+..+++++|.++||.+.++   
T Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~---~~~~~~~~--~~~~~~l~~~l~~~gi~v~~g~~f  382 (425)
T 1vp4_A          308 DLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGL---FIWLTLPE--GFDTWEMFEYAKRKKVFYVPGRVF  382 (425)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSS---EEEEECCT--TCCTTTTHHHHHHHTEECEEGGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccE---EEEEEcCC--CCCHHHHHHHHHHCCCEEECchhh
Confidence              11  346677778888888888772221 023221234577   89999875  445678999999999999874   


Q ss_pred             -----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         230 -----SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       230 -----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                           ..+++|++++.. +++++++++++|.++++++.+++
T Consensus       383 ~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~~  422 (425)
T 1vp4_A          383 KVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKEK  422 (425)
T ss_dssp             CTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhhc
Confidence                 357999998764 89999999999999998876554

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.94  E-value=2.6e-26  Score=199.72  Aligned_cols=234  Identities=18%  Similarity=0.242  Sum_probs=184.3

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G   85 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~   85 (266)
                      ..+...+.+++.++++|+++|++++++.    .++++|++++++|++|.+.    ++++|.++|++||+++|+||+|. +
T Consensus       142 ~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~De~~~~~  217 (399)
T 3tqx_A          142 DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA----DLKSICDLADKYNALVMVDDSHAVG  217 (399)
T ss_dssp             HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC----CHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC----CHHHHHHHHHHcCCEEEEECCcccc
Confidence            3445567789999999999999999652    1689999999999999885    49999999999999999999993 4


Q ss_pred             c-CCcCcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHH-
Q psy6547          86 L-GRTGKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVI-  157 (266)
Q Consensus        86 ~-~~~g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~-  157 (266)
                      + +..+.. ....+++  .+|++  ++||+++ | .+.||+++++++++.+.....  ..+.+.+++.++++.++++.. 
T Consensus       218 ~~~~~~~~-~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  294 (399)
T 3tqx_A          218 FIGENGRG-TPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK  294 (399)
T ss_dssp             TSSTTSCC-HHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCc-hHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh
Confidence            3 333322 2333444  56777  6999998 6 678999999998887764211  224467888888999999877 


Q ss_pred             h-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------
Q psy6547         158 L-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------  229 (266)
Q Consensus       158 ~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------  229 (266)
                      + .+++.++++++++++.+.|++ ++.   .. ..+.|.   ++++.++.  ..+..+++++|.++||.+.+.       
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~L~~-~g~---~~-~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~  364 (399)
T 3tqx_A          295 TEGPQLRKQLQENSRYFRAGMEK-LGF---QL-VPGNHP---IIPVMLGD--AQLATNMADHLLQEGIYVVGFSYPVVPM  364 (399)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHH-HTC---CB-CCCSSS---EEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTTSCT
T ss_pred             hccHHHHHHHHHHHHHHHHHHHH-cCC---Cc-CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCCEEeeeCCCCCCC
Confidence            3 256889999999999999998 542   22 244567   99999887  557889999999999999853       


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.+++|++++..++++++++++++|+++++++
T Consensus       365 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          365 GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence            34699999998899999999999999998874

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.94  E-value=6.2e-26  Score=199.57  Aligned_cols=242  Identities=14%  Similarity=0.103  Sum_probs=177.2

Q ss_pred             cccCCCCCCceeecC----CCHHHHHHHHhcC----------CCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547          11 NEFGPHMPGYNIIPY----NDVDALEAKLKSN----------PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~----~d~~~l~~~l~~~----------~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      ..+...+.+++.++.    .|+++|++++++.          +++++|+++| ++|++|.+ ++.+.+++|+++|++||+
T Consensus       147 ~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~  225 (425)
T 2r2n_A          147 QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDF  225 (425)
T ss_dssp             HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCC
Confidence            334455677777775    3799999999631          3578888865 57777876 899999999999999999


Q ss_pred             EEEEeccccCcCCcCcc----cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          76 LFIADEVQTGLGRTGKL----LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~----~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      +||+||+|+++...|..    ..++..+..+.+.++||++++| +|+||+++++++++.+.......+++.+++++.++.
T Consensus       226 ~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~  304 (425)
T 2r2n_A          226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMIS  304 (425)
T ss_dssp             EEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHH
T ss_pred             EEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999999876444431    1222233445667799999999 999999999998887765555667788999999999


Q ss_pred             HHHHHHhh-------ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHH-HHHHHHHCC
Q psy6547         152 TALDVILE-------ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYD-VCIKMKDAG  223 (266)
Q Consensus       152 ~~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g  223 (266)
                      .+|+.+..       +.+.++++++++.+.+.|++.+.. ......+..|+   ++|+.++.  ..+..+ +.+.|.++|
T Consensus       305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~p~~g~---~~~~~~~~--~~~~~~~~~~~l~~~g  378 (425)
T 2r2n_A          305 QLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTG-LAEWHVPAAGM---FLWIKVKG--INDVKELIEEKAVKMG  378 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-SEEECCCSBSS---EEEEEETT--CSCCHHHHHTHHHHTT
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEeCCCceE---EEEEEeCC--CCCHHHHHHHHHHHCC
Confidence            88886432       234556666777777777652211 11111234677   89999875  334455 578888999


Q ss_pred             ceeccC---------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       224 i~~~~~---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |.+.|+         +.+++|++++. .+++++++++++|.+++++.
T Consensus       379 v~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          379 VLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence            999874         14799999763 59999999999999998763

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=5.8e-26  Score=198.67  Aligned_cols=228  Identities=17%  Similarity=0.155  Sum_probs=178.7

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcC
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTG   90 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g   90 (266)
                      +...+.+++.++++|+++|+++++++ ++++|++++++|++|.+.    ++++|+++|++||++||+||+|++  +++.|
T Consensus       160 ~~~~g~~~~~~~~~d~~~le~~l~~~-~~~~vi~~~~~nptG~~~----~l~~l~~la~~~~~~li~De~~~~g~~g~~g  234 (409)
T 3kki_A          160 ARYANAQAHPFMHNNCDHLRMLIQRH-GPGIIVVDSIYSTLGTIA----PLAELVNISKEFGCALLVDESHSLGTHGPNG  234 (409)
T ss_dssp             HHHTTCEEEEECTTCHHHHHHHHHHH-CSCEEEEESBCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTTTTTSSGGG
T ss_pred             HHHcCCeEEEecCCCHHHHHHHHHhc-CCeEEEECCCCCCCCCcC----CHHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence            34456788889999999999999653 368999999999999886    499999999999999999999977  66666


Q ss_pred             cccccccCCC--CcCe--eeecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhh-ccHH
Q psy6547          91 KLLAIHYEDV--RPDI--VILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILE-ENMI  163 (266)
Q Consensus        91 ~~~~~~~~~~--~~d~--~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~-~~~~  163 (266)
                      ..+. ...++  .+|+  .++||++++|   .|++++++++.+.+.....  ..+...+++.++++.++++.++. +++.
T Consensus       235 ~~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~  310 (409)
T 3kki_A          235 AGLL-AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRR  310 (409)
T ss_dssp             CCHH-HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             Ccch-hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHH
Confidence            5433 22333  3455  6699999966   5889999888776653211  12223677888888899988766 4688


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-------CCCCEEEE
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-------ISNNIIRL  236 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~iR~  236 (266)
                      ++++++++++.+.|++ ++..     ..+.+.   ++++.++.  ..+..+++++|+++||.+.+       .+.+++|+
T Consensus       311 ~~~~~~~~~l~~~L~~-~g~~-----~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi  379 (409)
T 3kki_A          311 QHLDRMARKLRIGLSQ-LGLT-----IRSESQ---IIGLETGD--ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRL  379 (409)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCC-----CCCSSS---EEEEEEES--HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHH-cCCc-----cCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEE
Confidence            8999999999999998 5422     224566   89999877  45677899999999999854       34579999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +++..++++++++++++|+++++.
T Consensus       380 ~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          380 SLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EccCCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999875

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.94  E-value=4.2e-26  Score=198.08  Aligned_cols=232  Identities=16%  Similarity=0.121  Sum_probs=175.4

Q ss_pred             CCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.+       |+++|++.++  ++++++++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++..
T Consensus       131 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  207 (389)
T 1gd9_A          131 AGGKPVEVPTYEEDEFRLNVDELKKYVT--DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIY  207 (389)
T ss_dssp             HTCEEEEEECCGGGTTCCCHHHHHHHCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCCEEEEeccCCccCCCCCHHHHHHhcC--cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence            45567777632       7899999994  468888888888888876 8999999999999999999999999988755


Q ss_pred             cCc-ccccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547          89 TGK-LLAIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---  159 (266)
Q Consensus        89 ~g~-~~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---  159 (266)
                      .|. ...+..+    +.+..+.++||+++ +| +|+||+++++++.+.+.......+++.+++.+.++.++|+....   
T Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  286 (389)
T 1gd9_A          208 DDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKA  286 (389)
T ss_dssp             TTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchH
Confidence            443 2222222    22344566999998 88 89999999998888776555566778889999988888875332   


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN  231 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~  231 (266)
                       +++.++++++++++.+.|++ ++....   ....|.   ++|+.++.. +.+..+++++|. ++||.+.++      +.
T Consensus       287 ~~~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~  358 (389)
T 1gd9_A          287 VEEMRKEYDRRRKLVWKRLNE-MGLPTV---KPKGAF---YIFPRIRDT-GLTSKKFSELMLKEARVAVVPGSAFGKAGE  358 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTCCCC---CCCBTT---EECCBCGGG-TCCHHHHHHHHHHHTCEECEEGGGGCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCeec---CCCeee---EEEEeccCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence             34667788888888888887 432222   223466   677777531 246788999998 899999875      25


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++|++++  .+++++++++++|.+++++.
T Consensus       359 ~~iRi~~~--~~~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          359 GYVRISYA--TAYEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             TBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence            79999966  49999999999999998763

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.93  E-value=7.9e-26  Score=199.25  Aligned_cols=236  Identities=12%  Similarity=0.075  Sum_probs=179.7

Q ss_pred             CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ...+.+++.++.+      |+++|++++++ +++++|+++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++.
T Consensus       151 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~  228 (437)
T 3g0t_A          151 RILGQKFESFDLFEYRGEKLREKLESYLQT-GQFCSIIYSNPNNPTWQC-MTDEELRIIGELATKHDVIVIEDLAYFGMD  228 (437)
T ss_dssp             HHHTCCCEEEEGGGGCTTHHHHHHHHHHTT-TCCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCC
T ss_pred             HHcCCEEEEEeecCCCCccCHHHHHHHHhc-CCceEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHCCcEEEEEcchhhcc
Confidence            3456778888764      78999999943 357777766668888876 899999999999999999999999998764


Q ss_pred             CcCcc---------ccccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhh-c-----------------cCCCCCCC
Q psy6547          88 RTGKL---------LAIHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMG-T-----------------LVPGTHGS  138 (266)
Q Consensus        88 ~~g~~---------~~~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~-~-----------------~~~~~~~~  138 (266)
                      ..+..         ..+.. .+....+.++||.++ +| +|+||+++++++.+ .                 +.......
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (437)
T 3g0t_A          229 FRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL  307 (437)
T ss_dssp             TTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH
T ss_pred             cCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh
Confidence            33221         12221 344455667999999 88 99999999999988 7                 66544556


Q ss_pred             CCCCcHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHhhcccccCCCc---ccEE-ecCccceeeEEEEeeCcc
Q psy6547         139 TYGGNPLACKLAMTALDVIL-----EENMIENAYKMGEIFRSELSSPANKSKAS---FKLS-SGGLKKSINTLILSVSAI  209 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~~~~  209 (266)
                      +++.+++++.++..+++...     -++..++++++++++.+.|++ ++.....   ...+ ..|.   ++|+.++.   
T Consensus       308 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~---~~~~~~~~---  380 (437)
T 3g0t_A          308 SSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-NGFNIVYDKDGNEPLADGF---YFTVGYKG---  380 (437)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-TTEEESSCEETTEECCSSS---EEEEEETT---
T ss_pred             cCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCEEeccccCCCCCceeE---EEEEecCC---
Confidence            77889999999999998765     346788888999999999988 4321110   0013 4567   88888862   


Q ss_pred             chHHHHHHHHHHCCceeccCCC------CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKPISN------NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~~~~------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .+..+++++|.++||.+.++..      +++|++++.. +++++++++++|.+++++
T Consensus       381 ~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          381 MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            4688999999999999987632      7899998844 999999999999998753

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.93  E-value=6.9e-27  Score=202.24  Aligned_cols=228  Identities=14%  Similarity=0.158  Sum_probs=172.2

Q ss_pred             CCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+.+++.++.     .|+++|++.++  +++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++...
T Consensus       130 ~~g~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  206 (376)
T 2dou_A          130 VASLRTFLIPLREDGLADLKAVPEGVW--REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYE  206 (376)
T ss_dssp             HTTCEEEEECBCTTSSBCGGGSCHHHH--HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred             HcCCEEEEeeCCCCCCCCHHHHHHhhc--cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence            34566777764     47889998884  368898888778888876 89999999999999999999999999887544


Q ss_pred             Ccccc-ccc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hccH
Q psy6547          90 GKLLA-IHY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENM  162 (266)
Q Consensus        90 g~~~~-~~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~  162 (266)
                      |.... ...   .+..+.+.++||+++ +| +|+||+++++++.+.+.......+++.++++++++.++|+...  -+..
T Consensus       207 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  285 (376)
T 2dou_A          207 GEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGY  285 (376)
T ss_dssp             SCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCCCChhhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHH
Confidence            43211 222   234456677999998 88 9999999999988877654445566778889888888886421  1345


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRL  236 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~  236 (266)
                      .++++++++++.+.|++ .    +.......|.   ++|+.++.  +.+..+++++|.++||.+.++      +.+++|+
T Consensus       286 ~~~~~~~~~~l~~~L~~-~----~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ri  355 (376)
T 2dou_A          286 ARVYRERALGMAEALKG-V----LSLLPPRATM---YLWGRLPE--GVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRI  355 (376)
T ss_dssp             HHHHHHHHHHHHHHHTT-T----SEECCCCBSS---EEEEECCT--TCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHH-h----cCccCCCeeE---EEEEECCC--CCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEE
Confidence            66777888888888877 3    2221123466   78888875  456788999999999999875      2579999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +++  .+++++++++++|++++
T Consensus       356 s~~--~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          356 ALV--RPLEELLEAAKRIREAL  375 (376)
T ss_dssp             ECC--SCHHHHHHHHHHHHHTC
T ss_pred             Eec--CCHHHHHHHHHHHHHHh
Confidence            966  48999999999998764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=2.3e-26  Score=200.37  Aligned_cols=240  Identities=18%  Similarity=0.180  Sum_probs=176.7

Q ss_pred             cCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.+    |+++|++.+++. ++++|+ ++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++.
T Consensus       132 ~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~  209 (397)
T 2zyj_A          132 FRLQGPRFLTVPAGEEGPDLDALEEVLKRE-RPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELY  209 (397)
T ss_dssp             HHTTCCEEEEEEEETTEECHHHHHHHHHHC-CCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred             HHHcCCEEEecCcCCCCCCHHHHHHHHhhc-CCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCccccc
Confidence            34456677777753    899999999643 467775 45567778876 899999999999999999999999998875


Q ss_pred             CcCcc-cccccC------CCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--
Q psy6547          88 RTGKL-LAIHYE------DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--  158 (266)
Q Consensus        88 ~~g~~-~~~~~~------~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--  158 (266)
                      ..|.. ..+..+      +....+.++||++++| +|+||+++++++.+.+.......+++.+++++.++..+|+...  
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  288 (397)
T 2zyj_A          210 FGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSE  288 (397)
T ss_dssp             CSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHH
T ss_pred             CCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHH
Confidence            54542 222222      2234466799999988 9999999999888877654444456678888888888776421  


Q ss_pred             -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------
Q psy6547         159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------  229 (266)
Q Consensus       159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------  229 (266)
                       -++..++++++++++.+.|++.++. .+....+..|.   ++|+.++.  +.+..+++++|.++||.+.++        
T Consensus       289 ~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~~~~~  362 (397)
T 2zyj_A          289 RLERVRRVYREKAQAMLHALDREVPK-EVRYTRPKGGM---FVWMELPK--GLSAEGLFRRALEENVAFVPGGPFFANGG  362 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCT-TSEECCCSBSS---EEEEECST--TCCHHHHHHHHHHTTEEEEESGGGCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEccCCccE---EEEEEcCC--CCCHHHHHHHHHHCCCEEechHHhcCCCC
Confidence             1345566667777777777762211 12221224567   89998875  456889999999999999874        


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ..+++|++++.. +++++++++++|.++++++.
T Consensus       363 ~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          363 GENTLRLSYATL-DREGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             CTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            357999998765 89999999999999988765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.8e-26  Score=202.22  Aligned_cols=218  Identities=17%  Similarity=0.236  Sum_probs=169.1

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc---c--ccCCC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA---I--HYEDV  100 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~---~--~~~~~  100 (266)
                      .|+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++.+.|....   +  ..++.
T Consensus       189 ~d~~~l~~~l--~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  265 (447)
T 3b46_A          189 IDFEQFEKAI--TSKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQL  265 (447)
T ss_dssp             ECHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTT
T ss_pred             cCHHHHHHhh--ccCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCc
Confidence            4789999998  3578999988888888876 8899999999999999999999999988755442212   1  12456


Q ss_pred             CcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHH
Q psy6547         101 RPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFR  174 (266)
Q Consensus       101 ~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~  174 (266)
                      ++.+.++||+++ +| +|+||+++ ++++++.+....+..+++.+++.+.++.++|+....    +++.++++++++++.
T Consensus       266 ~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~  344 (447)
T 3b46_A          266 TLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFT  344 (447)
T ss_dssp             EEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence            777888999999 89 99999999 999888776544556778889999998888887532    346777888888888


Q ss_pred             HHhhcccccCCCcccEEecCccceeeEEEEeeCc-------------cchHHHHHHHHH-HCCceeccCC----------
Q psy6547         175 SELSSPANKSKASFKLSSGGLKKSINTLILSVSA-------------ILEVYDVCIKMK-DAGLVTKPIS----------  230 (266)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~l~-~~gi~~~~~~----------  230 (266)
                      +.|++ ++.   ....+..|.   ++|+.++...             ..+..+++++|. ++||.+.|+.          
T Consensus       345 ~~L~~-~g~---~~~~~~~g~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~  417 (447)
T 3b46_A          345 SIFDE-LGL---PYTAPEGTY---FVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKA  417 (447)
T ss_dssp             HHHHH-HTC---CEECCSBSS---EEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGG
T ss_pred             HHHHH-CCC---eecCCCeeE---EEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCC
Confidence            88887 532   221234577   8888876410             135678999887 6899998752          


Q ss_pred             -CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         231 -NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       231 -~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                       .+++|++++  .+++++++++++|++
T Consensus       418 ~~~~iRls~~--~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          418 AENLLRFAVC--KDDAYLENAVERLKL  442 (447)
T ss_dssp             GTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred             CCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence             689999965  589999999999986

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.93  E-value=1.4e-25  Score=192.28  Aligned_cols=230  Identities=16%  Similarity=0.110  Sum_probs=177.4

Q ss_pred             cccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ..+...+.+++.++.+     |+++|++.+++++++++|++++++|++|.+ ++.+.+++|+++| +||+++|+||+|++
T Consensus       107 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~  184 (354)
T 3ly1_A          107 HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI-TPADVIEPWIASK-PANTMFIVDEAYAE  184 (354)
T ss_dssp             HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCC-CCHHHHHHHHHTC-CTTEEEEEECTTGG
T ss_pred             HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEeccHHH
Confidence            3344567788999887     899999999643578999988888888877 7888888888888 79999999999988


Q ss_pred             cCCcCcccc----cccC-CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          86 LGRTGKLLA----IHYE-DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        86 ~~~~g~~~~----~~~~-~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      +...+....    .... +....+.++||+++ +| +|+||+++++++.+.+.....  .++.+++++.++.++++..+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~  261 (354)
T 3ly1_A          185 FVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAF  261 (354)
T ss_dssp             GCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHH
T ss_pred             hccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHH
Confidence            755443211    1222 44456667999998 88 999999999999888875333  378899999998888874321


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec---cCCCCEEE
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK---PISNNIIR  235 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~~~~~~iR  235 (266)
                       ++..++++++++++.+.|++ .+   +.. .++.|.   ++++.++.    +..++.+.|.++||.+.   ....+++|
T Consensus       262 ~~~~~~~~~~~~~~l~~~l~~-~~---~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~gi~v~g~~~~~~~~iR  329 (354)
T 3ly1_A          262 ITYSKKSNDVSRQILLKALED-LK---LPY-LPSEGN---FVFHQLVV----PLKDYQTHMADAGVLIGRAFPPADNWCR  329 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HT---CCB-CCCCSS---EEEEECSS----CHHHHHHHHHHTTEECCCCCTTCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CC---CeE-CCCCce---EEEEECCC----CHHHHHHHHHHCCEEEeecCCCCCCEEE
Confidence             45677788888888888887 43   232 334677   88888875    57889999999999988   12468999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++++   +++++++++++|++++++
T Consensus       330 is~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          330 ISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             EECC---CHHHHHHHHHHHHHHHHT
T ss_pred             EEcC---CHHHHHHHHHHHHHHHHh
Confidence            9943   899999999999998865

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.93  E-value=6.5e-26  Score=196.81  Aligned_cols=234  Identities=12%  Similarity=0.112  Sum_probs=175.8

Q ss_pred             CCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.++.+       |+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++.
T Consensus       133 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~  209 (388)
T 1j32_A          133 LAEGTPVILPTTVETQFKVSPEQIRQAI--TPKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKIL  209 (388)
T ss_dssp             HTTCEEEEECCCGGGTTCCCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred             HcCCEEEEecCCcccCCCCCHHHHHHhc--CcCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence            345677777753       789999999  3468999888888888877 789999999999999999999999998875


Q ss_pred             CcCcc----ccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--
Q psy6547          88 RTGKL----LAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--  158 (266)
Q Consensus        88 ~~g~~----~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--  158 (266)
                      ..|..    ..+..  .+.++.+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++.++|+...  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  288 (388)
T 1j32_A          210 YDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDC  288 (388)
T ss_dssp             CTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHH
T ss_pred             cCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHH
Confidence            54431    11111  345667788999998 88 9999999999888777654455677788888888888886321  


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccCC----CCE
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPIS----NNI  233 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~----~~~  233 (266)
                      -+++.++++++++++.+.|++ +.  .+.......+.   ++|+.++.. +.+..+++++|.+ +||.+.++.    .++
T Consensus       289 ~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~  361 (388)
T 1j32_A          289 VQEMLAAFAERRRYMLDALNA-MP--GLECPKPDGAF---YMFPSIAKT-GRSSLDFCSELLDQHQVATVPGAAFGADDC  361 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-CT--TCBCCCCCBTT---EECCBCGGG-TCCHHHHHHHHHHHHCEECEEGGGGTCTTB
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CC--CCcccCCCeeE---EEEEecCCC-CCCHHHHHHHHHHhCCEEEeChhhhCCCCc
Confidence            134677788888899999887 52  22221122355   666666431 2367889999986 799998752    589


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +|++++  ++++++++++++|.++++++
T Consensus       362 iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          362 IRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             EEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            999965  79999999999999998764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.93  E-value=7.8e-26  Score=196.27  Aligned_cols=231  Identities=13%  Similarity=0.125  Sum_probs=174.3

Q ss_pred             cCCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          13 FGPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        13 ~~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      +...+.+++.++.      .|+++|++.+  .++++++++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++
T Consensus       132 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~l--~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~  208 (386)
T 1u08_A          132 IALSGGIVKRMALQPPHFRVDWQEFAALL--SERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHI  208 (386)
T ss_dssp             HHHTTCEEEEEECCTTTCCCCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTC
T ss_pred             HHHcCCEEEEeecCcccCcCCHHHHHHhh--cccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence            3445667777775      3799999999  4578999988888888876 89999999999999999999999999887


Q ss_pred             CCcCcc---c-ccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--
Q psy6547          87 GRTGKL---L-AIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--  158 (266)
Q Consensus        87 ~~~g~~---~-~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--  158 (266)
                      ...|..   + .+. ..+.++.+.++||+++ +| +|+||+++++++.+.+.......+++.+++.+.++..+|+...  
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  287 (386)
T 1u08_A          209 NFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEH  287 (386)
T ss_dssp             BCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHH
T ss_pred             ccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHH
Confidence            554431   1 121 2355667778999999 88 9999999999988877654444567788888888888887532  


Q ss_pred             hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--------
Q psy6547         159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI--------  229 (266)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~--------  229 (266)
                      -+++.++++++++++.+.|++ .+   +.......|.   ++|+.++.....+..+++++|. ++||.+.++        
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~  360 (386)
T 1u08_A          288 YLALPDFYRQKRDILVNALNE-SR---LEILPCEGTY---FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPF  360 (386)
T ss_dssp             HHTHHHHHHHHHHHHHHHTTS-SS---CEECCCCBSS---EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCceE---EEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCC
Confidence            145778888888888888887 43   2221223467   8888886510136788999886 689999864        


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +.+++|++++  .+++++++++++|++
T Consensus       361 ~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          361 PHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             CSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence            3578999965  589999999999864

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.93  E-value=3.3e-24  Score=185.59  Aligned_cols=231  Identities=13%  Similarity=0.092  Sum_probs=176.8

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+++++++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.+ .. 
T Consensus       117 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~~~-~~-  190 (386)
T 2dr1_A          117 NGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN----PLPELAKVAKEHDKLVFVDAVSAMG-GA-  190 (386)
T ss_dssp             TTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC----CHHHHHHHHHHTTCEEEEECTTTBT-TB-
T ss_pred             hCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC----CHHHHHHHHHHcCCeEEEEcccccc-Cc-
Confidence            4566777775     58999999996555789999999999999885    6899999999999999999999633 21 


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC------------------CCCCCCCCcHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG------------------THGSTYGGNPLACKLA  150 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~a~  150 (266)
                       .+....+  .+|+++  +||+++++ .++|++++++++.+.+...                  ....+++.+++.++++
T Consensus       191 -~~~~~~~--~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  266 (386)
T 2dr1_A          191 -DIKFDKW--GLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGI  266 (386)
T ss_dssp             -CCCTTTT--TCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHH
T ss_pred             -ccccccc--CCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHH
Confidence             1223333  345555  66999976 5689999999888766421                  1244567788889999


Q ss_pred             HHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         151 MTALDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       151 ~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      ..+++.+...    ++.++++++++++.+.|++ ++...........+.   ++++.++.  +.+..+++++|.++||.+
T Consensus       267 ~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~v  340 (386)
T 2dr1_A          267 NVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-IGLDILAEPGHESPT---ITAVLTPP--GIKGDEVYEAMRKRGFEL  340 (386)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-TTCCBSSCTTCBCSS---EEEEECCT--TCCHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-cCCeeCcCccccCCc---eEEEEcCC--CCCHHHHHHHHHHCCeEE
Confidence            9999887654    5788889999999999988 442222110011456   88998875  456889999999999999


Q ss_pred             ccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         227 KPI----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       227 ~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .++    ..+++|++++..++++++++++++|+++++++.
T Consensus       341 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          341 AKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK  380 (386)
T ss_dssp             EECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            875    357999999888999999999999999988764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.93  E-value=3.5e-25  Score=194.90  Aligned_cols=242  Identities=13%  Similarity=0.115  Sum_probs=178.9

Q ss_pred             cccCC-CCCCceeecC------CCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHh-----cCCEE
Q psy6547          11 NEFGP-HMPGYNIIPY------NDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-----YNVLF   77 (266)
Q Consensus        11 ~~~~~-~~~~v~~~~~------~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~-----~g~~l   77 (266)
                      ..+.. .+.+++.++.      .|+++|++.+++.+ ++++++++.++|++|.+ ++.+.+++|+++|++     ||+++
T Consensus       152 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~l  230 (430)
T 2x5f_A          152 LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIA  230 (430)
T ss_dssp             HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEE
Confidence            33455 6777777774      36899999996532 67887776668888876 899999999999999     99999


Q ss_pred             EEeccccCcCCcCcc-c----cccc-CCC---CcCeeeeccccc-CCchhhhhhee---cHHhhhccCCCCCC----CCC
Q psy6547          78 IADEVQTGLGRTGKL-L----AIHY-EDV---RPDIVILGKALS-GGLYPISAVLA---DDEVMGTLVPGTHG----STY  140 (266)
Q Consensus        78 i~De~~~~~~~~g~~-~----~~~~-~~~---~~d~~~~sK~~~-~g~~~~g~~~~---~~~~~~~~~~~~~~----~~~  140 (266)
                      |+||+|+++...|.. .    .+.. .+.   ...+.++||+++ +| +|+||+++   ++++.+.+......    .++
T Consensus       231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~  309 (430)
T 2x5f_A          231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNIS  309 (430)
T ss_dssp             EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTS
T ss_pred             EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHHHhhhhhcccC
Confidence            999999887554431 1    1211 222   233556999998 88 99999999   98888777643333    567


Q ss_pred             CCcHHHHHHHHHHHH-HH---hh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         141 GGNPLACKLAMTALD-VI---LE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~-~~---~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      +.+++++.++..+|+ ..   +. +...++++++++++.+.|++.+....+.......|.   ++|+.++.   .+..++
T Consensus       310 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~---~~~~~~~~---~~~~~~  383 (430)
T 2x5f_A          310 SGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGY---FMAIKVHD---VDPEAL  383 (430)
T ss_dssp             SCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSS---EEEEEESS---SCHHHH
T ss_pred             CCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceE---EEEeCCCC---CCHHHH
Confidence            889999999998887 32   21 236777888888888888842111122221223456   78888862   467889


Q ss_pred             HHHHHH-CCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKD-AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       216 ~~~l~~-~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +++|.+ +||.+.++..+++|++++. .+++++++++++|+++++++
T Consensus       384 ~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          384 RKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             HHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence            999997 9999999877899999885 59999999999999998764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.93  E-value=1.2e-24  Score=191.88  Aligned_cols=241  Identities=15%  Similarity=0.084  Sum_probs=173.1

Q ss_pred             ccccC-CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547          10 YNEFG-PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus        10 ~~~~~-~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ...+. ..+.+++.++++       |+++|++++++    ..++++|++++++|++|.+ ++.+.+++|+++|++||+++
T Consensus       149 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~l  227 (435)
T 3piu_A          149 DRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT-MTRNELYLLLSFVEDKGIHL  227 (435)
T ss_dssp             HHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEE
Confidence            33444 567788888875       79999999965    2368998888888888876 89999999999999999999


Q ss_pred             EEeccccCcCCcCcccc-ccc----CCCC-----cC----eeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCC
Q psy6547          78 IADEVQTGLGRTGKLLA-IHY----EDVR-----PD----IVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYG  141 (266)
Q Consensus        78 i~De~~~~~~~~g~~~~-~~~----~~~~-----~d----~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~  141 (266)
                      |+||+|+++.+.|..+. ...    .+.+     ++    +.++||+++ +| +|+||+++ ++.+.+.+..  ....+.
T Consensus       228 i~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~  304 (435)
T 3piu_A          228 ISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--MSSFGL  304 (435)
T ss_dssp             EEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--HGGGSC
T ss_pred             EEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--HhhcCC
Confidence            99999988644443221 111    1111     22    566999998 88 99999998 5566655542  334456


Q ss_pred             CcHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----cchH
Q psy6547         142 GNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----ILEV  212 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~  212 (266)
                      .++++++++.++++..+.     ++..++++++++++.+.|++ .+   +.......|.   ++|+.++...    ..+.
T Consensus       305 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~g~---~~~~~l~~~~~~~~~~~~  377 (435)
T 3piu_A          305 VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SG---ISCLNGNAGL---FCWVDMRHLLRSNTFEAE  377 (435)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT---CEECCCCSSS---EEEEECGGGSSSSSHHHH
T ss_pred             CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC---CcccCCCeeE---EEEEEcccccccCCchhH
Confidence            678888887777763321     34566777788888888877 43   2221223457   8999887611    0146


Q ss_pred             HHHHHHHHHC-CceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         213 YDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       213 ~~~~~~l~~~-gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+++++|+++ ||.+.++      +.+++|++++.. +++++++++++|.++++++.
T Consensus       378 ~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          378 MELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             HHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence            6889999877 9999873      468999997655 99999999999999988753

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.93  E-value=1.4e-25  Score=197.09  Aligned_cols=241  Identities=15%  Similarity=0.134  Sum_probs=173.9

Q ss_pred             CCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHH-HhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~g~~li~De~~~~~~   87 (266)
                      ...+.+++.++.+    |+++|++++++.+++++|+++| ++|++|.+ ++.+.+++|+++| ++||+++|+||+|..+.
T Consensus       142 ~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~~li~De~y~~~~  220 (423)
T 3ez1_A          142 QTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGET-ISLEKARRLAGLQAAAPDFTIFADDAYRVHH  220 (423)
T ss_dssp             HHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCC-CCHHHHHHHHTCCCSSTTCEEEEECTTSSCB
T ss_pred             HHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHhccCCEEEEECCcchhh
Confidence            3445677777753    8999999996456899998886 56667766 8999999999999 99999999999997432


Q ss_pred             CcC---c-c---ccc----ccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH
Q psy6547          88 RTG---K-L---LAI----HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        88 ~~g---~-~---~~~----~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  156 (266)
                      ..+   . .   +.+    +..+....+.++||++.+| +|+||+++++++.+.+.......+++++++.+.++..+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          221 LVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             CCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHh
Confidence            222   1 1   111    1334556677899997789 99999999999888877655667788899999888888775


Q ss_pred             -Hh---h--ccHHHHHHHHHHHHHHHhhcccccCC--CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         157 -IL---E--ENMIENAYKMGEIFRSELSSPANKSK--ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       157 -~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                       ..   .  +...+.++++.+.+.+.|.+.+....  +....+..|+   ++|+.++.  . +.+++.+.|.++||.+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~---~~~~~~~~--~-~~~~~~~~l~~~gv~v~~  373 (423)
T 3ez1_A          300 YPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGY---FISLDTAE--P-VADRVVKLAEAAGVSLTP  373 (423)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSS---CEEEEESS--S-CHHHHHHHHHHTTEECCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccE---EEEEECCC--C-cHHHHHHHHHHCCcEEec
Confidence             11   1  12333444455555555544232211  2211234677   89999876  3 577899999999999998


Q ss_pred             C----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         229 I----------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       229 ~----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +          ..+++|++++.. +++++++++++|.+++++...
T Consensus       374 ~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  417 (423)
T 3ez1_A          374 AGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLATE  417 (423)
T ss_dssp             TTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            2          258999998655 999999999999999987654

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.93  E-value=5.7e-26  Score=198.90  Aligned_cols=232  Identities=14%  Similarity=0.164  Sum_probs=173.5

Q ss_pred             CCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.+       |+++|++.++  +++++|+++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++..
T Consensus       143 ~g~~~~~~~~~~~~~~~~d~~~l~~~i~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  219 (412)
T 2x5d_A          143 AGAQVRSVPLVPGIDFFNELERAIRESI--PKPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVY  219 (412)
T ss_dssp             HTCEEEEEECSTTSCHHHHHHHHHHTEE--SCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             cCCEEEEeecCCccCCCCCHHHHHHhcc--cCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            45567777654       4677888774  457788876667888876 8999999999999999999999999988755


Q ss_pred             cCc-cccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547          89 TGK-LLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--E  160 (266)
Q Consensus        89 ~g~-~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~  160 (266)
                      .|. ...+..    .+.++.+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++..+|+....  +
T Consensus       220 ~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  298 (412)
T 2x5d_A          220 DGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVR  298 (412)
T ss_dssp             TTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHH
T ss_pred             CCCCCCChhhccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHH
Confidence            443 112221    234555677999998 89 89999999999888776544455678899999988888864321  4


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccc---hHHHHHHHHHH-CCceeccC------C
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAIL---EVYDVCIKMKD-AGLVTKPI------S  230 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~l~~-~gi~~~~~------~  230 (266)
                      ++.++++++++++.+.|++ .+....   ....|.   ++|+.++.  +.   +..+++++|.+ +||.+.++      +
T Consensus       299 ~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~g~---~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~  369 (412)
T 2x5d_A          299 DIARQYQQRRDVLVKGLRE-AGWMVE---NPKASM---YVWAKIPE--PYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYG  369 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCCCC---CCSBSS---EEEEECCT--TTGGGCHHHHHHHHHHHHCEECEEGGGGCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCEec---CCCeee---EEEEEcCC--ccCCCCHHHHHHHHHHHCCEEEeCchhhCCCC
Confidence            5677788888889888887 432221   223466   78888865  33   57889999875 69999875      2


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+++|++++.  +++++++++++|.+++++..
T Consensus       370 ~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~  399 (412)
T 2x5d_A          370 DDHVRFALIE--NRDRLRQAVRGIKAMFRADG  399 (412)
T ss_dssp             TTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence            5799999774  89999999999999988753

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.93  E-value=4.9e-25  Score=189.90  Aligned_cols=234  Identities=12%  Similarity=0.072  Sum_probs=179.5

Q ss_pred             CcCcccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li   78 (266)
                      ++.....+...+.+++.++.+     |+++|++.++++ ++++|++++++|++|.+ ++.+.+++|+++|++|  |+++|
T Consensus       119 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li  196 (367)
T 3euc_A          119 FVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEH-QPAIVYLAYPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVV  196 (367)
T ss_dssp             SCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHH-CCSEEEEESSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEE
T ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhcc-CCCEEEEcCCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEE
Confidence            334444455667788888843     899999999542 57888888888888876 7999999999999999  99999


Q ss_pred             EeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          79 ADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        79 ~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +||+|++|...+........+..+.+.++||+..+| +|+||+++++++.+.+..  ...+++.+++++.++..+++..+
T Consensus       197 ~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~  273 (367)
T 3euc_A          197 VDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDK--VRPPYNVNVLTEATALFALEHVA  273 (367)
T ss_dssp             EECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGG--GCCSSCCCHHHHHHHHHHHTTHH
T ss_pred             EeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHH--hCCCCCCCHHHHHHHHHHhcCHH
Confidence            999998875443333344455566777899994488 899999999998888764  33467789999999998887622


Q ss_pred             h-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------C
Q psy6547         159 E-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------N  231 (266)
Q Consensus       159 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~  231 (266)
                      . ++..++++++++++.+.|++ +.  .+.. .++.|.   ++++.++     +..++.+.|.++||.++++.      .
T Consensus       274 ~~~~~~~~~~~~~~~l~~~l~~-~~--g~~~-~~~~~~---~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~~~~~  341 (367)
T 3euc_A          274 VLDEQAAQLRAERSRVAEGMAA-HG--GVTV-FPSAAN---FLLARVP-----DAAQTFDRLLARKVLIKNVSKMHPLLA  341 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-ST--TCEE-CCCSSS---EEEEECS-----CHHHHHHHHHTTTEECEECGGGCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CC--CcEE-CCCCCe---EEEEECC-----CHHHHHHHHHHCCeEEEECCccCCCCC
Confidence            1 45677788888888888887 42  2332 345577   8888775     46789999999999998753      4


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +++|++++   +++++++++++|+++++
T Consensus       342 ~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          342 NCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             TEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            89999944   99999999999998753

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.93  E-value=2e-26  Score=201.41  Aligned_cols=232  Identities=15%  Similarity=0.110  Sum_probs=173.9

Q ss_pred             CCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          14 GPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        14 ~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ...+.+++.++.      .|+++|++.++  +++++|+++.++|++|.+ ++.+++++|+++|++||+++|+||+|+++.
T Consensus       151 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~  227 (404)
T 2o1b_A          151 LLADGKPVPLNLEPPHYLPDWSKVDSQII--DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFG  227 (404)
T ss_dssp             HHTTCEEEEEECCTTTCCCCGGGSCHHHH--HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCB
T ss_pred             HHCCCEEEEeccCcccCcCCHHHHHHhhc--cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence            334566777764      36888988884  468899888778888876 899999999999999999999999998875


Q ss_pred             CcCccccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hc
Q psy6547          88 RTGKLLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EE  160 (266)
Q Consensus        88 ~~g~~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~  160 (266)
                      ..|.......    .+.++.+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++.++|+...  -+
T Consensus       228 ~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  306 (404)
T 2o1b_A          228 FDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLE  306 (404)
T ss_dssp             SSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             cCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHH
Confidence            4443222211    123455677999998 88 8999999999988877654445567788999999888887521  13


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CCCE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SNNI  233 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~  233 (266)
                      +..++++++++++.+.|++ ++   +.......|.   ++|+.++.  +.+..+++++|+ ++||.+.++      +.++
T Consensus       307 ~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~g~---~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~  377 (404)
T 2o1b_A          307 EQSNVFKTRRDRFEAMLAK-AD---LPFVHAKGGI---YVWLETPP--GYDSEQFEQFLVQEKSILVAPGKPFGENGNRY  377 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT---CCEECCCBSS---EEEEECCT--TCCHHHHHHHHHHHHCEECEESGGGCGGGTTE
T ss_pred             HHHHHHHHHHHHHHHHHHh-cC---CeecCCCcce---EEEEeCCC--CCCHHHHHHHHHHHCCEEEeCchhhCcCCCCe
Confidence            4667777888888888887 42   2221122466   78888875  456788999987 579999875      2579


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|++++.  +++++++++++|.+++++
T Consensus       378 iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          378 VRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             EEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             EEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            9999774  788999999999987754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=7.9e-26  Score=196.64  Aligned_cols=228  Identities=20%  Similarity=0.185  Sum_probs=173.1

Q ss_pred             CCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          14 GPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ...+.+++.++.+       |+++|+++++  +++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++
T Consensus       143 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~  219 (389)
T 1o4s_A          143 ILAGGTVNVVETFMSKNFQPSLEEVEGLLV--GKTKAVLINSPNNPTGVV-YRREFLEGLVRLAKKRNFYIISDEVYDSL  219 (389)
T ss_dssp             HHTTCEEEEEECCGGGTTCCCHHHHHHTCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred             HHcCCEEEEEecCCccCCCCCHHHHHHhcc--cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            3456677777753       7899999983  468888888888888876 88999999999999999999999999877


Q ss_pred             CCcCccccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          87 GRTGKLLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        87 ~~~g~~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      ...|.......    .+.+..+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++..+|+.. .++
T Consensus       220 ~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~  297 (389)
T 1o4s_A          220 VYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSY  297 (389)
T ss_dssp             BCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHH
T ss_pred             ccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHH
Confidence            54443222211    234455667999998 88 899999999988877765444456777888888887777532 355


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC----CCEEEE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS----NNIIRL  236 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~iR~  236 (266)
                      +.++++++++++.+.|++ ++....   ....|.   ++++.++    .+..+++++|+ ++||.+.++.    .+++|+
T Consensus       298 ~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ri  366 (389)
T 1o4s_A          298 MVQTFKERKNFVVERLKK-MGVKFV---EPEGAF---YLFFKVR----GDDVKFCERLLEEKKVALVPGSAFLKPGFVRL  366 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCCCC---CCSBSS---EEEEECS----SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCeee---cCCcce---EEEEeCC----CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEE
Confidence            788888999999999988 532222   122456   7777775    25678999997 8899998752    479999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHH
Q psy6547         237 SPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       237 ~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +++  .+++++++++++|.++++
T Consensus       367 s~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          367 SFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             ECC--SCHHHHHHHHHHHHHHHT
T ss_pred             EEe--CCHHHHHHHHHHHHHHHh
Confidence            976  499999999999998874

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.93  E-value=2.7e-25  Score=192.80  Aligned_cols=238  Identities=14%  Similarity=0.155  Sum_probs=177.2

Q ss_pred             cCCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          13 FGPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        13 ~~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +...+.+++.++.        .|+++|++++++ +++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+
T Consensus       126 ~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~  203 (391)
T 3dzz_A          126 IEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNPHNPIGYA-WSEEEVKRIAELCAKHQVLLISDEIHG  203 (391)
T ss_dssp             HHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCCEEEEecccc
Confidence            3445677788776        589999999953 478999888888888876 899999999999999999999999998


Q ss_pred             CcCCcCc-ccccccCCC-CcC----eeeeccccc-CCchhhhhheec-HHhhhccCCCC-CCCCCCCcHHHHHHHHHHHH
Q psy6547          85 GLGRTGK-LLAIHYEDV-RPD----IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGT-HGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        85 ~~~~~g~-~~~~~~~~~-~~d----~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~  155 (266)
                      ++.+.|. .......+. .+|    +.++||+++ +| +|+||++++ +++.+.+.... ...+++.+++++.++..+++
T Consensus       204 ~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  282 (391)
T 3dzz_A          204 DLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYE  282 (391)
T ss_dssp             TCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHH
T ss_pred             cccCCCCCceehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence            8766553 223333221 255    556999998 88 899999997 88877776432 23456788888888888887


Q ss_pred             HHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC--
Q psy6547         156 VIL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS--  230 (266)
Q Consensus       156 ~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~--  230 (266)
                      ...  .++..++++++++++.+.|++.++  .+.......+.   ++++.++.. +.+..+++++|+ ++||.++++.  
T Consensus       283 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~  356 (391)
T 3dzz_A          283 EGHDWLRELKQVLRDNFAYAREFLAKEVP--EVKVLDSNASY---LAWVDISAL-GMNAEDFCKYLREKTGLIISAGNGY  356 (391)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSEECCCCBSS---EEEEECGGG-CSCHHHHHHHHHHHHCEECEESGGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhCC--CcEEeccCceE---EEEEehhhc-CCCHHHHHHHHHHhCCEEEeCchhh
Confidence            632  245677788888888888876222  22221223455   667777641 246889999996 8999998752  


Q ss_pred             ----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 ----NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                          .+++|++++  ++++++++++++|.++++++
T Consensus       357 ~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          357 RGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             CTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence                389999966  69999999999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.93  E-value=8.8e-25  Score=190.47  Aligned_cols=232  Identities=19%  Similarity=0.256  Sum_probs=181.2

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcC-C---CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcC
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSN-P---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~-~---~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~   87 (266)
                      ....+.+++.++++|+++|++++++. +   ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++.
T Consensus       146 ~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~li~De~~~~g~~  221 (401)
T 1fc4_A          146 VRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFV  221 (401)
T ss_dssp             HHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC----CHHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred             HHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCC----CHHHHHHHHHHcCCEEEEECccccccc
Confidence            34457788899999999999999642 1   578999999999999885    49999999999999999999994 763


Q ss_pred             -CcCcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          88 -RTGKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        88 -~~g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                       +.|..+. ...++  ..|++  ++||+++++ . .||+++++++++.+....  ...+++.+++.++++.++++.+.. 
T Consensus       222 ~~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~-~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  298 (401)
T 1fc4_A          222 GENGRGSH-EYCDVMGRVDIITGTLGKALGGA-S-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAG  298 (401)
T ss_dssp             STTSCCHH-HHTTCTTCCSEEEEESSSTTCSS-S-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCccH-HHcCCCcCCcEEEecchhhccCC-C-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcC
Confidence             3454321 11222  23555  699999766 4 599999998887776422  223567899999999999988764 


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------CC
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------NN  232 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~  232 (266)
                      +++.++++++++++.+.|++ ++.   .. ..+.|.   ++++.++.  +.+..+++++|.++||.+.++.       .+
T Consensus       299 ~~~~~~~~~~~~~l~~~L~~-~g~---~~-~~~~~~---~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~  368 (401)
T 1fc4_A          299 SELRDRLWANARQFREQMSA-AGF---TL-AGADHA---IIPVMLGD--AVVAQKFARELQKEGIYVTGFFYPVVPKGQA  368 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTC---CB-CCSSSS---EEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTSSCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCC---cc-cCCCCC---EEEEEcCC--hHHHHHHHHHHHHCCcEEeeecCCCCCCCCc
Confidence            56889999999999999988 532   22 234577   99999875  4568889999999999998752       35


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++|++++..++++++++++++|+++++++
T Consensus       369 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          369 RIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999988899999999999999998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.93  E-value=1.4e-25  Score=195.05  Aligned_cols=237  Identities=14%  Similarity=0.126  Sum_probs=173.9

Q ss_pred             ccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          12 EFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .+...+.+++.++.+       |+++|++.     ++++|++++++|++|.+ ++.+.+++|+++|++||+++|+||+|+
T Consensus       131 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-----~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~  204 (391)
T 3h14_A          131 ILRALGLVPVDLPTAPENRLQPVPADFAGL-----DLAGLMVASPANPTGTM-LDHAAMGALIEAAQAQGASFISDEIYH  204 (391)
T ss_dssp             HHHHTTCEEEEEECCGGGTTSCCHHHHTTS-----CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHcCCEEEEeecCcccCCCCCHHHHHhc-----CCeEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            344557778888765       66666544     57888888888888876 899999999999999999999999998


Q ss_pred             CcCCcCcccccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hcc
Q psy6547          85 GLGRTGKLLAIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EEN  161 (266)
Q Consensus        85 ~~~~~g~~~~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~  161 (266)
                      ++...|...... ..+....+.++||.++ +| +|+||+++++++.+.+.......+++++++++.++.++++..+ -++
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  283 (391)
T 3h14_A          205 GIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQA  283 (391)
T ss_dssp             TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHH
Confidence            876555432222 2233445557999998 89 9999999999888877655556677888999888888876211 134


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC-------CCCE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI-------SNNI  233 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-------~~~~  233 (266)
                      ..++++++++.+.+.|++ ++...+.  ....+.   ++++.++.. +.+..+++++|+++ ||.+.++       ..++
T Consensus       284 ~~~~~~~~~~~l~~~l~~-~~~~~~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~  356 (391)
T 3h14_A          284 NLDVYKANRKLMLERLPK-AGFTRIA--PPDGAF---YVYADVSDL-TDDSRAFAAEILEKAGVAVTPGLDFDPERGAGT  356 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTCCCBC--CCCBTT---EEEEECTTT-CSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGE
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCccc--CCCeeE---EEEEecCcc-CCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCe
Confidence            667777888888888887 5432211  223356   777777531 24678899998875 9999874       2579


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         234 IRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +|++++.  +++++++++++|++++++..++
T Consensus       357 iRis~~~--~~~~i~~~l~~l~~~~~~~~~~  385 (391)
T 3h14_A          357 LRFSYAR--ATADIEEGLDRLEAFMQARGEG  385 (391)
T ss_dssp             EEEECCS--CHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEecC--CHHHHHHHHHHHHHHHHHhccc
Confidence            9999664  8999999999999999887654

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.93  E-value=2.1e-25  Score=193.63  Aligned_cols=233  Identities=18%  Similarity=0.171  Sum_probs=171.1

Q ss_pred             cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +...+.+++.++.       .|+++|++++  .+++++|+++.++|++|.+ ++.+.+++|.++|++||++||+||+|+.
T Consensus       132 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  208 (385)
T 1b5p_A          132 VRFAGGVVVEVETLPEEGFVPDPERVRRAI--TPRTKALVVNSPNNPTGAV-YPKEVLEALARLAVEHDFYLVSDEIYEH  208 (385)
T ss_dssp             HHHTTCEEEEEECCGGGTTCCCHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHHcCCEEEEeecCcccCCCCCHHHHHHhc--CCCCEEEEEeCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEccchh
Confidence            3445667777775       2688999888  3468888887778888876 8999999999999999999999999987


Q ss_pred             cCCcCcccccccC--CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH---Hhh
Q psy6547          86 LGRTGKLLAIHYE--DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV---ILE  159 (266)
Q Consensus        86 ~~~~g~~~~~~~~--~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~  159 (266)
                      +...|....+..+  +....+.++||.++ +| +|+||+++++++.+.+.......+++.+.+.+.++.++|+.   ...
T Consensus       209 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  287 (385)
T 1b5p_A          209 LLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRA  287 (385)
T ss_dssp             CBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHH
T ss_pred             cccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchH
Confidence            6443322222222  23344556999998 78 99999999998887776544445667788888888888853   222


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCE
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNI  233 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~  233 (266)
                        ++..++++++++++.+.|++ ++....   .+..+.   ++|+.++.. +.+..+++++|.++||.+.++.    .++
T Consensus       288 ~~~~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~~~~~~~~~-~~~~~~l~~~l~~~gv~v~~g~~f~~~~~  359 (385)
T 1b5p_A          288 FVEMAREAYRRRRDLLLEGLTA-LGLKAV---RPSGAF---YVLMDTSPI-APDEVRAAERLLEAGVAVVPGTDFAAFGH  359 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HTCCBC---CCSBTT---EEEEECTTT-CSSHHHHHHHHHHTTEECEESGGGTCTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CCCeec---CCCeeE---EEEEecCCC-CCCHHHHHHHHHHCCeEEecccccCCCCe
Confidence              34677788888888888887 432211   223455   677777521 3467889999999999998762    479


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +|++..  ++++++++++++|.++++
T Consensus       360 iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          360 VRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             EEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             EEEEec--CCHHHHHHHHHHHHHHHh
Confidence            999954  799999999999987654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.93  E-value=4.2e-25  Score=190.09  Aligned_cols=223  Identities=11%  Similarity=0.079  Sum_probs=168.3

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.+     |++++++.+  .++++++++++++|++|.+ ++.+.+.++++.|++ |+++|+||+|+++.
T Consensus       125 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~  200 (363)
T 3ffh_A          125 ALIEGAEVREIPLLQDGEHDLEGMLNAI--DEKTTIVWICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYV  200 (363)
T ss_dssp             HHHHTCEEEEEECCTTSCCCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGC
T ss_pred             HHHcCCEEEEecCCCCCCcCHHHHHHhc--ccCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhc
Confidence            34456788888877     899999999  4578999998888989987 677777777777666 99999999998776


Q ss_pred             CcCccccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547          88 RTGKLLAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-EN  161 (266)
Q Consensus        88 ~~g~~~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~  161 (266)
                      + +..... ..   .+....+.++||.++ +| +|+||+++++++.+.+....  .+++.++++++++.++++..+. ++
T Consensus       201 ~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~  276 (363)
T 3ffh_A          201 T-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQAFIGE  276 (363)
T ss_dssp             S-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCHHHHHH
T ss_pred             C-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHH
Confidence            5 432221 11   111222566999999 88 89999999999988776533  3678899999999988864321 34


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEe
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLS  237 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~  237 (266)
                      ..++++++++++.+.|++ .  ..+.. .++.|.   ++++.++.    +..+++++|.++||.++++.    .+++|++
T Consensus       277 ~~~~~~~~~~~l~~~l~~-~--~g~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis  345 (363)
T 3ffh_A          277 CRTSNANGIKQYEAFAKR-F--EKVKL-YPANGN---FVLIDLGI----EAGTIFSYLEKNGYITRSGAALGFPTAVRIT  345 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHH-C--TTCEE-CCCCSS---EEEEECSS----CHHHHHHHHHHTTEECEETTTTTCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh-C--CCceE-CCCCCe---EEEEECCC----CHHHHHHHHHHCCeEEEeCccCCCCCeEEEE
Confidence            666777777778777776 2  22332 344567   88888865    67889999999999999853    5899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINT  257 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ++   +++++++++++|+++
T Consensus       346 ~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          346 IG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             CC---CHHHHHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHHh
Confidence            54   999999999999875

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.93  E-value=3.2e-25  Score=195.19  Aligned_cols=239  Identities=14%  Similarity=0.102  Sum_probs=176.1

Q ss_pred             cccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ..+...+.+++.++++       |+++|++.++  +++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|
T Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~i~Deay  233 (427)
T 3dyd_A          157 TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID--EKTACLIVNNPSNPCGSV-FSKRHLQKILAVAARQCVPILADEIY  233 (427)
T ss_dssp             HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred             HHHHHcCCEEEEEecccccCCCCCHHHHHHHhc--cCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcCc
Confidence            3345567778887763       7899999883  457888877778888876 89999999999999999999999999


Q ss_pred             cCcCCcCccc-ccccCCCCcCee---eeccccc-CCchhhhhheec-------HHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          84 TGLGRTGKLL-AIHYEDVRPDIV---ILGKALS-GGLYPISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        84 ~~~~~~g~~~-~~~~~~~~~d~~---~~sK~~~-~g~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      .+|++.|..+ .....+..++++   ++||.++ +| +|+||++++       +++.+.+... ...++++++++++++.
T Consensus       234 ~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~  311 (427)
T 3dyd_A          234 GDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLGWILIHDRRDIFGNEIRDGLVKL-SQRILGPCTIVQGALK  311 (427)
T ss_dssp             TTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCEEEEEECSTTSSHHHHHHHHHHH-HHHHCCSCHHHHHHHH
T ss_pred             hhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceEEEEecCcchhhHHHHHHHHHHH-HhccCCCCHHHHHHHH
Confidence            9887666432 333344444455   6999976 78 999999987       3555554432 1225778999999999


Q ss_pred             HHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCc
Q psy6547         152 TALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGL  224 (266)
Q Consensus       152 ~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi  224 (266)
                      ++|+....   ++..++++++++++.+.|++ +.  .+....+..|+   ++++.++..   +..+..+++++|+ ++||
T Consensus       312 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~p~~g~---~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV  385 (427)
T 3dyd_A          312 SILCRTPGEFYHNTLSFLKSNADLCYGALAA-IP--GLRPVRPSGAM---YLMVGIEMEHFPEFENDVEFTERLVAEQSV  385 (427)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-ST--TEEEECCSBTT---EEEEEECGGGCTTCSSHHHHHHHHHHHHCE
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCeeE---EEEEecCHhhcCCCCCHHHHHHHHHHHCCE
Confidence            88874222   34667778888888888887 42  23221234567   888887631   0245788999886 8899


Q ss_pred             eeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         225 VTKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       225 ~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+.++    ..+++|+++  ..+++++++++++|.++++++.
T Consensus       386 ~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          386 HCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             ECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHHHHHHHhh
Confidence            99875    368999995  4799999999999999998754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.93  E-value=1.5e-24  Score=190.77  Aligned_cols=233  Identities=16%  Similarity=0.118  Sum_probs=172.0

Q ss_pred             CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          15 PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        15 ~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ..+.+++.++.+       |+++|++.+++    .+++++|++++++|++|.+ ++.+.+++|+++|++||+++|+||+|
T Consensus       152 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~  230 (428)
T 1iay_A          152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIY  230 (428)
T ss_dssp             TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccc
Confidence            456777888753       78999999864    2368888877778888876 89999999999999999999999999


Q ss_pred             cCcCCcCccc-c---cccC----CCCcC----eeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547          84 TGLGRTGKLL-A---IHYE----DVRPD----IVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKL  149 (266)
Q Consensus        84 ~~~~~~g~~~-~---~~~~----~~~~d----~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a  149 (266)
                      +++.+.+..+ .   +...    +..+|    +.++||+++ +| +|+||+++ ++++.+.+..  ...+++.+++++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a  307 (428)
T 1iay_A          231 AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYF  307 (428)
T ss_dssp             GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHH
T ss_pred             cccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHH
Confidence            8864443321 1   1111    12245    566999998 88 99999998 6777776653  22346678889988


Q ss_pred             HHHHHHHHh-----hccHHHHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEEEeeCc----cchHHHHHHHH
Q psy6547         150 AMTALDVIL-----EENMIENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLILSVSA----ILEVYDVCIKM  219 (266)
Q Consensus       150 ~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~----~~~~~~~~~~l  219 (266)
                      +..+++...     -+++.++++++++++.+.|++ ++   +.. ..+ .|+   |+|+.++...    ..+..+++++|
T Consensus       308 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~l  379 (428)
T 1iay_A          308 LAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VG---IKC-LKNNAGL---FCWMDLRPLLRESTFDSEMSLWRVI  379 (428)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT---CCB-CCCSSSS---EEEEECGGGCSSSSHHHHHHHHHHH
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC---Ccc-cCCCeeE---EEEEechhhcCCCchhHHHHHHHHH
Confidence            888886532     135677788888888888887 43   222 223 577   8899886510    02456899999


Q ss_pred             HHC-CceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         220 KDA-GLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       220 ~~~-gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .++ ||.++++.      .+++|++++ .++++++++++++|++++++
T Consensus       380 ~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          380 INDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            876 99998752      479999987 57999999999999998764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.92  E-value=2.2e-25  Score=196.04  Aligned_cols=244  Identities=18%  Similarity=0.115  Sum_probs=178.0

Q ss_pred             cccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHH-HhcCCEEEEecccc
Q psy6547          11 NEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQT   84 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~g~~li~De~~~   84 (266)
                      ..+...+.+++.++.+    |+++|+++++ .+++++|+++| .+|++|.+ ++.+.+++|+++| ++||+++|+||+|+
T Consensus       148 ~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~-~~~~~~v~~~p~~~NPtG~~-~~~~~~~~l~~~a~~~~~~~ii~De~y~  225 (427)
T 3ppl_A          148 SITERFGFEMISVPMNEDGPDMDAVEELVK-NPQVKGMWVVPVFSNPTGFT-VTEDVAKRLSAMETAAPDFRVVWDNAYA  225 (427)
T ss_dssp             HHHHHTTCEEEEEEEETTEECHHHHHHHTT-STTEEEEEECCSSCTTTCCC-CCHHHHHHHHHCCCSSTTCEEEEECTTT
T ss_pred             HHHHHcCCEEEEeCCCCCCCCHHHHHHHHh-cCCCeEEEECCCCCCCCCcc-CCHHHHHHHHHHHhhcCCCEEEEECCCc
Confidence            3445567778887754    8999999993 34789999886 46667766 8999999999999 99999999999998


Q ss_pred             Cc--CCcCccc-cc-------ccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          85 GL--GRTGKLL-AI-------HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        85 ~~--~~~g~~~-~~-------~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      ++  ...+... ..       +..+..+.+.++||++.+| +|+||+++++++.+.+.......+++.+++.+.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l  304 (427)
T 3ppl_A          226 VHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYF  304 (427)
T ss_dssp             TCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             ccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence            74  3222111 11       1345566777899997789 999999999998888776555667778888888888777


Q ss_pred             HHH---hh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         155 DVI---LE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       155 ~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      +..   ..  ....+.++++.+.+.+.|.+.+.. ..+....+..|+   ++|+.++.  . +..++.+.|.++||.+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~---~~~~~~~~--~-~~~~~~~~l~~~gv~v~~  378 (427)
T 3ppl_A          305 GDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGY---FISLDVVP--G-TASRVAELAKEAGIALTG  378 (427)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSS---CEEEECST--T-CHHHHHHHHHHTTEECCC
T ss_pred             hChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccE---EEEEECCc--c-hHHHHHHHHHHCCCEEec
Confidence            541   11  234455555666666666542322 122221234577   89999876  3 578899999999999998


Q ss_pred             C----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         229 I----------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       229 ~----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +          ..+++|++++.. +++++++++++|.+++++...+
T Consensus       379 ~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~~~  423 (427)
T 3ppl_A          379 AGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAAAE  423 (427)
T ss_dssp             TTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            2          358999998654 9999999999999999886544

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.92  E-value=3.4e-26  Score=197.66  Aligned_cols=235  Identities=12%  Similarity=0.096  Sum_probs=173.4

Q ss_pred             cCCCCCCceeecCC---CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          13 FGPHMPGYNIIPYN---DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        13 ~~~~~~~v~~~~~~---d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +...+.+++.++.+   |+++|++.+++  ++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++.+.
T Consensus       122 ~~~~g~~~~~~~~~~~~d~~~l~~~l~~--~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  198 (377)
T 3fdb_A          122 LSATQREGIFIDATGGINLHDVEKGFQA--GARSILLCNPYNPLGMV-FAPEWLNELCDLAHRYDARVLVDEIHAPLVFD  198 (377)
T ss_dssp             HHHHTCCEEEEECTTSCCHHHHHHHHHT--TCCEEEEESSBTTTTBC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred             HHHcCCEEEEccCCCCCCHHHHHHHhcc--CCCEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEcccchhhcC
Confidence            33456778888876   89999999954  36677777778888876 89999999999999999999999999887665


Q ss_pred             C-c-cccc---ccCCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547          90 G-K-LLAI---HYEDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--E  160 (266)
Q Consensus        90 g-~-~~~~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~  160 (266)
                      | . ...+   ...+..+++.++||+++ +| +|+||++. ++++.+.+.......+++.++++++++.++++....  +
T Consensus       199 g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  277 (377)
T 3fdb_A          199 GQHTVAAGVSDTAASVCITITAPSKAWNIAG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLN  277 (377)
T ss_dssp             SCCCCGGGSCHHHHHHEEEEECSTTTTTCGG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCCcccHHHccCCCcEEEEEeChHhccCcc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHH
Confidence            5 2 1111   11233466777999997 88 99998766 778877776655566778899999998888875322  4


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccCC------CCE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPIS------NNI  233 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~------~~~  233 (266)
                      +..++++++++++.+.|++.++  .+.......+.   ++|+.++.. +. ..++++.|+++ ||.+.++.      .++
T Consensus       278 ~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~---~~~~~~~~~-~~-~~~~~~~l~~~~gi~v~~g~~~~~~~~~~  350 (377)
T 3fdb_A          278 QEVAYLKNNHDFLLHEIPKRIP--GAKITPMQATY---LMWIDFRDT-TI-EGSPSEFFIEKAKVAMNDGAWFGEDGTGF  350 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHST--TCEECCCSBCS---EEEEECTTS-CC-CSCHHHHHHHHHCEECEEGGGGCGGGTTE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCC--CceEecCCeeE---EEEEECccc-CC-CHHHHHHHHHhCCEEecCChhccCCCCCE
Confidence            5677788888888888876222  22221222344   567877652 12 25678888765 99998752      589


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|++++  .+++++++++++|++++++
T Consensus       351 ~Ris~~--~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          351 CRLNFA--TSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             EEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence            999966  5899999999999998865

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1e-25  Score=197.22  Aligned_cols=235  Identities=16%  Similarity=0.163  Sum_probs=173.6

Q ss_pred             CCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++.        .|+++|++.++  +++++|++++++|++|.+ ++.+.+++|+++|++||+++|+||+|++
T Consensus       128 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~--~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  204 (411)
T 2o0r_A          128 AMAGAHRVTVPLVPDGRGFALDADALRRAVT--PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEH  204 (411)
T ss_dssp             HHTTCEEEEEECEEETTEEECCHHHHHHHCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHcCCEEEEeeccccccCCCCCHHHHHHhhc--cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            334567777764        48999999993  478999988888888876 8899999999999999999999999988


Q ss_pred             cCCcCcc-ccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          86 LGRTGKL-LAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        86 ~~~~g~~-~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      +...|.. ..+..    .+.++.+.++||.++ +| +|+||+++++++.+.+.......+++.+++.++++..+|+....
T Consensus       205 ~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  283 (411)
T 2o0r_A          205 LVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDA  283 (411)
T ss_dssp             CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHH
T ss_pred             cccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChH
Confidence            7554431 12221    234556677999998 88 99999999998887776544445666777888888888875322


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-------
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-------  229 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------  229 (266)
                        +++.++++++++++.+.|++ .+.   .......|.   ++|+.++...+.+..+++++|. ++||.+.++       
T Consensus       284 ~~~~~~~~~~~~~~~l~~~L~~-~g~---~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~  356 (411)
T 2o0r_A          284 WVAALRNSLRARRDRLAAGLTE-IGF---AVHDSYGTY---FLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPA  356 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HTC---EECCCCBSS---EEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCC---EecCCCeeE---EEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCc
Confidence              35677788888888888887 432   211223466   8888886511135778999886 679999763       


Q ss_pred             ----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ----------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                +.+++|+++.  .+++++++++++|.+++++.
T Consensus       357 ~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~  396 (411)
T 2o0r_A          357 AGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP  396 (411)
T ss_dssp             --------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred             cccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence                      2468999964  58999999999999877654

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.92  E-value=4e-26  Score=199.17  Aligned_cols=236  Identities=14%  Similarity=0.138  Sum_probs=174.1

Q ss_pred             cCCCCCCceeecC-----------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          13 FGPHMPGYNIIPY-----------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        13 ~~~~~~~v~~~~~-----------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +...+.+++.+++           .|+++|++.+++  ++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||
T Consensus       143 ~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De  219 (407)
T 3nra_A          143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNNPAGVV-YSAEEIGQIAALAARYGATVIADQ  219 (407)
T ss_dssp             HHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT--TCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh--CCcEEEEcCCCCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEc
Confidence            3445677778876           289999999954  56777777678888876 899999999999999999999999


Q ss_pred             cccCcCCcCccc-cccc-----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGKLL-AIHY-----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        82 ~~~~~~~~g~~~-~~~~-----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +|+++...|..+ .+..     .+..+.+.++||+++ +| +|+||+++++++.+.+.......++++++++++++..++
T Consensus       220 a~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l  298 (407)
T 3nra_A          220 LYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWF  298 (407)
T ss_dssp             TTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTT
T ss_pred             cccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHH
Confidence            998875555422 2222     223455667999999 88 999999999998888775555566677888887777666


Q ss_pred             HHHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC--
Q psy6547         155 DVIL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI--  229 (266)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--  229 (266)
                      +...  -++..++++++++++++.|++ ++  .+.......|.   ++++.++.. +.+..+++++|++ +||.+.++  
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~  371 (407)
T 3nra_A          299 DEAPGWMEDRIARHQAIRDELLHVLRG-CE--GVFARTPQAGS---YLFPRLPKL-AVAPAEFVKILRLQAGVVVTPGTE  371 (407)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHT-ST--TCBCCCCSBSS---EECCBCCCB-SSCHHHHHHHHHHHHCEECEEGGG
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHhc-CC--CceeccCCeeE---EEEEeCCCC-CCCHHHHHHHHHHhCCEEEeCchh
Confidence            4211  134566777788888888877 42  22221223356   788777641 3467889999975 59999864  


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                          ..+++|++++  .+++++++++++|.++++++
T Consensus       372 ~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          372 FSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             TCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence                3589999976  49999999999999998765

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.92  E-value=9.8e-26  Score=194.56  Aligned_cols=225  Identities=17%  Similarity=0.165  Sum_probs=170.2

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +...+.+++.++ .|+++|++.++  +++++|++++++|++|.+ ++.+    |.++|++||+++|+||+|+++...|..
T Consensus       130 ~~~~g~~~~~v~-~d~~~l~~~l~--~~~~~v~~~~p~nptG~~-~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~  201 (370)
T 2z61_A          130 IRFLGAKPVFCD-FTVESLEEALS--DKTKAIIINSPSNPLGEV-IDRE----IYEFAYENIPYIISDEIYNGLVYEGKC  201 (370)
T ss_dssp             HHHTTCEEEEEC-SSHHHHHHHCC--SSEEEEEEESSCTTTCCC-CCHH----HHHHHHHHCSEEEEECTTTTCBSSSCC
T ss_pred             HHHcCCEEEEeC-CCHHHHHHhcc--cCceEEEEcCCCCCcCcc-cCHH----HHHHHHHcCCEEEEEcchhhcccCCCC
Confidence            334567788888 79999999994  468888888888888887 4444    999999999999999999877554432


Q ss_pred             ccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH-Hhh--ccHHH
Q psy6547          93 LAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-ILE--ENMIE  164 (266)
Q Consensus        93 ~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~--~~~~~  164 (266)
                      .....    .+.+..+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++.++|+. ...  +++.+
T Consensus       202 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  280 (370)
T 2z61_A          202 YSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIK  280 (370)
T ss_dssp             CCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHH
T ss_pred             cCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHH
Confidence            22222    233445666999998 88 89999999999888776544555677889999888888865 222  45677


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CCCEEEEe
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SNNIIRLS  237 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~iR~~  237 (266)
                      +++++++++.+.|++ ++....   ....|.   ++|+.++.    +..+++++|. ++||.+.++      +.+++|++
T Consensus       281 ~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~  349 (370)
T 2z61_A          281 EFDRRRRLVLKYVKD-FGWEVN---NPIGAY---YVFPNIGE----DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRIS  349 (370)
T ss_dssp             HHHHHHHHHHHHHHH-TTCBCC---CCCBTT---EECCBCSS----CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEE
T ss_pred             HHHHHHHHHHHHHHH-cCCeec---CCCcce---EEEEecCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE
Confidence            888889999999887 432221   223466   67777754    5778999997 789999875      26799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ++  ++++++++++++|.++++
T Consensus       350 ~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          350 YA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CC--SCHHHHHHHHHHHHHHHC
T ss_pred             Ee--CCHHHHHHHHHHHHHHHh
Confidence            77  699999999999998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.92  E-value=7e-25  Score=192.37  Aligned_cols=221  Identities=19%  Similarity=0.171  Sum_probs=167.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-cccccC----CCC
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYE----DVR  101 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~~~----~~~  101 (266)
                      |+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++.+.|.. ..+...    +..
T Consensus       163 d~~~l~~~~--~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  239 (422)
T 3fvs_A          163 DPMELAGKF--TSRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERT  239 (422)
T ss_dssp             CHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred             CHHHHHhhc--CCCceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcE
Confidence            789999988  4578999988888888887 79999999999999999999999999887655532 122222    233


Q ss_pred             cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH-------hh--ccHHHHHHHHHH
Q psy6547         102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-------LE--ENMIENAYKMGE  171 (266)
Q Consensus       102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~--~~~~~~~~~~~~  171 (266)
                      +.+.++||.++ +| +|+||+++++++++.+.......+++.+++.+.++..+++..       ..  +++.++++++++
T Consensus       240 i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (422)
T 3fvs_A          240 LTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD  318 (422)
T ss_dssp             EEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHH
T ss_pred             EEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH
Confidence            55667999998 88 999999999998887765556678888999999999888751       11  346677788888


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cch----------HHHHHHHHH-HCCceeccC----------
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILE----------VYDVCIKMK-DAGLVTKPI----------  229 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~----------~~~~~~~l~-~~gi~~~~~----------  229 (266)
                      ++.+.|++ ++   +....+..|.   ++|+.+.... ...          ..+++.+|+ ++||.+.++          
T Consensus       319 ~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~  391 (422)
T 3fvs_A          319 HMIRSLQS-VG---LKPIIPQGSY---FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQK  391 (422)
T ss_dssp             HHHHHHHT-TT---CEEEBCSBSS---EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHT
T ss_pred             HHHHHHHH-cC---CeecCCCeee---EEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCC
Confidence            88888887 42   3321334567   8888875410 000          557888865 579998873          


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       +.+++|+++.  .+++++++++++|++++++
T Consensus       392 ~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          392 HFDHYIRFCFV--KDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             TSCSEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence             2589999954  5999999999999998764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.92  E-value=1.2e-25  Score=195.62  Aligned_cols=229  Identities=14%  Similarity=0.020  Sum_probs=172.6

Q ss_pred             cCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          13 FGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        13 ~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      +...+.+++.++.+      |+++|++.+++  ++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++
T Consensus       137 ~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~--~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~  213 (396)
T 3jtx_A          137 TLLGGGEIHFANCPAPSFNPDWRSISEEVWK--RTKLVFVCSPNNPSGSV-LDLDGWKEVFDLQDKYGFIIASDECYSEI  213 (396)
T ss_dssp             HHHTTCEEEEEECCTTTCCCCGGGSCHHHHH--TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEECTTTTC
T ss_pred             HHHcCCEEEEeecCCCCCccCHHHHHHhhcc--CcEEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            34456777787753      78899998854  68888887778888876 89999999999999999999999999887


Q ss_pred             CCcC-cccccc--------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH
Q psy6547          87 GRTG-KLLAIH--------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        87 ~~~g-~~~~~~--------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  156 (266)
                      ...| .+....        ..+..+.+.++||.++ +| +|+||+++++++.+.+.......+++.+++++.++.++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  292 (396)
T 3jtx_A          214 YFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD  292 (396)
T ss_dssp             CSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC
T ss_pred             ccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC
Confidence            6655 222211        1455677788999987 78 99999999999888877555566778899999998888863


Q ss_pred             Hh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-----
Q psy6547         157 IL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-----  229 (266)
Q Consensus       157 ~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-----  229 (266)
                      .+ -++..++++++.+.+.+.|++ .    +.......|.   ++|+.++.   .+..+++++|. ++||.+.|+     
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~l~~-~----~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~  361 (396)
T 3jtx_A          293 EQHVIDNRRLYQEKFERVIPILQQ-V----FDVKLPDASF---YIWLKVPD---GDDLAFARNLWQKAAIQVLPGRFLAR  361 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTT-T----SCCCCCSSSS---EEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-c----CCccCCCeeE---EEEEECCC---CCHHHHHHHHHHHCCEEEeCChHhCC
Confidence            11 134566677777777777776 2    1111233467   88888865   35778999985 569999764     


Q ss_pred             -------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 -------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 -------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                             +.+++|++++  .+++++++++++|.+++
T Consensus       362 ~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          362 DTEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             CCTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             cccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence                   2489999965  49999999999998864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.92  E-value=3.2e-25  Score=192.10  Aligned_cols=228  Identities=18%  Similarity=0.211  Sum_probs=172.8

Q ss_pred             CCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++.+        |+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|++
T Consensus       120 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  196 (381)
T 1v2d_A          120 FLAGAKARLVRLDLTPEGFRLDLSALEKAL--TPRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDE  196 (381)
T ss_dssp             HHTTCEEEEEECEEETTEEECCHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHcCCEEEEEeCCCCCccCCcCHHHHHHhc--CcCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence            3345677777753        799999988  4568999988888888877 7899999999999999999999999987


Q ss_pred             cCCcCc-ccccc--cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--h
Q psy6547          86 LGRTGK-LLAIH--YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E  159 (266)
Q Consensus        86 ~~~~g~-~~~~~--~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~  159 (266)
                      +.. |. ...+.  ..+.++.+.++||+++ +| +|+||+++++++.+.+.......+++.+++.+.++.++|+...  .
T Consensus       197 ~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  274 (381)
T 1v2d_A          197 LYY-GERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREG  274 (381)
T ss_dssp             CBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccc-CCCCCCHHHhcCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHH
Confidence            643 32 11111  3466777888999998 78 9999999998888777644444567788889988888888652  2


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------  229 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------  229 (266)
                        +++.++++++++++.+.|++ .+.   .......|.   ++++.++.  . +   +...|.++||.+.++        
T Consensus       275 ~~~~~~~~~~~~~~~l~~~L~~-~g~---~~~~~~~~~---~~~~~~~~--~-~---~~~~l~~~gi~v~~g~~~~~~~~  341 (381)
T 1v2d_A          275 FYEALREGYRRRRDLLAGGLRA-MGL---RVYVPEGTY---FLMAELPG--W-D---AFRLVEEARVALIPASAFYLEDP  341 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTC---CEECCSBSS---EEEEECTT--C-C---HHHHHHHTCEECEEGGGGCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CCC---EecCCCcce---EEEEecCh--H-h---HHHHHHhCCEEEecchHhCCCCC
Confidence              35677888888888888887 432   221122366   88888765  2 2   667778999999864        


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..+++|++++.  +++++++++++|.+++++.
T Consensus       342 ~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          342 PKDLFRFAFCK--TEEELHLALERLGRVVNSP  371 (381)
T ss_dssp             CTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred             CCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence            35799999764  9999999999999988764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.92  E-value=1.1e-25  Score=194.39  Aligned_cols=226  Identities=13%  Similarity=0.043  Sum_probs=169.7

Q ss_pred             cCCCCCCceeecCCCHH----HHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          13 FGPHMPGYNIIPYNDVD----ALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~----~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      +...+.+++.++.++.+    ++++.+..  ++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++..
T Consensus       125 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  201 (376)
T 3ezs_A          125 AKFIKAKSLLMPLTKENDFTPSLNEKELQ--EVDLVILNSPNNPTGRT-LSLEELISWVKLALKHDFILINDECYSEIYE  201 (376)
T ss_dssp             HHHTTCEEEEEECCGGGTSCCCCCHHHHH--HCSEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBS
T ss_pred             HHHcCCEEEEcccCCCCCcchhHHhhhcc--CCCEEEEcCCCCCcCCC-CCHHHHHHHHHHHHHcCcEEEEEccchhhcc
Confidence            44556778888765332    56666643  56788887778888876 8999999999999999999999999988765


Q ss_pred             cCcccccc---------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          89 TGKLLAIH---------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        89 ~g~~~~~~---------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      .+......         ..+..+.+.++||+++ +| +|+||+++++++.+.+.......+++.+++++.++.++++..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  280 (376)
T 3ezs_A          202 NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDR  280 (376)
T ss_dssp             SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSH
T ss_pred             CCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcH
Confidence            55332221         3455667778999997 88 9999999999998888765666778889999999888886421


Q ss_pred             h-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------
Q psy6547         159 E-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------  229 (266)
Q Consensus       159 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------  229 (266)
                      . ++..++++++++.+.+.|+      .+.  .+..|.   ++|+.++     +..+++++|.+ +||.+.++       
T Consensus       281 ~~~~~~~~~~~~~~~l~~~l~------~~~--~~~~~~---~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~  344 (376)
T 3ezs_A          281 HAEFFRNIYANNLKLARKIFK------NTL--IYPYSF---YVYLPVQ-----NGENFAKTLYQNEGIITLPALYLGRNR  344 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHST------TCC--CCSBSS---EEEEECS-----CHHHHHHHHHHHHCCBCEEGGGGCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCC--CCCcce---EEEEECC-----CHHHHHHHHHHhCCEEEeCcHHhCCCC
Confidence            1 2345555566666666554      121  334577   8888876     36789999987 89999863       


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       ..+++|++++  .+++++++++++|++++++
T Consensus       345 ~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          345 IGADYVRLALV--YDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             TTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence             4589999965  4999999999999998764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.92  E-value=2.5e-25  Score=195.51  Aligned_cols=240  Identities=15%  Similarity=0.095  Sum_probs=174.4

Q ss_pred             CCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHH-hcCCEEEEeccccC--
Q psy6547          14 GPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCS-QYNVLFIADEVQTG--   85 (266)
Q Consensus        14 ~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~-~~g~~li~De~~~~--   85 (266)
                      ...+.+++.++.    .|+++|++.+++ .++++|++.+ ++|++|.+ ++.+.+++|+++|+ +||+++|+||+|..  
T Consensus       149 ~~~g~~~~~v~~~~~g~d~~~l~~~l~~-~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~~~~~~~~~li~De~y~~~~  226 (422)
T 3d6k_A          149 EHFGFEMINVPMTDEGPDMGVVRELVKD-PQVKGMWTVPVFGNPTGVT-FSEQTCRELAEMSTAAPDFRIVWDNAYALHT  226 (422)
T ss_dssp             HHHTCEEEEEEEETTEECHHHHHHHHTS-TTEEEEEECCSSCTTTCCC-CCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             HHcCCEEEecCCCCCCCCHHHHHHHHhc-CCCeEEEEcCCCCCCCCCC-CCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence            334667777775    379999999943 2688888555 57777765 89999999999999 99999999999964  


Q ss_pred             cCCcCcc-ccc-------ccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          86 LGRTGKL-LAI-------HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        86 ~~~~g~~-~~~-------~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      |...+.. ..+       +..+..+.+.+|||+..+| +|+||+++++++++.+.......+++.+++++.++..+|+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~  305 (422)
T 3d6k_A          227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV  305 (422)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH
T ss_pred             cCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc
Confidence            5433321 122       2344566777899996689 999999999998887775545556778899998888887541


Q ss_pred             h---h--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--
Q psy6547         158 L---E--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--  229 (266)
Q Consensus       158 ~---~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--  229 (266)
                      .   .  +...+.++++++.+.+.|.+.+.. ..+....+..|+   ++|+.++.  . +..++.+.|.++||.++++  
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~---~~~~~~~~--~-~~~~~~~~l~~~gV~v~~~g~  379 (422)
T 3d6k_A          306 AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGY---FISVDVVP--G-TASRVVELAKEAGIALTGAGS  379 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSS---CEEEEEST--T-CHHHHHHHHHHTTEECCCTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcce---EEEEECCC--C-CHHHHHHHHHHCCeEEEcCcc
Confidence            1   1  234455556666666666652322 112211234577   89999876  2 5677888899999999883  


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                              ..+++|++++. ++++++++++++|++++++...
T Consensus       380 ~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          380 SFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             TSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence                    14789999776 7999999999999999987644

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.92  E-value=1.2e-24  Score=189.61  Aligned_cols=238  Identities=13%  Similarity=0.085  Sum_probs=171.6

Q ss_pred             CCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++.        .|+++|++.+++ +++++|+++.++|++|.+ ++.+.+++|+++|++||+++|+||+|++
T Consensus       131 ~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  208 (399)
T 1c7n_A          131 KNQERKIIECELLEKDGYYTIDFQKLEKLSKD-KNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFD  208 (399)
T ss_dssp             HTTTCEEEECCCEEETTEEECCHHHHHHHHTC-TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTT
T ss_pred             HHcCCEEEecccccCCCCEEEcHHHHHHHhcc-CCCcEEEEcCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            345667777765        479999999942 468888887788888876 8999999999999999999999999988


Q ss_pred             cCCcCcc-ccccc-----CCCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHH
Q psy6547          86 LGRTGKL-LAIHY-----EDVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTY-GGNPLACKLAMTALDV  156 (266)
Q Consensus        86 ~~~~g~~-~~~~~-----~~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~  156 (266)
                      +.+.|.. ..+..     .+..+.+.++||+++ +| +|+||++++ +++.+.+.......++ +.+++++.++.++++.
T Consensus       209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~  287 (399)
T 1c7n_A          209 LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE  287 (399)
T ss_dssp             CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCcccHHHcCccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC
Confidence            7654532 22222     233445667999999 88 899999986 5677776543333333 5788899888888864


Q ss_pred             Hh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC---
Q psy6547         157 IL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI---  229 (266)
Q Consensus       157 ~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~---  229 (266)
                      ..  -+...++++++++++.+.|++.++  .+.. ..+ .+.   ++|+.++.. +.+..+++++|+ ++||.+.++   
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~-~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~  360 (399)
T 1c7n_A          288 CGKWLDGCIKVIDKNQRIVKDFFEVNHP--EIKA-PLIEGTY---LQWIDFRAL-KMDHKAMEEFMIHKAQIFFDEGYIF  360 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSBC-CCCSBSS---EEEEECGGG-CCCHHHHHHHHHHTTCCCCEEGGGG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhCC--CCeE-ecCCceE---EEEEEcccC-CCCHHHHHHHHHHhCCEEEeCcccc
Confidence            21  134566677778888887775221  2322 222 344   557887641 146788999997 689999875   


Q ss_pred             ---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 ---SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 ---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         ..+++|++++.  +++++++++++|.++++++..
T Consensus       361 ~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          361 GDGGIGFERINLAA--PSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             CGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEEecc--CHHHHHHHHHHHHHHHHHHHh
Confidence               35799999664  589999999999999987643

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.92  E-value=5.4e-25  Score=191.62  Aligned_cols=232  Identities=17%  Similarity=0.180  Sum_probs=173.9

Q ss_pred             cccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh------cCCEEE
Q psy6547          11 NEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFI   78 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~------~g~~li   78 (266)
                      ..+...+.+++.++.+      |+++|++++  .+++++++++.++|++|.+ ++.+.+++|+++|++      ||+++|
T Consensus       139 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~~~~~~li  215 (398)
T 3ele_A          139 VFVNAAGARLVEVPADTEHFQIDFDALEERI--NAHTRGVIINSPNNPSGTV-YSEETIKKLSDLLEKKSKEIGRPIFII  215 (398)
T ss_dssp             HHHHHTTCEEEEECCCTTTSSCCHHHHHHTC--CTTEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             HHHHHcCCEEEEEecCCcCCcCCHHHHHHHh--CcCCCEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhhhhccCCCeEEE
Confidence            3345567788888865      789999999  4478999988888888876 899999999999999      999999


Q ss_pred             EeccccCcCCcCccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhh------ccCCC-CCCCCCCCcHHHHH
Q psy6547          79 ADEVQTGLGRTGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMG------TLVPG-THGSTYGGNPLACK  148 (266)
Q Consensus        79 ~De~~~~~~~~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~  148 (266)
                      +||+|+++...|...  .....+..+.+.++||+++ +| +|+||+++++++.+      .+... ....+++.+++.+.
T Consensus       216 ~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (398)
T 3ele_A          216 ADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQK  294 (398)
T ss_dssp             EECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             EeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHH
Confidence            999998876555322  2233445566677999999 99 99999999887433      11111 12235566777777


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      ++..+++   .....++++++++++.+.|++ ++   +.......|.   ++|+.++.   .+..++++.|.++||.+.+
T Consensus       295 a~~~~l~---~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~  361 (398)
T 3ele_A          295 MIVKCQG---ATGDINAYKENRDLLYEGLTR-IG---YHCFKPDGAF---YMFVKALE---DDSNAFCEKAKEEDVLIVA  361 (398)
T ss_dssp             HHTTCTT---CCCCHHHHHHHHHHHHHHHHH-HT---CCEECCSBSS---EEEEECSS---SCHHHHHHHHHTTTEECEE
T ss_pred             HHHHHhc---CHHHHHHHHHHHHHHHHHHHH-cC---CeecCCCeeE---EEEEEcCC---CCHHHHHHHHHHCCEEEeC
Confidence            7665553   344678888999999999988 53   2221223355   68888765   2578899999999999987


Q ss_pred             CC----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         229 IS----NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       229 ~~----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.    .+++|++++  ++++++++++++|.++++++
T Consensus       362 g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~  396 (398)
T 3ele_A          362 ADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKY  396 (398)
T ss_dssp             SGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            63    689999964  79999999999999998765

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.92  E-value=9.2e-25  Score=192.94  Aligned_cols=243  Identities=16%  Similarity=0.169  Sum_probs=175.3

Q ss_pred             cCCCCCCceeecC----------CCHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          13 FGPHMPGYNIIPY----------NDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        13 ~~~~~~~v~~~~~----------~d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +...+..++.++.          .|+++|++++++ .+++++|+++.++|++|.+ ++.+.+++|+++|++||+++|+||
T Consensus       168 ~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De  246 (444)
T 3if2_A          168 FAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNV-LTDEEMAHLAEIAKRYDIPLIIDN  246 (444)
T ss_dssp             EEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCc-CCHHHHHHHHHHHHHCCCEEEEEC
Confidence            3345666777662          389999998543 5678999987778888876 899999999999999999999999


Q ss_pred             cccCcCCcCccc---ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547          82 VQTGLGRTGKLL---AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus        82 ~~~~~~~~g~~~---~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      +|..+. .+..+   .....+..+++.++||...+| +|+||+++++++.+.+....+..+++++++.+.++...++...
T Consensus       247 ~~~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  324 (444)
T 3if2_A          247 AYGMPF-PNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDR  324 (444)
T ss_dssp             TTCTTT-TCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSH
T ss_pred             CCCCcc-cccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCc
Confidence            996431 11111   111234556677899986688 9999999999988887765555667778888888877776422


Q ss_pred             h-----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC---
Q psy6547         159 E-----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---  230 (266)
Q Consensus       159 ~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---  230 (266)
                      .     +.+.++++++.+.+.+.|.+.+....+....+..|.   ++|+.++.. +.+..++++.|.++||.+.++.   
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~---~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~~~  400 (444)
T 3if2_A          325 IKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAI---FLWLWFKDL-PISTLDLYERLKAKGTLIVPSEYFF  400 (444)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSS---EEEEEETTC-SSCHHHHHHHHHHTTEECEEGGGSC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccE---EEEEEcCCC-CCCHHHHHHHHHHCCeEEecchhhc
Confidence            1     124556666777777777663332222221234577   888888641 2468889999999999998741   


Q ss_pred             -----------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         231 -----------NNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       231 -----------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                                 .+++|++++.  +++++++++++|.++++++.+.
T Consensus       401 ~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~~  443 (444)
T 3if2_A          401 PGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYDN  443 (444)
T ss_dssp             TTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence                       1589999775  9999999999999999887654

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=1.9e-24  Score=187.76  Aligned_cols=235  Identities=13%  Similarity=0.096  Sum_probs=169.4

Q ss_pred             CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ..+.+++.++.        .|+++|++.+++ .++++|+++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++
T Consensus       130 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~  207 (390)
T 1d2f_A          130 GNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDM  207 (390)
T ss_dssp             HTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred             HCCCEEEEeecccCCCccccCHHHHHHHhcc-CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            34566777764        489999999953 268888877778888876 78899999999999999999999999887


Q ss_pred             CCcCccc-ccccCCCC-cC-eeeeccccc-CCchhhhhheec-HHhhhccCCCCC-CCCC-CCcHHHHHHHHHHHHHHhh
Q psy6547          87 GRTGKLL-AIHYEDVR-PD-IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTH-GSTY-GGNPLACKLAMTALDVILE  159 (266)
Q Consensus        87 ~~~g~~~-~~~~~~~~-~d-~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~l~~~~~  159 (266)
                      .+.|..+ ........ .| +.++||+++ +| +|+||++++ +++.+.+..... ..++ +.+++++.++.++++....
T Consensus       208 ~~~g~~~~~~~~~~~~~~d~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  286 (390)
T 1d2f_A          208 VWGEQPHIPWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAP  286 (390)
T ss_dssp             BCSSSCCCCGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHH
T ss_pred             ccCCCCCcCHHHcchhhHhhccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHH
Confidence            6555422 22111111 02 778999998 88 899999985 677776654333 4454 6788888888888874221


Q ss_pred             --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------  229 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------  229 (266)
                        ++..++++++++++.+.|++.++  .+.. ..+ .+.   ++|+.++.. +.+..++++.|. ++||.+.++      
T Consensus       287 ~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~-~~~~~~~---~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~~~  359 (390)
T 1d2f_A          287 WLDALRIYLKDNLTYIADKMNAAFP--ELNW-QIPQSTY---LAWLDLRPL-NIDDNALQKALIEQEKVAIMPGYTYGEE  359 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCS--SCCC-CCCSBCS---EEEEECGGG-CCCHHHHHHHHHHTTCEECEEGGGGCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC--CCEE-ecCCccE---EEEEEcccc-CCCHHHHHHHHHHHcCEEeeCccccCCC
Confidence              34566777788888888876221  2222 222 345   567888651 146788999999 689999875      


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..+++|++++.  +++++++++++|.+++++.
T Consensus       360 ~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          360 GRGFVRLNAGC--PRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             GTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            25799999664  6899999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.92  E-value=6.1e-25  Score=190.60  Aligned_cols=233  Identities=17%  Similarity=0.111  Sum_probs=171.5

Q ss_pred             cCCCCCCceeecCC---------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          13 FGPHMPGYNIIPYN---------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        13 ~~~~~~~v~~~~~~---------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      +...+.+++.++.+         |+++|+++++  + ++++++++++|++|.+ ++.+++++|+++|++||+++|+||+|
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~-~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~  206 (391)
T 4dq6_A          131 VKNNNRELIISPLQKLENGNYIMDYEDIENKIK--D-VKLFILCNPHNPVGRV-WTKDELKKLGDICLKHNVKIISDEIH  206 (391)
T ss_dssp             HHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--T-EEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--c-CCEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEeeccc
Confidence            34456777877765         8999999994  3 8888888888888876 89999999999999999999999999


Q ss_pred             cCcCCcCccc-ccccC-----CCCcCeeeeccccc-CCchhhhhheecH-HhhhccCCC-CCCCCCCCcHHHHHHHHHHH
Q psy6547          84 TGLGRTGKLL-AIHYE-----DVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPG-THGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        84 ~~~~~~g~~~-~~~~~-----~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l  154 (266)
                      +++.+.|..+ .+...     +..+.+.++||+++ +| +|+||++++. ++.+.+... ....++++++++++++.+++
T Consensus       207 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  285 (391)
T 4dq6_A          207 SDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASY  285 (391)
T ss_dssp             TTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             cccccCCCCccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            8876555321 22221     22344667999998 88 9999998875 777766543 23456678899999888888


Q ss_pred             HHHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC--
Q psy6547         155 DVIL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI--  229 (266)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--  229 (266)
                      +..+  -++..++++++++++.+.|++.+.  .+.......+.   ++|+.++.. +.+..+++++|.++ ||.++++  
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~  359 (391)
T 4dq6_A          286 NNGESWLESFLEYLESNIDFAIKYINENMP--KLKVRKPEGTY---LLWVDFSAL-GLSDEELESILVQKGKVALNQGNS  359 (391)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSEECCCSBSS---EEEEECGGG-CCCHHHHHHHHHHTTCEECEEGGG
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCEecCCCccE---EEEEEhhhc-CCCHHHHHHHHHHhCCEEeeCchh
Confidence            7532  234667777788888888776222  23221223344   566777641 24688999999998 9999874  


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                          +.+++|++++  ++++++++++++|++++
T Consensus       360 ~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          360 FGIGGSGYQRINLA--CPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             GCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence                3489999966  69999999999999876

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.92  E-value=1.9e-25  Score=195.15  Aligned_cols=235  Identities=15%  Similarity=0.074  Sum_probs=170.6

Q ss_pred             CCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.++.+       |+++|++.++  +++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++.
T Consensus       144 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~  220 (406)
T 1xi9_A          144 FYGGKPVEYRTIEEEDWQPDIDDIRKKIT--DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMT  220 (406)
T ss_dssp             HTTCEEEEEEEEGGGTSEECHHHHHHHCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred             HcCCEEEEeecCCCcCCcCCHHHHHHhhC--cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence            345667776642       7999999994  468888888888888876 899999999999999999999999998875


Q ss_pred             CcCcccccccC--CC-CcCeeeeccccc-CCchhhhhhe--ecH----HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          88 RTGKLLAIHYE--DV-RPDIVILGKALS-GGLYPISAVL--ADD----EVMGTLVPGTHGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        88 ~~g~~~~~~~~--~~-~~d~~~~sK~~~-~g~~~~g~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      ..+....+..+  +. +..+.++||+++ +| +|+||++  +++    ++.+.+....... ++.+++.+.++.++|+..
T Consensus       221 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~  298 (406)
T 1xi9_A          221 YEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGP  298 (406)
T ss_dssp             SSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSC
T ss_pred             cCCCCCCHHHcCCCceEEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCC
Confidence            43322222222  22 223345899998 78 9999999  888    8877765432223 677888888888888532


Q ss_pred             h--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC----
Q psy6547         158 L--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS----  230 (266)
Q Consensus       158 ~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----  230 (266)
                      .  -+++.++++++++++.+.|++ ++  .+.......|.   ++++.++...+.+..+++++|. ++||.+.++.    
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~  372 (406)
T 1xi9_A          299 MDYLKEYMKKLKERRDYIYKRLNE-IP--GISTTKPQGAF---YIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE  372 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHT-ST--TEECCCCCBSS---EECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh-CC--CCeeecCCeeE---EEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC
Confidence            2  145677888888899888887 52  12210122355   6666765310235788999987 8899998752    


Q ss_pred             --CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 --NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                        .+++|++++  ++++++++++++|.++++++.
T Consensus       373 ~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~  404 (406)
T 1xi9_A          373 YGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL  404 (406)
T ss_dssp             GGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence              579999976  899999999999999987753

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.92  E-value=6.6e-24  Score=184.84  Aligned_cols=230  Identities=17%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRT   89 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~   89 (266)
                      ...+.+++.++.+|+++|++++++.+  ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.+  +..
T Consensus       145 ~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~----~~~~l~~~~~~~~~~li~De~~~~~~~~~~  220 (398)
T 3a2b_A          145 RLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV----NLPELTSIANEFDAAVMVDDAHSLGVIGHK  220 (398)
T ss_dssp             HHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTTTTTSSGG
T ss_pred             HHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc----CHHHHHHHHHHcCcEEEEECCCcccccCCC
Confidence            33567889999999999999996532  689999999999999885    6999999999999999999999643  222


Q ss_pred             CcccccccCCCC--cCee--eecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547          90 GKLLAIHYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILE-ENM  162 (266)
Q Consensus        90 g~~~~~~~~~~~--~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~-~~~  162 (266)
                      +..+ ...++..  +|++  ++||++++.   .||+++++++++.+...  ....+...++..++++.++|+.++. ++.
T Consensus       221 ~~~~-~~~~~~~~~~di~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~  296 (398)
T 3a2b_A          221 GAGT-ASHFGLNDDVDLIMGTFSKSLASL---GGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEH  296 (398)
T ss_dssp             GCCH-HHHHTCGGGCSEEEEESSSTTCSS---CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHH
T ss_pred             CCch-HhhcCCCcCCeEEEecccccccCC---CcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHH
Confidence            3322 2223332  4566  799999842   28899999888777542  1334445566666667778877543 468


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------CCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------NNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~iR  235 (266)
                      .++++++++++.+.|++ ++...    ..+.|.   ++++.++.  +.+..+++++|.++||.+.++.       .+++|
T Consensus       297 ~~~~~~~~~~l~~~L~~-~g~~~----~~~~g~---~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iR  366 (398)
T 3a2b_A          297 IEKLWKNTDYAKAQLLD-HGFDL----GATESP---ILPIFIRS--NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIR  366 (398)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCB----CSCCSS---EEEEECCC--HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEE
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCc----CCCCCC---EEEEEcCC--HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEE
Confidence            88999999999999988 53222    223467   99999875  5578899999999999998752       47899


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++..++++++++++++|+++++++
T Consensus       367 is~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          367 FSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            99888889999999999999998765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=4.2e-25  Score=193.28  Aligned_cols=232  Identities=14%  Similarity=0.148  Sum_probs=171.7

Q ss_pred             CCCCceeecCCC------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPYND------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~d------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++.++      +++|++++  .+++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++...
T Consensus       146 ~g~~~~~v~~~~~~~~~~~~~l~~~l--~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~  222 (409)
T 2gb3_A          146 AGVKLIPVTRRMEEGFAIPQNLESFI--NERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFR  222 (409)
T ss_dssp             HTCEEEEEECCGGGTSCCCTTGGGGC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred             cCCEEEEeccCCCCCCccHHHHHHhh--CcCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccC
Confidence            456777777653      67788887  3468989888888888876 78999999999999999999999999887554


Q ss_pred             Cccccc-cc-CCCCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hccHH
Q psy6547          90 GKLLAI-HY-EDVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMI  163 (266)
Q Consensus        90 g~~~~~-~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~  163 (266)
                      |..... .. .+.+..+.++||+++ +| +|+||+++++ ++.+.+.......+ +.+++.+.++.++|+...  -+++.
T Consensus       223 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~  300 (409)
T 2gb3_A          223 GEFASALSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVR  300 (409)
T ss_dssp             SCCCCGGGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCCCccccCCCCEEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHH
Confidence            432222 21 122233446899998 88 8999999988 88777664333333 778888888888885311  23467


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC------CceeccC--------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA------GLVTKPI--------  229 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gi~~~~~--------  229 (266)
                      ++++++++++.+.|++ ++.....  .+..|.   ++++.++.   .+..+++++|.++      ||.+.++        
T Consensus       301 ~~~~~~~~~l~~~L~~-~g~~~~~--~~~~~~---~~~~~~~~---~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~  371 (409)
T 2gb3_A          301 ETYRERVETVLKKLEE-HGLKRFT--KPSGAF---YITAELPV---EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPG  371 (409)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCCBC--CCSBSS---EEEEECSS---SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTT
T ss_pred             HHHHHHHHHHHHHHHH-cCceeee--CCCeeE---EEEEEeCC---CCHHHHHHHHHhccccccCcEEEeCchHhCCCCC
Confidence            7788888889888887 4322201  223466   77777752   3678899999987      9999864        


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                       +.+++|++++  ++++++++++++|+++++++..
T Consensus       372 ~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  404 (409)
T 2gb3_A          372 LGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFCS  404 (409)
T ss_dssp             TTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhhh
Confidence             2579999977  8999999999999999988654

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.92  E-value=2.4e-25  Score=197.03  Aligned_cols=229  Identities=10%  Similarity=0.056  Sum_probs=166.7

Q ss_pred             ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-cccccc-
Q psy6547          20 YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHY-   97 (266)
Q Consensus        20 v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~-   97 (266)
                      ++.+++++.+.+...+++.+++++|++++++|++|.+ ++.+.+++|+++|++||+++|+||+|++|...|. ...+.. 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~-~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  267 (449)
T 3qgu_A          189 IEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAA-ATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEI  267 (449)
T ss_dssp             EEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGS
T ss_pred             eEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhc
Confidence            7888876543443334333567888888888888876 8999999999999999999999999988765542 112222 


Q ss_pred             ---CCCCcCeeeeccccc-CCchhhhhheecHHhhhc--------cCCCCCCCCCCCcHHHHHHHHHHHHHHh---hccH
Q psy6547          98 ---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGT--------LVPGTHGSTYGGNPLACKLAMTALDVIL---EENM  162 (266)
Q Consensus        98 ---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~  162 (266)
                         .+..+.+.++||+++ +| +|+||+++++++++.        +.......+++++++++.++.++++...   .+++
T Consensus       268 ~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  346 (449)
T 3qgu_A          268 PGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAM  346 (449)
T ss_dssp             TTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHH
Confidence               234456777999999 89 999999998887652        2211233445788899998888886522   2457


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC------CCCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI------SNNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~iR  235 (266)
                      .++++++++++++.|++ ++   +.......|.   ++|+.++   +.+..+++++|+++ ||.+.|+      +.+++|
T Consensus       347 ~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~---~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iR  416 (449)
T 3qgu_A          347 IKFYKENAQILKTTFTE-MG---FSVYGGDDAP---YIWVGFP---GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVR  416 (449)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---CCEEESSSSS---EEEEECT---TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEE
T ss_pred             HHHHHHHHHHHHHHHHH-CC---CeeeCCCCee---EEEEECC---CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEE
Confidence            78888899999999887 43   3321222466   8888886   24678899888875 9999875      358999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         236 LSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++  +..+++++++++++|++++++..
T Consensus       417 is--~~~~~e~i~~~l~~l~~~~~~~~  441 (449)
T 3qgu_A          417 AS--AFGSRENILEAVRRFKEAYGKRN  441 (449)
T ss_dssp             EE--CCSCHHHHHHHHHHHHHHHC---
T ss_pred             EE--ecCCHHHHHHHHHHHHHHHHhcC
Confidence            99  55699999999999999886643

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.92  E-value=1.8e-24  Score=185.99  Aligned_cols=219  Identities=16%  Similarity=0.139  Sum_probs=164.4

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|++++++.++   +++++++++++|++|.+ ++.+.+++|+++|+ +|+++|+||+|+++....
T Consensus       120 ~g~~~~~v~~~~~~~~d~~~l~~~i~---~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~  194 (356)
T 1fg7_A          120 IGVECRTVPTLDNWQLDLQGISDKLD---GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQA  194 (356)
T ss_dssp             HTCEEEECCCCTTSCCCHHHHHTSCT---TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG
T ss_pred             cCCEEEEeeCCCCCCCCHHHHHHHhc---CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCC
Confidence            3556666664     37889988883   68889988888888876 89999999999999 999999999998775222


Q ss_pred             ccccc-ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hccHHHH
Q psy6547          91 KLLAI-HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMIEN  165 (266)
Q Consensus        91 ~~~~~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~  165 (266)
                      ..... +.++....+.++||+++ +| +|+||+++++++.+.+..  ...+++.+++++.++.++++..+   -++..++
T Consensus       195 ~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  271 (356)
T 1fg7_A          195 SLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQ  271 (356)
T ss_dssp             CSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHH--hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            22222 22344455667999998 88 999999999998877764  23455788999998888886543   2446677


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-CC----CCEEEEeccC
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-IS----NNIIRLSPAL  240 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~----~~~iR~~~~~  240 (266)
                      ++++++++.+.|++ ++. .... .++.|+   ++++.++     +..+++++|.++||.+++ +.    .+++|++++ 
T Consensus       272 ~~~~~~~l~~~L~~-~~~-~~~~-~~~~~~---~~~~~~~-----~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-  339 (356)
T 1fg7_A          272 IIAEREYLIAALKE-IPC-VEQV-FDSETN---YILARFK-----ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-  339 (356)
T ss_dssp             HHHHHHHHHHHHHH-STT-EEEE-CCCSSS---EEEEEET-----THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-
T ss_pred             HHHHHHHHHHHHHh-CCC-ceEE-CCCCCe---EEEEECC-----CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-
Confidence            78888888888887 441 0111 234567   8888875     467899999999999998 42    369999954 


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIIN  256 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~  256 (266)
                        +++++++++++|++
T Consensus       340 --~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          340 --TREESQRVIDALRA  353 (356)
T ss_dssp             --CHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHHh
Confidence              68999999998875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.91  E-value=1.8e-24  Score=189.03  Aligned_cols=230  Identities=19%  Similarity=0.155  Sum_probs=170.9

Q ss_pred             CCCCCCceeecCC----------------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547          14 GPHMPGYNIIPYN----------------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus        14 ~~~~~~v~~~~~~----------------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ...+.+++.++.+                |+++|++.+  .+++++|++++++|++|.+ ++.+++++|+++|++||+++
T Consensus       127 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~--~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~l  203 (410)
T 3e2y_A          127 RMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF--SSKTKAIILNTPHNPLGKV-YTRQELQVIADLCVKHDTLC  203 (410)
T ss_dssp             HHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEE
T ss_pred             HHcCCEEEEEeccccccccccccccCCcCCHHHHHhhc--CCCceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEE
Confidence            3445666666653                889999998  4578999998888888877 79999999999999999999


Q ss_pred             EEeccccCcCCcCccc-ccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKLL-AIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        78 i~De~~~~~~~~g~~~-~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      |+||+|+++.+.|..+ .+...    +..+.+.++||.++ +| +|+||+++++++++.+.......+++.+++.+.++.
T Consensus       204 i~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  282 (410)
T 3e2y_A          204 ISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALA  282 (410)
T ss_dssp             EEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             EEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence            9999998876555322 22222    23355667999999 88 999999999998888776556678888999999999


Q ss_pred             HHHHHH-------h--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-c--------chHH
Q psy6547         152 TALDVI-------L--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-I--------LEVY  213 (266)
Q Consensus       152 ~~l~~~-------~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~--------~~~~  213 (266)
                      .+++..       .  -+++.++++++++++.+.|++ ++   +....+..|.   ++|+.+.... .        .+..
T Consensus       283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  355 (410)
T 3e2y_A          283 EAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS-VG---LKPIVPDGGY---FIIADVSSLGADLSDMNSDEPYDY  355 (410)
T ss_dssp             HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT-TT---CEEEBCSBSS---EEEEECGGGCCCCTTCCSSCCHHH
T ss_pred             HHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCccE---EEEEEchhhhcccccccccccCHH
Confidence            888741       1  134667777788888888887 42   3221334577   8888775411 1        1234


Q ss_pred             HHHHHHH-HCCceeccCC-----------CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         214 DVCIKMK-DAGLVTKPIS-----------NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       214 ~~~~~l~-~~gi~~~~~~-----------~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +++.+++ ++||.+.|+.           .+++|++  +..+++++++++++|++
T Consensus       356 ~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          356 KFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             HHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence            7777664 6799998641           4799999  45699999999999975

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.91  E-value=1.2e-23  Score=182.35  Aligned_cols=234  Identities=14%  Similarity=0.104  Sum_probs=172.3

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.++++ ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++  +
T Consensus       120 ~g~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~De~~~-~g--~  191 (393)
T 3kgw_A          120 IGARVHQMIKKPGEHYTLQEVEEGLAQH-KPVLLFLVHGESSTGVVQ----PLDGFGELCHRYQCLLLVDSVAS-LG--G  191 (393)
T ss_dssp             TTCEEEEEECCTTCCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHHTTCEEEEECTTT-TT--T
T ss_pred             cCCceEEEeCCCCCCCCHHHHHHHHhhC-CCcEEEEeccCCcchhhc----cHHHHHHHHHHcCCEEEEECCcc-cc--C
Confidence            3556666663     4899999999542 578999999999999885    58899999999999999999995 21  1


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------------------CCCCCCCcHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------------HGSTYGGNPLAC  147 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~  147 (266)
                      ..+....++.+..+.++||+++++ .++|++++++++.+.+....                       ....++.+..++
T Consensus       192 ~~~~~~~~~~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (393)
T 3kgw_A          192 VPIYMDQQGIDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSL  270 (393)
T ss_dssp             SCCCTTTTTCCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHH
T ss_pred             cccchhhcCCCEEEecCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHH
Confidence            222333344333344466999877 77999999998887764321                       122345677788


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCC-cccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKA-SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-  222 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  222 (266)
                      +++.++++.+..   +++.++++++++++.+.|++ ++.... +......+.   ++++.++.  +.+..++.++|.++ 
T Consensus       271 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~~  344 (393)
T 3kgw_A          271 YCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-MGLKFFVKDPEIRLPT---ITTVTVPA--GYNWRDIVSYVLDHF  344 (393)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBSSSSGGGBCSS---EEEEECCT--TBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCeeccCChhhcCCe---EEEEeCCC--CCCHHHHHHHHHHhC
Confidence            888888887655   45788899999999999998 543222 111122345   67788765  56788999999988 


Q ss_pred             CceeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         223 GLVTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       223 gi~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ||.++++    ..+++|+++ +...+++++++++++|+++++++..+
T Consensus       345 gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~  391 (393)
T 3kgw_A          345 SIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN  391 (393)
T ss_dssp             CEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred             CEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            9999975    468999997 66679999999999999999876443

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.91  E-value=4.1e-24  Score=185.20  Aligned_cols=227  Identities=18%  Similarity=0.187  Sum_probs=174.9

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRT   89 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~   89 (266)
                      +...+.+++.+|++|+++|++.+++.+ +++++++++++|++|.+.    ++++|.++|++||+++|+||+|+.+  ++.
T Consensus       140 ~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~De~~~~~~~~~~  215 (384)
T 1bs0_A          140 ASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA----PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQ  215 (384)
T ss_dssp             HHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTTTTTSSGG
T ss_pred             HHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcc----CHHHHHHHHHHcCcEEEEECCcccceecCC
Confidence            334577889999999999999997543 478888998999999886    5899999999999999999999532  223


Q ss_pred             CcccccccCCCCcCee--eecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhh---ccH
Q psy6547          90 GKLLAIHYEDVRPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILE---ENM  162 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~---~~~  162 (266)
                      |..+. ..++..+|++  ++||++++   +.||+++++++.+.+...  ....+.+.+++.++++.++++.+..   +++
T Consensus       216 ~~~~~-~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  291 (384)
T 1bs0_A          216 GRGSC-WLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDAR  291 (384)
T ss_dssp             GCCHH-HHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CCchH-HhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHH
Confidence            33322 3345567777  69999983   348899998888776532  1223346788999999999988763   467


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------CCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------NNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~iR  235 (266)
                      .++++++++++.+.|++ ++   +.. ..+.|.   ++++.++.  +.+..+++++|.++||.+.++.       .+++|
T Consensus       292 ~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~---~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~R  361 (384)
T 1bs0_A          292 REKLAALITRFRAGVQD-LP---FTL-ADSCSA---IQPLIVGD--NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLR  361 (384)
T ss_dssp             HHHHHHHHHHHHHHHTT-SS---CEE-CSCCSS---BCCEEEES--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEC
T ss_pred             HHHHHHHHHHHHHHHHh-cC---Ccc-cCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEE
Confidence            88899999999999988 53   221 124566   88888875  4568899999999999998742       37899


Q ss_pred             EeccCCCCHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ++++..++++++++++++|+++
T Consensus       362 i~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          362 LTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             CBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCHHHHHHHHHHHHhh
Confidence            9999888999999999999864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.91  E-value=1.1e-23  Score=183.72  Aligned_cols=229  Identities=14%  Similarity=0.124  Sum_probs=171.4

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc--CcCCc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT--GLGRT   89 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~--~~~~~   89 (266)
                      ...+.+++.++++|+++|++++++.  +++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+  .+++.
T Consensus       150 ~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~~g~~~~~  225 (401)
T 2bwn_A          150 KRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFG----PIKEICDIAEEFGALTYIDEVHAVGMYGPR  225 (401)
T ss_dssp             HHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTTTTTSSTT
T ss_pred             HHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcC----CHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence            3457789999999999999999642  3689999999999999886    58999999999999999999997  24555


Q ss_pred             CcccccccCC----CCcCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh---c
Q psy6547          90 GKLLAIHYED----VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE---E  160 (266)
Q Consensus        90 g~~~~~~~~~----~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~---~  160 (266)
                      |..+. ...+    .++.+.++||++++.   .||+++++++.+.+....  ...+.+.+++.++++.++++.++.   +
T Consensus       226 g~~~~-~~~~~~~~~~i~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  301 (401)
T 2bwn_A          226 GAGVA-ERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQ  301 (401)
T ss_dssp             SCCHH-HHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHH
T ss_pred             Cceee-eccCccccCcEEEeechhhccCC---CCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccH
Confidence            54433 2223    244455799999832   377888887776654211  111223456788888889988765   3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC-------CC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS-------NN  232 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~-------~~  232 (266)
                      ++.++++++++++.+.|++ ++....    ...+.   ++++.++.  +.+..+++++|. ++||.+.++.       .+
T Consensus       302 ~~~~~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~~~~~~--~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~  371 (401)
T 2bwn_A          302 KLRDAQQMHAKVLKMRLKA-LGMPII----DHGSH---IVPVVIGD--PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTE  371 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCCBC----CCSSS---CEEEECCC--HHHHHHHHHHHHHHHCEECCEECTTTSCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCccc----CCCCC---eEEEEeCC--hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCc
Confidence            6788899999999999988 532222    12345   89998875  456788999996 7899997642       25


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++|++++..++++++++++++|++++++
T Consensus       372 ~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          372 RLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            8999999889999999999999998765

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.91  E-value=7.4e-23  Score=175.60  Aligned_cols=230  Identities=14%  Similarity=0.156  Sum_probs=169.5

Q ss_pred             CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.     .|+++|++++++++++++|++..++|++|.+.    ++++|.++|++||+++|+||+|+ ++... 
T Consensus       103 g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~-~~~~~-  176 (366)
T 1m32_A          103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLN----PIDEVGALAHRYGKTYIVDAMSS-FGGIP-  176 (366)
T ss_dssp             TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC----CHHHHHHHHHHHTCEEEEECTTT-TTTSC-
T ss_pred             CCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceec----CHHHHHHHHHHcCCEEEEECCcc-ccCcC-
Confidence            445666653     58999999997654578888888888889885    58999999999999999999995 32221 


Q ss_pred             ccccccCCCCcCee--eecccccCCchhhhhheecHHhhhccCCCCC------------------CCCCCCcHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH------------------GSTYGGNPLACKLAM  151 (266)
Q Consensus        92 ~~~~~~~~~~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~  151 (266)
                       +....+  .+|++  ++||+++++ .++|++++++++.+.+.....                  ...++.++..++++.
T Consensus       177 -~~~~~~--~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  252 (366)
T 1m32_A          177 -MDIAAL--HIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFA  252 (366)
T ss_dssp             -CCTTTT--TCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHH
T ss_pred             -cccccc--CccEEEecCcccccCC-CceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHH
Confidence             222222  35555  478999766 667999999998877764211                  113577888888888


Q ss_pred             HHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547         152 TALDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       152 ~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  227 (266)
                      ++++.+...    ++.++++++++++.+.|++ ++...........+.   ++++.+++..+.+..+++++|.++||.+.
T Consensus       253 ~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~gi~v~  328 (366)
T 1m32_A          253 QALKELAKEGGVAARHQRYQQNQRSLVAGMRA-LGFNTLLDDELHSPI---ITAFYSPEDPQYRFSEFYRRLKEQGFVIY  328 (366)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TTCCBSSCGGGBCSS---EEEEECCCCTTCCHHHHHHHHHHTTEECE
T ss_pred             HHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-CCCeeccCchhcCce---EEEEEcCccCCCCHHHHHHHHHHCCEEEE
Confidence            888876543    4788888999999999988 542222110012466   88888763112467889999999999998


Q ss_pred             cC---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 PI---SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 ~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++   ..+++|++++..++++++++++++|++++++
T Consensus       329 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          329 PGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             ECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            76   4689999999888999999999999988654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.91  E-value=2.9e-24  Score=188.08  Aligned_cols=236  Identities=13%  Similarity=0.119  Sum_probs=171.0

Q ss_pred             CCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          15 PHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        15 ~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      .....++.++.+      |+++|+  +  .++++++++++++|++|.+ ++.+.+++|+++|++||+++|+||+|..+. 
T Consensus       153 ~~~~~~~~~~~~~~~~~~d~~~l~--~--~~~~~~v~~~~p~NptG~~-~~~~~~~~l~~~a~~~~~~li~De~~~~~~-  226 (417)
T 3g7q_A          153 SARPNIELLPEGQFKYHVDFEHLH--I--GEETGMICVSRPTNPTGNV-ITDEELMKLDRLANQHNIPLVIDNAYGVPF-  226 (417)
T ss_dssp             ECCCEEEEEGGGEEEEECCGGGCC--C--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTTCTTT-
T ss_pred             cccCcccccCCcccccccCHHHhc--c--ccCceEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEeCCCcccc-
Confidence            344556666543      788887  4  4578999988888888876 899999999999999999999999996431 


Q ss_pred             cCccc-c--cccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-----c
Q psy6547          89 TGKLL-A--IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----E  160 (266)
Q Consensus        89 ~g~~~-~--~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~  160 (266)
                      .+..+ .  ....+....+.++||...+| +|+||+++++++.+.+....+..+++++++.+.++...++...-     +
T Consensus       227 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  305 (417)
T 3g7q_A          227 PGIIFSEARPLWNPNIILCMSLSKLGLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSET  305 (417)
T ss_dssp             TCCBCSCCCCCCCTTEEEEEESGGGTCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccCCCCCEEEEEechhccCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHH
Confidence            11111 1  11233445577799965588 99999999999988887655666777888888888877763211     1


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----------  230 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------  230 (266)
                      .+.++++++.+.+.+.|++.+....+....+..|.   ++|+.++.. +.+..++++.|.++||.+.++.          
T Consensus       306 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~---~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~  381 (417)
T 3g7q_A          306 VIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI---FLWLWFKDL-PITTELLYQRLKARGVLMVPGHYFFPGLDKPW  381 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS---EEEEECTTC-SSCHHHHHHHHHHTTEECEEGGGGCTTBSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce---EEEEEcCCC-CCCHHHHHHHHHHCCEEEECchhhCCCCcccc
Confidence            25556677777777777763333223321234577   888888641 2467899999999999998741          


Q ss_pred             ---CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         231 ---NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       231 ---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                         .+++|++++.  +++++++++++|.++++++.+
T Consensus       382 ~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~  415 (417)
T 3g7q_A          382 PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR  415 (417)
T ss_dssp             GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence               4699999764  999999999999999987653

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.91  E-value=1.4e-24  Score=186.86  Aligned_cols=225  Identities=16%  Similarity=0.132  Sum_probs=170.0

Q ss_pred             cCCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.     .|+++|++.+  .+++++|+++.++|++|.+ ++.+.+++|+++| ++|+++|+||+|+++.
T Consensus       123 ~~~~g~~~~~v~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~  198 (365)
T 3get_A          123 AKQCGAKCYKTQSITHNLDEFKKLYETH--KDEIKLIFLCLPNNPLGEC-LDASEATEFIKGV-NEDCLVVIDAAYNEFA  198 (365)
T ss_dssp             HHHHTCEEEECSSSSCCHHHHHHHHHHT--TTTEEEEEEESSCTTTCCC-CCHHHHHHHHHTS-CTTSEEEEECTTHHHH
T ss_pred             HHHcCCEEEEEecCCCCCCCHHHHHHHh--CCCCCEEEEcCCCCCCCCC-cCHHHHHHHHHhC-CCCcEEEEeCccHHHh
Confidence            3345667778776     4688999998  3578999998888888887 7888888888888 6799999999997664


Q ss_pred             C--cC-ccc-c---cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          88 R--TG-KLL-A---IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        88 ~--~g-~~~-~---~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      .  .+ ... .   ....+....+.++||+++ +| +|+||+++++++.+.+...  ..+++.+++++.++.++++..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~  275 (365)
T 3get_A          199 SFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDEF  275 (365)
T ss_dssp             HHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHHH
T ss_pred             cccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHH
Confidence            1  22 111 1   122344455667999998 88 9999999999888777642  33466889999998888874321


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC---CCEEE
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---NNIIR  235 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---~~~iR  235 (266)
                       ++..++++++++++.+.|++ ++   +.. ..+.|.   ++++.++.  . +..+++++|.++||.+.++.   .+++|
T Consensus       276 ~~~~~~~~~~~~~~l~~~l~~-~g---~~~-~~~~~~---~~~~~~~~--~-~~~~~~~~l~~~gi~v~~g~~~~~~~iR  344 (365)
T 3get_A          276 TEKTLENNFSQMELYKEFAKK-HN---IKI-IDSYTN---FITYFFDE--K-NSTDLSEKLLKKGIIIRNLKSYGLNAIR  344 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT---CEE-CCCSSS---EEEEECSS--S-CHHHHHHHHHTTTEECEECGGGTCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CC---CEE-CCCCCe---EEEEECCC--C-CHHHHHHHHHHCCEEEEECccCCCCEEE
Confidence             44677777888888888887 42   322 344577   88888876  3 68899999999999999875   68999


Q ss_pred             EeccCCCCHHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++++   ++++++++++.|++++
T Consensus       345 is~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          345 ITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             EECC---CHHHHHHHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHHh
Confidence            9954   8999999999998875

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.91  E-value=1.4e-23  Score=181.02  Aligned_cols=223  Identities=13%  Similarity=0.093  Sum_probs=167.4

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.+     |+++|++.+++. ++++|++++++|++|.+.    +++++.++|+.+++++|+||+|+++..
T Consensus       134 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~~~~l~~l~~~~~~~li~De~~~~~~~  208 (369)
T 3cq5_A          134 KGTHTEFIAVSRGADFRIDMDVALEEIRAK-QPDIVFVTTPNNPTGDVT----SLDDVERIINVAPGIVIVDEAYAEFSP  208 (369)
T ss_dssp             HHTTCEEEEEECCTTSSCCHHHHHHHHHHH-CCSEEEEESSCTTTCCCC----CHHHHHHHHHHCSSEEEEECTTGGGCC
T ss_pred             HHcCCEEEEecCCcCCCCCHHHHHHHhhcc-CCCEEEEeCCCCCCCCCC----CHHHHHHHHHhCCCEEEEECCchhhcC
Confidence            3346677777743     689999999542 578888888889999875    556677777777899999999987753


Q ss_pred             cCccccc-ccCC-CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547          89 TGKLLAI-HYED-VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIE  164 (266)
Q Consensus        89 ~g~~~~~-~~~~-~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~  164 (266)
                      ....... +.++ ..+.+.++||+++ +| +|+||+++++++.+.+...  ..+++.+++.+.++.++++..+. ++..+
T Consensus       209 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  285 (369)
T 3cq5_A          209 SPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVE  285 (369)
T ss_dssp             SCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHH
T ss_pred             CcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            2222221 2334 4466777999998 88 8999999999888877643  33567899999998888875321 45777


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-CCEEEEeccCCCC
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNIT  243 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~~~~t  243 (266)
                      +++++++++.+.|++ .+   +.. .++.|.   ++++.++.    +..++.++|.++||.+.+++ .+++|++++   +
T Consensus       286 ~~~~~~~~l~~~L~~-~g---~~~-~~~~~~---~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~  350 (369)
T 3cq5_A          286 KLSVERVRVAARLEE-LG---YAV-VPSESN---FVFFGDFS----DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---V  350 (369)
T ss_dssp             HHHHHHHHHHHHHHH-HT---CEE-ECCSSS---EEEEECCS----SHHHHHHHHHHTTEECBCCSCTTEEEEECC---C
T ss_pred             HHHHHHHHHHHHHHh-CC---CEE-CCCCCe---EEEEECCC----CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---C
Confidence            888888888888887 43   332 334566   88887763    57789999999999999863 579999965   8


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTIN  259 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~  259 (266)
                      ++++++++++|+++++
T Consensus       351 ~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          351 PEENDAFLDAAAEIIK  366 (369)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.91  E-value=1.9e-23  Score=182.31  Aligned_cols=233  Identities=13%  Similarity=0.094  Sum_probs=173.8

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+.+++.++.+     |+++|+++++++ ++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+ ++. 
T Consensus       109 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~-~~~-  181 (411)
T 3nnk_A          109 RCRAEVHTIEVPWGEVFTPDQVEDAVKRI-RPRLLLTVQGDTSTTMLQ----PLAELGEICRRYDALFYTDATAS-LGG-  181 (411)
T ss_dssp             HTTCEEEEEECCTTCCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHHHTCEEEEECTTT-BTT-
T ss_pred             HcCCeEEEEecCCCCCCCHHHHHHHHhhC-CCeEEEEeCCCCCcceec----cHHHHHHHHHHcCCEEEEECCcc-cCC-
Confidence            346678888766     899999999543 578999999999999885    58899999999999999999985 211 


Q ss_pred             CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC----------------------------------
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----------------------------------  135 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~----------------------------------  135 (266)
                       ..+....++.+..+.+++|+++++ .++|++++++++.+.+....                                  
T Consensus       182 -~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~  259 (411)
T 3nnk_A          182 -NPLETDVWGLDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWG  259 (411)
T ss_dssp             -BCCCTTTTTCSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHS
T ss_pred             -cccchhccCCcEEEecCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhc
Confidence             223333344444444577998877 78899999998876654321                                  


Q ss_pred             --CCCCCCCcHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccc
Q psy6547         136 --HGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAIL  210 (266)
Q Consensus       136 --~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  210 (266)
                        .....+.+...++++.++++.+..+   ++.++++++++++.+.|++ ++...........+.   ++++.+++  +.
T Consensus       260 ~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--~~  333 (411)
T 3nnk_A          260 PERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA-MGLETFGDLKHKMNN---VLGVVIPQ--GI  333 (411)
T ss_dssp             TTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBCSCGGGBCSS---EEEEECCT--TC
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCEeCCCccccccc---EEEEECCC--CC
Confidence              1123456777788888888876653   5788889999999999988 543322221122456   88888875  55


Q ss_pred             hHHHHHHHHHHC-CceeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         211 EVYDVCIKMKDA-GLVTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       211 ~~~~~~~~l~~~-gi~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +..+++++|.++ ||.++++    .++++|+++ +..++++++++++++|+++++++.
T Consensus       334 ~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          334 NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence            788999999876 9999874    457999997 667799999999999999988753

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.91  E-value=3.9e-24  Score=187.53  Aligned_cols=235  Identities=11%  Similarity=0.131  Sum_probs=170.0

Q ss_pred             cccCCCCCCceeecC------CCHHHHHHHHhcC---CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHH------hcC
Q psy6547          11 NEFGPHMPGYNIIPY------NDVDALEAKLKSN---PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCS------QYN   74 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~------~d~~~l~~~l~~~---~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~------~~g   74 (266)
                      ..+...+.+++.++.      .|+++|++.+++.   +..++++++++ +|++|.+ ++.+.+++|+++|+      +||
T Consensus       141 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~-~~~~~l~~l~~~~~~~~~~~~~~  219 (418)
T 3rq1_A          141 VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYS-IEDKDWDSILNFLKDLVAIGRNN  219 (418)
T ss_dssp             HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTSSCE
T ss_pred             HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhhhccCCC
Confidence            334556777888874      2799999999642   34447777766 8888877 89999999999999      899


Q ss_pred             CEEEEeccccCcCCcCc---ccccccCCCCcC---e--eeeccccc-CCchhhhhhee---cHHhhhccCCCCCC----C
Q psy6547          75 VLFIADEVQTGLGRTGK---LLAIHYEDVRPD---I--VILGKALS-GGLYPISAVLA---DDEVMGTLVPGTHG----S  138 (266)
Q Consensus        75 ~~li~De~~~~~~~~g~---~~~~~~~~~~~d---~--~~~sK~~~-~g~~~~g~~~~---~~~~~~~~~~~~~~----~  138 (266)
                      +++|+||+|.+|...|.   .+.....++.++   +  .++||.++ +| +|+||+++   ++++.+.+......    .
T Consensus       220 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (418)
T 3rq1_A          220 VIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFEVNKSTSRAT  298 (418)
T ss_dssp             EEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence            99999999988876553   122222344444   2  36999998 88 99999998   88888777643211    1


Q ss_pred             CCCCcHHHHHHHHHHHHHH------hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccc
Q psy6547         139 TYGGNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAIL  210 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  210 (266)
                      ....+.+++.++..+++..      ..  ++++++++++++++.+.|++ ++....   ....|.   ++|+.+.     
T Consensus       299 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~~~~~~~-----  366 (418)
T 3rq1_A          299 WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-VGLPML---PYRGGF---FITIPTD-----  366 (418)
T ss_dssp             TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCC---CCCSSS---EEEEECT-----
T ss_pred             cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC---CCCceE---EEEcCCC-----
Confidence            2346778888877777432      11  24567778888888888887 543222   223455   5665542     


Q ss_pred             hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       211 ~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +..++++.|.++||.+.|+ .+++|+++. ..+++++++++++|+++++++
T Consensus       367 ~~~~~~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          367 SANAICEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             THHHHHHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999997 678999955 469999999999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.91  E-value=1.3e-23  Score=180.51  Aligned_cols=228  Identities=13%  Similarity=0.064  Sum_probs=168.5

Q ss_pred             ccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          12 EFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      .+...+.+++.++.+     +++++++.++  + +++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~--~-~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~  189 (361)
T 3ftb_A          114 NAKKHGVSVVFSYLDENMCIDYEDIISKID--D-VDSVIIGNPNNPNGGL-INKEKFIHVLKLAEEKKKTIIIDEAFIEF  189 (361)
T ss_dssp             HHHHTTCEEEEEECCTTSCCCHHHHHHHTT--T-CSEEEEETTBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECSSGGG
T ss_pred             HHHHcCCeEEEeecCcccCCCHHHHHHhcc--C-CCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhhcCCEEEEECcchhh
Confidence            344456777777743     5689999994  3 7788877778888876 89999999999999999999999999877


Q ss_pred             CCcCcccccccCCC---CcCeeeeccccc-CCchhhhhhe-ecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-c
Q psy6547          87 GRTGKLLAIHYEDV---RPDIVILGKALS-GGLYPISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-E  160 (266)
Q Consensus        87 ~~~g~~~~~~~~~~---~~d~~~~sK~~~-~g~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~  160 (266)
                      ...+........+.   ...+.++||.++ +| +|+||++ .++++.+.+...  ..+++.++++++++.++++..+. +
T Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~  266 (361)
T 3ftb_A          190 TGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKDTNYIE  266 (361)
T ss_dssp             TCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSCHHHHH
T ss_pred             cCCcccchhHhcccCCCEEEEeeChhhcCCCC-cceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcCHHHHH
Confidence            54311111222222   233446999999 88 9999988 888888887753  34678899999998888864211 3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNI  233 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~  233 (266)
                      +..++++++++++.+.|++ ++  .+. . ..+.|.   ++++.++.   .+..++++.|.++||.++++.      .++
T Consensus       267 ~~~~~~~~~~~~l~~~l~~-~~--~~~~~-~~~~~~---~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~  336 (361)
T 3ftb_A          267 ESLLWIKKERKRFIEELNK-IG--FIKRV-FSPHAN---FVLCRLEN---ISGEKLYDSLLKEDIVIRRCCNFIGLDDSF  336 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-SS--SEEEE-ECCSSS---EEEEEESS---SCHHHHHHHHHTTTEECEECTTSTTCCTTE
T ss_pred             HHHHHHHHHHHHHHHHHHh-CC--CCcee-cCCCCe---EEEEEcCC---CCHHHHHHHHHHCCeEEeeCccCCCCCCCE
Confidence            4666777778888888776 42  233 2 345677   88888765   367889999999999998752      589


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +|++++   ++++++++++.|++..+
T Consensus       337 iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          337 VRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             EEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC---CHHHHHHHHHHHHHHHh
Confidence            999954   88888888888887764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.91  E-value=4.1e-24  Score=184.10  Aligned_cols=227  Identities=14%  Similarity=0.137  Sum_probs=162.3

Q ss_pred             CCCCCceeecCCC------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          15 PHMPGYNIIPYND------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        15 ~~~~~v~~~~~~d------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ..+.+++.++.+.      ++++.+.+  .+++++++++.++|++|.+ ++.+++++|+++|++||+++|+||+|+++..
T Consensus       117 ~~g~~~~~v~~~~~~~~~~l~~~~~~~--~~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  193 (364)
T 1lc5_A          117 QSGCEIRRWSLREADGWQLTDAILEAL--TPDLDCLFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIP  193 (364)
T ss_dssp             HTTCEEEEEECCGGGTTCCCTTHHHHC--CTTCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGST
T ss_pred             HcCCeEEEEeCCcccccchhHHHHHhc--cCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhcc
Confidence            3466777777642      24344444  3456777765568888876 8999999999999999999999999987754


Q ss_pred             cCcc-cc-cccCCCCcCeeeeccccc-CCchhhhhhe-ecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHH
Q psy6547          89 TGKL-LA-IHYEDVRPDIVILGKALS-GGLYPISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMI  163 (266)
Q Consensus        89 ~g~~-~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~  163 (266)
                      .+.. .. .+..+.++.+.++||+++ +| +|+||++ +++++.+.+...  ..+++.+++++.++.++|+..+ -++..
T Consensus       194 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (364)
T 1lc5_A          194 HETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQDSAWQQATW  270 (364)
T ss_dssp             TCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGCHHHHHHHH
T ss_pred             CccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhCcHHHHHHH
Confidence            3322 11 122344555667999998 89 9999999 899888776542  2367789999988888886421 13456


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCEEEEe
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNIIRLS  237 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~iR~~  237 (266)
                      ++++++++++.+.|++ ++  .+.. .++.|.   ++++.++.    +..+++++|.++||.+.++.      .+++|++
T Consensus       271 ~~~~~~~~~l~~~L~~-~~--~~~~-~~~~g~---~~~~~~~~----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis  339 (364)
T 1lc5_A          271 HWLREEGARFYQALCQ-LP--LLTV-YPGRAN---YLLLRCER----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVA  339 (364)
T ss_dssp             HHHHHHHHHHHHHHHT-ST--TEEE-CCCSSS---EEEEEESC----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHhc-CC--CCEE-CCCCCe---EEEEECCC----cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEE
Confidence            6677778888888876 42  2222 234567   88888765    34578999999999998752      5799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         238 PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       238 ~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +   .++++++++++.|+++++++
T Consensus       340 ~---~~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          340 I---RSAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             C---CCHHHHHHHHHHHHHHC---
T ss_pred             e---CCHHHHHHHHHHHHHHhhcc
Confidence            3   37889999999999887664

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.90  E-value=1.8e-22  Score=174.45  Aligned_cols=233  Identities=14%  Similarity=0.124  Sum_probs=171.7

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.+     |+++|++.++++ ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.. .
T Consensus        97 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~~~-~  170 (384)
T 3zrp_A           97 KRYPVNVKVLRPSPGDYVKPGEVEEEVRKS-EYKLVALTHVETSTGVRE----PVKDVINKIRKYVELIVVDGVSSVG-A  170 (384)
T ss_dssp             TTSSCEEEEECCSTTCCCCHHHHHHHHHHS-CEEEEEEESEETTTTEEC----CHHHHHHHHGGGEEEEEEECTTTTT-T
T ss_pred             HHcCCcEEEecCCCCCCCCHHHHHHHHHhC-CCcEEEEeCCCCCCceEC----cHHHHHHHHHhcCCEEEEECccccc-C
Confidence            3456778888765     899999999653 589999999999999886    5999999999999999999999521 1


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc-CCC-----------------C----CCCCC-CCcHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-VPG-----------------T----HGSTY-GGNPL  145 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~-~~~-----------------~----~~~~~-~~~~~  145 (266)
                        ..+....++.+..+.+++|+++++ .++|++++++++.+.+ ...                 .    ....+ +.+..
T Consensus       171 --~~~~~~~~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  247 (384)
T 3zrp_A          171 --EEVKAEEWNVDVYLTASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVH  247 (384)
T ss_dssp             --SCCCTTTTTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHH
T ss_pred             --ccccccccCCCEEEecCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHH
Confidence              112223333333334466999877 7799999999887766 110                 0    22222 45666


Q ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCccc-EEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547         146 ACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFK-LSSGGLKKSINTLILSVSAILEVYDVCIKMKD  221 (266)
Q Consensus       146 ~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  221 (266)
                      .+.++.++++.+..   +++.++++++++++.+.|++ ++....... ....+.   ++++.++.   .+..++++.|.+
T Consensus       248 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~  320 (384)
T 3zrp_A          248 VILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-LGLEIVARRPESYSNT---VTGVILKV---ADPQKVLAGTVN  320 (384)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBSCSSGGGBCSS---EEEEECSS---SCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-CCCeEccCcccccCcc---EEEEECCC---CCHHHHHHHHHH
Confidence            77777777876654   36788889999999999998 443222210 112355   77888765   467899999999


Q ss_pred             CCceeccCC-C--CEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         222 AGLVTKPIS-N--NIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       222 ~gi~~~~~~-~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +||.++++. .  +++|++++..++++++++++++|+++++++.
T Consensus       321 ~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          321 EGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             TTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence            999998763 1  7899999988999999999999999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=8.7e-23  Score=176.85  Aligned_cols=221  Identities=15%  Similarity=0.185  Sum_probs=166.2

Q ss_pred             CCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHH----hcCCEEEEeccccC
Q psy6547          17 MPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS----QYNVLFIADEVQTG   85 (266)
Q Consensus        17 ~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~----~~g~~li~De~~~~   85 (266)
                      +.+++.++.+       |+++|++.+  .+++++|++++++|++|.+.    ++++|.++|+    +||+++|+||+|+ 
T Consensus       126 g~~~~~v~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~~~~li~Dea~~-  198 (390)
T 1elu_A          126 GITYRFFPVAATLNQGDAAAVLANHL--GPKTRLVILSHLLWNTGQVL----PLAEIMAVCRRHQGNYPVRVLVDGAQS-  198 (390)
T ss_dssp             CCEEEEECCGGGSSSSCHHHHHHTTC--CTTEEEEEEESBCTTTCCBC----CHHHHHHHHHHCCSSSCCEEEEECTTT-
T ss_pred             CcEEEEEcCCCCCCccchHHHHHHhc--CCCceEEEEeccccCCceec----CHHHHHHHHhhhhhhcCcEEEEEcccc-
Confidence            5567777763       688898888  45789999999999999886    4999999999    9999999999995 


Q ss_pred             cCCcCcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCC----------------------CCCCCC
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT----------------------HGSTYG  141 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~----------------------~~~~~~  141 (266)
                      ++..  .+...  ...+|+++  +||++.+| .++|++++++++.+.+....                      .....+
T Consensus       199 ~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (390)
T 1elu_A          199 AGSL--PLDFS--RLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVAT  273 (390)
T ss_dssp             BTTB--CCCTT--TSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSC
T ss_pred             cCCc--CCChh--hcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCC
Confidence            4322  12222  23455555  99988888 78999999998887776421                      112345


Q ss_pred             CcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547         142 GNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAILEVYDVC  216 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  216 (266)
                      .+++.+.++.++++.+..+    ++.++++++++++.+.|++ +. ...+.. ..+.|.   ++.+.++.  +.+..+++
T Consensus       274 ~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~~~~~~---~~~~~~~~--~~~~~~~~  346 (390)
T 1elu_A          274 SAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLAT-SAPQAG---LVSFTVDS--PLGHRAIV  346 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCS-SCCSSS---EEEEEECS--SSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecC-cccccc---EEEEEcCC--CCCHHHHH
Confidence            6777777777888876553    3678888888999998887 42 211111 134566   88888864  45678899


Q ss_pred             HHHHHCCceeccCC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         217 IKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       217 ~~l~~~gi~~~~~~-~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      ++|.++||.+.++. .+++|++++...+++++++++++|++
T Consensus       347 ~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          347 QKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             HHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence            99999999999874 68999999888999999999999875

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.90  E-value=5.4e-24  Score=187.43  Aligned_cols=226  Identities=10%  Similarity=0.059  Sum_probs=162.0

Q ss_pred             CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547          18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   97 (266)
Q Consensus        18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~   97 (266)
                      .+++.++.++.+.+...+++.+++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++...+....+..
T Consensus       176 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~-~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~  254 (432)
T 3ei9_A          176 GNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAA-ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFE  254 (432)
T ss_dssp             TTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGG
T ss_pred             CceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhh
Confidence            367777775433332234444567888887788888876 8999999999999999999999999987744333222221


Q ss_pred             ----CCCCcCeeeeccccc-CCchhhhhheecHHh--------hhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hcc
Q psy6547          98 ----EDVRPDIVILGKALS-GGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EEN  161 (266)
Q Consensus        98 ----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~  161 (266)
                          .+....+.++||+++ +| +|+||+++++++        .+.+........++.+++++.++.+++....   .++
T Consensus       255 ~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  333 (432)
T 3ei9_A          255 IPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHK  333 (432)
T ss_dssp             STTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHH
T ss_pred             cCCCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHH
Confidence                123455667999999 99 999999998876        3444322233455678888888888775321   245


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC------CCCE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI------SNNI  233 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~  233 (266)
                      +.++++++++++.+.|++ ++   +.. .. ..|.   ++|+.++.   .+..+++.+|++ +||.+.|+      +.++
T Consensus       334 ~~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~~---~~~~~~~~---~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~  402 (432)
T 3ei9_A          334 VIGFYKENTNIIIDTFTS-LG---YDV-YGGKNAP---YVWVHFPN---QSSWDVFAEILEKTHVVTTPGSGFGPGGEGF  402 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---CCE-EECSSSS---EEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTE
T ss_pred             HHHHHHHHHHHHHHHHHH-CC---cee-cCCCcce---EEEEECCC---CCHHHHHHHHHHHCCEEEeCchHhCCCCCCE
Confidence            778888888899888887 43   322 22 3566   88888873   356788888875 49999874      3689


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +|++  +.++++++++++++|++.-
T Consensus       403 iRis--~~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          403 VRVS--AFGHRENILEACRRFKQLY  425 (432)
T ss_dssp             EEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred             EEEE--ecCCHHHHHHHHHHHHHHh
Confidence            9999  4679999999999998754

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.90  E-value=1e-24  Score=190.26  Aligned_cols=234  Identities=11%  Similarity=0.081  Sum_probs=160.9

Q ss_pred             CCCC-ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-cc
Q psy6547          16 HMPG-YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LL   93 (266)
Q Consensus        16 ~~~~-v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~   93 (266)
                      .+.+ ++.++.++-+.+...+++.+++++|++++++|++|.+ ++.+.+++|+++|+++|+++|+||+|+++...|. ..
T Consensus       138 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~  216 (400)
T 3asa_A          138 TGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPK  216 (400)
T ss_dssp             TTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCS
T ss_pred             cCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCC
Confidence            4555 7777764211111112221467888887788888877 8999999999999999999999999987754443 12


Q ss_pred             ccccCC----CCcCeeeeccccc-CCchhhhhheecHHh-------hhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhhc
Q psy6547          94 AIHYED----VRPDIVILGKALS-GGLYPISAVLADDEV-------MGTLVPGTHGSTY-GGNPLACKLAMTALDVILEE  160 (266)
Q Consensus        94 ~~~~~~----~~~d~~~~sK~~~-~g~~~~g~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~  160 (266)
                      .....+    ..+.+.++||+++ +| +|+||+++++++       ++.+.......++ +.+++++.++..+|+....+
T Consensus       217 ~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  295 (400)
T 3asa_A          217 SIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQL  295 (400)
T ss_dssp             SGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred             chhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHH
Confidence            222222    2344667999998 89 999999998877       3333211122233 57888888888888764345


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEE-EeeCccchHHHHHHHHHH-CCceeccC------CC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLI-LSVSAILEVYDVCIKMKD-AGLVTKPI------SN  231 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~  231 (266)
                      ++.++++++++++.+.|++ ++   +.. ..+ .|.   ++|+. ++.  +.++.+++++|++ +||.+.++      +.
T Consensus       296 ~~~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~~---~~~~~~~~~--~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~  365 (400)
T 3asa_A          296 EAIHYYRENSDLLRKALLA-TG---FEV-FGGEHAP---YLWVKPTQA--NISDRDLFDFFLREYHIAITPGIGFGRSGS  365 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT---CEE-EECSSSS---EEEEECCCT--TCCTTTHHHHHHHHHSEECEEGGGGCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHH-CC---Cee-eCCCCce---EEEEeccCC--CCCHHHHHHHHHHhCCEEEeChhHhCCCCC
Confidence            6888899999999999987 42   322 222 466   89998 765  4455678888875 59999875      25


Q ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         232 NIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +++|++  +..+++++++++++|++++++...
T Consensus       366 ~~iRis--~~~~~e~i~~~l~~l~~~~~~~~~  395 (400)
T 3asa_A          366 GFVRFS--SLGKREDILAACERLQMAPALQSH  395 (400)
T ss_dssp             TCEEEE--CCSCHHHHHHHHHHHHC-------
T ss_pred             CEEEEE--eeCCHHHHHHHHHHHHHHHHhhhh
Confidence            789999  568999999999999999877543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.90  E-value=7.7e-24  Score=182.41  Aligned_cols=229  Identities=11%  Similarity=0.123  Sum_probs=171.1

Q ss_pred             CCCCCCceeec--CC-----CHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          14 GPHMPGYNIIP--YN-----DVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        14 ~~~~~~v~~~~--~~-----d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ...+.+++.++  .+     |+++|++.++++   ++++++++++++|++|.+.    ++++|.++|++||+++|+||+|
T Consensus       111 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~----~~~~i~~~~~~~~~~li~D~a~  186 (371)
T 2e7j_A          111 ERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP----DVKKIAKVCSEYDVPLLVNGAY  186 (371)
T ss_dssp             HHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC----CHHHHHHHHHTTTCCEEEECTT
T ss_pred             HHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC----CHHHHHHHHHHcCCeEEEECcc
Confidence            33466788888  65     899999999643   5789999999999999886    5799999999999999999999


Q ss_pred             cCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhc-cCCCCC--CC-----CCCCcHHHHHHHHHHHH
Q psy6547          84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT-LVPGTH--GS-----TYGGNPLACKLAMTALD  155 (266)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~a~~~~l~  155 (266)
                      +.+ ..+  +....++.+..+.++||++++| .++|++++++++.+. +.....  ..     +.+.++..++++.++++
T Consensus       187 ~~~-~~~--~~~~~~~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  262 (371)
T 2e7j_A          187 AIG-RMP--VSLKEIGADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP  262 (371)
T ss_dssp             TBT-TBC--CCHHHHTCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH
T ss_pred             ccC-CCC--CChhhcCCCEEEecCCcCCCCC-CCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHH
Confidence            643 221  2223334344444589999988 799999999988776 665433  22     45667777777878888


Q ss_pred             HHhhccHHHHH--HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547         156 VILEENMIENA--YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       156 ~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      .+.. ++.+++  +++++++.+.|++ ++...... ....+.   ++++.++     +..++.+.|.++||.+.+.    
T Consensus       263 ~~~~-~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~~~---~~~~~~~-----~~~~~~~~l~~~gi~~~~~~~~~  331 (371)
T 2e7j_A          263 HVRE-RIKRWDEEVEKARRFAAEMEK-LGIKQLGD-NPHNHD---LMFFHAE-----VLYEISKKAKGGRFFLYRELKSR  331 (371)
T ss_dssp             HHHH-HGGGHHHHHHHHHHHHHHHHH-TTCEEESS-SSCCSS---EEEEECH-----HHHHHHHHSSSGGGHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHH-cCcEEecC-CCccCc---eEEEECC-----CHHHHHHHHHHCCEEEEeccccc
Confidence            7765 677788  8899999999987 42211111 111355   8888875     4678999999999998761    


Q ss_pred             ---C--CCEEE-EeccCC-CCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ---S--NNIIR-LSPALN-ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ---~--~~~iR-~~~~~~-~t~~~i~~~~~~l~~~~~~~  261 (266)
                         +  .+++| ++++.. ++++++++++++|+++++++
T Consensus       332 ~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          332 KIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             TEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence               1  57899 998877 89999999999999998753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=3.6e-23  Score=179.34  Aligned_cols=226  Identities=13%  Similarity=0.105  Sum_probs=161.7

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC--
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--   87 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~--   87 (266)
                      ..+.+++.++.+     |+++|++.+++. +++++++++++|++|.+.    ++++|.++|++||+++|+||+|+++.  
T Consensus       142 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~~~~~~  216 (397)
T 3f9t_A          142 MMDLEYIYAPIKEDYTIDEKFVKDAVEDY-DVDGIIGIAGTTELGTID----NIEELSKIAKENNIYIHVDAAFGGLVIP  216 (397)
T ss_dssp             HHTCEEEEECBCTTSSBCHHHHHHHHHHS-CCCEEEEEBSCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTGGGTGG
T ss_pred             HcCceeEEEeeCCCCcCCHHHHHHHHhhc-CCeEEEEECCCCCCCCCC----CHHHHHHHHHHhCCeEEEEccccchhhh
Confidence            346678888876     899999999653 578888888888899885    69999999999999999999997642  


Q ss_pred             CcCc---------ccccccCCCCcCeeeecccccCCchhhhhheecHH-hhhccC---CCCC--------CCCCCCcHHH
Q psy6547          88 RTGK---------LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDE-VMGTLV---PGTH--------GSTYGGNPLA  146 (266)
Q Consensus        88 ~~g~---------~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~-~~~~~~---~~~~--------~~~~~~~~~~  146 (266)
                      ..+.         .+.... +.+..+.+++|++++| .++|+++++++ +.+.+.   ....        +.....+.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (397)
T 3f9t_A          217 FLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGAC  294 (397)
T ss_dssp             GCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHH
T ss_pred             hcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHH
Confidence            2222         223333 5555566688999888 79999887554 444432   1111        1112234455


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      +.++...+....-++..++++++++++.+.|++ ++...+.   .+.+.   ++++..+.     ..++.+.|.++||.+
T Consensus       295 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~---~~~~~---~~~~~~~~-----~~~~~~~l~~~gi~v  362 (397)
T 3f9t_A          295 TYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-NNFKPVI---EPILN---IVAIEDED-----YKEVCKKLRDRGIYV  362 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCBSS---CCSSS---EEEEECTT-----HHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEc---CCCcc---EEEEEeCC-----HHHHHHHHHhCCeEE
Confidence            555555554333356778888999999999998 4322221   23455   77776644     678999999999999


Q ss_pred             ccCC-CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         227 KPIS-NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       227 ~~~~-~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .++. ++++|++++..++++++++++++|+++++
T Consensus       363 ~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          363 SVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             EECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             eccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            9874 58999999988999999999999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.90  E-value=2e-22  Score=174.87  Aligned_cols=230  Identities=14%  Similarity=0.102  Sum_probs=168.1

Q ss_pred             CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.     .|+++|++.+++++++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++..  
T Consensus       106 g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~-~g~~--  178 (392)
T 2z9v_A          106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTIN----PIDAIGALVSAHGAYLIVDAVSS-FGGM--  178 (392)
T ss_dssp             CSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEEC----CHHHHHHHHHHTTCEEEEECTTT-BTTB--
T ss_pred             CCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceec----cHHHHHHHHHHcCCeEEEEcccc-cCCc--
Confidence            556777775     38999999996555788999999999999886    58999999999999999999995 3221  


Q ss_pred             ccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC--------------------CCCCCCCCcHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG--------------------THGSTYGGNPLACKL  149 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~a  149 (266)
                      .+....++  +|+++  +||+++++ .++|++++++++.+.+...                    ......+.+...+.+
T Consensus       179 ~~~~~~~~--~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  255 (392)
T 2z9v_A          179 KTHPEDCK--ADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEING  255 (392)
T ss_dssp             SCCGGGGT--CSEEEECSSSTTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHH
T ss_pred             cccccccc--ceEEEecCcccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHH
Confidence            12223333  45544  78988865 5679999998887655321                    012234556667777


Q ss_pred             HHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cc
Q psy6547         150 AMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GL  224 (266)
Q Consensus       150 ~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi  224 (266)
                      +.++++.+...   ++.++++++++++++.|++ ++..... ......+.   ++++.++.  +.+..+++++|.++ ||
T Consensus       256 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~l~~~L~~~~gi  329 (392)
T 2z9v_A          256 LDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-MGLSVWAASDSIASPT---TTAVRTPD--GVDEKALRQAARARYGV  329 (392)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBSSSSGGGBCTT---EEEEECCT--TCCHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cCCeeccCCccccCCc---eEEEECCC--CCCHHHHHHHHHhcCCE
Confidence            77788776543   5778888999999999988 5332222 10012355   78888864  45678999999987 99


Q ss_pred             eeccC----CCCEEEEeccC-CCCHHHHHHHHHHHHHHHHHHh
Q psy6547         225 VTKPI----SNNIIRLSPAL-NITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       225 ~~~~~----~~~~iR~~~~~-~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+.++    ..+++|+++.. .++++++++++++|+++++++.
T Consensus       330 ~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          330 VFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             ECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence            99875    36899999644 7899999999999999988753

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.90  E-value=4.1e-23  Score=180.81  Aligned_cols=236  Identities=13%  Similarity=0.114  Sum_probs=166.3

Q ss_pred             CCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.++.       .|+++|++.++  +++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|+++.
T Consensus       147 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~  223 (416)
T 1bw0_A          147 AYGIGMHFYNCRPENDWEADLDEIRRLKD--DKTKLLIVTNPSNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMV  223 (416)
T ss_dssp             HTTCEEEEEEEEGGGTTEECHHHHHHHCC--TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred             HcCcEEEEeecCcccCCCCCHHHHHHHhc--cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            34566777663       37999999993  457777766668888876 899999999999999999999999998875


Q ss_pred             CcCc----cc-ccccCCC---CcCeeeeccccc-CCchhhhhheecHH--hhhccCCC---CCCCCCCCcHHHHHHHHHH
Q psy6547          88 RTGK----LL-AIHYEDV---RPDIVILGKALS-GGLYPISAVLADDE--VMGTLVPG---THGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        88 ~~g~----~~-~~~~~~~---~~d~~~~sK~~~-~g~~~~g~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~a~~~~  153 (266)
                      ..|.    .+ .+...+.   ...+.++||+++ +| +|+||++++++  +++.+...   ....+++.++++++++.++
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  302 (416)
T 1bw0_A          224 FKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEA  302 (416)
T ss_dssp             CCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             cCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHH
Confidence            4443    11 2222221   223446999987 78 99999998653  33322210   1123567889999999888


Q ss_pred             HHHHh---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCcee
Q psy6547         154 LDVIL---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGLVT  226 (266)
Q Consensus       154 l~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi~~  226 (266)
                      |+...   -++..++++++++++.+.|++ +.  .+....+..|+   ++|+.++..   ...+..+++++|+ ++||.+
T Consensus       303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v  376 (416)
T 1bw0_A          303 LLNTPQEHLDQIVAKIEESAMYLYNHIGE-CI--GLAPTMPRGAM---YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQV  376 (416)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHHHHHHTT-ST--TEEECCCCBTT---EEEEEECGGGBSSCCSHHHHHHHHHHHHCEEC
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcccCCCeeE---EEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEE
Confidence            87421   134677788888888888887 42  22221123466   888887631   0135788999885 889999


Q ss_pred             ccCC----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         227 KPIS----NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       227 ~~~~----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .++.    .+++|+++  ..+++++++++++|.+++++..
T Consensus       377 ~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~~~~  414 (416)
T 1bw0_A          377 LPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRHA  414 (416)
T ss_dssp             EEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHB
T ss_pred             ecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence            8752    57999996  4789999999999999998754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.90  E-value=1.2e-22  Score=173.42  Aligned_cols=227  Identities=16%  Similarity=0.103  Sum_probs=167.4

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.++++ ++++|++++++|++|.+.    ++++|.++|++||+++|+||+| +++...
T Consensus        96 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~li~D~a~-~~~~~~  169 (353)
T 2yrr_A           96 HGLDPEVLDFPPGEPVDPEAVARALKRR-RYRMVALVHGETSTGVLN----PAEAIGALAKEAGALFFLDAVT-TLGMLP  169 (353)
T ss_dssp             TTCCEEEEECCTTSCCCHHHHHHHHHHS-CCSEEEEESEETTTTEEC----CHHHHHHHHHHHTCEEEEECTT-TTTTSC
T ss_pred             cCCceEEEeCCCCCCCCHHHHHHHHHhC-CCCEEEEEccCCCcceec----CHHHHHHHHHHcCCeEEEEcCc-cccccc
Confidence            4567777774     4899999999653 578889999999999886    5889999999999999999999 454321


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCC---C------------CCCCCCCCcHHHHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVP---G------------THGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~a~~~~  153 (266)
                        +....++  +|+++  ++|+++++ .++|++++++++.+.+..   .            ......+.+...+.++.++
T Consensus       170 --~~~~~~~--~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a  244 (353)
T 2yrr_A          170 --FSMRAMG--VDYAFTGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEA  244 (353)
T ss_dssp             --CCHHHHT--CSEEECCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHH
T ss_pred             --ccccccC--ceEEEecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHH
Confidence              2233333  45555  67988865 557999999998877651   0            1223345677777777788


Q ss_pred             HHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-
Q psy6547         154 LDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-  229 (266)
Q Consensus       154 l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-  229 (266)
                      ++.+..+   ++.++++++++++.+.|++ ++...... ....+.   ++++.++.  +.+..++.++|.++||.++++ 
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~  317 (353)
T 2yrr_A          245 LDLVLEEGVAARERRAREVYAWVLEELKA-RGFRPYPK-ASPLPT---VLVVRPPE--GVDADRLVRALYAEGVAVAGGI  317 (353)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCEESCS-SSBCTT---EEEEECCT--TCCHHHHHHHHHHTTEECEECC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-CCCccccC-ccCCCe---EEEEECCC--CCCHHHHHHHHHHCCEEEeCCc
Confidence            8876543   5678888999999999987 43222211 111355   67888764  456889999999999999875 


Q ss_pred             ---CCCEEEEeccCCCCHHHHH-HHHHHHHHHHHH
Q psy6547         230 ---SNNIIRLSPALNITEQELR-EGLDIIINTINT  260 (266)
Q Consensus       230 ---~~~~iR~~~~~~~t~~~i~-~~~~~l~~~~~~  260 (266)
                         ..+++|++++...++++++ +++++|+++++.
T Consensus       318 ~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          318 GPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             GGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence               3578999987778999999 999999988753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.90  E-value=1.7e-22  Score=176.51  Aligned_cols=232  Identities=12%  Similarity=0.070  Sum_probs=169.5

Q ss_pred             CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      ..+.+++.++.+     |+++|++.++++ ++++|++++++|++|.+.    ++++|.++|++||+++|+|++|+ ++. 
T Consensus       107 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~-~~~-  179 (416)
T 3isl_A          107 RYGANVHMLECEWGTVFDPEDIIREIKKV-KPKIVAMVHGETSTGRIH----PLKAIGEACRTEDALFIVDAVAT-IGG-  179 (416)
T ss_dssp             HTTCEEEEEECCTTCCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCHHHHHHHHHTTCEEEEECTTT-TTT-
T ss_pred             hcCCeeEEEecCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCceec----CHHHHHHHHHHcCCEEEEECCcc-ccC-
Confidence            346677888765     899999999532 578999999999999886    59999999999999999999995 211 


Q ss_pred             CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----------------------------------
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----------------------------------  134 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------------------  134 (266)
                       ..+....++.+..+.+++|++.++ .++|++++++++.+.+...                                   
T Consensus       180 -~~~~~~~~~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~  257 (416)
T 3isl_A          180 -CEVKVDEWKIDAAIGGTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDY  257 (416)
T ss_dssp             -SCCCTTTTTCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHH
T ss_pred             -CCcchhhcCCCEEEecCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhh
Confidence             112233333333333477998877 7889999999887665421                                   


Q ss_pred             ---CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc
Q psy6547         135 ---THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA  208 (266)
Q Consensus       135 ---~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  208 (266)
                         ......+.+...+.++.++++.+..   +++.++++++++++.+.|++ ++...........+.   ++++.+++  
T Consensus       258 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--  331 (416)
T 3isl_A          258 WSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA-MGLRLFGDDSCKMPV---VTCVEIPG--  331 (416)
T ss_dssp             TSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBCSCGGGBCTT---EEEEECCT--
T ss_pred             hcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCEeccCccccCCc---EEEEeCCC--
Confidence               1112335577777777788877655   36788889999999999998 543322211112356   88888875  


Q ss_pred             cchHHHHHHHHHHC-CceeccC----CCCEEEEeccCCCCHHH-HHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQE-LREGLDIIINTINTM  261 (266)
Q Consensus       209 ~~~~~~~~~~l~~~-gi~~~~~----~~~~iR~~~~~~~t~~~-i~~~~~~l~~~~~~~  261 (266)
                      +.+..+++++|.++ ||.++++    ..+++|++++..+++++ +++++++|+++++++
T Consensus       332 ~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          332 GIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             TCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence            55788999999887 9999864    46899999866566666 999999999998875

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.89  E-value=1.2e-23  Score=180.79  Aligned_cols=226  Identities=15%  Similarity=0.100  Sum_probs=164.0

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.++-..+++++ +..++++++++.++|++|.+.    +++++.++|+++|+++|+||+|++|...+...
T Consensus       124 ~~~g~~~~~v~~~~~~~~~~l~-~~~~~~~v~i~~p~nptG~~~----~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~  198 (360)
T 3hdo_A          124 EVQGARVRTFGLTGDFRIAGFP-ERYEGKVFFLTTPNAPLGPSF----PLEYIDELARRCAGMLVLDETYAEFAESNALE  198 (360)
T ss_dssp             HHHTCEEEEECBCTTSSBTTCC-SSBCSSEEEEESSCTTTCCCC----CHHHHHHHHHHBSSEEEEECTTGGGSSCCCTH
T ss_pred             HHCCCEEEEeeCCCCCCHHHHH-hhcCCCEEEEeCCCCCCCCCc----CHHHHHHHHHHCCCEEEEECChHhhCCcchhH
Confidence            3456677788765422233333 212356788777888899886    67788899999999999999998774332222


Q ss_pred             ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~  171 (266)
                      .....+..+.+.++||.++ +| +|+||+++++++.+.+...  ..+++.++++++++.++|+..+. ++..++++++++
T Consensus       199 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  275 (360)
T 3hdo_A          199 LVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAALDKI--RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETRE  275 (360)
T ss_dssp             HHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            2233445566677999998 88 9999999999988877642  24577899999999988875221 456777788888


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCCCCHHHH
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQEL  247 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~~t~~~i  247 (266)
                      ++.+.|++ ++   +.. .++.|.   ++++.++.   .+..++.+.|.++||.++++.    .+++|++++   +++++
T Consensus       276 ~l~~~L~~-~~---~~~-~~~~~~---~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~  341 (360)
T 3hdo_A          276 WFTTELRS-IG---YDV-IPSQGN---YLFATPPD---RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEM  341 (360)
T ss_dssp             HHHHHHHH-TT---CEE-CCCSSS---EEEEECTT---CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHH
T ss_pred             HHHHHHHH-CC---CEE-cCCCcc---EEEEECCC---CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHH
Confidence            88888887 42   332 344567   88887653   467899999999999998864    489999944   99999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6547         248 REGLDIIINTINTM  261 (266)
Q Consensus       248 ~~~~~~l~~~~~~~  261 (266)
                      +++++.|+++.+.+
T Consensus       342 ~~l~~al~~~~~~~  355 (360)
T 3hdo_A          342 EQTLAALKEIGEGH  355 (360)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999887654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.89  E-value=1.2e-22  Score=176.08  Aligned_cols=223  Identities=11%  Similarity=0.052  Sum_probs=164.2

Q ss_pred             CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547          25 YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        25 ~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      ..|++++++++++. ++++|+++.+.+++|.+ .+.+++++|+++|++||+++|+|++++  +  +..+....+++++.+
T Consensus       121 ~~d~~~l~~~i~~~-~~~~v~~~~~~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~  194 (379)
T 3ke3_A          121 PVDIETAVAKIKED-KSAIVYAPHVETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLI  194 (379)
T ss_dssp             CCCHHHHHHHHHHH-TCSEEEEESEETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEE
T ss_pred             CCCHHHHHHHHhhc-CCcEEEEEeecCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEE
Confidence            36899999999542 57888888888888876 788889999999999999999999986  3  334455556666666


Q ss_pred             eeecccccCCchhhhhheecHHhhhccCCCC---C-------------------CCCCCCcHHHHHHHHHHHHHHhhc--
Q psy6547         105 VILGKALSGGLYPISAVLADDEVMGTLVPGT---H-------------------GSTYGGNPLACKLAMTALDVILEE--  160 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~a~~~~l~~~~~~--  160 (266)
                      .+++|+++++ .++|++++++++.+.+....   .                   ..+++.++..++++.++++.+..+  
T Consensus       195 ~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~  273 (379)
T 3ke3_A          195 SAPQKGWSST-PCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGF  273 (379)
T ss_dssp             ECTTTTTCSC-CCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             ecchhhcCCC-CceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcH
Confidence            6678999876 67899999998876664311   0                   112377778888888999887664  


Q ss_pred             -cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC---------
Q psy6547         161 -NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---------  230 (266)
Q Consensus       161 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------  230 (266)
                       ++.++.+++++++++.|++ ++...+.......+.   +..+..+.   . ...+.+.|.++||.+.++.         
T Consensus       274 ~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~---i~~~~~~~---~-~~~~~~~L~~~Gi~v~~g~~~~~~~~~~  345 (379)
T 3ke3_A          274 DILRDAQWELGNRVRKVLTD-KGIESVAAEGFEAPG---VVVSYTER---D-DMHKGSAFAEAGLQIAAGVPLKVGEPDN  345 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCCBSBCTTCBCSS---EEEEECSC---H-HHHSSHHHHHTTCCCEECCCCSSCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCEecCCccccCce---EEEEccCC---c-chHHHHHHHHCCeEEeCCccccccccCc
Confidence             6788888999999999988 553322210111222   33333322   1 2223778889999988763         


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .+.+|++++..+|++|+++++++|+++++++.
T Consensus       346 ~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          346 FKTFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             CCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999998765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.89  E-value=2.4e-23  Score=182.04  Aligned_cols=230  Identities=12%  Similarity=0.082  Sum_probs=162.1

Q ss_pred             CCCCCC-ceeecC---C----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          14 GPHMPG-YNIIPY---N----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        14 ~~~~~~-v~~~~~---~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      ...+.+ ++.++.   +    |+++|++.+++. +++++++++.++|++|.+ ++.+++++|+++|++||+++|+||+|.
T Consensus       148 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~  226 (412)
T 1ajs_A          148 TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQ  226 (412)
T ss_dssp             HHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred             HHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccc
Confidence            345667 777776   3    799999999653 367788778888888876 899999999999999999999999999


Q ss_pred             CcCCcC---cccccccC----CCCcCeeeecccccC-Cchhhhhhee---cHH----hhhccCCCCCCCCCC-CcHHHHH
Q psy6547          85 GLGRTG---KLLAIHYE----DVRPDIVILGKALSG-GLYPISAVLA---DDE----VMGTLVPGTHGSTYG-GNPLACK  148 (266)
Q Consensus        85 ~~~~~g---~~~~~~~~----~~~~d~~~~sK~~~~-g~~~~g~~~~---~~~----~~~~~~~~~~~~~~~-~~~~~~~  148 (266)
                      +++..|   ..+.+...    +....+.++||.+++ | +|+||+++   +++    +.+.+... +..++. ++++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  304 (412)
T 1ajs_A          227 GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGAR  304 (412)
T ss_dssp             TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHH
T ss_pred             cccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHH
Confidence            887654   32222211    112335669999996 9 99999998   776    33333321 223333 5888888


Q ss_pred             HHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHH
Q psy6547         149 LAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM  219 (266)
Q Consensus       149 a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l  219 (266)
                      ++.++|+...        .+++.++++++++++.+.|++ ++. ..+....+..|.   +.|+.+      +...+...|
T Consensus       305 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~l  374 (412)
T 1ajs_A          305 IVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKTPGTWNHITDQIGM---FSFTGL------NPKQVEYLI  374 (412)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCHHHHHCCSS---EEECCC------CHHHHHHHH
T ss_pred             HHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEcCCCce---EEEeCC------CHHHHHHHH
Confidence            8888887542        245778888899999999887 541 123221223455   555433      234455556


Q ss_pred             HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         220 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       220 ~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++||.+.++    +|++++. .+++++++++++|+++++++
T Consensus       375 ~~~gv~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          375 NQKHIYLLPS----GRINMCG-LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             HTTCEECCTT----SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             HhCCEEecCC----cEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence            6889999985    5999773 48999999999999998753

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.82  E-value=6.2e-25  Score=191.08  Aligned_cols=242  Identities=13%  Similarity=0.084  Sum_probs=169.5

Q ss_pred             CcCcccccCCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ++.....+...+.+++.++.        .|+++|++.+++ ++++++++++++|++|.+ ++.+.+++|+++|++||+++
T Consensus       123 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~l  200 (392)
T 3b1d_A          123 YPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVIL  200 (392)
Confidence            33444444555667777776        367888888842 357888887788888876 88899999999999999999


Q ss_pred             EEeccccCcCCcCcc----ccccc--CCCCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCCC-CCcHHHHH
Q psy6547          78 IADEVQTGLGRTGKL----LAIHY--EDVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTY-GGNPLACK  148 (266)
Q Consensus        78 i~De~~~~~~~~g~~----~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~  148 (266)
                      |+||+|+++.+.|..    +.+..  .+..+.+.++||+++ +| +|+||+++++ ++.+.+.......++ +.++++++
T Consensus       201 i~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (392)
T 3b1d_A          201 VSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYI  279 (392)
Confidence            999999887654421    12222  345677788999998 89 9999999865 487777765444433 46888888


Q ss_pred             HHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEe-cCccceeeEEEEeeCccchHHHHHHHHH-HCCc
Q psy6547         149 LAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSS-GGLKKSINTLILSVSAILEVYDVCIKMK-DAGL  224 (266)
Q Consensus       149 a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi  224 (266)
                      ++.++|+..+.  +++.++++++++.+.+.|++.+  +.+.. ..+ .+.   ++|+.++.. +.+..+++++|+ ++||
T Consensus       280 a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~-~~~~~~~---~~~i~~~~~-~~~~~~l~~~l~~~~gi  352 (392)
T 3b1d_A          280 ATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEA--PRLKV-MKPQGTY---LIWLDFSDY-GLTDDALFTLLHDQAKV  352 (392)
Confidence            88888864211  3345556666666666665411  12332 233 344   456777641 235678999996 7899


Q ss_pred             eeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       225 ~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .+.++      +.+++|+++.  .+++++++++++|.++++
T Consensus       353 ~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          353 ILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIVCCLP  391 (392)
Confidence            99875      3478999944  578999999999998775

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.89  E-value=1.7e-21  Score=169.57  Aligned_cols=224  Identities=15%  Similarity=0.155  Sum_probs=162.8

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.+     |+++|++.+  .+++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.. ..  
T Consensus       138 g~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~~~~~g-~~--  208 (406)
T 1kmj_A          138 GAELRVIPLNPDGTLQLETLPTLF--DEKTRLLAITHVSNVLGTEN----PLAEMITLAHQHGAKVLVDGAQAVM-HH--  208 (406)
T ss_dssp             TCEEEEECBCTTSCBCGGGHHHHC--CTTEEEEEEESBCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTTTT-TS--
T ss_pred             CCEEEEEecCCCCCcCHHHHHHHh--ccCCeEEEEeCCCccccCcC----CHHHHHHHHHHcCCEEEEEchhhcC-CC--
Confidence            5567777753     789999999  44789999999999999885    4999999999999999999999632 21  


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCC---------------------CCCCcHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS---------------------TYGGNPLACKLA  150 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~a~  150 (266)
                      .+.....+.+..+.++||.+++  ..+|++++++++.+.+.......                     ..+.+++.+.++
T Consensus       209 ~~~~~~~~~d~~~~s~~K~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  286 (406)
T 1kmj_A          209 PVDVQALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIG  286 (406)
T ss_dssp             CCCHHHHTCSEEEEEGGGTTSC--TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHH
T ss_pred             CCcccccCCCEEEEEchhccCC--CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHH
Confidence            1222223333333459999963  23799999999888876543211                     122344555544


Q ss_pred             H-HHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEe--cCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         151 M-TALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSS--GGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       151 ~-~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      . ++++.+..   +++.++++++++++.+.|++ +.  .+.. ...  .|.   ++.+.++.   .+..++.+.|.++||
T Consensus       287 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~-~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi  356 (406)
T 1kmj_A          287 LGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VP--DLTL-YGPQNRLG---VIAFNLGK---HHAYDVGSFLDNYGI  356 (406)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-ST--TEEE-ESCTTCCS---EEEEEETT---CCHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CC--CeEE-ecCCCcCC---EEEEEECC---CCHHHHHHHHhhCCc
Confidence            4 77777654   35778888899999999988 42  1221 112  455   78887642   457789999999999


Q ss_pred             eeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++++.            .+++|++++..+|+++++++++.|+++++.+
T Consensus       357 ~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          357 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             ECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            998653            4899999999899999999999999988753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=6.9e-22  Score=172.89  Aligned_cols=224  Identities=14%  Similarity=0.158  Sum_probs=166.8

Q ss_pred             CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      +.+++.++.  +++|++.+  .+++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++..  .+...
T Consensus       146 g~~~~~v~~--~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~  214 (416)
T 1qz9_A          146 GYTLRLVDS--PEELPQAI--DQDTAVVMLTHVNYKTGYMH----DMQALTALSHECGALAIWDLAHS-AGAV--PVDLH  214 (416)
T ss_dssp             SCEEEEESS--GGGHHHHC--STTEEEEEEESBCTTTCBBC----CHHHHHHHHHHHTCEEEEECTTT-TTTS--CCCHH
T ss_pred             CceEEEeCc--HHHHHHHh--CCCceEEEEeccccCccccc----CHHHHHHHHHHcCCEEEEEcccc-ccCc--CCChh
Confidence            567788877  88999988  34789999999999999886    58999999999999999999995 3322  12222


Q ss_pred             cCCCCcCeee--ecccccCCchhh-hhheecHHhhhccCCCCC-----------------------CCCCCCcHHHHHHH
Q psy6547          97 YEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLA  150 (266)
Q Consensus        97 ~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~a~  150 (266)
                      .+  .+|+++  ++|++++| .++ |++++++++.+.+.....                       ....+.++..++++
T Consensus       215 ~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  291 (416)
T 1qz9_A          215 QA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV  291 (416)
T ss_dssp             HH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred             hc--CCCEEEecCcccCCCC-CCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHH
Confidence            23  356665  56999888 788 999999888766654211                       12235677778888


Q ss_pred             HHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccc---cCCCccc-EEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         151 MTALDVILE---ENMIENAYKMGEIFRSELSSPAN---KSKASFK-LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       151 ~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .++++.+..   +++.++++++++++.+.|++.++   ....... ....+.   ++++.+++     ..+++++|.++|
T Consensus       292 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~-----~~~l~~~l~~~g  363 (416)
T 1qz9_A          292 ECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS---HVSFEHPE-----GYAVIQALIDRG  363 (416)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS---EEEEECTT-----HHHHHHHHHTTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCC---EEEEecCC-----HHHHHHHHHhCC
Confidence            888988764   35788889999999999987212   1111110 001245   78887753     578999999999


Q ss_pred             ceeccCCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         224 LVTKPISNNIIRLSPA-LNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       224 i~~~~~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      |.+.....+++|++++ +.++++++++++++|++++++..
T Consensus       364 i~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~  403 (416)
T 1qz9_A          364 VIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT  403 (416)
T ss_dssp             EECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence            9987766889999987 58899999999999999987643

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.89  E-value=7.2e-22  Score=170.45  Aligned_cols=225  Identities=14%  Similarity=0.127  Sum_probs=162.4

Q ss_pred             CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.     .|+++|++.+  .++++++++++++|++|.+.    ++++|+++|++||+++|+|++|+....   
T Consensus       118 g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~~~~~~~~---  188 (376)
T 3f0h_A          118 EIPYVALKLEHGKKLTKEKLYEYD--NQNFTGLLVNVDETSTAVLY----DTMMIGEFCKKNNMFFVCDCVSAFLAD---  188 (376)
T ss_dssp             TCCEEEEECCTTCCCCHHHHHTTT--TSCCCEEEEESEETTTTEEC----CHHHHHHHHHHTTCEEEEECTTTTTTS---
T ss_pred             CCceEEEeCCCCCCCCHHHHHHhh--ccCceEEEEecccCCcceec----CHHHHHHHHHHcCCEEEEEcCccccCc---
Confidence            455666653     3789999877  45789999999999999885    499999999999999999999964422   


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC-----------------CCCCCCcHHHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~a~~~~l  154 (266)
                      .+....++++..+.+++|+++++ .++|++++++++.+.+.....                 ...++.+...++++.+++
T Consensus       189 ~~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  267 (376)
T 3f0h_A          189 PFNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL  267 (376)
T ss_dssp             CCCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHH
T ss_pred             cccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHH
Confidence            23344455566666688999966 668889999988776653211                 124455555556777777


Q ss_pred             HHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC
Q psy6547         155 DVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI  229 (266)
Q Consensus       155 ~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~  229 (266)
                      +.+..+    .+.++++++++++.+.|++ ++......  ...+.   ++.+. +.  +.+..++++.|.++ ||.++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~--~~~~~---~~~~~-~~--~~~~~~l~~~l~~~~gi~v~~g  338 (376)
T 3f0h_A          268 KEIKKHGGADAEVARIASQAADFRAKIKD-LPFELVSE--SPANG---VTSVH-PT--TANAYDIFLKLKDEYGIWICPN  338 (376)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHTTT-SSEEECCS--SBBTT---EEEEE-ES--SSCHHHHHHHHHHHSSEECEEC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHH-cCCccCcc--ccCce---EEEEe-CC--CCCHHHHHHHHHHhCCEEEecC
Confidence            776554    4667777788888888877 44211111  11233   33333 33  45788999999988 9999875


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          ..+++|++++..+|++++++++++|++++++
T Consensus       339 ~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          339 GGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             CGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence                3579999999899999999999999998864

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.89  E-value=2.9e-22  Score=174.03  Aligned_cols=224  Identities=14%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+++. ++++|++++++|++|.+.    ++++|.++|+++|+++|+||+|+ ++.. 
T Consensus       131 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~-  203 (393)
T 1vjo_A          131 YGADVRTISKPWGEVFSLEELRTALETH-RPAILALVHAETSTGARQ----PLEGVGELCREFGTLLLVDTVTS-LGGV-  203 (393)
T ss_dssp             TTCEEEEEECCTTCCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHHHTCEEEEECTTT-TTTS-
T ss_pred             cCCceEEEecCCCCCCCHHHHHHHHhhC-CceEEEEeccCCCcceec----cHHHHHHHHHHcCCEEEEECCcc-ccCc-
Confidence            4556777773     5899999999542 578899999999999885    58999999999999999999996 5432 


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCC-------CC------------CCCCC-CCcHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVP-------GT------------HGSTY-GGNPLACK  148 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~~------------~~~~~-~~~~~~~~  148 (266)
                       .+...  ...+|+++  +||+++++ .++|++++++++.+.+..       ..            ....+ +.+++++.
T Consensus       204 -~~~~~--~~~~di~~~s~sK~l~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  279 (393)
T 1vjo_A          204 -PIFLD--AWGVDLAYSCSQKGLGCS-PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYY  279 (393)
T ss_dssp             -CCCTT--TTTCSEEECCSSSTTCSC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHH
T ss_pred             -CCccc--ccCccEEEEcCcccccCC-CceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHH
Confidence             22222  34566666  55999987 589999999988876632       11            02233 67888899


Q ss_pred             HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEe--cCccceeeEEEEeeCccchHHHHHHHHHHC-
Q psy6547         149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSS--GGLKKSINTLILSVSAILEVYDVCIKMKDA-  222 (266)
Q Consensus       149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  222 (266)
                      ++..+++.+..   +++.++++++++++.+.|++ ++.....  ..+  .+.   ++++.++.  +.+..+++++|.++ 
T Consensus       280 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~--~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~~  351 (393)
T 1vjo_A          280 ALREALRLIAQEGLANCWQRHQKNVEYLWERLED-IGLSLHV--EKEYRLPT---LTTVCIPD--GVDGKAVARRLLNEH  351 (393)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBSS--CGGGBCSS---EEEEECCT--TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-cCCcccC--CccccCCc---EEEEEcCC--CCCHHHHHHHHHhhC
Confidence            99999988654   35788899999999999988 5432222  111  234   78888764  45688999999988 


Q ss_pred             CceeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTI  258 (266)
Q Consensus       223 gi~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ||.+.++    ..+++|+++ ++..+++++++++++|++++
T Consensus       352 gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          352 NIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             CEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             CEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            9999875    358999995 55678889999999999875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.88  E-value=4.7e-22  Score=179.57  Aligned_cols=240  Identities=13%  Similarity=0.046  Sum_probs=165.4

Q ss_pred             cccCCCCCCceeecCC---------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHH-hcCCEEEEe
Q psy6547          11 NEFGPHMPGYNIIPYN---------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QYNVLFIAD   80 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~---------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~-~~g~~li~D   80 (266)
                      ..+...+.+++.++.+         |+++|++++  .+++++|+++.++|++|.+ ++.+.+++|+++|+ +||+++|+|
T Consensus       208 ~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l--~~~~k~v~l~~p~NPtG~~-~~~~~l~~l~~la~~~~~~~li~D  284 (533)
T 3f6t_A          208 RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLK--DPSIKALIVVNPTNPTSKE-FDTNALNAIKQAVEKNPKLMIISD  284 (533)
T ss_dssp             TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHS--CTTEEEEEEESSCTTTCBC-CCHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHh--CCCCeEEEEeCCCCCCccc-cCHHHHHHHHHHHHhCCCCEEEEc
Confidence            3344456677777753         799999998  4578999988778888876 89999999999999 689999999


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHH-----hhhcc-----------------------
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDE-----VMGTL-----------------------  131 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~-----~~~~~-----------------------  131 (266)
                      |+|.++...+........+....+.++||.++ +| +|+||++++++     +++.+                       
T Consensus       285 e~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~  363 (533)
T 3f6t_A          285 EVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMK  363 (533)
T ss_dssp             CTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCC
T ss_pred             CCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhh
Confidence            99987754332222112234566777999998 88 99999999776     44433                       


Q ss_pred             ---------CCCCCCCCCCCcHHHHHH----HHHHHH------HHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccE
Q psy6547         132 ---------VPGTHGSTYGGNPLACKL----AMTALD------VIL--EENMIENAYKMGEIFRSELSSPANKSKASFKL  190 (266)
Q Consensus       132 ---------~~~~~~~~~~~~~~~~~a----~~~~l~------~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  190 (266)
                               .......+.+.+++.+.+    +..+|.      ...  .+.++++++++++.+.+.|.  ++   +....
T Consensus       364 ~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~--~~---~~~~~  438 (533)
T 3f6t_A          364 FIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ--AP---KDETD  438 (533)
T ss_dssp             HHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT--CC---CCCST
T ss_pred             hHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC--CC---ccccC
Confidence                     333455566677777666    333442      000  12356667777777777775  32   22212


Q ss_pred             EecCccceeeEEEEeeCc----c----------chHHHHHHHHH-HCCceeccCC-----CCEEEEeccCCCCHHHHHHH
Q psy6547         191 SSGGLKKSINTLILSVSA----I----------LEVYDVCIKMK-DAGLVTKPIS-----NNIIRLSPALNITEQELREG  250 (266)
Q Consensus       191 ~~~g~~~~~~~~~~~~~~----~----------~~~~~~~~~l~-~~gi~~~~~~-----~~~iR~~~~~~~t~~~i~~~  250 (266)
                      ...|.   ++|+.+..-.    +          .+..+++.+++ ++||.+.|+.     .+++|+++. ..++++++++
T Consensus       439 ~~~g~---~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~  514 (533)
T 3f6t_A          439 TNTHY---YSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALI  514 (533)
T ss_dssp             TBCCS---EEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHH
T ss_pred             CCceE---EEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHH
Confidence            34566   7777765300    0          24556766665 7899999862     589999964 3689999999


Q ss_pred             HHHHHHHHHHHhh
Q psy6547         251 LDIIINTINTMAA  263 (266)
Q Consensus       251 ~~~l~~~~~~~~~  263 (266)
                      +++|.+++++...
T Consensus       515 i~~L~~~l~~~~~  527 (533)
T 3f6t_A          515 GKQVLELLKEYYE  527 (533)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988643

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.88  E-value=2e-21  Score=169.36  Aligned_cols=220  Identities=12%  Similarity=0.045  Sum_probs=160.5

Q ss_pred             CCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          17 MPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        17 ~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      +.+++.++.+      |+++|++.+  .+++++|++++++|++|.+.    ++++|.++|+++|+++|+||+|+ ++.. 
T Consensus       138 g~~v~~v~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~-~g~~-  209 (406)
T 3cai_A          138 GAKVKWAEVDIETGELPTWQWESLI--SKSTRLVAVNSASGTLGGVT----DLRAMTKLVHDVGALVVVDHSAA-APYR-  209 (406)
T ss_dssp             BCEEEEECCCTTTCCCCGGGHHHHC--CTTEEEEEEESBCTTTCBBC----CCHHHHHHHHHTTCEEEEECTTT-TTTC-
T ss_pred             CCeEEEEecCcccCCcCHHHHHHHh--CCCceEEEEeCCcCCccccC----CHHHHHHHHHHcCCEEEEEcccc-cCCC-
Confidence            5678888876      899999999  45789999999999999886    58999999999999999999995 2211 


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhh-hheecHHhhhccCCCCC---------CCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPIS-AVLADDEVMGTLVPGTH---------GSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                       .+....++.+..+.+++|.++++   +| ++++++++.+.+.....         ....+.++..++++.++++.+.. 
T Consensus       210 -~~~~~~~~~d~~~~s~~K~~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~  285 (406)
T 3cai_A          210 -LLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAAL  285 (406)
T ss_dssp             -CCCHHHHCCSEEEEEGGGGTSCS---CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTS
T ss_pred             -CCCchhcCCCEEEeehhhhcCCC---cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHh
Confidence             12223334333344478987643   88 99999988877765432         12345677777777778877654 


Q ss_pred             ----------------ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         160 ----------------ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       160 ----------------~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                                      +++.++++++++++.+.|++ +.. ..... ....+.   ++++.++.   .+..++++.|.++
T Consensus       286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~~~~~~---~~~~~~~~---~~~~~~~~~L~~~  357 (406)
T 3cai_A          286 DESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGR-PEAQIP---VVSFAVHK---VPADRVVQRLADN  357 (406)
T ss_dssp             STTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCC-CSSBCS---EEEEEETT---BCHHHHHHHHHHT
T ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCC-ccccCC---EEEEEECC---cCHHHHHHHHHHC
Confidence                            34667778888888888887 432 11111 111233   77777753   3578899999999


Q ss_pred             CceeccCC-------------CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         223 GLVTKPIS-------------NNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       223 gi~~~~~~-------------~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      ||.++++.             .+++|++++..++++++++++++|++
T Consensus       358 gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          358 GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            99998753             37899999988999999999999875

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.88  E-value=5.4e-21  Score=167.13  Aligned_cols=225  Identities=16%  Similarity=0.167  Sum_probs=163.7

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+  .+++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.. .. 
T Consensus       142 ~g~~~~~v~~~~~~~~d~~~l~~~l--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~a~~~~-~~-  213 (420)
T 1t3i_A          142 TGAVLKFVQLDEQESFDLEHFKTLL--SEKTKLVTVVHISNTLGCVN----PAEEIAQLAHQAGAKVLVDACQSAP-HY-  213 (420)
T ss_dssp             HCCEEEEECBCTTSSBCHHHHHHHC--CTTEEEEEEESBCTTTCBBC----CHHHHHHHHHHTTCEEEEECTTTTT-TS-
T ss_pred             cCcEEEEeccCCCCCcCHHHHHHhh--CCCceEEEEeCCcccccCcC----CHHHHHHHHHHcCCEEEEEhhhccC-Cc-
Confidence            3556777775     4799999999  44789999999999999886    5999999999999999999999632 21 


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCC--------------------CCCCcHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGS--------------------TYGGNPLACK  148 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~  148 (266)
                       .+....++  +|+++  +||.+++  ..+|++++++++.+.+.......                    ..+.+++.+.
T Consensus       214 -~~~~~~~~--~di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (420)
T 1t3i_A          214 -PLDVQLID--CDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEA  288 (420)
T ss_dssp             -CCCHHHHT--CSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHH
T ss_pred             -cCchhhcC--CCEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHH
Confidence             11222233  55555  6696653  34899999999888876543221                    1234555555


Q ss_pred             HHHH-HHHHHhh---ccHHHHHHHHHHHHHHHhhcccc-cCCCcccEE---ecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547         149 LAMT-ALDVILE---ENMIENAYKMGEIFRSELSSPAN-KSKASFKLS---SGGLKKSINTLILSVSAILEVYDVCIKMK  220 (266)
Q Consensus       149 a~~~-~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (266)
                      ++.. +++.+..   +++.++++++++++.+.|++ +. ...... ..   +.|.   ++++.++.   .+..++++.|.
T Consensus       289 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~  360 (420)
T 1t3i_A          289 IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGP-NPKHGDRAA---LASFNVAG---LHASDVATMVD  360 (420)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESC-CGGGSCBCS---EEEEEETT---BCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCC-CccccccCC---EEEEEECC---CCHHHHHHHHH
Confidence            5444 6777654   45788888999999999988 42 111111 10   1355   88887653   35778999999


Q ss_pred             HCCceeccC-----------C-CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVTKPI-----------S-NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~~~~-----------~-~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++||.++++           + .+++|++++..++++++++++++|+++++.+
T Consensus       361 ~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          361 QDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             TTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999986           2 6799999998889999999999999998775

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.88  E-value=1.5e-21  Score=169.35  Aligned_cols=230  Identities=13%  Similarity=0.088  Sum_probs=163.5

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.+++. ++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++.. 
T Consensus       116 ~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~~v~~~~~~nptG~~~----~l~~i~~~~~~~~~~li~D~a~~-~~~~-  188 (393)
T 2huf_A          116 YGADVRVVKSKVGQSLSLDEIRDALLIH-KPSVLFLTQGDSSTGVLQ----GLEGVGALCHQHNCLLIVDTVAS-LGGA-  188 (393)
T ss_dssp             TTCEEEEEECCTTCCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHHTTCEEEEECTTT-BTTB-
T ss_pred             cCCeeEEEeCCCCCCCCHHHHHHHHhcc-CCcEEEEEccCCCccccC----CHHHHHHHHHHcCCEEEEEcccc-cCCC-
Confidence            3556777773     5899999999542 478889888999999885    48999999999999999999984 4321 


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCC-----------------------CCCCCCCcHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT-----------------------HGSTYGGNPL  145 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  145 (266)
                       .+....+  .+|+++  +||+++|+ .++|++++++++.+.+....                       .....+.+..
T Consensus       189 -~~~~~~~--~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (393)
T 2huf_A          189 -PMFMDRW--EIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISST  264 (393)
T ss_dssp             -CCCTTTT--TCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHH
T ss_pred             -Ccchhhc--CccEEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHH
Confidence             2222223  355555  67998754 44599999988877654320                       0111245666


Q ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         146 ACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       146 ~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      +++++.++++.+..   ++..++++++++++.+.|++ ++...+.......+.   ++++.++.  +.+..+++++|.++
T Consensus       265 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~  338 (393)
T 2huf_A          265 LLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-AGFELYADPKDRLST---VTTIKVPQ--GVDWLKAAQYAMKT  338 (393)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-TTCCBSSCGGGBCTT---EEEEECCT--TCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCeeccCccccCCc---EEEEEcCC--CCCHHHHHHHHHHh
Confidence            66677778877643   35778888999999999988 543222210001245   77788764  45678899999865


Q ss_pred             -CceeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         223 -GLVTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       223 -gi~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       ||.++++    ..+++|+++ +...+++++++++++|+++++++.
T Consensus       339 ~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~  384 (393)
T 2huf_A          339 YLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK  384 (393)
T ss_dssp             HCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence             9999875    358999998 445689999999999999988764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.88  E-value=5.4e-21  Score=165.09  Aligned_cols=226  Identities=16%  Similarity=0.108  Sum_probs=163.2

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~~~~~   88 (266)
                      .+.+++.++.     .|+++|++.++  +++++|++++++|++|.+.    ++++|.++|++||  +++|+||+|+ ++.
T Consensus       112 ~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~~li~Dea~~-~~~  184 (384)
T 1eg5_A          112 KGFKVKYVPVDSRGVVKLEELEKLVD--EDTFLVSIMAANNEVGTIQ----PVEDVTRIVKKKNKETLVHVDAVQT-IGK  184 (384)
T ss_dssp             TTCEEEECCBCTTSCBCHHHHHHHCC--TTEEEEEEESBCTTTCBBC----CHHHHHHHHHHHCTTCEEEEECTTT-TTT
T ss_pred             cCCEEEEEccCCCCccCHHHHHHHhC--CCCeEEEEECCCCCccccc----CHHHHHHHHHhcCCceEEEEEhhhh-cCC
Confidence            4567777775     37999999993  4789999999999999886    5899999999999  9999999995 432


Q ss_pred             cCcccccccCCCCcCeee--ecccccC-CchhhhhheecHHh--hhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547          89 TGKLLAIHYEDVRPDIVI--LGKALSG-GLYPISAVLADDEV--MGTLVPG---THGSTYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~--~sK~~~~-g~~~~g~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      .  .+.+..+  .+|+++  +||.++. |   +|++++++++  .+.+...   ....+++.+++.+.++.++++.+.. 
T Consensus       185 ~--~~~~~~~--~~di~~~s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  257 (384)
T 1eg5_A          185 I--PFSLEKL--EVDYASFSAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEE  257 (384)
T ss_dssp             S--CCCCTTT--CCSEEEEEGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHT
T ss_pred             c--ccCchhc--CCCEEEecHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHh
Confidence            2  2222222  456666  5598773 4   6999998875  2233221   1234567888888888888887543 


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--------  230 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------  230 (266)
                       +++.++++++++++.+.|++ .+...........+.   ++++.++.   .+..++.+.|.++||.+.++.        
T Consensus       258 ~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~  330 (384)
T 1eg5_A          258 LSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPN---TLSVSFPN---IRGSTLQNLLSGYGIYVSTSSACTSKDER  330 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTT---EEEEECTT---CCHHHHHHHHHHTTEECBC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCC---EEEEEeCC---CCHHHHHHHHhhCCeEEeccccccCCCCc
Confidence             46788888899999999887 432111110001244   67777653   357889999999999998742        


Q ss_pred             ---------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 ---------------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 ---------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                                     .+++|++++..++++++++++++|+++++++.
T Consensus       331 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  377 (384)
T 1eg5_A          331 LRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD  377 (384)
T ss_dssp             --CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                           36899998888899999999999999988753

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.88  E-value=2.2e-22  Score=180.48  Aligned_cols=248  Identities=10%  Similarity=0.048  Sum_probs=168.4

Q ss_pred             CcCcccccCCCCCCceeec-------CCCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547           6 DPTSYNEFGPHMPGYNIIP-------YNDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN   74 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~-------~~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g   74 (266)
                      ++.....+...+.+++.++       ..|+++|++.+++.    .++++|+++.++|++|.+ ++.+.+++|+++|++||
T Consensus       192 y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~-~s~~~l~~i~~la~~~~  270 (500)
T 3tcm_A          192 YPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV-LAEENQYDIVKFCKNEG  270 (500)
T ss_dssp             CTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHT
T ss_pred             cHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc-CCHHHHHHHHHHHHHcC
Confidence            3334444555677888887       45899999999651    257888877778888877 89999999999999999


Q ss_pred             CEEEEeccccCcCCcC--ccccc----ccCCC---Cc---Ceeeecccc-c-CCchhhhhhee---cHHhhhccCCCCCC
Q psy6547          75 VLFIADEVQTGLGRTG--KLLAI----HYEDV---RP---DIVILGKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHG  137 (266)
Q Consensus        75 ~~li~De~~~~~~~~g--~~~~~----~~~~~---~~---d~~~~sK~~-~-~g~~~~g~~~~---~~~~~~~~~~~~~~  137 (266)
                      +++|+||+|.++...+  ...++    ...+.   ..   .+.++||++ + +| +|+||+++   ++++.+.+.... .
T Consensus       271 ~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~-~  348 (500)
T 3tcm_A          271 LVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIA-S  348 (500)
T ss_dssp             CEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHH-H
T ss_pred             CEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHH-h
Confidence            9999999997753322  11111    11111   11   223699999 5 68 99999987   788777665322 2


Q ss_pred             CCCCCcHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe
Q psy6547         138 STYGGNPLACKLAMTALD-----------VIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS  205 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~-----------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  205 (266)
                      ..++++++++.++..+++           +.+ .+.+.++++++++++.+.|++ +.  .+.......|+   +.|+.+.
T Consensus       349 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~--g~~~~~~~g~~---~~~~~~~  422 (500)
T 3tcm_A          349 VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LE--GITCNEAEGAM---YVFPQIC  422 (500)
T ss_dssp             TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-ST--TEECCCCCBTT---EECCEEC
T ss_pred             cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEEecCCeEE---EEeeeec
Confidence            345677888888777764           222 245677888889999999988 52  23221233455   6664443


Q ss_pred             eCcc---------c-hHHHHH-HHHHHCCceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         206 VSAI---------L-EVYDVC-IKMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       206 ~~~~---------~-~~~~~~-~~l~~~gi~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ....         . +...++ +.|.++||.+.|+       +.+++|+++.  .+++++++++++|.+++++...+
T Consensus       423 lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~  497 (500)
T 3tcm_A          423 LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSE  497 (500)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            2101         1 123334 4456789999874       2357999966  89999999999999999876543

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.87  E-value=1.4e-21  Score=167.05  Aligned_cols=226  Identities=12%  Similarity=0.018  Sum_probs=163.6

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~   88 (266)
                      .+.+++.++.+     |+++|++     +++++|++++++|++|.+.    ++++|.++|++|  |+++|+||+|+ ++.
T Consensus        97 ~g~~~~~v~~~~~~~~d~~~l~~-----~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~~~li~D~a~~-~~~  166 (352)
T 1iug_A           97 AGLVVERLDYPYGDTPRPEDVAK-----EGYAGLLLVHSETSTGALA----DLPALARAFKEKNPEGLVGADMVTS-LLV  166 (352)
T ss_dssp             TTCEEEEEECCTTCCCCTTTSCC-----SSCSEEEEESEETTTTEEC----CHHHHHHHHHHHCTTCEEEEECTTT-BTT
T ss_pred             cCCceEEEeCCCCCCCCHHHHhc-----cCCcEEEEEEecCCcceec----CHHHHHHHHHhhCCCCEEEEECCcc-ccC
Confidence            35566777653     5555544     4678899999999999886    589999999999  99999999995 432


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------------C-CCCCCCCCcHHHHHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------------G-THGSTYGGNPLACKLAMTAL  154 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~a~~~~l  154 (266)
                      .  .+....++.+..+.++||++.++ .++|++++++++.+.+..             . ......+.+...+.++.+++
T Consensus       167 ~--~~~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  243 (352)
T 1iug_A          167 G--EVALEAMGVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVL  243 (352)
T ss_dssp             B--CCCSGGGTCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHH
T ss_pred             c--ceeccccCeeEEEecCcccccCC-CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHH
Confidence            1  12222233333334477988765 568999998887654221             0 12234566777888888888


Q ss_pred             HHHhhc--cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---
Q psy6547         155 DVILEE--NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---  229 (266)
Q Consensus       155 ~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---  229 (266)
                      +.++..  ++.++++++++++.+.|++ ++...... . ..+.   ++++.+++  +.+..+++++|.++||.+.++   
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~-~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~  315 (352)
T 1iug_A          244 EEVLPRLEEHLALKAWQNALLYGVGEE-GGLRPVPK-R-FSPA---VAAFYLPE--GVPYARVKEAFAQRGAVIAGGQGP  315 (352)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHH-TTCEESCS-S-BCTT---CEEEECCT--TCCHHHHHHHHHTTTEECEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCccccc-c-cCCe---EEEEEcCC--CCCHHHHHHHHHHCCEEEEeCCCc
Confidence            876653  6778888899999999987 43221111 1 2466   89998875  456889999999999999876   


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       ..+++|++++..++++++++++++|+++++++.
T Consensus       316 ~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  349 (352)
T 1iug_A          316 LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL  349 (352)
T ss_dssp             GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence             358999999988899999999999999988763

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.87  E-value=1.6e-21  Score=173.34  Aligned_cols=221  Identities=14%  Similarity=0.148  Sum_probs=164.7

Q ss_pred             CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |+++|+++++++ +++++|++++++|++|.+.    ++++|.++|++||+++|+|++|+ .+.  ..+....++.+..+.
T Consensus       200 d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~----~l~~i~~la~~~g~~vi~D~a~~-~g~--~~~~~~~~~~D~~~~  272 (465)
T 3e9k_A          200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHF----NIPAITKAGQAKGCYVGFDLAHA-VGN--VELYLHDWGVDFACW  272 (465)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC----CHHHHHHHHHHTTCEEEEECTTT-TTT--SCCCHHHHTCCEEEE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEeCcccCcceee----cHHHHHHHHHHcCCEEEEEhhhh-cCC--cCCchhhcCCCEEEE
Confidence            799999999653 5799999999999999986    78999999999999999999995 221  122333445444455


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCCCCC---C----------------------CCCCcHHHHHHHHHHHHHHhh-
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPGTHG---S----------------------TYGGNPLACKLAMTALDVILE-  159 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~---~----------------------~~~~~~~~~~a~~~~l~~~~~-  159 (266)
                      +++|++++|..++|++.+++++.+.+.+...+   .                      ..+++.+.+++..++++.++. 
T Consensus       273 s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~  352 (465)
T 3e9k_A          273 CSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA  352 (465)
T ss_dssp             CSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc
Confidence            57899963315689999998887666532111   0                      115677788888888887765 


Q ss_pred             --ccHHHHHHHHHHHHHHHhhccccc-------CCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANK-------SKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                        +++.+++.++++++.+.|++.+..       ..+..    .....|.   +++|.++.    +..++++.|.++||.+
T Consensus       353 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~---~~~~~~~~----~~~~l~~~L~~~Gi~v  425 (465)
T 3e9k_A          353 TMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGC---QLTITFSV----PNKDVFQELEKRGVVC  425 (465)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCS---CEEEEECC----TTCCHHHHHHTTTEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhccc---EEEEEecC----CHHHHHHHHHHCCEEE
Confidence              568888999999999999873210       11111    0122366   89998864    4567999999999999


Q ss_pred             ccCCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         227 KPISNNIIRLSP-ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       227 ~~~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ....++++|+++ +..+++++++++++.|++++++.
T Consensus       426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            877789999998 89999999999999999998753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.87  E-value=3.9e-23  Score=179.66  Aligned_cols=228  Identities=14%  Similarity=0.086  Sum_probs=157.0

Q ss_pred             cCCCCCCceeecC---C----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          13 FGPHMPGYNIIPY---N----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        13 ~~~~~~~v~~~~~---~----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +...+.+++.++.   +    |+++|++.+++.+ ++++++++.++|++|.+ ++.+++++|+++|++||+++|+||+|+
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~  215 (396)
T 2q7w_A          137 FNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQ  215 (396)
T ss_dssp             HHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred             HHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccc
Confidence            3445677888887   4    7999999996532 46778888888888876 899999999999999999999999998


Q ss_pred             CcCCcC--cccccccC----CCCcCeeeeccccc-CCchhhhhhee---cH----HhhhccCCCCCCCCCCCcHHHHHHH
Q psy6547          85 GLGRTG--KLLAIHYE----DVRPDIVILGKALS-GGLYPISAVLA---DD----EVMGTLVPGTHGSTYGGNPLACKLA  150 (266)
Q Consensus        85 ~~~~~g--~~~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~a~  150 (266)
                      ++...+  ...+...+    .....+.++||.++ +| +|+||+++   ++    ++.+.+.........+++++++.++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  294 (396)
T 2q7w_A          216 GFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVV  294 (396)
T ss_dssp             TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             cccCCccchhHHHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHH
Confidence            875543  22222211    12233556999999 89 99999986   55    3444433211223334588888888


Q ss_pred             HHHHHHH------h--hccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547         151 MTALDVI------L--EENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD  221 (266)
Q Consensus       151 ~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  221 (266)
                      .++|+..      .  -+++.++++++++++.+.|++ ++.. .+....+..|.   ++|+.++      .+.+...|.+
T Consensus       295 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~l~~  364 (396)
T 2q7w_A          295 ATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSFIIKQNGM---FSFSGLT------KEQVLRLREE  364 (396)
T ss_dssp             HHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTHHHHCCSS---EEECCCC------HHHHHHHHHH
T ss_pred             HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCCCce---EEEecCC------HHHHHHHHHh
Confidence            8887543      1  134566777888888888887 4421 13321223455   5555432      3456666778


Q ss_pred             CCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         222 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       222 ~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      +||.+.++    +|++++.. +++++++++++|+++
T Consensus       365 ~gv~v~~~----~Ris~~~~-~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          365 FGVYAVAS----GRVNVAGM-TPDNMAPLCEAIVAV  395 (396)
T ss_dssp             HCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred             cCeeecCC----ceEEEeec-CHHHHHHHHHHHHhc
Confidence            99999884    69998743 999999999999875

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.87  E-value=1.2e-21  Score=176.41  Aligned_cols=240  Identities=13%  Similarity=0.043  Sum_probs=165.4

Q ss_pred             cCcccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +...+.+..++.+++.++.+     |+++|++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||
T Consensus       203 ~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~i~livDe  276 (514)
T 3mad_A          203 AAFDKAAQYFGIKLVRTPLDADYRADVAAMREAI--TPNTVVVAGSAPGYPHGVVD----PIPEIAALAAEHGIGCHVDA  276 (514)
T ss_dssp             THHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHC--CTTEEEEEEETTCTTTCCCC----CHHHHHHHHHHHTCEEEEEC
T ss_pred             hHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHh--ccCCEEEEEeCCCCCCcccc----CHHHHHHHHHHhCCeEEEec
Confidence            33334445567788899876     899999999  44789999999999999885    69999999999999999999


Q ss_pred             cccCcC-----CcCc---ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC----CC-------CCCCCC
Q psy6547          82 VQTGLG-----RTGK---LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----TH-------GSTYGG  142 (266)
Q Consensus        82 ~~~~~~-----~~g~---~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~-------~~~~~~  142 (266)
                      +|+++.     ..|.   .+.....+++....+++|++.+| .++|+++++.+........    ..       ....+.
T Consensus       277 a~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  355 (514)
T 3mad_A          277 CLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSR  355 (514)
T ss_dssp             TTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSC
T ss_pred             ccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCC
Confidence            998752     2232   23334445544455577998888 8899998877655432210    00       001122


Q ss_pred             cHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH
Q psy6547         143 NPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM  219 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l  219 (266)
                      +.....+..++++.++.   +++.+++.++++++.+.|++ +..  +.. ......   ++++...   +.+..++.++|
T Consensus       356 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g--~~~-~~~~~~---~~~~~~~---~~~~~~l~~~L  425 (514)
T 3mad_A          356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPS--LKI-LGDPLW---VIAVASD---ELNIYQVMEEM  425 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STT--CEE-SSCCSS---EEEEECS---SSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCC--eEE-eCCCeE---EEEEeCC---CCCHHHHHHHH
Confidence            23333444445554443   45788888899999999988 432  111 111133   6777653   34678999999


Q ss_pred             HHCCceeccC-CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         220 KDAGLVTKPI-SNNIIRLSPA-LNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       220 ~~~gi~~~~~-~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      .++||.+... .++.+|+++. ...+++++++++++|+++++++..
T Consensus       426 ~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          426 AGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA  471 (514)
T ss_dssp             HTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999988432 3578999987 455679999999999999987653

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.87  E-value=9.1e-21  Score=166.09  Aligned_cols=224  Identities=14%  Similarity=0.141  Sum_probs=163.5

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++.+     |+++|++.+  .+++++|++++++|++|.+.    ++++|+++|++||++||+||+|+. +..  
T Consensus       137 g~~~~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~Dea~~~-~~~--  207 (423)
T 3lvm_A          137 GFEVTYLAPQRNGIIDLKELEAAM--RDDTILVSIMHVNNEIGVVQ----DIAAIGEMCRARGIIYHVDATQSV-GKL--  207 (423)
T ss_dssp             TCEEEEECCCTTSCCCHHHHHHHC--CTTEEEEECCSBCTTTCBBC----CHHHHHHHHHHHTCEEEEECTTTT-TTS--
T ss_pred             CCEEEEeccCCCCccCHHHHHHhc--CCCcEEEEEeCCCCCCcccc----CHHHHHHHHHHcCCEEEEEhhhhc-CCC--
Confidence            6677888765     899999999  44789999999999999886    599999999999999999999953 111  


Q ss_pred             ccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547          92 LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--E  160 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~  160 (266)
                      .+...  ...+|+++  +||.+++  .++|+++++++..+.+.....       ....+.+...+.++.++++.+..  +
T Consensus       208 ~~~~~--~~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  283 (423)
T 3lvm_A          208 PIDLS--QLKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMA  283 (423)
T ss_dssp             CCCTT--TSCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcChh--hcCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            12222  33466666  5597653  458999998877776665432       33445677777777788877655  5


Q ss_pred             cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC---------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---------  230 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------  230 (266)
                      ++.++++++++++++.|++ +.. ..........+.   ++.+.+.   +.+..++.+.|.+  |.+.++.         
T Consensus       284 ~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~  354 (423)
T 3lvm_A          284 TEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPN---ILNVSFN---YVEGESLIMALKD--LAVSSGSACTSASLEP  354 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTT---EEEEEET---TSCHHHHHHHTTT--EECBCCCC-----CCC
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCC---eEEEEeC---CCCHHHHHHHHhh--heeccCccccCCCccc
Confidence            6888888999999999987 421 111110111234   6666663   3467888888877  7776642         


Q ss_pred             --------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 --------------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 --------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                                    .+++|++++..++++++++++++|+++++++.
T Consensus       355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~  400 (423)
T 3lvm_A          355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR  400 (423)
T ss_dssp             CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence                          38999999999999999999999999998764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.87  E-value=1.1e-20  Score=162.73  Aligned_cols=227  Identities=12%  Similarity=0.091  Sum_probs=161.9

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |+++|++.+  .++++++++++++|++|.+.    ++++|.++|++||+ +|+|++|+ ++.  
T Consensus       111 ~g~~~~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~-li~D~a~~-~~~--  180 (382)
T 4hvk_A          111 QGFEVEYIPVGKYGEVDVSFIDQKL--RDDTILVSVQHANNEIGTIQ----PVEEISEVLAGKAA-LHIDATAS-VGQ--  180 (382)
T ss_dssp             TTCEEEEECBCTTSCBCHHHHHHHC--CTTEEEEECCSBCTTTCBBC----CHHHHHHHHSSSSE-EEEECTTT-BTT--
T ss_pred             cCCEEEEeccCCCCCcCHHHHHHHh--ccCceEEEEECCCCCceeeC----CHHHHHHHHHHcCE-EEEEhHHh-cCC--
Confidence            36677888765     899999999  45789999999999999886    68999999999999 99999994 221  


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--cc
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--EN  161 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~~  161 (266)
                      ..+.....+.+..+.+++|.++ + .++|+++++++.  .+.....       ....+.+...+.++.++++....  ++
T Consensus       181 ~~~~~~~~~~d~~~~s~~K~~g-~-~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  256 (382)
T 4hvk_A          181 IEVDVEKIGADMLTISSNDIYG-P-KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWRE  256 (382)
T ss_dssp             BCCCHHHHTCSEEEEESGGGTS-C-TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhcCCCEEEEeHHHhcC-C-CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHH
Confidence            1122233344444455779765 2 347888776654  2332211       12445577777777777776543  56


Q ss_pred             HHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----------
Q psy6547         162 MIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----------  230 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------  230 (266)
                      ..++++++++++.+.|++ ++. ..........+.   ++.+.++.   .+..++.+.|.++||.++++.          
T Consensus       257 ~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~  329 (382)
T 4hvk_A          257 EAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPN---NVNVRFSY---IEGESIVLSLDMAGIQASTGSACSSKTLQPS  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTT---EEEEEETT---CCHHHHHHHHHHTTCBCBCC--------CCC
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCC---EEEEEECC---CCHHHHHHHHHHCCEEEeeCCccCCCCCcch
Confidence            788888999999999887 532 111110112234   67776643   467889999999999998753          


Q ss_pred             -------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         231 -------------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       231 -------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                                   .+++|++++..+|++++++++++|+++++++..
T Consensus       330 ~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          330 HVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             HHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                         589999999899999999999999999988654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.87  E-value=1.8e-21  Score=165.53  Aligned_cols=224  Identities=13%  Similarity=0.054  Sum_probs=161.2

Q ss_pred             CcCcccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD   80 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D   80 (266)
                      ++.....+...+.+++.++.+     |+++|++.    .++++++++.++|++|.+.    +++++.++|+++++ +|+|
T Consensus       100 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~----~~~~~v~i~~p~nptG~~~----~~~~l~~l~~~~~~-~ivD  170 (337)
T 3p1t_A          100 FDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV----SRDDCVVLANPSNPTGQAL----SAGELDQLRQRAGK-LLID  170 (337)
T ss_dssp             CSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC----CTTEEEEEESSCTTTCCCC----CHHHHHHHHHHCSE-EEEE
T ss_pred             cHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh----cCCCEEEEeCCCCCCCCCC----CHHHHHHHHHhCCc-EEEE
Confidence            333344556678888888844     67777755    2468888888889999886    66678888888987 5669


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      |+|.+|+..+.. .....+....+.++||.++ +| +|+||+++++++.+.+...  ...++.+++++.++..+++..+.
T Consensus       171 ea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~  246 (337)
T 3p1t_A          171 ETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRA  246 (337)
T ss_dssp             CTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHH
T ss_pred             CCChhhcccccc-ccccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHH
Confidence            999877543332 1222234455667999998 89 9999999999998887653  34567788888888877764321


Q ss_pred             -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEE
Q psy6547         160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNII  234 (266)
Q Consensus       160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~i  234 (266)
                       ++..+++.++++++.+.|++ ++   +.. ..+.|.   ++++..++     ..++.+.|.++||.++++.    .+++
T Consensus       247 ~~~~~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~---~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~i  313 (337)
T 3p1t_A          247 REAHIAKTLAQRRRVADALRG-LG---YRV-ASSEAN---FVLVENAA-----GERTLRFLRERGIQVKDAGQFGLHHHI  313 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT---CCB-CCCSSS---EEEEECTT-----THHHHHHHHHTTEECEEGGGGTCCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-Cc---CEE-CCCCCe---EEEEEcCC-----HHHHHHHHHHCCeEEEECccCCCCCeE
Confidence             34556666777888888877 43   222 234566   88887654     3567888999999998763    5899


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |++++   ++++++++++.|+++.
T Consensus       314 Ris~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          314 RISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             EEECC---CHHHHHHHHHHHHHHT
T ss_pred             EEecC---CHHHHHHHHHHHHHHh
Confidence            99944   7999999999998765

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.87  E-value=4.2e-21  Score=166.73  Aligned_cols=230  Identities=14%  Similarity=0.072  Sum_probs=166.3

Q ss_pred             CCCCceeec-----CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIP-----YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~-----~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++     ..|+++|++.++++ ++++|++++++|++|.+.    ++++|.++|+++|+++|+||+|+ ++.  
T Consensus       115 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~li~Dea~~-~g~--  186 (396)
T 2ch1_A          115 YGADVRTIEGPPDRPFSLETLARAIELH-QPKCLFLTHGDSSSGLLQ----PLEGVGQICHQHDCLLIVDAVAS-LCG--  186 (396)
T ss_dssp             TTCEEEEEECCTTSCCCHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHHTTCEEEEECTTT-BTT--
T ss_pred             cCCceEEecCCCCCCCCHHHHHHHHHhC-CCCEEEEECCCCCCceec----CHHHHHHHHHHcCCEEEEEcccc-ccC--
Confidence            456677777     35899999999542 478888888889999885    48999999999999999999995 432  


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----------------------CCCCCCCCcHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----------------------THGSTYGGNPL  145 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~  145 (266)
                      ..+....  ..+|+++  ++|+++++ .++|++++++++++.+...                       ......+.+..
T Consensus       187 ~~~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (396)
T 2ch1_A          187 VPFYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASN  263 (396)
T ss_dssp             BCCCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHH
T ss_pred             Cccchhh--cCcCEEEEcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHH
Confidence            1222222  3456666  55999876 6779999988877655321                       01223456777


Q ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547         146 ACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKD  221 (266)
Q Consensus       146 ~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  221 (266)
                      ++.++.++++.+..   ++..++++++++++.+.|++ ++...+.... ...+.   ++++.++.  +.+..+++++|.+
T Consensus       264 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~L~~  337 (396)
T 2ch1_A          264 LIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-MGLDIFVKDPRHRLPT---VTGIMIPK--GVDWWKVSQYAMN  337 (396)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTT---EEEEECCT--TCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-CCCeeccCCccccCCc---eEEEEcCC--CCCHHHHHHHHHH
Confidence            78888888887643   35778888999999999988 5432222100 11244   78888764  4578899999987


Q ss_pred             C-CceeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         222 A-GLVTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       222 ~-gi~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      + ||.++++    ..+++|+++ ++..+++++++++++|+++++++.
T Consensus       338 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          338 NFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             HHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence            5 9999875    458999998 556799999999999999998763

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.87  E-value=5.6e-22  Score=177.73  Aligned_cols=247  Identities=12%  Similarity=0.085  Sum_probs=169.0

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCC---CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~---~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      +|.....+..++.+++.++.+       |+++|++.+++.+   ++++|+++.++|++|.+ ++.+.+++|+++|++||+
T Consensus       191 y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v-~s~~~l~~i~~la~~~~~  269 (498)
T 3ihj_A          191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQV-QSRKCIEDVIHFAWEEKL  269 (498)
T ss_dssp             CTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTC
T ss_pred             chhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCc
Confidence            343344455567788888865       8999999996532   48888888778888877 899999999999999999


Q ss_pred             EEEEeccccCcCCcC--ccccccc----C------CC-CcCeeeecccc-c-CCchhhhhhe---ecHHhhhccCCCCCC
Q psy6547          76 LFIADEVQTGLGRTG--KLLAIHY----E------DV-RPDIVILGKAL-S-GGLYPISAVL---ADDEVMGTLVPGTHG  137 (266)
Q Consensus        76 ~li~De~~~~~~~~g--~~~~~~~----~------~~-~~d~~~~sK~~-~-~g~~~~g~~~---~~~~~~~~~~~~~~~  137 (266)
                      +||+||+|..+...+  ...++..    .      .+ ...+.++||.+ | +| +|+||++   .++++.+.+.... .
T Consensus       270 ~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~~~-~  347 (498)
T 3ihj_A          270 FLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLVKLL-S  347 (498)
T ss_dssp             EEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHHHH-H
T ss_pred             EEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHHHHH-h
Confidence            999999997753322  1112111    0      11 12345699999 5 79 9999998   5888877765422 2


Q ss_pred             CCCCCcHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe
Q psy6547         138 STYGGNPLACKLAMTALD-----------VIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS  205 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~-----------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  205 (266)
                      ...+++.+++.++..+++           +++ .+.+.++++++++++.+.|++ +.  .+.......|+   ++|+.+.
T Consensus       348 ~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~--g~~~~~p~gg~---~~~~~l~  421 (498)
T 3ihj_A          348 VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VP--GIHCNPLQGAM---YAFPRIF  421 (498)
T ss_dssp             HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-ST--TEECCCCCBSS---EECCEEC
T ss_pred             ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEecCCCeEE---EEEEecc
Confidence            344567777777766653           222 134667888889999999988 52  23221233466   6665554


Q ss_pred             eCc---------cchHHHH-HH-HHHHCCceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         206 VSA---------ILEVYDV-CI-KMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       206 ~~~---------~~~~~~~-~~-~l~~~gi~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      ...         +.+..++ +. .|.++||.+.|+       +.+++|+++  ..+++++++++++|.+++++...
T Consensus       422 ~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~  495 (498)
T 3ihj_A          422 IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLE  495 (498)
T ss_dssp             CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            210         1233443 44 456789999874       245899995  48999999999999999988654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.87  E-value=1.9e-22  Score=176.40  Aligned_cols=238  Identities=12%  Similarity=0.043  Sum_probs=164.0

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      ++.....+...+.+++.++.       .|+++|++.+++++ ..+++++..++|++|.+ ++.+.+++|+++|++||+++
T Consensus       134 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~-~~~~~l~~l~~~~~~~~~~l  212 (412)
T 1yaa_A          134 WANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLD-PTSEQWVQIVDAIASKNHIA  212 (412)
T ss_dssp             CTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEE
T ss_pred             CccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEE
Confidence            33333444556788888887       27999999996543 34555557788888876 89999999999999999999


Q ss_pred             EEeccccCcCCcC---ccccc---ccCC----CCcCeeeecccccC-Cchhhhhhe--e-----cHH----hhhccCCCC
Q psy6547          78 IADEVQTGLGRTG---KLLAI---HYED----VRPDIVILGKALSG-GLYPISAVL--A-----DDE----VMGTLVPGT  135 (266)
Q Consensus        78 i~De~~~~~~~~g---~~~~~---~~~~----~~~d~~~~sK~~~~-g~~~~g~~~--~-----~~~----~~~~~~~~~  135 (266)
                      |+||+|.++...+   .....   ...+    ....+.++||.+++ | +|+||++  +     +++    +.+.+....
T Consensus       213 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~~~  291 (412)
T 1yaa_A          213 LFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKII  291 (412)
T ss_dssp             EEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            9999998875443   21122   1111    22335569999996 8 9999998  6     555    666555322


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEee
Q psy6547         136 HGSTYGGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSV  206 (266)
Q Consensus       136 ~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~  206 (266)
                      .....+++++++.++..+|+...        .+++.++++++++++.+.|++ ++.. .+....+..|.   ++|+.+  
T Consensus       292 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~--  365 (412)
T 1yaa_A          292 RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LGTPGNWDHIVNQCGM---FSFTGL--  365 (412)
T ss_dssp             HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCCTHHHHCCSS---EEECCC--
T ss_pred             hhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCeeeeccCceE---EEeeCC--
Confidence            33444557888888888887542        245677888888889888887 5421 12221223345   544422  


Q ss_pred             CccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         207 SAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       207 ~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          +...+...+.++||.+.+    ++|++++. .+++++++++++|+++++.
T Consensus       366 ----~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          366 ----TPQMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             ----CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence                345565555688999987    47999774 5999999999999998864

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.87  E-value=1.1e-22  Score=176.89  Aligned_cols=227  Identities=14%  Similarity=0.053  Sum_probs=157.7

Q ss_pred             CCCCCCceeecC---C----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPY---N----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~---~----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++.   +    |+++|++.+++++ +++++++++++|++|.+ ++.+.+++|+++|++||+++|+||+|++
T Consensus       135 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  213 (394)
T 2ay1_A          135 NFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGAN-LTLDQWAEIASILEKTGALPLIDLAYQG  213 (394)
T ss_dssp             HHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEECCTT
T ss_pred             HHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecCccc
Confidence            334667788876   3    7999999996542 46777778888888876 8999999999999999999999999988


Q ss_pred             cCCcC--cccccc---cCC-CCcCeeeeccccc-CCchhhhhhee---cHHhhhc----cCCCCCCCCCCCcHHHHHHHH
Q psy6547          86 LGRTG--KLLAIH---YED-VRPDIVILGKALS-GGLYPISAVLA---DDEVMGT----LVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        86 ~~~~g--~~~~~~---~~~-~~~d~~~~sK~~~-~g~~~~g~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      +...|  ......   ..+ ....+.++||+++ +| +|+||+++   ++++++.    +.........++++++++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~  292 (394)
T 2ay1_A          214 FGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVS  292 (394)
T ss_dssp             SSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHH
T ss_pred             cccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHH
Confidence            86543  111221   111 1223446999999 88 99999987   5654332    221111223334788888888


Q ss_pred             HHHHHH--------hhccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         152 TALDVI--------LEENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       152 ~~l~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      ++|+..        ..+++.++++++++++.+.|++ ++.. .+....+..|+   ++|+.++      .+.+...|.++
T Consensus       293 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~---~~~~~~~------~~~~~~~l~~~  362 (394)
T 2ay1_A          293 TVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHRGM---FSRLGAT------PEQVKRIKEEF  362 (394)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCCSS---EEECCCC------HHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEEcCCceE---EEeeCCC------HHHHHHHHHhC
Confidence            888644        1245677888888888888887 4421 23221223466   6665442      24566777799


Q ss_pred             CceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       223 gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ||.+.++    +|++++ .++++++++++++|+++
T Consensus       363 gi~v~~~----~Ris~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          363 GIYMVGD----SRINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             CEECCTT----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             CEEecCC----CeEEee-cCCHhhHHHHHHHHHHc
Confidence            9999885    599977 47999999999999875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.87  E-value=6.6e-22  Score=169.30  Aligned_cols=227  Identities=11%  Similarity=0.063  Sum_probs=162.5

Q ss_pred             ccCCCCCCceeecC-CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          12 EFGPHMPGYNIIPY-NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        12 ~~~~~~~~v~~~~~-~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+...+.+++.++. ++.+.+.     .+++++++++.++|++|.+ ++.+.+++|++.|+++  ++|+||+|.++...+
T Consensus       105 ~~~~~g~~~~~v~~~~~~~~~~-----~~~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~  176 (350)
T 3fkd_A          105 ACRMYEHEVCFYPSNEDIGEAD-----FSNMDFCWLCNPNNPDGRL-LQRTEILRLLNDHPDT--TFVLDQSYVSFTTEE  176 (350)
T ss_dssp             HHHHTTCEEEEEETTSCGGGSC-----CTTCSEEEEESSCTTTCCC-CCHHHHHHHHHHCTTS--EEEEECTTTTSCSSC
T ss_pred             HHHHcCCeEEEEecCCccccCc-----cCCCCEEEEeCCCCCcCCC-CCHHHHHHHHHhCCCC--EEEEECchhhhccCc
Confidence            34456778888887 5433221     1467888888888889987 6777777777776654  999999998876554


Q ss_pred             ccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hccHHHH
Q psy6547          91 KLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIEN  165 (266)
Q Consensus        91 ~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~  165 (266)
                      ...  ..+..+....+.++||.++ +| +|+||+++++++.+.+...  ..+++.+++++.++..+|+...  .+.+.+.
T Consensus       177 ~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  253 (350)
T 3fkd_A          177 VIRPADIKGRKNLVMVYSFSHAYGIPG-LRIGYIVANKDFMKRVAAF--STPWAVNALAIEAAKFILIHPAQFTLPIRKW  253 (350)
T ss_dssp             CCCGGGGTTCSSEEEEEESHHHHSCGG-GCCEEEECCHHHHHHHHTT--CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHH
T ss_pred             chhhHHhhcCCCEEEEecCchhccCcc-hheEeEEeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            422  2223334455667999999 88 9999999999998888753  3456789999999988887544  1334444


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccCC------CCEEEEec
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPIS------NNIIRLSP  238 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~------~~~iR~~~  238 (266)
                      . ++++++.+.|++ ++  .+.. .++.|.   ++++.++.  . ++.+++++|.+ +||.++++.      .+++|+++
T Consensus       254 ~-~~~~~l~~~L~~-~~--~~~~-~~~~~~---~~~~~~~~--~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~  322 (350)
T 3fkd_A          254 Q-RNTVDFITALNR-LD--GVEV-HPSGTT---FFLLRLKK--G-TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITT  322 (350)
T ss_dssp             H-HHHHHHHHHHHH-ST--TEEE-CCCSSS---EEEEEESS--S-CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC
T ss_pred             H-HHHHHHHHHHhc-CC--CcEE-CCCCCc---EEEEECCC--C-CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc
Confidence            4 778888888877 42  2322 334566   88888876  3 68899999998 999998752      68999994


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         239 ALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +   ++++++++++.|++..++..+
T Consensus       323 ~---~~~~~~~l~~al~~~~~~~~~  344 (350)
T 3fkd_A          323 Q---RPAQNQLFIKALETFLEKYEG  344 (350)
T ss_dssp             C---CHHHHHHHHHHHHHHHTC---
T ss_pred             C---CHHHHHHHHHHHHHHHHHhcc
Confidence            3   889999999999998876544

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.86  E-value=7.2e-22  Score=173.35  Aligned_cols=232  Identities=14%  Similarity=0.095  Sum_probs=161.7

Q ss_pred             ccccCCCCCCceeecC----C---CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547          10 YNEFGPHMPGYNIIPY----N---DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus        10 ~~~~~~~~~~v~~~~~----~---d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      ...+...+.+++.+++    +   |+++|++.+++. ++++++++++++|++|.+ ++.+.+++|+++|++||+++|+||
T Consensus       157 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~De  235 (420)
T 4f4e_A          157 RALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVD-LNDAQWAQVVEVVKARRLVPFLDI  235 (420)
T ss_dssp             HHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcc
Confidence            3345556788888887    3   799999999653 468899999999999977 899999999999999999999999


Q ss_pred             cccCcCCcCc--cccc----ccCCCCcCeeeeccccc-CCchhhhhhee---cHHhhhcc----CCCCCCCCCCCcHHHH
Q psy6547          82 VQTGLGRTGK--LLAI----HYEDVRPDIVILGKALS-GGLYPISAVLA---DDEVMGTL----VPGTHGSTYGGNPLAC  147 (266)
Q Consensus        82 ~~~~~~~~g~--~~~~----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~  147 (266)
                      +|.++...+.  ....    ...+....+.++||.++ +| +|+||+++   ++++++.+    .......+.+++.+++
T Consensus       236 ~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (420)
T 4f4e_A          236 AYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGG  314 (420)
T ss_dssp             SCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHH
T ss_pred             ccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence            9988755431  1111    12233444556999999 79 99999863   45544332    2111233444566777


Q ss_pred             HHHHHHHHHH------h--hccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHH
Q psy6547         148 KLAMTALDVI------L--EENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIK  218 (266)
Q Consensus       148 ~a~~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  218 (266)
                      .++..+++..      .  -+++.++++++++.+.+.|++ +.. ..+....+..|+   ++|+.+      +.+.+.+.
T Consensus       315 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~g~---~~~~~~------~~~~~~~~  384 (420)
T 4f4e_A          315 AIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKA-AGIERDFSFINAQRGM---FSYSGL------TSAQVDRL  384 (420)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHHHHSCSS---EEECCC------CHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCceeECCCccE---EEEeCC------CHHHHHHH
Confidence            7766666532      1  145678888888999999887 432 233331234566   665444      34566777


Q ss_pred             HHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         219 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       219 l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |.++||.+.+++    |+++. ..+++++++++++|++++
T Consensus       385 l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          385 REEFGIYAVSTG----RICVA-ALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             HHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred             HHhCCEEecCCC----eEEEe-cCCHHHHHHHHHHHHHHh
Confidence            789999999863    99875 347778999999999875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.86  E-value=8.3e-22  Score=171.34  Aligned_cols=230  Identities=15%  Similarity=0.114  Sum_probs=159.1

Q ss_pred             cccCCCCCCceeecC----C---CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          11 NEFGPHMPGYNIIPY----N---DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~----~---d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ..+...+.+++.+++    +   |+++|++.++++ ++++++++++++|++|.+ ++.+.+++|+++|++||+++|+||+
T Consensus       136 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~  214 (397)
T 3fsl_A          136 AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKARELIPFLDIA  214 (397)
T ss_dssp             HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHhCCEEEEEecC
Confidence            334556788899987    3   899999999653 467888888889989876 8999999999999999999999999


Q ss_pred             ccCcCCcC--cccc---c-ccCCCCcCeeeeccccc-CCchhhhhhee---cHHhhhccCCC----CCCCCCCCcHHHHH
Q psy6547          83 QTGLGRTG--KLLA---I-HYEDVRPDIVILGKALS-GGLYPISAVLA---DDEVMGTLVPG----THGSTYGGNPLACK  148 (266)
Q Consensus        83 ~~~~~~~g--~~~~---~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~  148 (266)
                      |.++...+  ....   + ...+....+.++||.++ +| +|+||+++   ++++++.+...    ....+.+++.+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 3fsl_A          215 YQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQ  293 (397)
T ss_dssp             CTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHH
T ss_pred             chhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence            98875432  1111   1 22334455666999999 78 99999864   44444332211    11233444666776


Q ss_pred             HHHHHHHHH------h--hccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHH
Q psy6547         149 LAMTALDVI------L--EENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM  219 (266)
Q Consensus       149 a~~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l  219 (266)
                      ++..+++..      .  .+++.++++++++++.+.|++ +... .+....+..|.   ++|+.+      +.+.+...|
T Consensus       294 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~l  363 (397)
T 3fsl_A          294 VVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMPERNFDYLLNQRGM---FSYTGL------SAAQVDRLR  363 (397)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSCCTHHHHCCSS---EEECCC------CHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCceeecCCceE---EEecCC------CHHHHHHHH
Confidence            666655421      1  245678888888999999887 4321 23321233466   666544      235567777


Q ss_pred             HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         220 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       220 ~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .++||.+.+++    |+++. ..+++++++++++|+++
T Consensus       364 ~~~gi~v~~g~----Ris~~-~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          364 EEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             HTTCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HhCCEEECCCC----eEEEE-ecCHhhHHHHHHHHHhh
Confidence            88999999875    88875 33678899999999875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.86  E-value=5.5e-22  Score=173.22  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=161.1

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      +++.....+...+.+++.++..       |+++|++.+++.++.++++++++ +|++|.+ ++.+.+++|+++|++||++
T Consensus       131 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~-~s~~~~~~l~~~~~~~~~~  209 (405)
T 3k7y_A          131 PYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVN-IEEKYFDEIIEIVLHKKHV  209 (405)
T ss_dssp             CCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHCCE
T ss_pred             CCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCeE
Confidence            4455555667788888888751       78999999966556678888775 7888877 9999999999999999999


Q ss_pred             EEEeccccCcCCcCc---ccc---c-ccCCCCcCeeeeccccc-CCchhhhhhee---cHHhhhccC----CCCCCCCCC
Q psy6547          77 FIADEVQTGLGRTGK---LLA---I-HYEDVRPDIVILGKALS-GGLYPISAVLA---DDEVMGTLV----PGTHGSTYG  141 (266)
Q Consensus        77 li~De~~~~~~~~g~---~~~---~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~~~~~~~----~~~~~~~~~  141 (266)
                      +|+||+|.+|...+.   ...   + ........+.+|||.++ +| +|+||+++   ++++.+.+.    .........
T Consensus       210 vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  288 (405)
T 3k7y_A          210 IIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSS  288 (405)
T ss_dssp             EEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            999999988753221   111   1 11122334456999999 89 99999853   555544332    111122223


Q ss_pred             CcHHHHHHHHHHHHHH------hh--ccHHHHHHHHHHHHHHHhh----ccccc-CCCcccEEecCccceeeEEEEeeCc
Q psy6547         142 GNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSELS----SPANK-SKASFKLSSGGLKKSINTLILSVSA  208 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~----~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~  208 (266)
                      .+.+++.++..+++.-      ..  ..++++++++++.+.+.|+    + ++. ..+....+..|+   |+|+.++.  
T Consensus       289 ~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~-~g~~~~~~~~~p~gg~---f~~~~l~~--  362 (405)
T 3k7y_A          289 PVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK-YNLNYDWNVYKKQRGL---FSFVPLLA--  362 (405)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCCCCGGGGSSCCSS---EEECGGGG--
T ss_pred             CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCCCccccCCceE---EEecCCCH--
Confidence            4567777776666531      11  2456668888889999988    6 542 122321334566   66654422  


Q ss_pred             cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                           +++++|.++||.+.|++    |++.. ..+++++++++++|.++++.
T Consensus       363 -----~~~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          363 -----KIAEHLKTHHIYIINNG----RINVS-GITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             -----GGTTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence                 34566778899999964    99854 34788999999999998753

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.85  E-value=4.8e-20  Score=159.14  Aligned_cols=229  Identities=12%  Similarity=0.103  Sum_probs=159.8

Q ss_pred             CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.     .|+++|++.++  +++++|++++++|++|.+.    ++++|.++|++||++ |+||+|+ ++.. 
T Consensus       111 ~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~-i~D~a~~-~g~~-  181 (382)
T 4eb5_A          111 QGFEVEYIPVGKYGEVDVSFIDQKLR--DDTILVSVQHANNEIGTIQ----PVEEISEVLAGKAAL-HIDATAS-VGQI-  181 (382)
T ss_dssp             TTCEEEEECBCTTSCBCHHHHHHHCC--TTEEEEECCSBCTTTCBBC----CHHHHHHHHTTSSEE-EEECTTT-BTTB-
T ss_pred             CCcEEEEeccCCCCccCHHHHHHHhc--CCCeEEEEeccCCCccccC----CHHHHHHHHHHCCCE-EEEcchh-cCCc-
Confidence            5667888876     38999999993  4689999999999999886    589999999999999 9999995 4321 


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCC----CCCCCCCCcHHHHHHHHHHHHHHhh--ccHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPG----THGSTYGGNPLACKLAMTALDVILE--ENMI  163 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~  163 (266)
                       .+....++.+.-+.++||.++.  .++|+++++++. ++.....    ......+.+...+.++.++++.+.+  +++.
T Consensus       182 -~~~~~~~~~di~~~s~sK~~g~--~g~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  258 (382)
T 4eb5_A          182 -EVDVEKIGADMLTISSNDIYGP--KGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEA  258 (382)
T ss_dssp             -CCCHHHHTCSEEEEETGGGTCC--SSCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCccccCCCEEEeehHHhcCC--CceEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence             1222222333333447898663  237888887763 2211110    1122345566667777777776654  4577


Q ss_pred             HHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------------
Q psy6547         164 ENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------------  230 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------  230 (266)
                      ++++++++++.+.|++ +.. ..........+.   ++++.++.   .+..+++++|.++||.+.++.            
T Consensus       259 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~  331 (382)
T 4eb5_A          259 ERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPN---NVNVRFSY---IEGESIVLSLDMAGIQASTGSACSSKTLQPSHV  331 (382)
T ss_dssp             HHHHHHHHHHHHHHTT-STTEEECSCSSSBCTT---EEEEEETT---SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHH
T ss_pred             HHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCC---EEEEEeCC---cCHHHHHHHHHHCCEEEeccccccCCCCcccHH
Confidence            8888889999999887 421 111110001255   77887753   357889999999999998753            


Q ss_pred             -----------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         231 -----------NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       231 -----------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                                 .+++|++++..++++++++++++|+++++++..
T Consensus       332 ~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          332 LMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             HHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                       479999988888999999999999999887654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.85  E-value=1.1e-21  Score=173.62  Aligned_cols=230  Identities=11%  Similarity=0.106  Sum_probs=158.5

Q ss_pred             CCCCCceeecC---C-----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          15 PHMPGYNIIPY---N-----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        15 ~~~~~v~~~~~---~-----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ..+.+++.+++   +     |+++|++.+++.+ ++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|.+
T Consensus       168 ~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~  246 (448)
T 3meb_A          168 KLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQG  246 (448)
T ss_dssp             TTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred             hCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence            67788888886   2     7899999997543 57787888888989977 8999999999999999999999999988


Q ss_pred             cCCcCc---ccccccC-CCCcC---eeeeccccc-CCchhhhhh--ee--------c-H----HhhhccCCCCCCCCCCC
Q psy6547          86 LGRTGK---LLAIHYE-DVRPD---IVILGKALS-GGLYPISAV--LA--------D-D----EVMGTLVPGTHGSTYGG  142 (266)
Q Consensus        86 ~~~~g~---~~~~~~~-~~~~d---~~~~sK~~~-~g~~~~g~~--~~--------~-~----~~~~~~~~~~~~~~~~~  142 (266)
                      |+..+.   ......+ +...+   +.++||.++ +| +|+||+  ++        . +    ++.+.+.......+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  325 (448)
T 3meb_A          247 FATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMS  325 (448)
T ss_dssp             TSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             ccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcc-ccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCc
Confidence            865431   1111111 11233   556999999 78 999997  55        3 4    45554443233445556


Q ss_pred             cHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccCC------CcccEEecCccceeeEEEEeeCc
Q psy6547         143 NPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKSK------ASFKLSSGGLKKSINTLILSVSA  208 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~  208 (266)
                      +.+++.++..+|+...        -+++.++++++++++.+.|++ ++.+.      +....+..|+   +.|..+    
T Consensus       326 ~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~~~~~~g~---~~~~~~----  397 (448)
T 3meb_A          326 AIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAK-RKTPGPGSKGTWDHILTAIGM---FTFTGL----  397 (448)
T ss_dssp             CHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCSTTTCCCTHHHHCCSS---EEECCC----
T ss_pred             cHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCcCcccccceeCCCceE---EEecCC----
Confidence            7778877777764321        145677788888888888887 53222      3221223444   444333    


Q ss_pred             cchHHHHHHHH-HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       209 ~~~~~~~~~~l-~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                        + .+++..| .++||.+.|+..   |+++. ..+++++++++++|.++++++
T Consensus       398 --~-~~~~~~ll~~~gV~v~~G~g---Ris~a-~~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          398 --T-PEHVDYLKEKWSIYLVKAGG---RMSMC-GLTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             --C-HHHHHHHHHHHCEEECSGGG---EEEGG-GCCTTTHHHHHHHHHHHHHHS
T ss_pred             --C-HHHHHHHHHhCCEEEeCCCc---EEEEe-cCCHHHHHHHHHHHHHHHHhc
Confidence              2 2455555 577999999642   99864 337777999999999998854

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.85  E-value=8.7e-22  Score=167.70  Aligned_cols=194  Identities=12%  Similarity=0.071  Sum_probs=141.7

Q ss_pred             CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc-cccCCCCcCeeeeccccc-CCchh
Q psy6547          40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVILGKALS-GGLYP  117 (266)
Q Consensus        40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~  117 (266)
                      ++++|+++.++|++|.+ ++.+.+++|++.|   | ++|+||+|+++.. +.... .+..+....+.++||+++ +| +|
T Consensus       138 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r  210 (335)
T 1uu1_A          138 EGDVVFIPNPNNPTGHV-FEREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QR  210 (335)
T ss_dssp             TTEEEEEESSCTTTCCC-CCHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GC
T ss_pred             CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cC
Confidence            56788855557888877 6777666666665   8 8999999987632 22112 233344556677999998 88 99


Q ss_pred             hhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCcc
Q psy6547         118 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLK  196 (266)
Q Consensus       118 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~  196 (266)
                      +||+++++++.+.+...  ..+++.+++++.++.++|+..+ .++..++++++++++.+.|++ .+.   .. .++.|. 
T Consensus       211 ~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~---~~-~~~~~~-  282 (335)
T 1uu1_A          211 VGYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE-MGY---RI-TDSRGN-  282 (335)
T ss_dssp             CEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HTC---CB-CCCCSS-
T ss_pred             eEEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-CCc---EE-cCCCCe-
Confidence            99999999888776542  2346889999999988887632 245677888888889888887 432   22 233466 


Q ss_pred             ceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         197 KSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                        ++++.++.   .+..+++++|.++||.+.+. .+++|+++.   +++++++++++|+++
T Consensus       283 --~~~~~~~~---~~~~~~~~~l~~~gi~v~~~-~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          283 --FVFVFMEK---EEKERLLEHLRTKNVAVRSF-REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             --EEEEECCT---HHHHHHHHHHHHHTEEEEEE-TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             --EEEEECCC---CCHHHHHHHHHHCCEEEEEC-CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence              88888754   35778999999999999984 789999953   578899999998753

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.85  E-value=2.1e-20  Score=161.50  Aligned_cols=227  Identities=17%  Similarity=0.143  Sum_probs=160.8

Q ss_pred             CCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcC
Q psy6547          16 HMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLG   87 (266)
Q Consensus        16 ~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~   87 (266)
                      .+.+++.++.      .|+++|+++++++ ++++|++++++|++|.+.    ++++|.++|++|  |+++|+||+|+ ++
T Consensus       108 ~g~~~~~v~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~~----~l~~i~~~~~~~~~~~~li~D~a~~-~~  181 (385)
T 2bkw_A          108 YGAQVDVVRPLKIGESVPLELITEKLSQN-SYGAVTVTHVDTSTAVLS----DLKAISQAIKQTSPETFFVVDAVCS-IG  181 (385)
T ss_dssp             TTCEEEEECCSSTTSCCCHHHHHHHHHHS-CCSEEEEESEETTTTEEC----CHHHHHHHHHHHCTTSEEEEECTTT-TT
T ss_pred             cCCceEEEecCCCCCCCCHHHHHHHHhcC-CCCEEEEEccCCCcCeEc----CHHHHHHHHHhhCCCCEEEEECccc-cC
Confidence            4567777776      4899999999642 578999999999999886    689999999999  99999999995 32


Q ss_pred             CcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhh-ccCC----------------------CCC---CCCCC
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMG-TLVP----------------------GTH---GSTYG  141 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~-~~~~----------------------~~~---~~~~~  141 (266)
                      .  ..+....++.+..+.+++|+++++ ..+|++++++++++ .+..                      ...   ....+
T Consensus       182 ~--~~~~~~~~~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (385)
T 2bkw_A          182 C--EEFEFDEWGVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFAT  258 (385)
T ss_dssp             T--SCCCTTTTTCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSC
T ss_pred             C--ccccccccCceEEEecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCC
Confidence            2  122233333333333478998854 45699999888766 4420                      000   11235


Q ss_pred             CcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHh-hcccccCCCcccE-E-ecCccceeeEEEEeeCccchHHHH
Q psy6547         142 GNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL-SSPANKSKASFKL-S-SGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      .+...+.++.++++.+..   +++.++++++++++.+.| ++ ++........ . ..+.   ++++.+++     ..++
T Consensus       259 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~  329 (385)
T 2bkw_A          259 PPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-LQLTSVSRYPSNMSAHG---LTAVYVAD-----PPDV  329 (385)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-TCCEESSCSSSTTBCSS---CEEEECSC-----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-cCceecccCcccccCCc---eEEEecCC-----HHHH
Confidence            677777788888887654   346788889999999999 77 4322121100 0 2355   88888753     6789


Q ss_pred             HHHHHHCCceeccCC-----CCEEEEe-cc---CCCCHHHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPIS-----NNIIRLS-PA---LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~-----~~~iR~~-~~---~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +++|.++||.++++.     .+++|++ ++   +.++++++++++++|++++++
T Consensus       330 ~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          330 IAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             HHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            999999999998753     4789999 54   357999999999999988754

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.85  E-value=2.6e-20  Score=168.48  Aligned_cols=234  Identities=14%  Similarity=0.069  Sum_probs=149.9

Q ss_pred             CCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHH--HhcCCEEEEeccccCc
Q psy6547          16 HMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC--SQYNVLFIADEVQTGL   86 (266)
Q Consensus        16 ~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~--~~~g~~li~De~~~~~   86 (266)
                      .+.+++.++.       .|+++|++.+  .+++++|++++++|++|.+ ++.+.+++|.++|  +++|++||+||+|.+|
T Consensus       216 ~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~v~l~~p~NPtG~~-~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~  292 (546)
T 2zy4_A          216 YALEEVAINADPSLNWQYPDSELDKLK--DPAIKIFFCVNPSNPPSVK-MDQRSLERVRNIVAEHRPDLMILTDDVYGTF  292 (546)
T ss_dssp             SCCEEEEEECBGGGTTBCCHHHHGGGG--STTEEEEEEESSCSSSCBC-CCHHHHHHHHHHHHHTCTTCEEEEECTTGGG
T ss_pred             CCcEEEEEecCcccCCCCCHHHHHHhh--CCCCeEEEEECCCCCCCcc-CCHHHHHHHHHHHHhccCCcEEEEeCcchhh
Confidence            3566777764       4788998877  4578999888888888877 8999999999999  8899999999999877


Q ss_pred             CCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHH-hhhccCC-------------------------------
Q psy6547          87 GRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDE-VMGTLVP-------------------------------  133 (266)
Q Consensus        87 ~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~-~~~~~~~-------------------------------  133 (266)
                      ......+.....+....+.+|||.++ +| +|+||++++++ +++.+..                               
T Consensus       293 ~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~  371 (546)
T 2zy4_A          293 ADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLV  371 (546)
T ss_dssp             STTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHH
T ss_pred             cccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhh
Confidence            53222111111133455667999998 88 99999998775 5544410                               


Q ss_pred             -----CCCCCCCCCcHHHHHHHH-HHH-HHHhh-cc----HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeE
Q psy6547         134 -----GTHGSTYGGNPLACKLAM-TAL-DVILE-EN----MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINT  201 (266)
Q Consensus       134 -----~~~~~~~~~~~~~~~a~~-~~l-~~~~~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~  201 (266)
                           .....+.+.+.+.+.++. .++ ..++. +.    +++.++++.+.+.+.|    +. .+.......|.   ++|
T Consensus       372 ~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L----~~-~~~~~~~~~~~---~l~  443 (546)
T 2zy4_A          372 ADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYREL----GM-PPLRDENAVDY---YTL  443 (546)
T ss_dssp             HHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGG----TS-SCCCCTTBCCS---EEE
T ss_pred             hhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc----CC-CcccCCCCeeE---EEE
Confidence                 011223355666655431 111 22222 22    3333444444444333    21 12211234566   778


Q ss_pred             EEEeeC-----c---------cc-hHHHHHHHHHHCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         202 LILSVS-----A---------IL-EVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       202 ~~~~~~-----~---------~~-~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.++.-     .         +. +...+.+.|.++||.+.|+     +.+++|+++. ..+++++++++++|++++++.
T Consensus       444 ~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~  522 (546)
T 2zy4_A          444 IDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADEL  522 (546)
T ss_dssp             EEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHH
Confidence            887520     0         01 2344666777999999986     2478999965 348999999999999998776


Q ss_pred             h
Q psy6547         262 A  262 (266)
Q Consensus       262 ~  262 (266)
                      .
T Consensus       523 ~  523 (546)
T 2zy4_A          523 Y  523 (546)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.85  E-value=1.3e-20  Score=161.00  Aligned_cols=233  Identities=12%  Similarity=0.148  Sum_probs=157.1

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-   85 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-   85 (266)
                      .+.+++.+ .+     |+++|+++++++    +++++|++++++|++|+..++.+++++|.++|++||+++|+||+|.. 
T Consensus       100 ~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~  178 (347)
T 1jg8_A          100 SGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN  178 (347)
T ss_dssp             TCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHH
T ss_pred             cCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhc
Confidence            34566666 32     899999999542    26899999999999833448999999999999999999999998731 


Q ss_pred             -cCCcCcccccccCCCCcCeeeecccccCCchhhh-hheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          86 -LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS-AVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        86 -~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                       +...+........+.+.-+.++||+++++   +| ++++++++++.+...  ....++..+.+.++++..+++... +.
T Consensus       179 ~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~  254 (347)
T 1jg8_A          179 ASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR  254 (347)
T ss_dssp             HHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT
T ss_pred             chhhcCCChHHhcccccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH
Confidence             11112111100012232345599999854   56 566787776654321  122333445566666666665421 22


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                       .++..++++.+.+.|++ ++.. +.. ....+.   ++++.++.. +.+..+++++|.++||.+++.+.+++|++++..
T Consensus       255 -~~~~~~~~~~l~~~L~~-~~~~-~~~-~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~  326 (347)
T 1jg8_A          255 -LKEDHENARFLALKLKE-IGYS-VNP-EDVKTN---MVILRTDNL-KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKD  326 (347)
T ss_dssp             -HHHHHHHHHHHHHHHHH-HTCB-CCG-GGCCSS---EEEEECTTS-SSCHHHHHHHHHHHTEECEEEETTEEEEECCTT
T ss_pred             -HHHHHHHHHHHHHHHHh-cCce-ecc-CCCcce---EEEEEcccc-cCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCC
Confidence             34444567888888887 4322 111 123466   888887631 246788999999999999987778999999888


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++++++++++|+++++++
T Consensus       327 ~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          327 VSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            89999999999999988653

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.85  E-value=1.7e-20  Score=162.79  Aligned_cols=224  Identities=15%  Similarity=0.077  Sum_probs=157.6

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.+|+++|++.++  +++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+++... .. 
T Consensus       113 ~~~g~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~De~~~~~~~~-~~-  184 (386)
T 1cs1_A          113 KRGCYRVLFVDQGDEQALRAALA--EKPKLVLVESPSNPLLRVV----DIAKICHLAREVGAVSVVDNTFLSPALQ-NP-  184 (386)
T ss_dssp             TTTSCEEEEECTTCHHHHHHHHH--TCCSEEEEECSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTCTTTC-CG-
T ss_pred             HhcCCEEEEeCCCCHHHHHHhhc--cCCcEEEEeCCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCcccccC-Cc-
Confidence            55678899999999999999995  4689999999999999886    7999999999999999999999765322 21 


Q ss_pred             ccccCCCCcCeeeecccccCCchhh-hhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSGGLYPI-SAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       . .++.+..+.++||+++++..++ |++++++ ++.+.+.......+.+.+++.+.++..+++.+  +...++..++.+
T Consensus       185 -~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~  260 (386)
T 1cs1_A          185 -L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRMELAQRNAQ  260 (386)
T ss_dssp             -G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHH
T ss_pred             -c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH--HHHHHHHHHHHH
Confidence             1 2344555557999998432565 8998875 67776654333334557788777776666543  223455566666


Q ss_pred             HHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---C----
Q psy6547         172 IFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---I----  229 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~----  229 (266)
                      .+.+.+++ +..      +.+..         ..++.|.   ++.|.+..    ..+++.+.|.++||.++.   +    
T Consensus       261 ~l~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~l~~~gi~~~~~~~g~~~s  332 (386)
T 1cs1_A          261 AIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGA---MLSFELDG----DEQTLRRFLGGLSLFTLAESLGGVES  332 (386)
T ss_dssp             HHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEESS----CHHHHHHHHHTCSSSEEBSCCCSSSC
T ss_pred             HHHHHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCce---EEEEEECC----CHHHHHHHHHhCCcceEcccCCCcce
Confidence            77777665 321      11111         0123466   88888765    256788888899998873   1    


Q ss_pred             -----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 -----------------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 -----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                             ..+++|++++...++++++.+.+.|+++
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          333 LISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             EEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                                   1479999999877777777777766654

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.85  E-value=1.8e-21  Score=170.12  Aligned_cols=230  Identities=13%  Similarity=0.073  Sum_probs=156.3

Q ss_pred             cccCCCCCCceeecCC-------CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547          11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      ..+...+.+++.++.+       |+++|++.+++.+ ..++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+
T Consensus       146 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~De~  224 (409)
T 4eu1_A          146 SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVD-PTHDDWRQVCDVIKRRNHIPFVDMA  224 (409)
T ss_dssp             HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEEEecc
Confidence            3445567788888752       7999999996533 56677767778888876 8999999999999999999999999


Q ss_pred             ccCcCCcCc---cccccc-CCCCcC---eeeeccccc-CCchhhhhh---eecHH----hhhccCCCCCCCCCCCcHHHH
Q psy6547          83 QTGLGRTGK---LLAIHY-EDVRPD---IVILGKALS-GGLYPISAV---LADDE----VMGTLVPGTHGSTYGGNPLAC  147 (266)
Q Consensus        83 ~~~~~~~g~---~~~~~~-~~~~~d---~~~~sK~~~-~g~~~~g~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      |.++...+.   ...... .+..++   +.++||.++ +| +|+||+   +++++    +.+.+.......+++.+++++
T Consensus       225 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  303 (409)
T 4eu1_A          225 YQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGA  303 (409)
T ss_dssp             CTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHH
Confidence            988755441   111111 122233   346999998 88 999995   55666    555544322344556678888


Q ss_pred             HHHHHHHHHH------h--hccHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHH
Q psy6547         148 KLAMTALDVI------L--EENMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIK  218 (266)
Q Consensus       148 ~a~~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  218 (266)
                      .++..+|+..      .  .++++++++++++++.+.|++ ++.+. +....+..|.   +.|..+      + .+++.+
T Consensus       304 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~---~~~~~~------~-~~~~~~  372 (409)
T 4eu1_A          304 WVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-CGSVHDWSHIERQVGM---MAYTGL------T-REQVEL  372 (409)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHSCSS---EEECCC------C-HHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCCceE---EEEeCC------C-HHHHHH
Confidence            8888777632      1  245677888888889888887 54211 3221223344   444322      2 244566


Q ss_pred             HH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         219 MK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       219 l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      |+ ++||.+.|+.    |++.+. .+++++++++++|++++
T Consensus       373 ll~~~gv~v~p~~----Ri~~~~-~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          373 LRSEYHIYMTLNG----RAAVSG-LNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             HHHHHCEECCTTC----EEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred             HHHcCCEEEcCCC----EEEEEe-cCHhhHHHHHHHHHHHh
Confidence            65 6799999863    777654 56777999999998875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.84  E-value=1.8e-20  Score=163.27  Aligned_cols=226  Identities=13%  Similarity=0.086  Sum_probs=157.2

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.+|++++++.+  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|..+ ..+...
T Consensus       125 ~~~g~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~  197 (398)
T 2rfv_A          125 PKFGINVRFVDAAKPEEIRAAM--RPETKVVYIETPANPTLSLV----DIETVAGIAHQQGALLVVDNTFMSP-YCQQPL  197 (398)
T ss_dssp             HHTTCEEEEECTTSHHHHHHHC--CTTEEEEEEESSBTTTTBCC----CHHHHHHHHHHTTCEEEEECTTTCT-TTCCGG
T ss_pred             HHcCCEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence            4457789999999999999999  45789999999999999886    6999999999999999999999643 222221


Q ss_pred             ccccCCCCcCeeeeccccc-CCchhh-hhheecHHhhh-ccCCCCCCC-CCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALS-GGLYPI-SAVLADDEVMG-TLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~-~g~~~~-g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                         .++.+..+.++||+++ +| +|+ |++++++++++ .+....... ..+.+++.+.++.++++.+  +...++..++
T Consensus       198 ---~~~~di~~~s~sK~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~  271 (398)
T 2rfv_A          198 ---QLGADIVVHSVTKYINGHG-DVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL--GIRMERHCEN  271 (398)
T ss_dssp             ---GGTCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHH
T ss_pred             ---hhCCcEEEEeCcccccCCC-CceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH--HHHHHHHHHH
Confidence               2345555577999997 56 788 99999988776 455433333 4567888888888888643  2234445556


Q ss_pred             HHHHHHHhhcccc------cCCCcc------c---EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----
Q psy6547         170 GEIFRSELSSPAN------KSKASF------K---LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~------~~~~~~------~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----  229 (266)
                      .+.+.+.|++ .+      .+.+..      .   .++.|.   +++|.++.. ..+...+.+++...|+.+.++     
T Consensus       272 ~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~---~~~~~~~~~-~~~~~~l~~~~~~~~i~~~~G~~~~l  346 (398)
T 2rfv_A          272 ALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGG---IISFEIAGG-LEAGRRMINSVELCLLAVSLGDTETL  346 (398)
T ss_dssp             HHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEETTH-HHHHHHHHTTCSSSEECSCCSSSSCE
T ss_pred             HHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCce---EEEEEEcCC-HHHHHHHHHhCCcceeccCCCCccee
Confidence            6666666665 21      111110      0   013466   899988641 123444555555556665543     


Q ss_pred             --------------------C--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 --------------------S--NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 --------------------~--~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                          +  .+.+|++++..+++++++++.+.|+++
T Consensus       347 i~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          347 IQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             EECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence                                1  579999999999999998888888653

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.84  E-value=4.3e-20  Score=156.82  Aligned_cols=222  Identities=13%  Similarity=0.053  Sum_probs=154.0

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh-cCCEEEEeccccCcCCcCcccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~-~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .+.+++.++..|++++++.+  .+++++|++++++|++|.+.    ++++|.++|++ +|+++|+||+|+.. .....  
T Consensus        61 ~g~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~~~~i~~~~~~~~~~~li~D~a~~~~-~~~~~--  131 (331)
T 1pff_A           61 FGVEVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVI----DIEDAVKQARKQKDILVIVDNTFASP-ILTNP--  131 (331)
T ss_dssp             TTCEEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHTTSSSCEEEEECTTTHH-HHCCG--
T ss_pred             cCCEEEEeCCCCHHHHHHhh--cCCCeEEEEECCCCCcCccc----CHHHHHHHHhhhcCCEEEEECCCccc-ccCCh--
Confidence            56788889989999999999  45789999999999999986    69999999999 99999999999532 11111  


Q ss_pred             cccCCCCcCeeeeccccc-CCchh-hhhheecH-HhhhccCCCCCC-CCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALS-GGLYP-ISAVLADD-EVMGTLVPGTHG-STYGGNPLACKLAMTALDVILE--ENMIENAYK  168 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~-~g~~~-~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~  168 (266)
                      . .++.+..+.++||+++ +| .| +|++++++ ++.+.+...... .+.+.+++.+.++..+++.+..  +...++...
T Consensus       132 ~-~~~~d~~~~s~~K~~~~~~-~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  209 (331)
T 1pff_A          132 L-DLGVDIVVHSATKYINGHT-DVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQK  209 (331)
T ss_dssp             G-GGTCSEEEEETTTTTSSSS-SCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-hcCCcEEEEECccccCCCC-CceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence            2 2455555666999998 46 77 78999998 888877765555 5567788887777667764422  223333333


Q ss_pred             HHHHHHHH--hhcccccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------
Q psy6547         169 MGEIFRSE--LSSPANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------  229 (266)
Q Consensus       169 ~~~~l~~~--l~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------  229 (266)
                      ..+++.++  +.+.+ ...+..         ..++.+.   ++.|.+.+     .+++.+.|.++||.+++.        
T Consensus       210 ~~~~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~l~~~gI~~~~~s~g~~~sl  280 (331)
T 1pff_A          210 VAEFLHEHKAVKKVY-YPGLPDHPGHEIAKKQMKMFGS---MIAFDVDG-----LEKAKKVLDNCHVVSLAVSLGGPESL  280 (331)
T ss_dssp             HHHHHHHCTTCCCEE-CTTSTTSTTHHHHHHHCSSCCS---EEEEECSS-----HHHHHHHHHTCSSSEECSSCCSSSCE
T ss_pred             HHHHHHcCCCeeEEE-CCCCCCCccHHHHHhhCCCCce---EEEEEECC-----HHHHHHHHHhCCCceeccCCCCccee
Confidence            33333322  11100 011111         0122455   88888753     567888888999976432        


Q ss_pred             ----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 ----------------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                            ..+++|++++..+++++++++++.|+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          281 IQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             EECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             eecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                                  1479999999999999999999988753

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.84  E-value=6.9e-20  Score=160.06  Aligned_cols=226  Identities=13%  Similarity=0.061  Sum_probs=157.5

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh-cCCEEEEeccccCcCCcCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~-~g~~li~De~~~~~~~~g~   91 (266)
                      +...+.+++.++.+|+++|++.+  .+++++|++++++|++|.+.    ++++|.++|++ +|+++|+||+|+.+.. ..
T Consensus       122 ~~~~g~~~~~v~~~d~~~l~~~i--~~~t~~v~l~~p~NptG~v~----~l~~i~~la~~~~~~~li~De~~~~~~~-~~  194 (404)
T 1e5e_A          122 LTKFGIQVDFINTAIPGEVKKHM--KPNTKIVYFETPANPTLKII----DMERVCKDAHSQEGVLVIADNTFCSPMI-TN  194 (404)
T ss_dssp             HHHTTCEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHTSTTCEEEEECTTTCTTT-CC
T ss_pred             HHHcCCEEEEECCCCHHHHHHhc--CCCCcEEEEECCCCCCCccc----CHHHHHHHHHhhcCCEEEEECCCchhhh-CC
Confidence            44567889999999999999999  45799999999999999886    69999999999 9999999999976532 12


Q ss_pred             ccccccCCCCcCeeeeccccc-CCchhh-hhheecHHhhh-ccCCCCCCC-CCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALS-GGLYPI-SAVLADDEVMG-TLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~-~g~~~~-g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                      ++   .++.+..+.++||+++ +| +|+ |++++++++++ .+....... ....+++.+.++..+++.+  +...++..
T Consensus       195 ~~---~~~~di~~~S~sK~~~~~g-~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~~~~~~  268 (404)
T 1e5e_A          195 PV---DFGVDVVVHSATKYINGHT-DVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMKAES  268 (404)
T ss_dssp             GG---GGTCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHHHHH
T ss_pred             cc---ccCCEEEEEcCccccCCCC-CCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH--HHHHHHHH
Confidence            22   2355555566999999 57 897 99999998877 666544433 4567888888887777543  22334444


Q ss_pred             HHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---C
Q psy6547         168 KMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---I  229 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~  229 (266)
                      ++.+.+.+.+++ ..      .+.+..         ..++.|.   |+.|.++.    ..++..+.|.+.||++..   +
T Consensus       269 ~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~---~~~~~~~~----~~~~~~~~l~~~~i~~~~~s~G  340 (404)
T 1e5e_A          269 ENAMKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGS---MITFILKS----GFEGAKKLLDNLKLITLAVSLG  340 (404)
T ss_dssp             HHHHHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCS---EEEEEETT----HHHHHHHHHHTCSSSEESSCCC
T ss_pred             HHHHHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCce---EEEEEeCC----CHHHHHHHHHhCCCceeccCCC
Confidence            555555555554 21      111111         0112366   88887754    234455566677885432   1


Q ss_pred             -------------------------C--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 -------------------------S--NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 -------------------------~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                                               +  .+++|++++.    |++++++++|+++++....
T Consensus       341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~  397 (404)
T 1e5e_A          341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALLR  397 (404)
T ss_dssp             SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHC
T ss_pred             CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHH
Confidence                                     1  4799999665    7899999999999887653

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.84  E-value=5.8e-20  Score=163.72  Aligned_cols=226  Identities=15%  Similarity=0.129  Sum_probs=160.8

Q ss_pred             CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ...+.+++.++.+     |+++|++++  .+++++|+++++ |++|.+   .+++++|+++|++||+++|+||+|... .
T Consensus       174 ~~~G~~vv~v~~~~~~~~d~~~L~~~i--~~~t~~v~~~~p-n~~G~~---~~~l~~i~~l~~~~g~~li~Dea~~~~-~  246 (474)
T 1wyu_B          174 SMAGYQVREIPSGPEGEVDLEALKREL--GPHVAALMLTNP-NTLGLF---ERRILEISRLCKEAGVQLYYDGANLNA-I  246 (474)
T ss_dssp             HHTTCEEEEECBCTTSSBCHHHHHHHC--STTEEEEEECSS-CTTSCC---CTTHHHHHHHHHHHTCEEEEEGGGGGG-T
T ss_pred             HHCCCEEEEecCCCCCCcCHHHHHHhh--CCCceEEEEECC-CCCccc---CCCHHHHHHHHHHcCCEEEEeCchhhh-h
Confidence            3346688888875     899999999  456899998875 467765   248999999999999999999999543 2


Q ss_pred             cCcccccccCCCCcCeee--ecccccC-----CchhhhhheecHHhhhccCCC-------------------CCCCCCCC
Q psy6547          89 TGKLLAIHYEDVRPDIVI--LGKALSG-----GLYPISAVLADDEVMGTLVPG-------------------THGSTYGG  142 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~--~sK~~~~-----g~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~~~  142 (266)
                      .|.. ....+  .+|+++  ++|+|++     | .++|++++++++++.+...                   ....+++.
T Consensus       247 ~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG-~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  322 (474)
T 1wyu_B          247 MGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGG-PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYG  322 (474)
T ss_dssp             TTTC-CHHHH--TCSEEECCTTTTTCCCCTTSC-CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTS
T ss_pred             ccCC-CcccC--CCcEEEEeCccccccCCCCCC-CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcC
Confidence            2221 12222  366766  4899873     3 4899999999888776520                   01133456


Q ss_pred             cHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCcccee--eEEEEeeCccchHHHHHH
Q psy6547         143 NPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSI--NTLILSVSAILEVYDVCI  217 (266)
Q Consensus       143 ~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~  217 (266)
                      +++++.++...++.+..+.+   .+++.++++++.+.|++ ++.....    +.+.   +  +++.++.  +.+..++++
T Consensus       323 ~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~g~~~~~----~~~~---~~~~~~~~~~--~~~~~~l~~  392 (474)
T 1wyu_B          323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPY----DGPS---MHEFVAQPPE--GFRALDLAK  392 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSS----CSSC---CSCEEEBCST--TCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcEecC----CCCc---ceEEEEEcCC--CCCHHHHHH
Confidence            77888888888876554444   77788899999999988 4322111    1122   2  4554432  456889999


Q ss_pred             HHHHCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         218 KMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       218 ~l~~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|.++||.+...     ..+++|++++..+|++++++++++|++++++
T Consensus       393 ~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          393 GLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             HHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            999999985311     2578999998888999999999999988754

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.83  E-value=5.7e-20  Score=157.61  Aligned_cols=226  Identities=12%  Similarity=0.018  Sum_probs=150.2

Q ss_pred             CCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC--CcC
Q psy6547          17 MPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--RTG   90 (266)
Q Consensus        17 ~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~--~~g   90 (266)
                      +.+++.++.+    |+++|+++   .+++++|++++++|++|...++.+.+++|+++|++||++||+|++|..+.  ..+
T Consensus       113 g~~~~~v~~~~~~~d~~~l~~~---~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~  189 (359)
T 3pj0_A          113 QITPLLLGTANQLLTIDDIKSL---REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQ  189 (359)
T ss_dssp             CCEEEECSCTTSCCCHHHHHTC---SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHT
T ss_pred             CceEEecCCcCCCcCHHHHHhc---cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhC
Confidence            4566666643    78888877   34689999988877775556999999999999999999999999984321  111


Q ss_pred             ccc-ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          91 KLL-AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        91 ~~~-~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      ... .+. .+.+.-+.++||+++++ .. |++++++++++.+...   .....+..+. .++++..+++..  .+..+++
T Consensus       190 ~~~~~~~-~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~--~~~~~~~  263 (359)
T 3pj0_A          190 KSAEEIC-ALFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIWKRRYGGDLISLYP-YILSADYYFEKR--IGKMAEY  263 (359)
T ss_dssp             CCHHHHH-TTCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHHHHHTTCCCSCCHH-HHHHHHHHHHHH--GGGHHHH
T ss_pred             CCHHHhh-ccCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHHHHHhCCCcchhHH-HHHHHHHHHHHH--HHHhHHH
Confidence            111 111 22233334699999866 33 7788899888776531   1222333333 334444556543  2345567


Q ss_pred             HHHHHHHHHHhhcccccCCCccc-EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCEEEEecc
Q psy6547         167 YKMGEIFRSELSSPANKSKASFK-LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNIIRLSPA  239 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~iR~~~~  239 (266)
                      .++++++.+.|++ +..  +... .+..+.   ++++.++.....+..++.+.|.++||.++++.      .+++|++..
T Consensus       264 ~~~~~~l~~~L~~-~~g--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~  337 (359)
T 3pj0_A          264 FEAAKGLAERFNS-CSG--VKTVPEVPVSN---MFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVG  337 (359)
T ss_dssp             HHHHHHHHHHHHT-STT--EEEESSSCSSS---EEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECC
T ss_pred             HHHHHHHHHHHhh-CCC--ceeeccCCcce---EEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEec
Confidence            7888888899887 421  2110 123455   78888765223457889999999999999862      357899754


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q psy6547         240 ---LNITEQELREGLDIIINT  257 (266)
Q Consensus       240 ---~~~t~~~i~~~~~~l~~~  257 (266)
                         ...+.+++++++++|.+.
T Consensus       338 ~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          338 DAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHhc
Confidence               346899999999999875

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.83  E-value=2.9e-20  Score=159.27  Aligned_cols=218  Identities=8%  Similarity=-0.004  Sum_probs=156.4

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCcCCcC
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTG   90 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~De~~~~~~~~g   90 (266)
                      +.+++.++.+     |+++|+  +  .+++++|++++++|++|.+.    ++++|.++|++| |+++|+|++|+...   
T Consensus       106 g~~~~~v~~~~~~~~d~~~l~--~--~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~p~~~li~D~a~~~~~---  174 (362)
T 3ffr_A          106 GREAYKEEAAFGKGFYPADIT--V--PADAEIICLTHNETSSGVSM----PVEDINTFRDKNKDALIFVDAVSSLPY---  174 (362)
T ss_dssp             TCEEEEEECCTTCCCCGGGCC--C--CTTCCEEEEESEETTTTEEC----CHHHHTTSGGGSTTSEEEEECTTTTTS---
T ss_pred             CCCeEEEecCCCCCCCHHHHh--c--cCCccEEEEEcCCCCcceeC----CHHHHHHHHHhCCCCEEEEecccccCC---
Confidence            5566666643     678887  4  55789999999999999886    699999999999 99999999995321   


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCC---------------------CCCCCCCcHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYGGNPLAC  147 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~  147 (266)
                      ......  .  .|+++  ++|+++++ ..+|++++++++.+.+....                     .....+.+...+
T Consensus       175 ~~~~~~--~--~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (362)
T 3ffr_A          175 PKFDWT--K--IDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNI  249 (362)
T ss_dssp             SCCCTT--S--CSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHH
T ss_pred             cccChh--H--CcEEEEecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHH
Confidence            111111  1  44444  77999944 44678888888766554211                     111455677777


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccc-ccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPA-NKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~-~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      .++..+++.+..   ++..++++++++++.+.|++ + +..... ......+.   ++++.++.    +..++++.|.++
T Consensus       250 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~l~~~  321 (362)
T 3ffr_A          250 FLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMT---TIVANTTM----LPGEINKILEPF  321 (362)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSS---EEEEEESS----CHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCc---eEEEecCC----CHHHHHHHHHHC
Confidence            777788876654   45777888889999999887 5 222221 10112344   78887765    678999999999


Q ss_pred             CceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       223 gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ||.+.++    ..+++|++++..++++++++++++|++++
T Consensus       322 gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          322 DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            9999864    46899999999999999999999998764

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.82  E-value=2.1e-20  Score=162.79  Aligned_cols=235  Identities=14%  Similarity=0.024  Sum_probs=153.2

Q ss_pred             cCcccccCCCCCCceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      +.....+...+.+++.++.+       |++++++.+++ .++++++++++++|++|.+ ++.+.+++|+++|++||+++|
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li  212 (401)
T 7aat_A          134 GNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD-PRQEQWKELASVVKKRNLLAY  212 (401)
T ss_dssp             TTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEE
Confidence            33333445567788888753       67888888865 2468899999999999987 899999999999999999999


Q ss_pred             EeccccCcCCcCc---cccc----ccCCCCcCeeeeccccc-CCchhhhhhee---cHH----hhhccCCCCCCCCCCCc
Q psy6547          79 ADEVQTGLGRTGK---LLAI----HYEDVRPDIVILGKALS-GGLYPISAVLA---DDE----VMGTLVPGTHGSTYGGN  143 (266)
Q Consensus        79 ~De~~~~~~~~g~---~~~~----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~----~~~~~~~~~~~~~~~~~  143 (266)
                      +||+|.++...+.   ....    ........+.++||.++ +| +|+||+++   +++    +.+.+.......+.+.+
T Consensus       213 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T 7aat_A          213 FDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPP  291 (401)
T ss_dssp             EEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             EccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccccc-CceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999988754432   1111    12223344566999999 88 99999875   444    33333322222333444


Q ss_pred             HHHHHHHHHHHHHH------h--hccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHH
Q psy6547         144 PLACKLAMTALDVI------L--EENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYD  214 (266)
Q Consensus       144 ~~~~~a~~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  214 (266)
                      ...+.++..+++.-      .  -++..++++++++++.+.|++ ++. ..+....+..|.   +.|+.+      +.+.
T Consensus       292 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~------~~~~  361 (401)
T 7aat_A          292 MNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGSSHNWQHITDQIGM---FCFTGL------KPEQ  361 (401)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHCCSS---EEECCC------CHHH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCceecCCcce---EEecCC------CHHH
Confidence            55555555445311      1  134667788888888888887 432 123321223444   455432      2344


Q ss_pred             HHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         215 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       215 ~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +...+.++||.+.++    +|++++.. +++++++++++|++++
T Consensus       362 ~~~ll~~~gi~v~~~----~Ris~~~~-~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          362 VERLTKEFSIYMTKD----GRISVAGV-ASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEeccCC----CeEEeccC-ChhhHHHHHHHHHHHh
Confidence            444446789999875    58987754 5555999999998875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.82  E-value=2e-19  Score=156.78  Aligned_cols=223  Identities=14%  Similarity=0.118  Sum_probs=155.5

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.+|++++++.+  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+.+ ..+...
T Consensus       126 ~~~g~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~  198 (398)
T 1gc0_A          126 GEFGVKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMA----DIAGVAKIARKHGATVVVDNTYCTP-YLQRPL  198 (398)
T ss_dssp             GGGTCEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHGGGTCEEEEECTTTHH-HHCCGG
T ss_pred             HHcCCEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCcccc----cHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence            3456788899999999999999  45799999999999999886    7999999999999999999999633 122221


Q ss_pred             ccccCCCCcCeeeeccccc-CCchhh-hhheecHHhhh-ccCCCCCC-CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALS-GGLYPI-SAVLADDEVMG-TLVPGTHG-STYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~-~g~~~~-g~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                         .++.++.+.+++|+++ +| .|+ |+++++++.++ .+...... .+.+.+++.+.++..+++.+  +...++..++
T Consensus       199 ---~~~~d~~~~S~sK~~~~~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~  272 (398)
T 1gc0_A          199 ---ELGADLVVHSATKYLSGHG-DITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NLRMDRHCAN  272 (398)
T ss_dssp             ---GGTCSEEEEETTTTTTCSS-SCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHH
T ss_pred             ---hhCceEEEECCccccCCCC-CCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--HHHHHHHHHH
Confidence               2355666667999999 45 777 88888887654 44433233 34567888888777777643  2344555666


Q ss_pred             HHHHHHHhhccccc------CCCc---------ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---C--
Q psy6547         170 GEIFRSELSSPANK------SKAS---------FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---I--  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~~------~~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~--  229 (266)
                      .+.+.+.|++ .+.      +.+.         ....+.|.   ++.|.++.    +.++..+.+.+.++.+..   +  
T Consensus       273 ~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~---~~~~~l~~----~~~~~~~~l~~~~i~~~~~s~G~~  344 (398)
T 1gc0_A          273 AQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGG---MIAFELKG----GIGAGRRFMNALQLFSRAVSLGDA  344 (398)
T ss_dssp             HHHHHHHHHT-CTTEEEEEEC----------------CCTT---EEEEEETT----HHHHHHHHHHHCSSSEECSCCSCS
T ss_pred             HHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCce---EEEEEECC----CHHHHHHHHHhCCCceeccCCCCc
Confidence            6667777665 221      1110         00123566   89998864    234566666777776543   1  


Q ss_pred             -------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 -------------------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 -------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                               ..+.+|++++...++++++.+.+.|+++
T Consensus       345 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          345 ESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             SCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence                                     1379999999999999998888888764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.82  E-value=1.3e-19  Score=157.44  Aligned_cols=223  Identities=12%  Similarity=0.018  Sum_probs=138.6

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |+++|++++  .+++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+ ++.. 
T Consensus       132 ~g~~~~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~~~~li~D~a~~-~~~~-  203 (400)
T 3vax_A          132 RGFEVDFLTPGPSGRISVEGVMERL--RPDTLLVSLMHVNNETGVIQ----PVAELAQQLRATPTYLHVDAAQG-YGKV-  203 (400)
T ss_dssp             TTCEEEEECCCTTCCCCHHHHHTTC--CTTEEEEECCSBCTTTCBBC----CHHHHHHHHTTSSCEEEEECTTT-TTTS-
T ss_pred             cCCeEEEEccCCCCCcCHHHHHHhc--CCCceEEEEECCCCCceeeC----cHHHHHHHHHhcCCEEEEEhhhh-cCCC-
Confidence            46678888865     899999999  45789999999999999886    68999999999999999999995 2211 


Q ss_pred             cccccccCCCCcCeee--ecccccCCchhhhhhe-ecHH-hh---hccCCCC-------CCCCCCCcHHHHHHHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVL-ADDE-VM---GTLVPGT-------HGSTYGGNPLACKLAMTALDV  156 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~-~~~~-~~---~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~  156 (266)
                       .....  .. +|+++  ++|.++ + .++|+++ ++++ +.   +.+....       .....+.+...+.++.++++.
T Consensus       204 -~~~~~--~~-~d~~~~s~~K~~g-~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  277 (400)
T 3vax_A          204 -PGDLT--TP-IDMISISGHKIGA-P-KGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI  277 (400)
T ss_dssp             -GGGGG--SC-CSEEEEETGGGTS-C-SSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH
T ss_pred             -CcChh--hc-CcEEEEeHHHhCC-C-CceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH
Confidence             11222  22 56665  669554 3 3477777 6651 11   1222221       123445677777777788877


Q ss_pred             Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----
Q psy6547         157 ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----  230 (266)
Q Consensus       157 ~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----  230 (266)
                      +..  +++.++++++++++.+.|+. .+...........+.   ++++.++.   .+..++++.|. +||.++++.    
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~L~-~gi~v~~g~~~~~  349 (400)
T 3vax_A          278 FEAEHAQWQVAAQDLRSRLLAGLAS-TSFQVNGDQDHVVPH---ILNLSFED---VDAEAFLVTLK-DLVAVATGSASTS  349 (400)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHTT-TTCEECSCTTSBCTT---EEEEECTT---CCHHHHHHHHH-HHHHHTTTTEEEE
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhCC-CCEEEeCCcccCCCC---EEEEEeCC---CCHHHHHHHHh-cCcEEEecccccC
Confidence            654  56788888888889888872 222111110112244   67776653   46788999999 999988742    


Q ss_pred             -------------------CCEEEEec-cCCCCHHHHHHHHHHHHHHHHH
Q psy6547         231 -------------------NNIIRLSP-ALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       231 -------------------~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                         .+++|+++ +...+++++++++++|++++++
T Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          350 ASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             CCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence                               48999999 8889999999999999988754

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.82  E-value=7.1e-20  Score=159.53  Aligned_cols=215  Identities=12%  Similarity=0.050  Sum_probs=152.6

Q ss_pred             CCHHHHHHHHhcCCCEEEEEE-ccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cCCcCcccccccCCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~-~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~~~g~~~~~~~~~~~~d  103 (266)
                      .|+++|++.+++. ++++|++ +|.++   ...    ++++|.++|++||+++|+||+|++ +...|.....  .. .+|
T Consensus       150 ~d~~~l~~~l~~~-~~~~v~~~~p~~~---~~~----~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~d  218 (407)
T 2dkj_A          150 IDLEEVRRLALEH-RPKVIVAGASAYP---RFW----DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP-YAH  218 (407)
T ss_dssp             CCHHHHHHHHHHH-CCSEEEECCSSCC---SCC----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT-TCS
T ss_pred             cCHHHHHHHHhhc-CCeEEEEeccccC---CCC----CHHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc-ccc
Confidence            4799999999532 4677887 44432   333    589999999999999999999965 4223322111  11 245


Q ss_pred             ee--eecccccCCchhhhhheec-HHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547         104 IV--ILGKALSGGLYPISAVLAD-DEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  176 (266)
Q Consensus       104 ~~--~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~  176 (266)
                      ++  ++||+++|  .++|+++++ +++.+.+... ..+.+.+.++..++++.++++.+..   +++.++++++++++.+.
T Consensus       219 i~~~s~sK~l~g--~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  296 (407)
T 2dkj_A          219 VVTSTTHKTLRG--PRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEE  296 (407)
T ss_dssp             EEEEESSGGGCC--CSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCC--CCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            55  69998874  568999998 7887766532 2334445566666677777877543   56788888999999999


Q ss_pred             hhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------CCCEEEEeccC----CC
Q psy6547         177 LSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NI  242 (266)
Q Consensus       177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~iR~~~~~----~~  242 (266)
                      |++ ++...+.  .++.|.   ++++.++.. +.+..++.+.|.++||.+.++          ..+++|++++.    ..
T Consensus       297 L~~-~g~~~~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  369 (407)
T 2dkj_A          297 LAR-RGYRIVT--GGTDNH---LFLVDLRPK-GLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF  369 (407)
T ss_dssp             HHH-TTCEEGG--GSCSSS---EEEEECGGG-TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred             HHh-CCceeec--CCCCce---EEEEECccc-CCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCC
Confidence            988 4321111  123566   899888641 236788999999999999864          24689999765    37


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINT  260 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~  260 (266)
                      +++++++++++|++++++
T Consensus       370 ~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          370 TPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999999877

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.82  E-value=2.3e-20  Score=165.60  Aligned_cols=227  Identities=11%  Similarity=0.123  Sum_probs=148.9

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ...+.+++.++.+|+++|++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|... ....  
T Consensus       193 ~~~G~~v~~v~~~d~~~l~~~i--~~~tk~v~l~~p~NptG~v~----~l~~i~~la~~~gi~livDea~~~g-~~~~--  263 (464)
T 1ibj_A          193 PRSGVVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPRQQIS----DIRKISEMAHAQGALVLVDNSIMSP-VLSR--  263 (464)
T ss_dssp             GGGTCEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTTCCCC----CHHHHHHHHHTTTCEEEEECTTTCT-TTCC--
T ss_pred             HHcCCEEEEeCCCCHHHHHHHh--ccCceEEEEeCCCCCCCEee----cHHHHHHHHHHcCCEEEEECCCccc-ccCC--
Confidence            4467889999999999999999  45799999999999999986    7999999999999999999999531 1111  


Q ss_pred             ccccCCCCcCeeeecccccC--CchhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYK  168 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~  168 (266)
                      ... ++.+..+.++||++++  | +++|++++++ ++.+.+.........+.+++.+.++..+++.+..  +...++...
T Consensus       264 ~~~-~~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~  341 (464)
T 1ibj_A          264 PLE-LGADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARK  341 (464)
T ss_dssp             GGG-TTCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hhh-cCCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence            122 3444444469999985  7 7899999984 6766665322222344577777777776653211  112223333


Q ss_pred             HHHHHHHHh--hcc----ccc-CCCc---ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547         169 MGEIFRSEL--SSP----ANK-SKAS---FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--------  230 (266)
Q Consensus       169 ~~~~l~~~l--~~~----~~~-~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------  230 (266)
                      ..+++.+.-  ++.    +.. +.+.   ....+.|.   +++|.+..  ......+++.|...||.++++.        
T Consensus       342 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~---~~~~~l~~--~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p  416 (464)
T 1ibj_A          342 IAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS---VFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISMP  416 (464)
T ss_dssp             HHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCS---EEEEECSC--HHHHHHHHHHCSSSEECSCCCSSSCEEECT
T ss_pred             HHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCce---EEEEEECC--HHHHHHHHHhcCcceEeecCCCCceeeecc
Confidence            333333210  010    110 0110   00123466   89999843  2234568888877777765442        


Q ss_pred             -------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         231 -------------------NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       231 -------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                         .+++|++++.    |++++++++|++++++
T Consensus       417 ~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          417 CFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             TTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             cccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence                               4689999765    7899999999998864

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.81  E-value=1e-19  Score=159.16  Aligned_cols=241  Identities=11%  Similarity=0.024  Sum_probs=155.0

Q ss_pred             CCcCcccccCCCCCC-ceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           5 TDPTSYNEFGPHMPG-YNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~-v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      +||.....|.-.+.+ |...++.       |.+.+.+.+++ .++++++++++.+|++|.+ ++.+.+++|.++|+++++
T Consensus       146 ~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~-~~~~~~~~i~~~~~~~~~  224 (420)
T 4h51_A          146 TWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVD-PSQEQWNEIASLMLAKHH  224 (420)
T ss_dssp             CCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTC
T ss_pred             CchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCc
Confidence            344444445445554 3333332       56777777754 3467888888899999987 999999999999999999


Q ss_pred             EEEEeccccCcCCcCcc---ccc----ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccC-------CCCCCCCC
Q psy6547          76 LFIADEVQTGLGRTGKL---LAI----HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLV-------PGTHGSTY  140 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~---~~~----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~-------~~~~~~~~  140 (266)
                      ++|+||+|.+|...+..   +..    +.......+.+|||.++ .| +|+||+++..+..+...       ........
T Consensus       225 ~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s  303 (420)
T 4h51_A          225 QVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYT  303 (420)
T ss_dssp             EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTS
T ss_pred             eEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccC
Confidence            99999999988543321   111    11112334456999999 88 99999887543322211       11123333


Q ss_pred             CCcHHHHHHHHHHHHH------Hhh--ccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccch
Q psy6547         141 GGNPLACKLAMTALDV------ILE--ENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILE  211 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~  211 (266)
                      .++..++.++...+..      ++.  +.+.++++++++.+.+.|++ ++.. .+..-....|+   |.++-+      +
T Consensus       304 ~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~-~g~~~~~~~i~~q~Gm---F~~~gl------s  373 (420)
T 4h51_A          304 CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR-LQTPGSWEHVINQIGM---FSFLGL------S  373 (420)
T ss_dssp             SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHHHHCCSS---EEECCC------C
T ss_pred             cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCeecCCCce---EEecCc------C
Confidence            4455566666555542      111  34677788888888888887 5432 23221334576   655322      2


Q ss_pred             HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      . +.++.|+++||++.+++    ||+.. +.++++|++++++|.+++++..+
T Consensus       374 ~-e~v~~L~e~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          374 K-AQCEYCQNHNIFITVSG----RANMA-GLTHETALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             H-HHHHHHHHTTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC----
T ss_pred             H-HHHHHHHhCCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHHHhhc
Confidence            2 34678899999998864    88854 45899999999999999987654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.6e-20  Score=165.90  Aligned_cols=235  Identities=9%  Similarity=0.021  Sum_probs=159.0

Q ss_pred             cCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          13 FGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        13 ~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ...++.+++.++.+      |+++|++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+++
T Consensus       175 ~~~~G~~~~~v~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~p~nptG~~~----~l~~i~~la~~~g~~livD~a~~~~  248 (497)
T 3mc6_A          175 AYYFGMKLRHVELDPTTYQVDLGKVKKFI--NKNTVLLVGSAPNFPHGIAD----DIEGLGKIAQKYKLPLHVDSCLGSF  248 (497)
T ss_dssp             HHHSCCEEEEECBCTTTCSBCTTTTGGGC--CSSEEEEEEETTCTTTCCCC----SCTTTTTHHHHTTCCEEEETTTTHH
T ss_pred             HHHcCCeEEEEecCcccCcCCHHHHHHHH--hhCCEEEEEECCCCCCCcCC----CHHHHHHHHHHhCCEEEEECcchhh
Confidence            33456677887754      488999998  44689999999999999885    7889999999999999999999754


Q ss_pred             CCc-------Cc--ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC----CCCC-----CC--CCcHHH
Q psy6547          87 GRT-------GK--LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGS-----TY--GGNPLA  146 (266)
Q Consensus        87 ~~~-------g~--~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~~~-----~~--~~~~~~  146 (266)
                      ...       |.  .+.....+++....+++|++.+| .++|+++++.+........    ....     ++  +.+...
T Consensus       249 ~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  327 (497)
T 3mc6_A          249 IVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAI  327 (497)
T ss_dssp             HHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHH
T ss_pred             hhhhhhhhcccCCccccccCCCCcEEEECchhhcCCC-CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchh
Confidence            211       11  13333445444444467998888 8899998877655443211    1111     11  112223


Q ss_pred             HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         147 CKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       147 ~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .++..++++.++.   +++.++..++++++++.|++.+.  .+.......+.   ++.|...   +.+..++.+.|.++|
T Consensus       328 ~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--g~~~~~~~~~~---~v~~~~~---~~~~~~l~~~L~~~G  399 (497)
T 3mc6_A          328 VVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP--DLDIMGNPRYS---VISFSSK---TLNIHELSDRLSKKG  399 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCEECSCCCSS---EEEEECT---TTTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEecCCCee---EEEEeCC---CCCHHHHHHHHHhCC
Confidence            4445555555544   34667778888889888887211  12110113344   6666543   346889999999999


Q ss_pred             ceeccCC-CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         224 LVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       224 i~~~~~~-~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      |.+.... ...+|++++ .++++++++++++|++++++...
T Consensus       400 i~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~  439 (497)
T 3mc6_A          400 WHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKS  439 (497)
T ss_dssp             CBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred             EEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9987653 467899988 77999999999999999987643

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.81  E-value=1.5e-19  Score=155.03  Aligned_cols=229  Identities=13%  Similarity=0.006  Sum_probs=148.0

Q ss_pred             CCCceeecC----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcC
Q psy6547          17 MPGYNIIPY----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTG   90 (266)
Q Consensus        17 ~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g   90 (266)
                      +.+++.++.    .|+++|+++.    +++++++++++|++|+.+++.+++++|+++|++||++||+||+|..  ....|
T Consensus       112 g~~~~~v~~~~~~~d~~~l~~~~----~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~  187 (357)
T 3lws_A          112 PIETILVGAADRLMTLDEIKALP----DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE  187 (357)
T ss_dssp             SCEEEECSCTTSCCCHHHHHTCC----SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT
T ss_pred             CcEEEEecCCCCCcCHHHHhcCc----CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC
Confidence            344555553    3788888763    3788888888888744559999999999999999999999999841  11112


Q ss_pred             cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                      ........+.+.-+.++||+++++ . .|++++++++++.+....  ...........++++..+++... + ..++..+
T Consensus       188 ~~~~~~~~~~d~~~~s~sK~~~~~-~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~  263 (357)
T 3lws_A          188 KTAAEIAGLFDSIYISFYKGLGGI-A-GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK-D-RMGQYYE  263 (357)
T ss_dssp             CCHHHHHTTSSEEEEESSSTTCCS-S-CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT-T-CHHHHHH
T ss_pred             CChHHHHhcCCEEEEeccccCCCC-c-eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-H-HHHHHHH
Confidence            111100112222345799999644 2 388899998887765321  22222222334444556666532 2 2345677


Q ss_pred             HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEecc---C
Q psy6547         169 MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPA---L  240 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~---~  240 (266)
                      +++++.+.|++ +....+.. .+..+.   ++|+.++.....+..++.+.|.++||.++++.     ..++|++..   .
T Consensus       264 ~~~~l~~~L~~-~~g~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~  338 (357)
T 3lws_A          264 QAKQLAEQFNA-LPGVHTTP-EVPVSN---MFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYG  338 (357)
T ss_dssp             HHHHHHHHHHT-STTEEEES-SSCSSS---EEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGG
T ss_pred             HHHHHHHHHHh-CCCCeecc-CCCcce---EEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhh
Confidence            78888888887 42211100 123456   89999876211346789999999999998762     248999865   3


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTI  258 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~  258 (266)
                      ..+++++++++++|.+++
T Consensus       339 ~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          339 ELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHHhc
Confidence            468999999999998764

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.81  E-value=1.3e-19  Score=157.82  Aligned_cols=218  Identities=14%  Similarity=0.109  Sum_probs=151.6

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-CcCe
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDI  104 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~~d~  104 (266)
                      .|+++|++.+++. ++++|++++.+  .|...    ++++|+++|++||+++|+||+|+ ++..+....  ...+ .+|+
T Consensus       150 ~d~~~l~~~i~~~-~~~~v~~~~~~--~~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di  219 (405)
T 2vi8_A          150 IDYDDVREKARLH-RPKLIVAAAAA--YPRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHF  219 (405)
T ss_dssp             BCHHHHHHHHHHH-CCSEEEECCSS--CCSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSE
T ss_pred             cCHHHHHHHHHhc-CCeEEEEeCCC--CCccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCE
Confidence            3899999999542 46788876533  23332    68999999999999999999996 322221111  1111 3566


Q ss_pred             e--eecccccCCchhhhhheecHHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhh
Q psy6547         105 V--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       105 ~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~  178 (266)
                      +  ++||+++|+ .. |++++++++.+.+........+ +.++..++++.++++.+..   +++.++++++++++.+.|+
T Consensus       220 ~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  297 (405)
T 2vi8_A          220 VTTTTHKTLRGP-RG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQ  297 (405)
T ss_dssp             EEEESSSTTCCC-SC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCC-CC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5  699999865 44 9999998887666532222223 3356666666777876554   5678889999999999998


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------CCCEEEEeccC----CCCH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NITE  244 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~iR~~~~~----~~t~  244 (266)
                      + ++.....  ..+.+.   ++++.++.. +.+..++.+.|.++||.++++          ..+++|++++.    .+++
T Consensus       298 ~-~g~~~~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~  370 (405)
T 2vi8_A          298 N-EGFTLVS--GGTDNH---LLLVDLRPQ-QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGL  370 (405)
T ss_dssp             H-TTCEEGG--GSCSSS---EEEEECGGG-TCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCH
T ss_pred             h-CCCeEec--CCCCce---EEEEEccCC-CCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCH
Confidence            8 4321111  113456   888888641 235788999999999999864          24689999886    5789


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy6547         245 QELREGLDIIINTINTMA  262 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~~~  262 (266)
                      +++++++++|++++++..
T Consensus       371 ~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          371 EEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             HHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999987653

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.81  E-value=1.5e-19  Score=154.57  Aligned_cols=227  Identities=15%  Similarity=0.127  Sum_probs=146.7

Q ss_pred             CCCCCceeecCC----CHHHHHHHHhcCC-----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          15 PHMPGYNIIPYN----DVDALEAKLKSNP-----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        15 ~~~~~v~~~~~~----d~~~l~~~l~~~~-----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ..+.+++.++.+    |+++|++.+++++     ++++|+++++ +++|.+ ++.+++++|+++|++||+++|+||+|.+
T Consensus       111 ~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~  188 (359)
T 1svv_A          111 ATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLA  188 (359)
T ss_dssp             HTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHH
T ss_pred             cCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCcee-cCHHHHHHHHHHHHHhCCEEEEEccchh
Confidence            346688888876    4999999996541     4889988877 567776 7889999999999999999999999955


Q ss_pred             c--CCcCcccccccCC--CCcCeee--ecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHH
Q psy6547          86 L--GRTGKLLAIHYED--VRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        86 ~--~~~g~~~~~~~~~--~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      |  +..+..  ....+  ..+|+.+  .+|. ++. ...|++++++++.+.+....  ...++..+.....+...+++..
T Consensus       189 ~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  264 (359)
T 1svv_A          189 SALSSPVND--LTLADIARLTDMFYIGATKA-GGM-FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDN  264 (359)
T ss_dssp             HHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCS-SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT
T ss_pred             hhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCC-CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhh
Confidence            4  332221  11101  1345555  5675 333 45678888888776654321  2222222222222222223211


Q ss_pred             hhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceecc---CCCCE
Q psy6547         158 LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKP---ISNNI  233 (266)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~---~~~~~  233 (266)
                      .-+++.++++++++++.+.| + ..  .+....+..+.   ++++.++       .+++++|.++ ||.+.+   ...++
T Consensus       265 ~~~~~~~~~~~~~~~l~~~L-~-~~--~~~~~~~~~~~---~~~~~~~-------~~~~~~l~~~~gi~v~~~~~~~~~~  330 (359)
T 1svv_A          265 LFFELGAHSNKMAAILKAGL-E-AC--GIRLAWPSASN---QLFPILE-------NTMIAELNNDFDMYTVEPLKDGTCI  330 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-H-HT--TCCBSSCCSSS---EECBEEE-------HHHHHHHTTTEECEEEEEETTTEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHh-c-cC--CeEEccCCccc---eEEEEcC-------HHHHHHHHHhcCEEEEecccCCCce
Confidence            11346778888888888888 4 22  22210123345   6666553       3688999988 999854   24579


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       234 iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +|++++..++++++++++++|+++++++
T Consensus       331 iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          331 MRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             EEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            9999988899999999999999987653

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.81  E-value=2.7e-19  Score=153.02  Aligned_cols=222  Identities=10%  Similarity=0.045  Sum_probs=144.7

Q ss_pred             CCCceeecCC----CHHHHHH-HHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          17 MPGYNIIPYN----DVDALEA-KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        17 ~~~v~~~~~~----d~~~l~~-~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      +.+++.++.+    |+++|++ ++++.     +++++|++++++ ++|.+ ++.+++++|+++|++||+++|+||+|..+
T Consensus       108 g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~  185 (356)
T 1v72_A          108 GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFAN  185 (356)
T ss_dssp             SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred             CcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHh
Confidence            5567777654    7999999 88542     268999998865 47765 89999999999999999999999999543


Q ss_pred             C--CcCcccccccCC--CCcCee--eecccccCCchhhh--hheecHHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          87 G--RTGKLLAIHYED--VRPDIV--ILGKALSGGLYPIS--AVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        87 ~--~~g~~~~~~~~~--~~~d~~--~~sK~~~~g~~~~g--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      .  ..|..  ....+  ...|++  ++||+   | .|.|  ++++++++.+.+... .+.......  ...++..+++.+
T Consensus       186 ~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  257 (356)
T 1v72_A          186 ALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYL  257 (356)
T ss_dssp             HHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHT
T ss_pred             HhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHH
Confidence            1  11211  11111  123443  48898   3 3566  777788877655421 111222111  112222334444


Q ss_pred             hhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CC
Q psy6547         158 LEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NN  232 (266)
Q Consensus       158 ~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~  232 (266)
                      +.+   ++.++++++++++++.|++ +.  .+....+..+.   ++|+.++       .+++++|.++||.+.++.  .+
T Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~~~---~~~~~~~-------~~~~~~l~~~gi~v~~g~~~~~  324 (356)
T 1v72_A          258 TDDLWLRNARKANAAAQRLAQGLEG-LG--GVEVLGGTEAN---ILFCRLD-------SAMIDALLKAGFGFYHDRWGPN  324 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHTT-CT--TEEEESCCCSS---EEEEEEC-------HHHHHHHHHTTCBCBCSSSSTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhh-CC--CcEEccCCCcc---EEEEEcC-------HHHHHHHHhcCeEEeccccCCC
Confidence            332   3556677788888888876 32  12110123345   7777663       268999999999998653  68


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++|++++..++++++++++++|++++++.
T Consensus       325 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          325 VVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999887653

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.80  E-value=3.8e-19  Score=154.79  Aligned_cols=222  Identities=14%  Similarity=0.139  Sum_probs=153.0

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|+++|++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+.. ....  
T Consensus       127 ~~~g~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~la~~~g~~li~D~~~~~~-~~~~--  197 (392)
T 3qhx_A          127 TGWNVEYTPVALADLDAVRAAI--RPTTRLIWVETPTNPLLSIA----DIAGIAQLGADSSAKVLVDNTFASP-ALQQ--  197 (392)
T ss_dssp             GGGTCEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHTCEEEEECTTTCT-TTCC--
T ss_pred             HhcCcEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCcEEe----cHHHHHHHHHHcCCEEEEECCCccc-ccCC--
Confidence            5668899999999999999999  45799999999999999886    6999999999999999999999532 1111  


Q ss_pred             ccccCCCCcCeee--ecccccC-Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVI--LGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        94 ~~~~~~~~~d~~~--~sK~~~~-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                         ..+..+|+++  ++|.+++ |..++|+++++ +++.+.+...........+++.+.++...++.+.  ...++..++
T Consensus       198 ---~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~~~~~~~~~  272 (392)
T 3qhx_A          198 ---PLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLV--LRMQRHSEN  272 (392)
T ss_dssp             ---GGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred             ---hHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence               1223455555  9999995 32578999887 5777666544444556678888877776665432  234555666


Q ss_pred             HHHHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----
Q psy6547         170 GEIFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----  229 (266)
                      .+.+.+.|++ ...      +.+..         ..++.|.   +++|.++.. ....+.|...|...++.+..+     
T Consensus       273 ~~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~---~~~~~l~~~-~~~~~~~~~~l~~~~~~~s~G~~~sl  347 (392)
T 3qhx_A          273 AAAVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGG---MVSVRMRAG-RTAAEQLCAKTNIFILAESLGSVESL  347 (392)
T ss_dssp             HHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEETTC-HHHHHHHHHHCSSSEECSCCCCSSCE
T ss_pred             HHHHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCce---EEEEEeCCc-HHHHHHHHHhCCCceECCCCCCCCce
Confidence            6677777765 221      11111         0134577   999999751 235677887777666554422     


Q ss_pred             -------------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         230 -------------------SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       230 -------------------~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                                         ..+.||+|++...+++.++.+.+.|
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          348 IEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             EECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             eeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence                               2467999977776666555555544

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.79  E-value=4.3e-18  Score=149.56  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=155.6

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC----------CEEEE
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN----------VLFIA   79 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g----------~~li~   79 (266)
                      .+.+++.++.+      |+++|++.+  .+++++|++++++|++|.+.    ++++|.++|+++|          +++|+
T Consensus       147 ~g~~v~~v~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~~~~~~~~~~liv  220 (432)
T 3a9z_A          147 QVAEVTFVPVSKVNGQVEVEDILAAV--RPTTCLVTIMLANNETGVIM----PISEISRRIKALNQIRAASGLPRVLVHT  220 (432)
T ss_dssp             TSCEEEEECCCTTTSSCCHHHHHHTC--CTTEEEEECCSBCTTTCBBC----CHHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             cCcEEEEEecCcccCCcCHHHHHHhc--cCCceEEEEECcccCccccc----CHHHHHHHHHhcCcccccccCCceEEEE
Confidence            35677888753      789999998  45789999999999999986    6789999999999          99999


Q ss_pred             eccccCcCCcCcccccccCCCCcCeee--ecccccCCchhhhhheecHHh-hhccCCCC-------CCCCCCCcHHHHHH
Q psy6547          80 DEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEV-MGTLVPGT-------HGSTYGGNPLACKL  149 (266)
Q Consensus        80 De~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~a  149 (266)
                      ||+|. ++..  .+.....  .+|+++  ++|++|   .++|+++++++. .+.+....       ....++.++..+++
T Consensus       221 Dea~~-~~~~--~~~~~~~--~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  292 (432)
T 3a9z_A          221 DAAQA-LGKR--RVDVEDL--GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAG  292 (432)
T ss_dssp             ECTTT-TTTS--CCCHHHH--CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHH
T ss_pred             Echhh-hCCc--ccChhhc--CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHH
Confidence            99994 3322  1222222  345544  699873   469999998765 33343321       22345677888888


Q ss_pred             HHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCC-cc---cEEecCccceeeEEEEeeCccchHHHHHHHHH---
Q psy6547         150 AMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKA-SF---KLSSGGLKKSINTLILSVSAILEVYDVCIKMK---  220 (266)
Q Consensus       150 ~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~---  220 (266)
                      +.++++.+..  +++.++++++++++.+.|++..+.... ..   .....+.   +++|.++.. +.+..++.+.+.   
T Consensus       293 ~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~i~  368 (432)
T 3a9z_A          293 LGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPN---TCNFSIQGS-QLRGYMVLAQCQTLL  368 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTT---EEEEEECST-TCCHHHHHHHCSSEE
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCC---EEEEEeCCC-CCcHHHHHHHhcCeE
Confidence            8888887654  567888889999999998872121110 00   0123455   777877652 123555665542   


Q ss_pred             -HCCceecc-------------C-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         221 -DAGLVTKP-------------I-----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       221 -~~gi~~~~-------------~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       +.|+.+.+             +     ..+++|++++..+|++++++++++|+++++++.
T Consensus       369 ~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          369 ASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             CBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence             12332222             1     137999999988899999999999999987754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.79  E-value=8.3e-19  Score=152.81  Aligned_cols=221  Identities=12%  Similarity=0.078  Sum_probs=150.4

Q ss_pred             CCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC-C
Q psy6547          16 HMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-R   88 (266)
Q Consensus        16 ~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~-~   88 (266)
                      .+.+++.++.      .|+++|++.++  +++++|+++   +++|.+.    ++++|.++|+++|+++|+||+|+.+. .
T Consensus       123 ~g~~~~~~~~~~~~~~~d~~~l~~~i~--~~~~~v~~~---n~tG~~~----~l~~i~~l~~~~~~~li~Dea~~~g~~~  193 (399)
T 2oga_A          123 TGATPVPVEPHEDHPTLDPLLVEKAIT--PRTRALLPV---HLYGHPA----DMDALRELADRHGLHIVEDAAQAHGARY  193 (399)
T ss_dssp             TTCEEEEECBCSSSSSBCHHHHHHHCC--TTEEEECCB---CGGGCCC----CHHHHHHHHHHHTCEECEECTTCTTCEE
T ss_pred             CCCEEEEEecCCCCCCcCHHHHHHhcC--CCCeEEEEe---CCcCCcc----CHHHHHHHHHHcCCEEEEECcccccCcc
Confidence            4556666653      37999999993  468888754   4567664    69999999999999999999996331 1


Q ss_pred             cCcccccccCCCCcCeeee----cccccC-Cchhhhhheec-HHhhhccCCCCC------------CCCCCCcHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVIL----GKALSG-GLYPISAVLAD-DEVMGTLVPGTH------------GSTYGGNPLACKLA  150 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~----sK~~~~-g~~~~g~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~a~  150 (266)
                      .+.     ..+..+|++++    ||++++ |  ++|+++++ +++.+.+.....            ..++..+++.++++
T Consensus       194 ~~~-----~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~  266 (399)
T 2oga_A          194 RGR-----RIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVL  266 (399)
T ss_dssp             TTE-----ETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHH
T ss_pred             CCe-----ecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHH
Confidence            121     12323577775    599986 5  68888875 677654432101            22345678888888


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccce-eeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         151 MTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      .++++.++  .+.++.+++.+++++.|++ +....+.. .+..+.  + ++.+.+..   .+..++.+.|.++||.+++.
T Consensus       267 ~~~l~~~~--~~~~~~~~~~~~l~~~L~~-~~g~~~~~-~~~~~~--~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~~  337 (399)
T 2oga_A          267 RIRLAHLD--SWNGRRSALAAEYLSGLAG-LPGIGLPV-TAPDTD--PVWHLFTVRT---ERRDELRSHLDARGIDTLTH  337 (399)
T ss_dssp             HHHHHTHH--HHHHHHHHHHHHHHHHTTT-CTTCBCCC-CCTTEE--CCCSSEEEEC---SSHHHHHHHHHHTTBCCBCS
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHhcc-CCCccccC-CCCCCc--ceeEEEEEEC---CCHHHHHHHHHHCCCceecC
Confidence            88887653  3567777888888888887 43211111 111122  0 22244332   25788999999999999864


Q ss_pred             CC---------------------------CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 SN---------------------------NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ~~---------------------------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..                           +++|++++..+|+++++++++.|+++++++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          338 YPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             CSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            31                           579999999999999999999999998764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.79  E-value=5.6e-18  Score=148.26  Aligned_cols=219  Identities=16%  Similarity=0.121  Sum_probs=148.0

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ....+.+++.++.+ +++|++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+.++.....
T Consensus       116 ~~~~g~~~~~~~~~-~~~l~~~i--~~~~~~v~~~~~~n~~G~~~----~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~  188 (412)
T 2cb1_A          116 LSLMGVTVRYVDPE-PEAVREAL--SAKTRAVFVETVANPALLVP----DLEALATLAEEAGVALVVDNTFGAAGALCRP  188 (412)
T ss_dssp             TTTTTCEEEEECSS-HHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHTCEEEEECGGGTTTTSCCG
T ss_pred             HHHcCCEEEEECCC-HHHHHHHh--ccCCeEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEECCCccccccCCc
Confidence            34567788888874 99999999  45799999999999999986    7999999999999999999999755211121


Q ss_pred             cccccCCCCcCeee--eccccc-CCchhhhhheecH-H---------------------------hhhccCCCC-CCCCC
Q psy6547          93 LAIHYEDVRPDIVI--LGKALS-GGLYPISAVLADD-E---------------------------VMGTLVPGT-HGSTY  140 (266)
Q Consensus        93 ~~~~~~~~~~d~~~--~sK~~~-~g~~~~g~~~~~~-~---------------------------~~~~~~~~~-~~~~~  140 (266)
                        .   ...+|+++  ++|+++ +| .|+|+++..+ +                           +.+.++... .....
T Consensus       189 --~---~~~~di~~~S~~K~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~  262 (412)
T 2cb1_A          189 --L---AWGAHVVVESLTKWASGHG-SVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM  262 (412)
T ss_dssp             --G---GGTCSEEEEETTTTTTCSS-CCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC
T ss_pred             --c---ccCCeEEEECCcccccCCC-CcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC
Confidence              1   22355554  999997 46 7888877543 2                           222222111 11122


Q ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCC-C--cccE------------EecCccceeeEEEEe
Q psy6547         141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK-A--SFKL------------SSGGLKKSINTLILS  205 (266)
Q Consensus       141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~--~~~~------------~~~g~~~~~~~~~~~  205 (266)
                      ..++..+..+...++.+  +...++..++.+++.+.|.+ ..... +  +...            .+.|.   ++.|.+ 
T Consensus       263 ~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~---iv~~~~-  335 (412)
T 2cb1_A          263 ALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGP---ILTLDL-  335 (412)
T ss_dssp             CCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCS---EEEEEC-
T ss_pred             CCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCce---EEEEEe-
Confidence            44666666655555443  23445566788888888877 32211 1  1000            23455   888888 


Q ss_pred             eCccchHHHHHHHHHHCCceeccCC------------------------------CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         206 VSAILEVYDVCIKMKDAGLVTKPIS------------------------------NNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       206 ~~~~~~~~~~~~~l~~~gi~~~~~~------------------------------~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                      .    +.+++.+.|.+.||.+ .++                              .+.+|+|++..+++++++.+.+.|+
T Consensus       336 ~----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~  410 (412)
T 2cb1_A          336 G----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE  410 (412)
T ss_dssp             S----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence            4    4566777787889886 331                              5799999999999999999988886


Q ss_pred             H
Q psy6547         256 N  256 (266)
Q Consensus       256 ~  256 (266)
                      +
T Consensus       411 ~  411 (412)
T 2cb1_A          411 A  411 (412)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.78  E-value=1e-18  Score=151.52  Aligned_cols=225  Identities=14%  Similarity=0.146  Sum_probs=151.5

Q ss_pred             CCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cC
Q psy6547          15 PHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LG   87 (266)
Q Consensus        15 ~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~   87 (266)
                      ..+.+++.++.      .|+++|++.++  +++++|++++   ++|.+.    ++++|.++|+++|+++|+||+|+. +.
T Consensus        98 ~~g~~~~~v~~~~~~~~~d~~~l~~~l~--~~~~~v~~~~---~~G~~~----~~~~i~~l~~~~~~~li~D~a~~~g~~  168 (393)
T 1mdo_A           98 LLGANPVMVDVDRDTLMVTPEHIEAAIT--PQTKAIIPVH---YAGAPA----DLDAIYALGERYGIPVIEDAAHATGTS  168 (393)
T ss_dssp             HTTCEEEEECBCTTTCCBCHHHHHHHCC--TTEEEECCBC---GGGCCC----CHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred             HCCCEEEEEeccCCcCCCCHHHHHHhcC--CCceEEEEeC---CCCCcC----CHHHHHHHHHHcCCeEEEECccccCCe
Confidence            34566777763      37999999994  4688888775   355554    799999999999999999999963 32


Q ss_pred             CcCcccccccCCCCcCeeeec----ccccCCchhhhhheec-HHhhhccCCCCC------------------------CC
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLAD-DEVMGTLVPGTH------------------------GS  138 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~-~~~~~~~~~~~~------------------------~~  138 (266)
                      ..+..     .+. .|++++|    |++++|  ++|+++.+ +++.+.+.....                        +.
T Consensus       169 ~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  240 (393)
T 1mdo_A          169 YKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGY  240 (393)
T ss_dssp             ETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCC
T ss_pred             ECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCc
Confidence            22221     222 6676655    888765  68898886 676655432111                        01


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCC--Cc-ccEEecCccceeeEEEEeeC-ccchHHH
Q psy6547         139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK--AS-FKLSSGGLKKSINTLILSVS-AILEVYD  214 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~  214 (266)
                      .+..+++.++++...++.+  ++..++.+++.+++++.|.+ ++...  .+ ....+.+.   ++++.++.. .+.+..+
T Consensus       241 ~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~  314 (393)
T 1mdo_A          241 KYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWH---LFIIRVDEARCGITRDA  314 (393)
T ss_dssp             BCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCS---CEEEECCHHHHSSCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc-CCcccccCCCCCCCceeE---EEEEEecccccccCHHH
Confidence            1234666666666655543  34667777788888888887 44111  11 01234455   788888630 0236788


Q ss_pred             HHHHHHHCCceeccCC-------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         215 VCIKMKDAGLVTKPIS-------------------------NNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       215 ~~~~l~~~gi~~~~~~-------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +.+.|.++||.++++.                         .+.+|++++..+|++++++++++|+++++...
T Consensus       315 l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  387 (393)
T 1mdo_A          315 LMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS  387 (393)
T ss_dssp             HHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            9999999999988642                         23799999888999999999999999877654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.78  E-value=1e-18  Score=152.64  Aligned_cols=224  Identities=15%  Similarity=0.132  Sum_probs=146.4

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC-CEEEEeccccCcCCcCcc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g-~~li~De~~~~~~~~g~~   92 (266)
                      ...+.+++.++.+|++++++.+  .+++++|++++++|++|.+.    ++++|.++|+++| +++|+||+|+.+. .+.+
T Consensus       127 ~~~G~~v~~v~~~d~~~l~~~i--~~~t~~v~~~~p~nptG~~~----~l~~i~~la~~~g~~~livD~~~~~~~-~~~~  199 (403)
T 3cog_A          127 SEFGLKISFVDCSKIKLLEAAI--TPETKLVWIETPTNPTQKVI----DIEGCAHIVHKHGDIILVVDNTFMSPY-FQRP  199 (403)
T ss_dssp             GGGTCEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHTSSSCCEEEEECTTTCTT-TCCT
T ss_pred             HHcCCEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeee----CHHHHHHHHHHcCCCEEEEECCCcccc-cCCc
Confidence            3467889999999999999999  45799999999999999986    6999999999999 9999999996542 1222


Q ss_pred             cccccCCCCcCeeeecccccC-Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                      +  . ++.+..+.+++|++++ |..++|+++++ +++.+.+...........+++.+.++..+++.+..  ..++..++.
T Consensus       200 ~--~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--r~~~~~~n~  274 (403)
T 3cog_A          200 L--A-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHV--RMEKHFKNG  274 (403)
T ss_dssp             T--T-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHH
T ss_pred             c--c-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHHHH
Confidence            1  1 2333334469999993 31468999984 67766665433333445678887777777654321  233333444


Q ss_pred             HHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---C---
Q psy6547         171 EIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---I---  229 (266)
Q Consensus       171 ~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~---  229 (266)
                      ..+.+.+++ ..      .+.+..         ...+.|.   ++.|.++.    ..++..+.|.+.|+++..   +   
T Consensus       275 ~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~---~~~~~l~~----~~~~~~~~l~~~~i~~~~~s~G~~~  346 (403)
T 3cog_A          275 MAVAQFLES-NPWVEKVIYPGLPSHPQHELVKRQCTGCTG---MVTFYIKG----TLQHAEIFLKNLKLFTLAESLGGFE  346 (403)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCS---EEEEEESS----CHHHHHHHHHHCSSSEECSCCSSSS
T ss_pred             HHHHHHHhc-CCCEEEEECCCCCCCCcHHHHHhcCCCCce---EEEEEecC----CHHHHHHHHHhCCcceEccCCCCcc
Confidence            444444443 10      111111         0113366   88888764    224556666777875431   1   


Q ss_pred             ------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 ------------------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                                              ..+.+|++++...+++.++.+.+.|+++
T Consensus       347 sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          347 SLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             CEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence                                    1479999998877777666666666544

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.78  E-value=1.3e-18  Score=150.01  Aligned_cols=224  Identities=14%  Similarity=0.150  Sum_probs=150.0

Q ss_pred             cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +...+.+++.++.+     |+++|++.+  .+++++++   ++|++|.+.    ++++|.++|++||+++|+||+|+.+.
T Consensus        95 ~~~~g~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~---~~n~~G~~~----~~~~i~~~~~~~~~~li~D~~~~~g~  165 (374)
T 3uwc_A           95 IVQAGATPVLVDSENGYVIDPEKIEAAI--TDKTKAIM---PVHYTGNIA----DMPALAKIAKKHNLHIVEDACQTILG  165 (374)
T ss_dssp             HHHTTCEEEEECBCTTSSBCGGGTGGGC--CTTEEEEC---CBCGGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred             HHHcCCEEEEEecCCCCCcCHHHHHHhC--CCCceEEE---EeCCcCCcC----CHHHHHHHHHHcCCEEEEeCCCccCc
Confidence            34456778888876     899999988  44688887   445677765    79999999999999999999996321


Q ss_pred             CcCcccccccCCCCcCeeeec----ccccC-CchhhhhheecH-HhhhccCCC------------CCCCCCCCcHHHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG----KALSG-GLYPISAVLADD-EVMGTLVPG------------THGSTYGGNPLACKL  149 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s----K~~~~-g~~~~g~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~a  149 (266)
                          .+.....+..+|++++|    |++++ | . .|+++++. .+.+.+...            ....++..+++.+++
T Consensus       166 ----~~~~~~~~~~~d~~~~s~~~~K~l~~~g-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
T 3uwc_A          166 ----RINDKFVGSWGQFACFSLHPLKNLNVWS-D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVI  239 (374)
T ss_dssp             ----EETTEETTSSSSEEEEECSSSSSSCCSS-C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHH
T ss_pred             ----eeCCeeccccccEEEEeCCCCCcCCccc-e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHH
Confidence                12223334446887766    99987 7 4 77777654 454333211            112333445555555


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  227 (266)
                      ....++.+  +++.++.+++.+++++.|++ ++. ..+..... ....   ++.+.+..   .+..++.+.|.++||.++
T Consensus       240 ~~~~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~L~~~gi~v~  310 (374)
T 3uwc_A          240 ANRLMNQL--ETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHV---FHIYVLRV---KYRDQLFQYLKDNGIEVK  310 (374)
T ss_dssp             HHHHGGGH--HHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECC---CSSEEEEE---TTHHHHHHHHHHTTBCCB
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCcee---eEEEEEEc---CCHHHHHHHHHHCCCccc
Confidence            54433322  44778888888899999888 542 11111011 1122   23333332   257889999999999988


Q ss_pred             cCCC---------------------------CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 PISN---------------------------NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 ~~~~---------------------------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++.+                           +.+|++++..+|++|++++++.|++++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          311 IHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             CSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            7631                           78999999999999999999999999865

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.78  E-value=2.4e-18  Score=147.43  Aligned_cols=219  Identities=15%  Similarity=0.043  Sum_probs=152.5

Q ss_pred             CCCCceeecC------CCHHHHHH-HHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPY------NDVDALEA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~------~d~~~l~~-~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~   88 (266)
                      ++ +++.++.      .|+++|++ .+  ++++++|++++++|++|.+. +        +++++||+++|+||+|+.+..
T Consensus       113 ~g-~~~~v~~~~~~~~~d~~~l~~~~i--~~~~k~v~~~~~~nptG~~~-~--------~i~~~~~~~li~D~a~~~~~~  180 (360)
T 1w23_A          113 LG-ETHIAASTKANSYQSIPDFSEFQL--NENDAYLHITSNNTIYGTQY-Q--------NFPEINHAPLIADMSSDILSR  180 (360)
T ss_dssp             TS-EEEEEEECGGGTSCSCCCGGGCCC--CTTEEEEEEESEETTTTEEC-S--------SCCCCCSSCEEEECTTTTTSS
T ss_pred             hC-CeEEeecccccCcCCccchHhhcc--CCCCCEEEEeCCCCCcceec-c--------cccccCCceEEEechhhcCCC
Confidence            45 6666663      36777877 77  45799999998899999874 3        223389999999999964421


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------CCCC-CCCcHHHHHHHHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------HGST-YGGNPLACKLAMTALDV  156 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~a~~~~l~~  156 (266)
                         ......+  +.-+.++||.+++  .++||+++++++.+.+....           .... .+.+...+.++..+++.
T Consensus       181 ---~~~~~~~--di~~~s~sK~~~~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  253 (360)
T 1w23_A          181 ---PLKVNQF--GMIYAGAQKNLGP--SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW  253 (360)
T ss_dssp             ---CCCGGGC--SEEEEETTTTTSC--TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH
T ss_pred             ---CcCcccC--CEEEEEcccccCC--CCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH
Confidence               1122222  2333347799973  24899999998887765432           1111 24456666777778877


Q ss_pred             Hhh----ccHHHHHHHHHHHHHHHhhcccccCCCcc--cE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         157 ILE----ENMIENAYKMGEIFRSELSSPANKSKASF--KL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       157 ~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      +..    +++.++++++++++.+.|++ ++. .+..  .. ...+.   ++++.++.  ..+..+++++|.++||.+.++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~-~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~  326 (360)
T 1w23_A          254 IKDLGGAEAIAKQNEEKAKIIYDTIDE-SNG-FYVGHAEKGSRSLM---NVTFNLRN--EELNQQFLAKAKEQGFVGLNG  326 (360)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHT-TTT-SSEESSCGGGBCSS---EEEEECSS--HHHHHHHHHHHHHTTEESCBC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHH-ccC-cccccCCchhccCc---EEEEEcCC--CccHHHHHHHHHHCCeeeecC
Confidence            654    34678888899999999988 542 1111  01 12355   78888865  445778999999999999876


Q ss_pred             C--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 S--NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .  .+++|++++..++++++++++++|++++++
T Consensus       327 ~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          327 HRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             CTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            3  478999999888999999999999988754

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.78  E-value=7.1e-19  Score=154.02  Aligned_cols=225  Identities=15%  Similarity=0.121  Sum_probs=148.9

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|+++|++++  .+++++|++++++|++|.+.    ++++|+++|+++|+++|+||+|+.    |..+
T Consensus       142 ~~~g~~~~~v~~~d~~~l~~ai--~~~t~~v~le~p~NptG~~~----~l~~i~~la~~~g~~livDe~~~~----~~~~  211 (414)
T 3ndn_A          142 PRWGVQTVFVDGDDLSQWERAL--SVPTQAVFFETPSNPMQSLV----DIAAVTELAHAAGAKVVLDNVFAT----PLLQ  211 (414)
T ss_dssp             HHTTCEEEEECTTCHHHHHHHT--SSCCSEEEEESSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTH----HHHC
T ss_pred             HHcCcEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----cHHHHHHHHHHcCCEEEEECCCcc----cccC
Confidence            3478899999999999999999  44689999999999999886    799999999999999999999952    1111


Q ss_pred             ccccCCCCcCeeeecccccC-CchhhhhheecHHhhh-ccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      ....++.++.+.++||++++ |.+++|+++++++.+. .+...........++..+.++...++.+  +...++..++++
T Consensus       212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~~~~~a~  289 (414)
T 3ndn_A          212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETL--AIRVQHSNASAQ  289 (414)
T ss_dssp             CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHH
T ss_pred             CchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            11234556666779999985 4257899999887665 3432111112234566655555554433  223455566777


Q ss_pred             HHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCceeccC----
Q psy6547         172 IFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      .+.+.|++ ...      +.++.         ..++.|.   +++|.++...   ..+..+|++.|...++.+..+    
T Consensus       290 ~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~---~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~s  365 (414)
T 3ndn_A          290 RIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGT---VVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKS  365 (414)
T ss_dssp             HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred             HHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCce---EEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCc
Confidence            77777766 321      11111         0234678   9999997510   124677888877666554432    


Q ss_pred             -----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 -----------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 -----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                                             ..+.+|+|++.    |+.+.+++.|++++
T Consensus       366 l~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          366 LVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             EEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             eeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence                                   24789999554    45566666666654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.78  E-value=2e-18  Score=148.71  Aligned_cols=225  Identities=12%  Similarity=0.110  Sum_probs=146.8

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      .+.+++.++.+     |+++|++.+  .+++++|++++.   +|.+.    ++++|.++|++||+++|+||+|+.. ...
T Consensus        94 ~g~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~---tG~~~----~l~~i~~l~~~~~~~li~D~a~~~~-~~~  163 (375)
T 2fnu_A           94 SGYTPVFAGIKNDGNIDELALEKLI--NERTKAIVSVDY---AGKSV----EVESVQKLCKKHSLSFLSDSSHALG-SEY  163 (375)
T ss_dssp             TTCEEEECCBCTTSSBCGGGSGGGC--CTTEEEEEEECG---GGCCC----CHHHHHHHHHHHTCEEEEECTTCTT-CEE
T ss_pred             CCCEEEEeccCCCCCCCHHHHHhhc--CcCceEEEEeCC---cCCcc----CHHHHHHHHHHcCCEEEEECccccC-CeE
Confidence            45566777653     788898888  346887665544   66664    6899999999999999999999632 211


Q ss_pred             cccccccCCCCcCeeeec--ccccCCchhhhhhee-c-HHhhhccCCCC----------------CCCCCCCcHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLA-D-DEVMGTLVPGT----------------HGSTYGGNPLACKLA  150 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~-~-~~~~~~~~~~~----------------~~~~~~~~~~~~~a~  150 (266)
                      .......++ +.++.++|  |++++|   +|+++. + +++.+.+....                ...++..+++.++++
T Consensus       164 ~~~~~~~~~-~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  239 (375)
T 2fnu_A          164 QNKKVGGFA-LASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALG  239 (375)
T ss_dssp             TTEETTSSS-SEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHH
T ss_pred             CCeeccccC-CeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHH
Confidence            110111122 34555688  999765   677666 3 55654443211                112234566665555


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcc--cEEecCccceeeEEEEeeCccc-hHHHHHHHHHHCCcee
Q psy6547         151 MTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASF--KLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDAGLVT  226 (266)
Q Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~  226 (266)
                      ...++.+  ++..++.+++++++.+.|++ +.. .....  .....+.   ++++.++.. +. +..++.+.|.++||.+
T Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~l~~~L~~~gi~v  312 (375)
T 2fnu_A          240 LSQLKKA--PFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNH---LYPILMHQK-FFTCKKLILESLHKRGILA  312 (375)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCS---CEEEEECGG-GGGGHHHHHHHHHHTTEEC
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceE---EEEEEeCcc-ccchHHHHHHHHHHCCCCc
Confidence            5444322  35678888899999999988 532 11111  0012234   557777541 23 6788999999999998


Q ss_pred             ccCC-------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         227 KPIS-------------------------NNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       227 ~~~~-------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +...                         .+++|++++..+|++++++++++|+++++++
T Consensus       313 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          313 QVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             BCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8310                         1679999999999999999999999998764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.77  E-value=2.1e-18  Score=149.47  Aligned_cols=226  Identities=15%  Similarity=0.116  Sum_probs=149.6

Q ss_pred             CCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cC
Q psy6547          15 PHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LG   87 (266)
Q Consensus        15 ~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~   87 (266)
                      ..+.+++.++.+      |+++|++++  .+++++|+   ++|++|.+.    ++++|.++|++||+++|+||+|+. ..
T Consensus        97 ~~g~~~~~v~~~~~~~~~d~~~l~~~i--~~~~~~v~---~~n~tG~~~----~l~~i~~la~~~~~~li~D~a~~~g~~  167 (388)
T 1b9h_A           97 RLGAVTVPVDVDAATYNLDPEAVAAAV--TPRTKVIM---PVHMAGLMA----DMDALAKISADTGVPLLQDAAHAHGAR  167 (388)
T ss_dssp             HTTCEEEEECBCTTTCCBCHHHHHHHC--CTTEEEEC---CBCGGGCCC----CHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred             HcCCEEEEEecCCCcCCCCHHHHHHhc--CcCceEEE---EeCCccCcC----CHHHHHHHHHHcCCEEEEecchhcCCc
Confidence            345567777642      799999999  44688877   445567765    899999999999999999999963 22


Q ss_pred             CcCcccccccCCCCcCeeeec--ccccCCchhhhhheecHH-h--hhccC---CC------------CCCCCCCCcHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDE-V--MGTLV---PG------------THGSTYGGNPLAC  147 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~-~--~~~~~---~~------------~~~~~~~~~~~~~  147 (266)
                      ..|.  ....++ +.++.+||  |+++||  ++|+++++++ +  .+.+.   ..            ..+.++..+++.+
T Consensus       168 ~~~~--~~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  242 (388)
T 1b9h_A          168 WQGK--RVGELD-SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSA  242 (388)
T ss_dssp             ETTE--EGGGSS-SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHH
T ss_pred             cCCe--eccccc-ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHH
Confidence            2222  122233 45566677  666554  6899988765 5  44431   11            0012233566666


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCccc---EEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         148 KLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFK---LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       148 ~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      +++...++.++  +..++++++++++.+.|++ +.. ......   .+..+.   ++++.++...+.+..++.+.|.++|
T Consensus       243 a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g  316 (388)
T 1b9h_A          243 SVLRAQLARLD--EQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHY---MAMFRIPGLTEERRNALVDRLVEAG  316 (388)
T ss_dssp             HHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCS---EEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceE---EEEEEeCCcCcccHHHHHHHHHHCC
Confidence            55555554432  3667778888999999887 532 111100   012356   8888886511236788999999999


Q ss_pred             ceeccCCC---------------------------------CEEEEeccCCC-CHHHHHHHHHHHHHHHHH
Q psy6547         224 LVTKPISN---------------------------------NIIRLSPALNI-TEQELREGLDIIINTINT  260 (266)
Q Consensus       224 i~~~~~~~---------------------------------~~iR~~~~~~~-t~~~i~~~~~~l~~~~~~  260 (266)
                      |.++++..                                 +.+|++++..+ |++|++++++.|.+++++
T Consensus       317 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          317 LPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             CCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99875311                                 25999999889 999999999999998764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.77  E-value=5.4e-18  Score=148.34  Aligned_cols=218  Identities=16%  Similarity=0.130  Sum_probs=140.9

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |+++|++++++. ++++|+++++++  |..    .++++|+++|++||+++|+||+| .++...+..+... ...+..+.
T Consensus       160 d~~~l~~~i~~~-~~~~v~~~~~~~--~~~----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~-~~~di~~~  231 (425)
T 3ecd_A          160 DYDQVEALAQQH-KPSLIIAGFSAY--PRK----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV-EHAHVVTS  231 (425)
T ss_dssp             CHHHHHHHHHHH-CCSEEEEECSCC--CSC----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG-GTCSEEEE
T ss_pred             CHHHHHHHHhhc-CCcEEEEccccC--CCc----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCch-hcCcEEEe
Confidence            899999999543 468888875333  233    37899999999999999999996 4332233322111 11233334


Q ss_pred             eecccccCCchhhhhheec-HHhhhccCCCCCC-CCCCCcHHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHHHhhcc
Q psy6547         106 ILGKALSGGLYPISAVLAD-DEVMGTLVPGTHG-STYGGNPLACKLAMTALDVIL-E--ENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~--~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      ++||++ +| .++||++++ +.+.+.+...... ...+++...++++..++.... .  +++.++++++++++++.|.+ 
T Consensus       232 s~sK~l-~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  308 (425)
T 3ecd_A          232 TTHKTL-RG-PRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA-  308 (425)
T ss_dssp             ESSGGG-CC-CSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cCCccc-CC-CCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-
Confidence            577999 55 678999987 4555555432121 122334444444444444332 2  35778888899999999887 


Q ss_pred             cccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------CCCEEEEecc----CCCCHHH
Q psy6547         181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPA----LNITEQE  246 (266)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~iR~~~~----~~~t~~~  246 (266)
                      .+.....  ..+.+.   ++++.++.. +.+...+.+.|.++||.+.    |+      ..+.+|++++    ...++++
T Consensus       309 ~g~~~~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~  382 (425)
T 3ecd_A          309 GGVDLVT--GGTDNH---LLLVDLRPK-GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAE  382 (425)
T ss_dssp             TTCEEGG--GSCSSS---EEEEECGGG-TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHH
T ss_pred             CCCeecc--CCCCce---EEEEEeCCC-CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHH
Confidence            4422211  113455   888887641 3467788899999999998    43      2358999954    4456999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6547         247 LREGLDIIINTINTM  261 (266)
Q Consensus       247 i~~~~~~l~~~~~~~  261 (266)
                      ++++++.|++++++.
T Consensus       383 i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          383 FREVGRLILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998775

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.77  E-value=6.3e-18  Score=150.05  Aligned_cols=224  Identities=16%  Similarity=0.126  Sum_probs=144.4

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC---c-------CCcCcccc
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG---L-------GRTGKLLA   94 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~---~-------~~~g~~~~   94 (266)
                      |+++|+++++++  +++++|++++++|++|+.+++.+++++|+++|++||++||+||++..   +       +..|....
T Consensus       168 d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~  247 (467)
T 1ax4_A          168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK  247 (467)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH
T ss_pred             CHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchh
Confidence            899999999653  36999999999999855669999999999999999999999998642   1       11221110


Q ss_pred             -cc-cCCCCcCee--eecccccCCchhh-hhheec-H-HhhhccCCC----CCCCCCCCcHHH-HHHHHHHHHHHhhccH
Q psy6547          95 -IH-YEDVRPDIV--ILGKALSGGLYPI-SAVLAD-D-EVMGTLVPG----THGSTYGGNPLA-CKLAMTALDVILEENM  162 (266)
Q Consensus        95 -~~-~~~~~~d~~--~~sK~~~~g~~~~-g~~~~~-~-~~~~~~~~~----~~~~~~~~~~~~-~~a~~~~l~~~~~~~~  162 (266)
                       +. .....+|++  ++||+++   .++ |+++.+ + ++++.+...    ....++.+.+.. +.++..+++....++.
T Consensus       248 ~~~~~~~~~~d~~~~s~sK~~g---~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  324 (467)
T 1ax4_A          248 EVIFDMYKYADALTMSAKKDPL---LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY  324 (467)
T ss_dssp             HHHHHHGGGCSEEEEETTSTTC---CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhhhhccccceEEEeccccCC---CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhH
Confidence             00 000113444  4778775   444 456566 5 666544321    111233333332 2333335554333335


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE-------EeeCccchHHHHHHHH-HHCCceecc-C----
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI-------LSVSAILEVYDVCIKM-KDAGLVTKP-I----  229 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~l-~~~gi~~~~-~----  229 (266)
                      .++..++++++.+.|++ .+....   .+..|.   ++|+.       ++. .+.+..+++++| .++||.+.+ +    
T Consensus       325 ~~~~~~~~~~l~~~L~~-~~~~~~---~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~~g~~~~  396 (467)
T 1ax4_A          325 LHYRIGQVKYLGDRLRE-AGIPIQ---YPTGGH---AVFVDCKKLVPQIPG-DQFPAQAVINALYLESGVRAVEIGSFLL  396 (467)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCBC---SSCCSS---EEEEESTTTCTTSCG-GGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCcc---cCCCce---EEEEehhhhcccccc-CCCCHHHHHHHHHHhcCceeeecCcccc
Confidence            55556777888888876 332221   123456   77877       322 134578899999 899999987 2    


Q ss_pred             ------C------CCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ------S------NNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ------~------~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                            +      .+++|++++ ..+|++++++++++|++++++.
T Consensus       397 ~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          397 GRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             CBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             ccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence                  1      279999988 4589999999999999988764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.77  E-value=2.3e-18  Score=149.42  Aligned_cols=224  Identities=13%  Similarity=0.165  Sum_probs=148.7

Q ss_pred             cCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-
Q psy6547          13 FGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-   85 (266)
Q Consensus        13 ~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-   85 (266)
                      +...+.+++.++.+      |+++|++.+  .+++++|+++   +++|...    ++++|.++|++||+++|+||+|+. 
T Consensus       113 ~~~~g~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~~~---n~tG~~~----~~~~i~~l~~~~~~~li~D~a~~~g  183 (391)
T 3dr4_A          113 VTYCGATPVLVDNDPRTFNLDAAKLEALI--TPRTKAIMPV---HLYGQIC----DMDPILEVARRHNLLVIEDAAEAVG  183 (391)
T ss_dssp             HHHTTCEEEEECBCTTTCSBCGGGSGGGC--CTTEEEECCB---CGGGCCC----CHHHHHHHHHHTTCEEEEECTTCTT
T ss_pred             HHHCCCEEEEEecCccccCcCHHHHHHhc--CCCceEEEEE---CCCCChh----hHHHHHHHHHHcCCEEEEECccccc
Confidence            34456677777765      789999888  4578888854   3566654    799999999999999999999952 


Q ss_pred             cCCcCcccccccCCCCcCeeeec----ccccCCchhhhhheecH-HhhhccCCC--------------CCCCCCCCcHHH
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLADD-EVMGTLVPG--------------THGSTYGGNPLA  146 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~~-~~~~~~~~~--------------~~~~~~~~~~~~  146 (266)
                      ....+.     ..+..+|+.++|    |++++|  +.|+++.+. .+.+.+...              .....+..+++.
T Consensus       184 ~~~~~~-----~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~  256 (391)
T 3dr4_A          184 ATYRGK-----KSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQ  256 (391)
T ss_dssp             CEETTE-----ETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHH
T ss_pred             ceECCe-----eecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHH
Confidence            211111     122234666666    999765  477777654 454333211              112234556666


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCc----ccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKAS----FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      ++++...++.+  +++.++.+++.+++++.|++ ++.....    ......+.   ++++.+++..+.+..++.+.|.++
T Consensus       257 aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~L~~~  330 (391)
T 3dr4_A          257 AAIGLAQLERV--DEHLAARERVVGWYEQKLAR-LGNRVTKPHVALTGRHVFW---MYTVRLGEGLSTTRDQVIKDLDAL  330 (391)
T ss_dssp             HHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGG-GTTSEECCCCCTTSCCCCS---SEEEEECSSCSSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCccccCcCCCCCCcceeE---EEEEEECCccchhHHHHHHHHHHC
Confidence            55555444332  45778888899999999988 4321110    00112233   467766542245688999999999


Q ss_pred             CceeccCC------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         223 GLVTKPIS------------------------NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       223 gi~~~~~~------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ||.++++.                        ...+|++++..+|++|++++++.|++++
T Consensus       331 GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          331 GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            99988652                        3579999999999999999999998753

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.77  E-value=7.1e-19  Score=153.08  Aligned_cols=227  Identities=11%  Similarity=0.034  Sum_probs=150.7

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc----CCEEEEeccccCcC
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY----NVLFIADEVQTGLG   87 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~----g~~li~De~~~~~~   87 (266)
                      .+...+.+++.++.+| ++|++++  .+++++|++++++|++|.+.    ++++|.++|+++    |+++|+||+|+.+.
T Consensus       113 ~~~~~G~~v~~v~~~d-~~l~~~i--~~~t~lv~~~~~~nptG~~~----~l~~i~~la~~~~~~~~~~livD~a~~~~~  185 (393)
T 1n8p_A          113 VANAHGVETSFTNDLL-NDLPQLI--KENTKLVWIETPTNPTLKVT----DIQKVADLIKKHAAGQDVILVVDNTFLSPY  185 (393)
T ss_dssp             TSTTTCSCCEEESSHH-HHHHHHS--CSSEEEEEECSSCTTTCCCC----CHHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred             HHHHcCcEEEEeCCCh-HHHHHhc--ccCceEEEEECCCCCcceec----CHHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence            3466788999999988 9999999  45799999999999999986    699999999999    99999999996542


Q ss_pred             CcCcccccccCCCCcCeeeeccccc-CCchhh-hhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILGKALS-GGLYPI-SAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE  164 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  164 (266)
                      . ...+   .++.+..+.+++|.++ +| +|+ |+++++ +++.+.+.........+.++..+.++..+++.+.  ...+
T Consensus       186 ~-~~~~---~~~~di~~~S~sK~~g~~G-~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~  258 (393)
T 1n8p_A          186 I-SNPL---NFGADIVVHSATKYINGHS-DVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRVR  258 (393)
T ss_dssp             H-CCGG---GGTCSEEEEETTTTTTCSS-CCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHH
T ss_pred             c-CCHH---HcCCeEEEEECcccccCCC-CceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHH--HHHH
Confidence            2 2221   2344444446999999 46 788 888884 7777766533221122345666666655555332  2334


Q ss_pred             HHHHHHHHHHHHhhccccc-------CCCccc---------EEe-c-CccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         165 NAYKMGEIFRSELSSPANK-------SKASFK---------LSS-G-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~-------~~~~~~---------~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      +..++.+.+.+.|++ ...       +.+...         .++ . |.   +++|.++.. ..+...+...|...++.+
T Consensus       259 ~~~~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~---i~~~~l~~~-~~~~~~~l~~l~~~~~~~  333 (393)
T 1n8p_A          259 QAALSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGG---MISFRIKGG-AEAASKFASSTRLFTLAE  333 (393)
T ss_dssp             HHHHHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCS---EEEEEESSC-HHHHHHHHHHCSSSEECS
T ss_pred             HHHHHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCcc---EEEEEeCCc-HHHHHHHHhhCCcceECC
Confidence            445566666666665 211       111100         012 3 66   899998741 235666666665434332


Q ss_pred             c----------c---C--------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         227 K----------P---I--------------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       227 ~----------~---~--------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .          |   .              ..+.+|+|++..+++++++.+.+.|+++
T Consensus       334 s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            1          1   1              1478999999999999999888888764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.77  E-value=5.4e-18  Score=150.44  Aligned_cols=226  Identities=14%  Similarity=0.110  Sum_probs=143.5

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----------cCCcCccc-
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----------LGRTGKLL-   93 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----------~~~~g~~~-   93 (266)
                      |+++|+++++++  +++++|++++++|++|+.+++.+++++|+++|++||++||+|+++..          .+..|... 
T Consensus       168 d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~  247 (467)
T 2oqx_A          168 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE  247 (467)
T ss_dssp             CHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHH
T ss_pred             CHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHH
Confidence            899999999642  36899999999888755568999999999999999999999966532          11222211 


Q ss_pred             ccc---cCCCCcCeeeecccccCCchhhhhheecHH----hhhccCCC----CCCCCCCC-cHHHHHHHHHHHHHHhhcc
Q psy6547          94 AIH---YEDVRPDIVILGKALSGGLYPISAVLADDE----VMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEEN  161 (266)
Q Consensus        94 ~~~---~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~----~~~~~~~~----~~~~~~~~-~~~~~~a~~~~l~~~~~~~  161 (266)
                      .+.   ....+..+.++||+++.+ . .|+++++++    .++.+...    ....+++. +..++++...+++....++
T Consensus       248 ~~~~~~~~~~d~~~~s~sK~~g~~-~-Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~  325 (467)
T 2oqx_A          248 QITRETYKYADMLAMSAKKDAMVP-M-GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD  325 (467)
T ss_dssp             HHHHHHGGGCSEEEEESSSTTCCS-S-CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhhhhccCCeEEEecccccCCC-C-ceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHH
Confidence            110   011222345688998633 1 356666655    33332211    11112222 2222222222223222224


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee----Cc--cchHHHHHHHH-HHCCceeccCC----
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV----SA--ILEVYDVCIKM-KDAGLVTKPIS----  230 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~--~~~~~~~~~~l-~~~gi~~~~~~----  230 (266)
                      ..++..++++++.+.|++ ++   +.. .+..+.   ++++.+..    .+  ..+..+++++| .++||.+.+++    
T Consensus       326 ~~~~~~~~~~~l~~~L~~-~~---~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~  397 (467)
T 2oqx_A          326 WLAYRIAQVQYLVDGLEE-IG---VVC-QQAGGH---AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL  397 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---CCE-EEECSS---CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-CC---Cee-ecCCce---EEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccc
Confidence            566677888899999988 42   332 234466   78887742    01  11256679999 89999998732    


Q ss_pred             -------------CCEEEEeccCC-CCHHHHHHHHHHHHHHHHHHh
Q psy6547         231 -------------NNIIRLSPALN-ITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       231 -------------~~~iR~~~~~~-~t~~~i~~~~~~l~~~~~~~~  262 (266)
                                   .+++|++++.. ++++++++++++|++++++..
T Consensus       398 ~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             CBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                         27999999988 999999999999999987643

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.77  E-value=6.5e-18  Score=145.72  Aligned_cols=221  Identities=14%  Similarity=0.122  Sum_probs=146.9

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++.+      |+++|++++  .+++++|+   +++++|...    ++++|.++|++||+++|+||+|+..   
T Consensus        96 ~g~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~---~~n~~G~~~----~l~~i~~l~~~~~~~li~D~a~~~g---  163 (373)
T 3frk_A           96 TGAKPIFVEPDIRTYNIDPSLIESAI--TEKTKAII---AVHLYGQPA----DMDEIKRIAKKYNLKLIEDAAQAHG---  163 (373)
T ss_dssp             HSCEEEEECEETTTTEECGGGTGGGC--CTTEEEEE---EECCTTCCC----CHHHHHHHHHHHTCEEEEECTTCTT---
T ss_pred             cCCEEEEEeccccccCcCHHHHHHhc--CCCCeEEE---EECCCcCcc----cHHHHHHHHHHcCCEEEEECCcccC---
Confidence            35667777765      889999998  44788888   344677765    8999999999999999999999522   


Q ss_pred             CcccccccCCCCcCeeeec----ccccC-CchhhhhheecH-HhhhccCCC------------CCCCCCCCcHHHHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILG----KALSG-GLYPISAVLADD-EVMGTLVPG------------THGSTYGGNPLACKLAM  151 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~s----K~~~~-g~~~~g~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~a~~  151 (266)
                       ..+.....+...|++++|    |++++ | . .|+++++. ++.+.+...            ..+.++..+++.++++.
T Consensus       164 -~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~  240 (373)
T 3frk_A          164 -SLYKGMKVGSLGDAAGFSFYPAKNLGSLG-D-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLR  240 (373)
T ss_dssp             -CEETTEETTSSSSEEEEECCTTSSSCCSS-S-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHH
T ss_pred             -CEECCEeccccccEEEEeCcCCCccCccc-e-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHH
Confidence             112223344446787776    99987 6 3 67777753 454433211            12234455776666665


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC
Q psy6547         152 TALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS  230 (266)
Q Consensus       152 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  230 (266)
                      ..++.+  +++.++.+++.+++++.|++ ++. .+..... ....   ++.+.+..   .+.+++.+.|.++||.+++..
T Consensus       241 ~~~~~~--~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~L~~~gI~v~~~~  310 (373)
T 3frk_A          241 VKLKYL--DKWNEERRKIAQKYIAGINN-PNV-IIPVEADYAKHV---WYTFVIRS---EKRDELQKYLNNNGIGTLIHY  310 (373)
T ss_dssp             HHHHTH--HHHHHHHHHHHHHHHHHCCC-TTE-ECCCCCTTEECC---CSSEEEEE---SSHHHHHHHHHHTTBCCBCSC
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHhcc-Cce-EeccCCCCCcee---eEEEEEEe---CCHHHHHHHHHHCCCCcccCc
Confidence            554433  44678888888889888887 441 1111000 1112   33333332   257889999999999988542


Q ss_pred             C---------------------------CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         231 N---------------------------NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       231 ~---------------------------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .                           +.+|++++..+|++|++++++.|+++..++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~  368 (373)
T 3frk_A          311 PIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH  368 (373)
T ss_dssp             SSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred             CCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            1                           689999999999999999999999887664

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.77  E-value=7.7e-18  Score=150.86  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=151.2

Q ss_pred             CceeecCC-----CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.+|.+     |+++|++.++++    ..+.+|+++..++++|.+.    ++++|+++|++||+++++|++|+++...
T Consensus       228 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~----~l~~I~~l~~~~~~~l~vD~a~~~~~~~  303 (497)
T 2qma_A          228 AVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID----DLDFIADMAVKHDMWMHVDGAYGGALIL  303 (497)
T ss_dssp             GEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC----CHHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence            68888876     899999999653    1244777777777788865    8999999999999999999999765433


Q ss_pred             CcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-hhhccCCCCCC----CCCCCcHHH----------HHHHH
Q psy6547          90 GKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-VMGTLVPGTHG----STYGGNPLA----------CKLAM  151 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~~~~~~~~~~----~~~~~~~~~----------~~a~~  151 (266)
                      +. +.....++ .+|+++  ++|+++++ ++.|+++.+.+ .++.+.....+    .+..++...          ..+..
T Consensus       304 ~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~  381 (497)
T 2qma_A          304 SS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVF  381 (497)
T ss_dssp             ST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHH
T ss_pred             Cc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHH
Confidence            33 22223344 567776  48999988 78999887643 34444321000    000011111          11223


Q ss_pred             HHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc---chHHHHHHHHHHCCc
Q psy6547         152 TALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---LEVYDVCIKMKDAGL  224 (266)
Q Consensus       152 ~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi  224 (266)
                      .+++.+..   +++.++..++++++.+.|++ +.. ..+.   ...+.   ++.|.+.....   ....++.+.|.++|+
T Consensus       382 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~---~~~~~---~v~f~~~~~~~~~~~l~~~l~~~l~~~G~  454 (497)
T 2qma_A          382 MTMQNVGPKALGDMYDHLLAQTLEVADMIRT-NDQFELLA---EPSLS---TVLFRATHETADLDELNKALRLEALTRGI  454 (497)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECS---CCSSS---EEEEEECCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEc---CCCce---EEEEEEcCCccCHHHHHHHHHHHHHhCCC
Confidence            34454433   34677788899999999987 432 1111   12344   78888764211   113567888889999


Q ss_pred             eeccC----CCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPI----SNNIIRLSP-ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~----~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+.+.    +.+++|+++ +..+|++++++++++|+++++++
T Consensus       455 ~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          455 AVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             CBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            88642    346899997 78899999999999999988764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.76  E-value=3e-18  Score=148.94  Aligned_cols=219  Identities=14%  Similarity=0.128  Sum_probs=143.7

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|++++++.+  .+++++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.+. .+..+
T Consensus       120 ~~~g~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~----~l~~i~~~~~~~~~~livD~~~~~~~-~~~~~  192 (389)
T 3acz_A          120 PRFGIEVDLIDTSDVEKVKAAW--KPNTKMVYLESPANPTCKVS----DIKGIAVVCHERGARLVVDATFTSPC-FLKPL  192 (389)
T ss_dssp             HHTTCEEEEECTTCHHHHHHTC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHTCEEEEECTTTCTT-TCCGG
T ss_pred             HHcCCEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCcccc-ccCcc
Confidence            3467889999999999999999  45789999999999999886    69999999999999999999996542 22222


Q ss_pred             ccccCCCCcCee--eecccccCCchhh-hhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          94 AIHYEDVRPDIV--ILGKALSGGLYPI-SAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        94 ~~~~~~~~~d~~--~~sK~~~~g~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                           +..+|++  +++|+++++..|+ |++++++ ++.+.+.........+.++..+.++...++.+.  ...++..++
T Consensus       193 -----~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~  265 (389)
T 3acz_A          193 -----ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMEN  265 (389)
T ss_dssp             -----GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred             -----ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHH
Confidence                 1345555  6999999432787 9999988 887766543221233457777776666665331  123344445


Q ss_pred             HHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----
Q psy6547         170 GEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----  229 (266)
Q Consensus       170 ~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----  229 (266)
                      ...+.+.+++ .+      .+.+..         ..++.|.   ++.|.+..     .+++.+.|.+.|+.+.+.     
T Consensus       266 ~~~l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~---~~~~~l~~-----~~~~~~~l~~~~i~~~~~s~G~~  336 (389)
T 3acz_A          266 GLKVAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGS---TFLFEMKS-----FEAAKKLMEHLKVCTLAVSLGCV  336 (389)
T ss_dssp             HHHHHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEESS-----HHHHHHHHTTCSSSEEBSCCCCS
T ss_pred             HHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCe---EEEEEECC-----HHHHHHHHHhCCCcEECcCCCCc
Confidence            5555555554 21      111111         0123466   88888753     345566666778776541     


Q ss_pred             -------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 -------------------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 -------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                               ..+.+|++++...    .+++++.|.++++
T Consensus       337 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~----~~~li~~l~~al~  387 (389)
T 3acz_A          337 DTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIEN----VDDIIADLKQALE  387 (389)
T ss_dssp             SCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHT
T ss_pred             ccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCC----HHHHHHHHHHHHh
Confidence                                     1479999977664    4555555555543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.76  E-value=6.6e-18  Score=145.03  Aligned_cols=202  Identities=11%  Similarity=0.013  Sum_probs=143.1

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP  117 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~  117 (266)
                      ++++++|++++++|++|.+..   ++++|      +|+++++|++|+.+ .  ....+..  .+.-+.++||++++  ..
T Consensus       140 ~~~t~~v~~~~~~n~tG~~~~---~l~~i------~~~~vivD~a~~~~-~--~~~~~~~--~d~~~~s~~K~~g~--~G  203 (362)
T 2c0r_A          140 QDNAAYLHLTSNETIEGAQFK---AFPDT------GSVPLIGDMSSDIL-S--RPFDLNQ--FGLVYAGAQKNLGP--SG  203 (362)
T ss_dssp             CTTEEEEEEESEETTTTEECS---SCCCC------TTSCEEEECTTTTT-S--SCCCGGG--CSEEEEETTTTTCC--SS
T ss_pred             CCCcCEEEEeCCcCccceecc---ccccc------CCCEEEEEChhhcc-C--CccchhH--CcEEEEeccccccC--cC
Confidence            457999999888999998622   35554      89999999999532 1  1112222  23334458999972  23


Q ss_pred             hhhheecHHhhhccCCC------------CCCCCCCCcHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHhhccc
Q psy6547         118 ISAVLADDEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       118 ~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      +||+++++++.+.+...            .....++.+...+.++.++++.+..    +...++++++++++.+.|++ +
T Consensus       204 ~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  282 (362)
T 2c0r_A          204 VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-S  282 (362)
T ss_dssp             CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred             cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-c
Confidence            79999998887776542            1123456777888888899987654    45778888899999999988 5


Q ss_pred             c-c-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         182 N-K-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       182 ~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      + . ..........+.   ++++.++.  +.+..+++++|.++||.+.++.  .+++|++++..+++++++++++.|+++
T Consensus       283 ~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~  357 (362)
T 2c0r_A          283 GGFYRGCVDVDSRSDM---NITFRLAS--EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHF  357 (362)
T ss_dssp             TTSSEESSCGGGBCSS---EEEEECSC--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCccccCCChHHcCCc---EEEEEcCC--cchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4 1 111110112334   67787765  4568899999999999887653  467999998888999999999999998


Q ss_pred             HHHH
Q psy6547         258 INTM  261 (266)
Q Consensus       258 ~~~~  261 (266)
                      ++++
T Consensus       358 ~~~~  361 (362)
T 2c0r_A          358 KRSR  361 (362)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.76  E-value=1.9e-18  Score=152.94  Aligned_cols=225  Identities=17%  Similarity=0.098  Sum_probs=141.6

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccC-CCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----------cCCcCccc
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----------LGRTGKLL   93 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~-~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----------~~~~g~~~   93 (266)
                      |+++|+++++++  +.+++|++++++| ++|. .++.+++++|+++|++||+++|+||+|+.          +.+.|..+
T Consensus       159 d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~  237 (456)
T 2ez2_A          159 DLKKLQKLIDEKGAENIAYICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSI  237 (456)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCH
T ss_pred             CHHHHHHHHHhccccceeEEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcch
Confidence            899999999642  2368888886655 7785 48999999999999999999999999963          33334321


Q ss_pred             c-c-ccCCCCcCeeeec-ccccCCchhhhhhee-cHHhhhccCCCC----CCCCC-CCcHHHHHH-HHHHHHHHhhccHH
Q psy6547          94 A-I-HYEDVRPDIVILG-KALSGGLYPISAVLA-DDEVMGTLVPGT----HGSTY-GGNPLACKL-AMTALDVILEENMI  163 (266)
Q Consensus        94 ~-~-~~~~~~~d~~~~s-K~~~~g~~~~g~~~~-~~~~~~~~~~~~----~~~~~-~~~~~~~~a-~~~~l~~~~~~~~~  163 (266)
                      . + ...+..+|++++| |.+++. -++||+++ ++++.+.+....    ...++ +.++..+.+ +.+.++.++ +++.
T Consensus       238 ~~~~~~~~~~~d~~~~S~kk~~~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~  315 (456)
T 2ez2_A          238 AEIVHEMFSYADGCTMSGKKDCLV-NIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYI  315 (456)
T ss_dssp             HHHHHHHHTTCSEEEEETTTTTCC-SSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHH
T ss_pred             hhhhhhhcccCCEEEEeCcccCCC-CceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHH
Confidence            1 0 0112235676653 444432 24788888 677766543211    01111 223333333 444343322 4567


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC-ccch-----HHHHHHHH-HHCCceecc-C------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS-AILE-----VYDVCIKM-KDAGLVTKP-I------  229 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-----~~~~~~~l-~~~gi~~~~-~------  229 (266)
                      ++..++.+++++.|++ .+...+   .+..|.   ++++.+..- .+.+     .+.++++| .++||.+.+ +      
T Consensus       316 ~~~~~~~~~l~~~L~~-~g~~~~---~p~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~  388 (456)
T 2ez2_A          316 EHRVKQVRYLGDKLKA-AGVPIV---EPVGGH---AVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR  388 (456)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCBC---SSCCSS---EEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB
T ss_pred             HHHHHHHHHHHHHHhc-CCCccc---cCCCce---EEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc
Confidence            7777788888888887 432221   123466   778776320 0112     34447777 588997643 1      


Q ss_pred             ----------CCCEEEEeccCC-CCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ----------SNNIIRLSPALN-ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ----------~~~~iR~~~~~~-~t~~~i~~~~~~l~~~~~~~  261 (266)
                                +.+++|++++.. ++++++++++++|++++++.
T Consensus       389 ~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~  431 (456)
T 2ez2_A          389 NNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             CTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence                      137899998876 89999999999999998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.76  E-value=5.4e-19  Score=152.84  Aligned_cols=231  Identities=11%  Similarity=0.079  Sum_probs=141.8

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEE-EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~-i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..+.+++.+  .|+++|++. +  +++++ |++++++|++|.   +..++++|.++|++||+++|+||+|..+. .+...
T Consensus       120 ~~g~~~~~v--~d~~~l~~~-~--~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~~~  190 (374)
T 2aeu_A          120 IVNAKYFES--DKVGEILNK-I--DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RLLFN  190 (374)
T ss_dssp             HTTCEEEEE--SCHHHHHTT-C--CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHHTT
T ss_pred             HcCcEEEEe--CCHHHHHhc-C--CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-ccccc
Confidence            346677777  689999887 3  46788 888888888873   45699999999999999999999995431 11110


Q ss_pred             c--cccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          94 A--IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        94 ~--~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .  ...++.+..+.++||+++ | +++||+++++++++.+.........+.+++.+.++.++++.+..+ ..++..++++
T Consensus       191 ~~~~~~~~~di~~~S~sK~l~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~  267 (374)
T 2aeu_A          191 QPPALKLGADLVVTSTDKLME-G-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAK  267 (374)
T ss_dssp             CCCHHHHTCSEEEEETTSSSS-S-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHH
T ss_pred             cCCccccCCcEEEecCccccc-C-cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence            0  111233333335999986 5 689999999988877764322233356888888888888765321 2233333333


Q ss_pred             HH----HHHhhccccc----CCCcccEEecCccceeeEEE-EeeCccc---hHHHHHHHH-HHCCceeccC-----CCCE
Q psy6547         172 IF----RSELSSPANK----SKASFKLSSGGLKKSINTLI-LSVSAIL---EVYDVCIKM-KDAGLVTKPI-----SNNI  233 (266)
Q Consensus       172 ~l----~~~l~~~~~~----~~~~~~~~~~g~~~~~~~~~-~~~~~~~---~~~~~~~~l-~~~gi~~~~~-----~~~~  233 (266)
                      .+    ++.|.+.+..    ..+.....+.|.   ++++. ...  ..   +..+++.++ .++||.+.|+     ..++
T Consensus       268 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~---~~~~~~~~~--~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~  342 (374)
T 2aeu_A          268 NFDLSKIEKLNKELKAIDDNINIVYERTPTGF---VIKRVYKDD--TINIKKLIEIGFNLLKNYGIITITVAGMPGASKS  342 (374)
T ss_dssp             HCCCHHHHHHHHHHTTTCTTEEEEEEECSSEE---EEEEEESSH--HHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCS
T ss_pred             HHHHHHHHHHHHhhhhhhhccCcceeeCCceE---EEEeecccc--cccccchHHHHHHHHHhCCEEEecCCCCCCCCCe
Confidence            33    3443331211    111111223344   44443 211  11   123366555 5789999875     2358


Q ss_pred             EEEeccC-CCCHHHHHHHHHHHHHHHHHHh
Q psy6547         234 IRLSPAL-NITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       234 iR~~~~~-~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +|++++. ..++++++++.+.|+++++++.
T Consensus       343 lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          343 LRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             EEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            9999753 2233348888888888887764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.76  E-value=2e-18  Score=150.89  Aligned_cols=217  Identities=16%  Similarity=0.107  Sum_probs=141.4

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcccccccCCCCcCe
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~~~~~~~~~~~d~  104 (266)
                      .|+++|+++++++ ++++|+++++++  |...    ++++|+++|++||+++|+||+|+ ++...|..... . . .+|+
T Consensus       156 ~d~~~l~~~i~~~-~~~~v~~~~~~~--~~~~----~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~-~-~~di  225 (420)
T 3gbx_A          156 IDYDEMAKLAKEH-KPKMIIGGFSAY--SGVV----DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP-V-P-HAHV  225 (420)
T ss_dssp             CCHHHHHHHHHHH-CCSEEEECCTTC--CSCC----CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS-T-T-TSSE
T ss_pred             cCHHHHHHHHHhc-CCeEEEEecCcc--CCcc----CHHHHHHHHHHcCCEEEEECCcchhceecccCCcc-c-c-cCCE
Confidence            5899999999653 478888865433  2333    59999999999999999999983 33222322111 1 1 2667


Q ss_pred             ee--ecccccCCchhhhhheecH---HhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHH
Q psy6547         105 VI--LGKALSGGLYPISAVLADD---EVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRS  175 (266)
Q Consensus       105 ~~--~sK~~~~g~~~~g~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~  175 (266)
                      ++  +||+++|  .+.|++++++   ++.+.+.......+. +++...++++..++.....   +++.+++.++++++++
T Consensus       226 ~~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  303 (420)
T 3gbx_A          226 VTTTTHKTLAG--PRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVE  303 (420)
T ss_dssp             EEEESSGGGCS--CSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccCCCC--CCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence            66  7799974  4578888886   666655432222222 2233334444444443322   3567888888899998


Q ss_pred             HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----------CCCCEEEEeccCC----
Q psy6547         176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPALN----  241 (266)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~iR~~~~~~----  241 (266)
                      .|.+ .+...+.  ....+.   ++++.+... +.+...+.+.|.++||.+.+          .+.+.+|++++..    
T Consensus       304 ~L~~-~g~~~~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~  376 (420)
T 3gbx_A          304 VFLN-RGYKVVS--GGTENH---LFLLDLVDK-NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRG  376 (420)
T ss_dssp             HHHH-TTCEEGG--GSCSSS---EEEEECGGG-TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred             HHHh-cCCeecc--CCCCCe---EEEEEcCCC-CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccC
Confidence            8887 4321111  112344   888887541 34677888889999999887          2345699997654    


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++++++++++.|++++++.
T Consensus       377 ~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          377 FKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhCc
Confidence            56899999999999988664

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.76  E-value=1.7e-18  Score=152.72  Aligned_cols=225  Identities=16%  Similarity=0.103  Sum_probs=148.5

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCE-EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~-~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +..++.+++.++.+|+++|+++++.  ++ ++|++++++|++|.+.    ++++|.++|++||+++|+||+|+.. ....
T Consensus       174 ~~~~G~~v~~v~~~d~~~l~~ai~~--~tv~lV~le~p~NptG~v~----dl~~I~~la~~~g~~livD~a~~~~-~~~~  246 (445)
T 1qgn_A          174 LPKMGITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCV----DIELVSKLCHEKGALVCIDGTFATP-LNQK  246 (445)
T ss_dssp             GGGGTCEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTCT-TTCC
T ss_pred             HHHcCCEEEEeCCCCHHHHHHHhcc--CCCCEEEEeCCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCccc-ccCC
Confidence            3456788999999999999999954  46 9999999999999886    7999999999999999999999532 1111


Q ss_pred             ccccccCCCCcCeee--ecccccCC-chhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVI--LGKALSGG-LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~--~sK~~~~g-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                           .....+|+++  ++|.++|+ ..++|++++++++++.+...........+++.+..+..+++.+.  ...++..+
T Consensus       247 -----~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~  319 (445)
T 1qgn_A          247 -----ALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQNS  319 (445)
T ss_dssp             -----TTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHH
T ss_pred             -----ccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHH--HHHHHHHH
Confidence                 1234466665  88999854 12689999998887766532211112245665555555554332  22344455


Q ss_pred             HHHHHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547         169 MGEIFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----  229 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----  229 (266)
                      +.+.+.+.|++ .+.      +.++.         ..++.|.   +++|.++.. ..+...+.+.|...++.++.+    
T Consensus       320 ~a~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~---ivsf~l~~~-~~~~~~~l~~l~~~~i~~s~G~~~s  394 (445)
T 1qgn_A          320 TALRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGG---AVSFEVDGD-LLTTAKFVDALKIPYIAPSFGGCES  394 (445)
T ss_dssp             HHHHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCS---EEEEEESSC-HHHHHHHHHHCSSSEECSCCCSSSC
T ss_pred             HHHHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCc---EEEEEECCC-HHHHHHHHHhCCCceEeccCCCCce
Confidence            56777777776 321      11110         0123566   999998751 123566776665334432211    


Q ss_pred             -----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 -----------------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 -----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                             ..+.+|+|++    .|+++.+++.|+++++.
T Consensus       395 l~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          395 IVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             EEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             eeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence                                   1479999955    46799999999998864

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.76  E-value=1.5e-17  Score=147.46  Aligned_cols=222  Identities=11%  Similarity=0.102  Sum_probs=147.4

Q ss_pred             CCCCceeecC--------CCHHHHHHHH-hc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          16 HMPGYNIIPY--------NDVDALEAKL-KS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        16 ~~~~v~~~~~--------~d~~~l~~~l-~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      .+.+++.++.        .|+++|++++ +.  .+++.+|++...++++|.+.    ++++|.++|+++|+++++|++|.
T Consensus       196 ~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~----~l~~I~~la~~~g~~v~vD~A~~  271 (456)
T 2z67_A          196 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD----DIVEIAKICENYDIPHIINGAYA  271 (456)
T ss_dssp             TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC----CHHHHHHHHHHHTCCEEEECTTT
T ss_pred             cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcC----CHHHHHHHHHHcCCcEEEECcch
Confidence            4556666654        3799999999 42  23677777666767788875    99999999999999999999996


Q ss_pred             CcCCcCc-cccccc-CCCCcCeee--ecccccCCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547          85 GLGRTGK-LLAIHY-EDVRPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus        85 ~~~~~g~-~~~~~~-~~~~~d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      ++. .|. ...... .+ .+|+++  ++|+++++ +++|++++ ++++.+.+.+...+... .++  ..++.+++..+..
T Consensus       272 ~~~-~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~~~g~~~-~~~--~~~~~aal~~l~~  345 (456)
T 2z67_A          272 IQN-NYYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRAS-ATP--VVNTLVSLLSMGS  345 (456)
T ss_dssp             TTC-HHHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBC-SHH--HHHHHHHHHHHHH
T ss_pred             HHH-HHhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcCCCCCCC-CCH--HHHHHHHHHHHHH
Confidence            552 121 111111 11 456555  68988888 88999999 56776666433222221 221  2233334443333


Q ss_pred             ---ccHHHHHHHHHHHHHHHhhccc----ccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc---eec--
Q psy6547         160 ---ENMIENAYKMGEIFRSELSSPA----NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL---VTK--  227 (266)
Q Consensus       160 ---~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi---~~~--  227 (266)
                         ++..++..++++++.+.|++ +    +...+.  .  . .   +++|.+... + ...++.++|.++|+   -+.  
T Consensus       346 ~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~~--~--~-~---~v~~~~~~~-~-~~~~l~~~L~~~gi~~~rv~~~  414 (456)
T 2z67_A          346 KNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLD--V--E-S---PIASCISVN-S-DPVEIAAKLYNLRVTGPRGIKK  414 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBCC--C--C-C---SSEEEEECS-S-CHHHHHHHHHHTTEESCEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cccccCCEecC--C--C-C---eEEEEEecc-c-HHHHHHHHHHHcCCCcceEEee
Confidence               45678888999999999988 5    322221  1  1 3   677777321 1 25789999999986   232  


Q ss_pred             ----------cCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         228 ----------PISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       228 ----------~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                                ....+++|++++..+|++++++++++|++++
T Consensus       415 ~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          415 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             TCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             cCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence                      2234799999999999999999999998754

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.75  E-value=6.2e-18  Score=149.53  Aligned_cols=219  Identities=14%  Similarity=0.081  Sum_probs=141.3

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCe
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      .|+++|++++++. ++++++++...++++.      ++++|+++|++||+++|+||+| .|+...|..+.. ..+.+..+
T Consensus       172 ~d~~~l~~~i~~~-~~~~i~~~~~~~~~~~------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~  243 (447)
T 3h7f_A          172 IDMDAVRATALEF-RPKVIIAGWSAYPRVL------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVS  243 (447)
T ss_dssp             CCHHHHHHHHHHH-CCSEEEEECSSCCSCC------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEE
T ss_pred             cCHHHHHHHHHhc-CCeEEEEcCCCCCCcc------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEE
Confidence            4899999999543 4567777444333332      8899999999999999999997 443222322111 11233334


Q ss_pred             eeecccccCCchhhhhheecHHhhhccCCCCCCCCCC-CcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcc
Q psy6547         105 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG-GNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSP  180 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~  180 (266)
                      .++||+++ | ++.|++++++++.+.+.......+++ ++...++++..++.....   +++.+++.++++++.+.|++ 
T Consensus       244 ~s~sK~l~-G-~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  320 (447)
T 3h7f_A          244 TTVHKTLG-G-GRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-  320 (447)
T ss_dssp             EESSGGGC-C-CSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             ecCCcCCC-C-CCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            45899995 5 78899999988776665332222222 233334555555554332   34778888899999999987 


Q ss_pred             c-----ccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------CCCEEEEeccCC----
Q psy6547         181 A-----NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPALN----  241 (266)
Q Consensus       181 ~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~iR~~~~~~----  241 (266)
                      .     +...+..  ...+.   ++++.+... +.+...+.+.|.++||.+.    +.      ..+.+|++++..    
T Consensus       321 ~~~~~~g~~~~~~--~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~  394 (447)
T 3h7f_A          321 PDVAKAGVSVVSG--GTDVH---LVLVDLRDS-PLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRG  394 (447)
T ss_dssp             HHHHHTTCEEGGG--SCSSS---EEEEECTTS-SCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHT
T ss_pred             ccccCCCeEEecC--CCCCC---EEEEEcCCC-CCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCC
Confidence            4     3211110  11234   777777532 3456677777888899988    33      347899987643    


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINTM  261 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .++++++++++.|++++++.
T Consensus       395 ~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          395 FGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHSG
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            68999999999999998764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.75  E-value=3.6e-17  Score=146.76  Aligned_cols=233  Identities=13%  Similarity=0.052  Sum_probs=151.3

Q ss_pred             CceeecCC-----CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.+|.+     |+++|++.++++    .++++|+++..++++|.+.    ++++|+++|++||+++++|++|+++...
T Consensus       215 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~----~l~~I~~la~~~g~~lhvD~a~~~~~~~  290 (504)
T 2okj_A          215 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD----PIQEIADICEKYNLWLHVDAAWGGGLLM  290 (504)
T ss_dssp             GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC----CHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC----CHHHHHHHHHHcCCEEEEehhhhhHHHh
Confidence            78888875     899999999652    2588899988888889875    8999999999999999999999765322


Q ss_pred             CcccccccCCC-CcCeeee--cccccCCchhhhhheecH-Hhhhc----cCCCCCC-CC----------------CCCcH
Q psy6547          90 GKLLAIHYEDV-RPDIVIL--GKALSGGLYPISAVLADD-EVMGT----LVPGTHG-ST----------------YGGNP  144 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~~--sK~~~~g~~~~g~~~~~~-~~~~~----~~~~~~~-~~----------------~~~~~  144 (266)
                      ...+.....++ .+|++++  +|+++++ ++.|+++.++ ++++.    ...+... ..                .....
T Consensus       291 ~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~  369 (504)
T 2okj_A          291 SRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDI  369 (504)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCH
T ss_pred             CHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccH
Confidence            22121222333 5677775  5999977 7899998875 35442    1122111 00                01134


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--c------------
Q psy6547         145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA--I------------  209 (266)
Q Consensus       145 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~------------  209 (266)
                      +.+.+++.++..-.-+++.++..++++++.+.|++ ... ..+.. ......   ++.|......  +            
T Consensus       370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~-~~p~~~---~v~f~~~~~~~~~~~~~~~~~~~~~  444 (504)
T 2okj_A          370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFN-GEPEHT---NVCFWYIPQSLRGVPDSPQRREKLH  444 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSS-SCCSSS---CEEEEECCGGGSSCCCCHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEec-CCCCeE---EEEEEEeCccccccccchhhHHHHH
Confidence            55555555553222244677888899999999987 432 22211 012233   4555542210  0            


Q ss_pred             chHHHHHHHHHHCCce-ecc--C-C-CCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLV-TKP--I-S-NNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~-~~~--~-~-~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ....++.+.|.++|++ +.+  . + .+++|+++. ..+|++++++++++|+++++++
T Consensus       445 ~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          445 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             THHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            0146788999999964 332  1 2 258999985 7889999999999999987664

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.75  E-value=1.5e-16  Score=140.84  Aligned_cols=234  Identities=11%  Similarity=0.051  Sum_probs=152.3

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc------CCEEEEeccc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQ   83 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~------g~~li~De~~   83 (266)
                      ++.+++.++.+      |+++|++.+  .+++++|+++.+++++|.+.    ++++|.++|+++      |+++++|++|
T Consensus       159 ~G~~v~~v~~~~~~~~~d~~~l~~~i--~~~t~~v~~~~~~n~tG~~~----~l~~I~~ia~~~~~~~~~~~~l~vD~a~  232 (452)
T 2dgk_A          159 WDVELREIPMRPGQLFMDPKRMIEAC--DENTIGVVPTFGVTYTGNYE----FPQPLHDALDKFQADTGIDIDMHIDAAS  232 (452)
T ss_dssp             TTCEEEECCCBTTBCSCCHHHHHHHC--CTTEEEEECBBSCTTTCBBC----CHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred             cCceEEEEecCCCCCeECHHHHHHHH--hhCCEEEEEEcCCcCCcccC----CHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence            35567777753      799999999  44688999888888899886    899999999996      9999999999


Q ss_pred             cCcCC--cCcccccccCCCCcCeee--ecccccCCchhhhhheecHH-hh-hccC---CCCCC------CCCCCcHHHHH
Q psy6547          84 TGLGR--TGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDE-VM-GTLV---PGTHG------STYGGNPLACK  148 (266)
Q Consensus        84 ~~~~~--~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~-~~~~---~~~~~------~~~~~~~~~~~  148 (266)
                      .++..  ..........--..|.++  .+|++.+| ++.|+++++.+ .. +.+.   .+...      ...+.+.....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  311 (452)
T 2dgk_A          233 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVI  311 (452)
T ss_dssp             GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHH
T ss_pred             HHHHHHhhCccchhhcCCCCCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHH
Confidence            76521  011111111011355555  45977788 89999988643 33 3332   11100      01111111223


Q ss_pred             HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEE----ecCccceeeEEEEeeCc--cchHHHHHHHH
Q psy6547         149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLS----SGGLKKSINTLILSVSA--ILEVYDVCIKM  219 (266)
Q Consensus       149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~--~~~~~~~~~~l  219 (266)
                      +..++++.+..   ++..++..++++++.+.|++ ++.  +....+    ....   ++.|.++...  ..+..++.++|
T Consensus       312 ~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~--~~~~~~~~~~~~~~---~v~f~~~~~~~~~~~~~~l~~~L  385 (452)
T 2dgk_A          312 AQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGP--YEFICTGRPDEGIP---AVCFKLKDGEDPGYTLYDLSERL  385 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSS--EEEEEECCTTTBSS---EEEEEECTTCCCSCCHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCC--eEEecCCCCCCCeE---EEEEEecCcccccCCHHHHHHHH
Confidence            33344444433   34677788888999999887 432  221011    1234   7888776411  13458899999


Q ss_pred             HHCCceecc----C---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         220 KDAGLVTKP----I---SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       220 ~~~gi~~~~----~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      .++|+.+..    .   +.+++|++++..+|+++++++++.|+++++.+.
T Consensus       386 ~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~  435 (452)
T 2dgk_A          386 RLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS  435 (452)
T ss_dssp             HHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999996542    2   245899999988999999999999999887754

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.75  E-value=1.2e-16  Score=143.30  Aligned_cols=233  Identities=11%  Similarity=0.024  Sum_probs=155.2

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc------CCEEEEeccc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQ   83 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~------g~~li~De~~   83 (266)
                      ++.+++.++.+      |+++|++++  .+++++|+++...+++|.+.    ++++|.++|+++      |+++++|++|
T Consensus       174 ~G~~~~~v~~~~~~~~~d~~~l~~~i--~~~t~~v~~~~~~n~tG~~~----~l~~I~~ia~~~~~~~~~~~~l~VD~A~  247 (502)
T 3hbx_A          174 FEVELKEVKLSEGYYVMDPQQAVDMV--DENTICVAAILGSTLNGEFE----DVKLLNDLLVEKNKETGWDTPIHVDAAS  247 (502)
T ss_dssp             TTCEEEEECCBTTBCSCCHHHHHHHC--CTTEEEEEEEBSCTTTCCBC----CHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred             cCceeEEEecCCCcCcCCHHHHHHHH--hhCCEEEEEecCCCCCCccc----CHHHHHHHHHHhhhccCCCCeEEEECCc
Confidence            45667777643      799999999  45688888888888889886    899999999999      9999999999


Q ss_pred             cCcCC---cCc-ccccccCCCCcCeee--ecccccCCchhhhhheec-HHhh-hccC---CCCC------CCCCCCcHHH
Q psy6547          84 TGLGR---TGK-LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLAD-DEVM-GTLV---PGTH------GSTYGGNPLA  146 (266)
Q Consensus        84 ~~~~~---~g~-~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~-~~~~-~~~~---~~~~------~~~~~~~~~~  146 (266)
                      .++..   .+. .+.+...  ..|.++  ..|++.++ .+.|+++.. ++.+ +.+.   .+..      ...++.+...
T Consensus       248 ~~~~~p~~~~~~~~~~~~~--~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~  324 (502)
T 3hbx_A          248 GGFIAPFLYPELEWDFRLP--LVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQ  324 (502)
T ss_dssp             GGGTHHHHCTTCCCSTTST--TEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHH
T ss_pred             cchhhhhhCcccccccCCC--CceEEEECcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHH
Confidence            76521   111 1111112  344444  66888777 778887764 3433 2221   1100      0112222223


Q ss_pred             HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547         147 CKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA  222 (266)
Q Consensus       147 ~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  222 (266)
                      ..+...+++.+..   .+..++..++++++.+.|++ ++. ..+..  ...   .|++.|.++.....+..++.+.|.++
T Consensus       325 ~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~--~~~---~~~v~f~~~~~~~~~~~~l~~~L~~~  398 (502)
T 3hbx_A          325 VIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSK--DEG---VPLVAFSLKDSSCHTEFEISDMLRRY  398 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSC--SSS---SSEEEEEESSCSSCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeC--CCC---ceEEEEEecCCCcCCHHHHHHHHHhC
Confidence            4444555555444   34667778888899999988 542 11110  012   24888888653235677999999999


Q ss_pred             CceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         223 GLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       223 gi~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      |+.+...       +..++|++++..+|+++++++++.|+++++++..
T Consensus       399 Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          399 GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9987521       2368999999999999999999999999887643

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.75  E-value=2.6e-17  Score=143.76  Aligned_cols=217  Identities=13%  Similarity=0.133  Sum_probs=144.4

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcccccccCCCCcCe
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~~~~~~~~~~~d~  104 (266)
                      .|+++|++++++. ++++|++++.++  |.+.    ++++|+++|++||+++|+||+|. ++...|... ....  ..|+
T Consensus       151 ~d~~~l~~~i~~~-~~~~v~~~~~~~--G~~~----~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~~~--~~di  220 (417)
T 3n0l_A          151 IDYEKVREIAKKE-KPKLIVCGASAY--ARVI----DFAKFREIADEIGAYLFADIAHIAGLVVAGEHP-SPFP--YAHV  220 (417)
T ss_dssp             CCHHHHHHHHHHH-CCSEEEECCSSC--CSCC----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CCTT--TCSE
T ss_pred             cCHHHHHHHHHhc-CCeEEEECCccc--CccC----CHHHHHHHHHHcCCEEEEECccchhhhhcccCC-Cccc--cceE
Confidence            4899999999532 567888766443  6654    59999999999999999999973 321112211 1111  2456


Q ss_pred             ee--ecccccCCchhhhhheec-HHhhhccCCCC-CCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHh
Q psy6547         105 VI--LGKALSGGLYPISAVLAD-DEVMGTLVPGT-HGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL  177 (266)
Q Consensus       105 ~~--~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l  177 (266)
                      ++  +||++ +| +++||++++ +++.+.+.... ...+.++++..+++...++.....   +++.+++.++++++.+.|
T Consensus       221 ~~~s~sK~l-~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L  298 (417)
T 3n0l_A          221 VSSTTHKTL-RG-PRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVL  298 (417)
T ss_dssp             EEEESSTTT-CS-CSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcccc-CC-CCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            55  55999 55 678999998 67776665332 233334455566666666655322   356777888888888888


Q ss_pred             hcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------CCCEEEEeccC----CCC
Q psy6547         178 SSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NIT  243 (266)
Q Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~iR~~~~~----~~t  243 (266)
                      ++ .+......  ...+.   ++++.+... +.+..++.+.|.++||.+.+.          ..+.+|++++.    ..+
T Consensus       299 ~~-~g~~~~~~--~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~  371 (417)
T 3n0l_A          299 MD-RKFKLVSD--GTDNH---LVLMSFLDR-EFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFK  371 (417)
T ss_dssp             HH-TTCEEGGG--SCSSS---EEEEECTTS-SSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCC
T ss_pred             Hh-CCceeccC--CCCce---EEEEEcccC-CCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCC
Confidence            87 43211110  12234   778777531 346788899999999998742          23679998653    367


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIINTINTM  261 (266)
Q Consensus       244 ~~~i~~~~~~l~~~~~~~  261 (266)
                      ++++++++++|++++++.
T Consensus       372 ~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          372 EKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999998754

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.75  E-value=3.1e-19  Score=155.21  Aligned_cols=222  Identities=14%  Similarity=0.035  Sum_probs=146.8

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      .+...+.+++.++.+ .+.++     .+++++++++.++|++|.+. +     +|++.+++++++||+||+|.. .. ..
T Consensus       135 ~~~~~g~~~~~~~~d-~~~l~-----~~~~k~v~l~~p~NPtG~~~-~-----~l~~~~~~~~~~ii~De~y~~-~~-~~  200 (391)
T 3bwn_A          135 ETTYVRSGMYKWEGD-AWGFD-----KKGPYIELVTSPNNPDGTIR-E-----TVVNRPDDDEAKVIHDFAYYW-PH-YT  200 (391)
T ss_dssp             HHHTTCBTTEEEEEE-STTCC-----CCSCEEEEEESSCTTTCCCC-C-----CCC-----CCCEEEEECTTCS-TT-TS
T ss_pred             HHHHcCCeEEEecCC-HHHcC-----CCCCEEEEECCCCCCCchhH-H-----HHHHHhhcCCCEEEEeCCCCC-CC-CC
Confidence            344556677776653 23322     24678888877888899874 3     344422233399999999962 11 11


Q ss_pred             ccccccCCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---------h-
Q psy6547          92 LLAIHYEDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---------E-  159 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~-  159 (266)
                      .+. ...+....+.++||.++ +| +|+||+++ ++++.+.+.......+++.+++++.++..+|+...         . 
T Consensus       201 ~l~-~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  278 (391)
T 3bwn_A          201 PIT-RRQDHDIMLFTFSKITGHAG-SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESEN  278 (391)
T ss_dssp             CCC-CCBCCSEEEEEHHHHHSCGG-GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTS
T ss_pred             ccc-cCCCCeEEEEechhhcCCCc-cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHH
Confidence            111 12344556667999998 88 99999997 88888777654333456778899998888887642         1 


Q ss_pred             --ccHHHHHHHHHHHHHHHhhccccc-CCCc-cc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         160 --ENMIENAYKMGEIFRSELSSPANK-SKAS-FK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       160 --~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                        +.++++++++++.+.+.|++ ++. .... ..         .+..|+   ++|+.+++  .   +.+.+.|.++||.+
T Consensus       279 ~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~---~~~~~~~~--~---~~~~~~l~~~gV~v  349 (391)
T 3bwn_A          279 FFKYGREMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPA---FAWLGTKE--E---TDLVSELRRHKVMS  349 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCS---EEEEEESS--S---CCHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcce---EEEecCCc--H---HHHHHHHHHCCEEE
Confidence              34677788888889999888 531 1110 00         123456   78888865  1   34667778999999


Q ss_pred             ccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 KPI-----SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .|+     +.+++|+++.  .+++++++++++|.+++++
T Consensus       350 ~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          350 RAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             EEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred             ccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            985     2579999955  5899999999999887654

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.74  E-value=9.4e-18  Score=146.24  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=146.5

Q ss_pred             CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      .++.+++.++.+|++++++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+||+|+.. ....+  
T Consensus       129 ~~g~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~G~~~----~l~~i~~la~~~g~~livDe~~~~~-~~~~~--  199 (400)
T 3nmy_A          129 TAGLDFSFVDLTDPAAFKAAI--RADTKMVWIETPTNPMLKLV----DIAAIAVIARKHGLLTVVDNTFASP-MLQRP--  199 (400)
T ss_dssp             HHCCEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTHH-HHCCG--
T ss_pred             hcCeEEEEECCCCHHHHHHHh--ccCCCEEEEECCCCCCCeee----cHHHHHHHHHHcCCEEEEECCCccc-ccCCh--
Confidence            357889999999999999999  45799999999999999886    6999999999999999999999521 11111  


Q ss_pred             cccCCCCcCeeeecccccCCchhhhh--he-ecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGLYPISA--VL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~~~~g~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                       ..++.++.+.+++|+++|+..++|+  ++ .++++.+.+...........+++.+..+...++.+.  ...++..++..
T Consensus       200 -~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~  276 (400)
T 3nmy_A          200 -LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP--LRMRAHCENAL  276 (400)
T ss_dssp             -GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHH
T ss_pred             -hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHH
Confidence             1235566666699999943255554  33 466776666543344445667777777666665432  23455566777


Q ss_pred             HHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------
Q psy6547         172 IFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------  229 (266)
Q Consensus       172 ~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------  229 (266)
                      .+.+.|++ .+.      +.++.         ..++.|.   +++|+++.. ......|++.|.-.++.+..+       
T Consensus       277 ~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~---~~~~~l~~~-~~~~~~~~~~l~~~~~~~s~G~~~sl~~  351 (400)
T 3nmy_A          277 ALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGG---IVSIVLKGG-FDAAKRFCEKTELFTLAESLGGVESLVN  351 (400)
T ss_dssp             HHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEETTH-HHHHHHHHHHCSSSEECSCCCSSSCEEE
T ss_pred             HHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCc---eEEEEeCCc-HHHHHHHHHcCCcceEecCCCCCcceee
Confidence            77777765 221      11111         0145688   999999651 123556666665333222211       


Q ss_pred             --------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         230 --------------------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       230 --------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                          ..+.+|+|......    +.+++.|+++++
T Consensus       352 ~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~----~dli~dl~~al~  397 (400)
T 3nmy_A          352 HPAVMTHASIPVARREQLGISDALVRLSVGIEDL----GDLRGDLERALV  397 (400)
T ss_dssp             CTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHC
T ss_pred             CccccccccCCHHHHHhcCCCcCeEEEEeCcCCH----HHHHHHHHHHHh
Confidence                                24789999766544    445555666554

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.74  E-value=2.4e-17  Score=144.65  Aligned_cols=225  Identities=15%  Similarity=0.140  Sum_probs=146.7

Q ss_pred             CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc
Q psy6547          14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~   86 (266)
                      ...+.+++.++.+      |+++|++.+  .+++++|++++   ++|...    ++++|.++|+++|+++|+||+|+ |+
T Consensus       108 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~  178 (424)
T 2po3_A          108 RWIGLTPVFADIDPDTGNLDPDQVAAAV--TPRTSAVVGVH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGC  178 (424)
T ss_dssp             HHTTCEEEEECBCTTTSSBCHHHHGGGC--CTTEEEEEEEC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred             HHcCCEEEEEecCCCcCCcCHHHHHHhh--CcCCcEEEEEC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCC
Confidence            3346677777654      789999888  34688888754   455543    99999999999999999999997 55


Q ss_pred             CCcCcccccccCCCCcCeee--ec--ccccCCchhhhhheec-HHhhhccCCCC------------CCCCCCCcHHHHHH
Q psy6547          87 GRTGKLLAIHYEDVRPDIVI--LG--KALSGGLYPISAVLAD-DEVMGTLVPGT------------HGSTYGGNPLACKL  149 (266)
Q Consensus        87 ~~~g~~~~~~~~~~~~d~~~--~s--K~~~~g~~~~g~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~a  149 (266)
                      ...|..  .   +..+|+++  +|  |++++  .++|+++++ +++.+.+....            .+.++..+++.+++
T Consensus       179 ~~~~~~--~---~~~~di~~~S~sk~K~l~~--~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  251 (424)
T 2po3_A          179 AVDGRP--A---GSLGDAEVFSFHATKAVNA--FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAM  251 (424)
T ss_dssp             EETTEE--T---TSSSSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHH
T ss_pred             eECCee--c---ccccCEEEEeCCCCCCccC--CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHH
Confidence            433321  1   11235555  55  76655  589999998 67765543210            11122345566655


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEe-c--CccceeeEEEEeeCc-cchHHHHHHHHHHCCc
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPAN-KSKASFKLSS-G--GLKKSINTLILSVSA-ILEVYDVCIKMKDAGL  224 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-~--g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi  224 (266)
                      +...++.+  +.+.++.+++.+++++.|.+ +. ...... ..+ .  ..   ++++.+++.. +.+..++.+.|.++||
T Consensus       252 ~l~~~~~~--~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~L~~~gI  324 (424)
T 2po3_A          252 GLTSLDAF--PEVIDRNRRNHAAYREHLAD-LPGVLVADH-DRHGLNNHQ---YVIVEIDEATTGIHRDLVMEVLKAEGV  324 (424)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHTCS-CTTEEECCG-GGGSCCCCC---CEEEEECHHHHSSCHHHHHHHHHHTTE
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCCccccCC-CCCCccccE---EEEEEECCccchhhHHHHHHHHHHCCC
Confidence            55544433  34677777888888888877 42 111111 111 1  13   5556665300 2357889999999999


Q ss_pred             eeccCCC-------------------------CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPISN-------------------------NIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~~~~-------------------------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+++...                         ..+|++++..++++++++++++|.+++++.
T Consensus       325 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          325 HTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             ECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            9986311                         128888789999999999999999987664

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.73  E-value=1.1e-17  Score=145.72  Aligned_cols=202  Identities=9%  Similarity=0.070  Sum_probs=140.1

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee--ecccccCCc
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGL  115 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~  115 (266)
                      .+++++|++++++|++|.+. +.   ++|.++   +|+++|+||+|+.+..   .....  +  +|+++  +||+++++ 
T Consensus       163 ~~~~~~v~~~~~~nptG~~~-~~---~~i~~~---~~~~vivD~a~~~~~~---~~~~~--~--~di~~~s~sK~~~~~-  227 (398)
T 2fyf_A          163 DPSVDVIAWAHNETSTGVAV-AV---RRPEGS---DDALVVIDATSGAGGL---PVDIA--E--TDAYYFAPQKNFASD-  227 (398)
T ss_dssp             CTTCSEEEEESEETTTTEEC-CC---CCCTTC---C-CEEEEECTTTTTTS---CCCGG--G--CSEEEECTTSTTCSC-
T ss_pred             cCCCCEEEEeCcCCCcceec-ch---HHhhhh---cCCeEEEEeccccCCc---ccCcc--c--CcEEEEecCcccCCC-
Confidence            44688998888889899874 44   444444   8999999999964421   11121  2  45555  67999955 


Q ss_pred             hhhhhheecHHhhhccCC----------CC-----------CCCCCCCcHHHHHHHHHHHHHHhh----ccHHHHHHHHH
Q psy6547         116 YPISAVLADDEVMGTLVP----------GT-----------HGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMG  170 (266)
Q Consensus       116 ~~~g~~~~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~  170 (266)
                      .++|++++++++.+.++.          ..           .....+.+..++.++.++++.+..    +++.+++++++
T Consensus       228 gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          228 GGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             SSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             CceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            358999999888765521          00           122235566677777788876554    34677888889


Q ss_pred             HHHHHHhhcccc-cCCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccCCCCH
Q psy6547         171 EIFRSELSSPAN-KSKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITE  244 (266)
Q Consensus       171 ~~l~~~l~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~~~t~  244 (266)
                      +++.+.|++ +. ........ ...+.   ++++.+++  +.+..+++++|.++||.++++    +.+++|++++..+++
T Consensus       308 ~~l~~~L~~-~~g~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~  381 (398)
T 2fyf_A          308 QRLYSWAQE-RPYTTPFVTDPGLRSQV---VGTIDFVD--DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEP  381 (398)
T ss_dssp             HHHHHHHHH-STTEEESCCSGGGBCSS---EEEEEECT--TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCH
T ss_pred             HHHHHHHHH-cCCceeccCChhhcCCc---EEEEECCC--CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCH
Confidence            999999987 52 21111001 01344   78888865  567889999999999999864    247899999888899


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         245 QELREGLDIIINTINT  260 (266)
Q Consensus       245 ~~i~~~~~~l~~~~~~  260 (266)
                      +++++++++|++++++
T Consensus       382 e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          382 DDVSALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.72  E-value=8e-17  Score=144.86  Aligned_cols=230  Identities=13%  Similarity=0.058  Sum_probs=148.1

Q ss_pred             CceeecCC-----CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.+|.+     |+++|+++++++    .++++|+++..++++|.+.    ++++|+++|++||+++++|++|+++...
T Consensus       229 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~----~l~~I~~la~~~g~~l~vD~a~~~~~~~  304 (515)
T 2jis_A          229 SVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD----PLEAIADVCQRHGLWLHVDAAWGGSVLL  304 (515)
T ss_dssp             GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc----CHHHHHHHHHHcCCeEEEehhhhhHHHh
Confidence            78888864     799999999652    2588999988888889875    7999999999999999999999765333


Q ss_pred             CcccccccCCC-CcCeeee--cccccCCchhhhhheecHH--hhhcc----CCCCCC-----------CCC------CCc
Q psy6547          90 GKLLAIHYEDV-RPDIVIL--GKALSGGLYPISAVLADDE--VMGTL----VPGTHG-----------STY------GGN  143 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~~--sK~~~~g~~~~g~~~~~~~--~~~~~----~~~~~~-----------~~~------~~~  143 (266)
                      ...+.....++ .+|++++  +|+++++ ++.|+++++++  +++..    ..+...           .++      ...
T Consensus       305 ~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~  383 (515)
T 2jis_A          305 SQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD  383 (515)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred             ChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence            22222223344 5777775  8999877 78899888765  54431    111100           001      111


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC--cc----ch-----
Q psy6547         144 PLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS--AI----LE-----  211 (266)
Q Consensus       144 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~--~~----~~-----  211 (266)
                      .+.+.+++.++....-+++.++..++++++.+.|++ +.. ..+..   ....   .+.|.....  .+    .+     
T Consensus       384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~---~~~~---~v~f~~~p~~~~~~~~~~~~~~~l  456 (515)
T 2jis_A          384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGFELVME---PEFV---NVCFWFVPPSLRGKQESPDYHERL  456 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEESSC---CSSS---EEEEEECCGGGTTCTTSTTHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCC---CCee---EEEEEEeCccccccccchhHHHHH
Confidence            333444444443222245778888899999999988 432 21211   1122   455544211  00    01     


Q ss_pred             ---HHHHHHHHHHCCceecc-----CCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHH
Q psy6547         212 ---VYDVCIKMKDAGLVTKP-----ISNNIIRLSP-ALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       212 ---~~~~~~~l~~~gi~~~~-----~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                         ...+.+.|.++|+....     ...+++|+++ +..+|++|+++++++|++++++
T Consensus       457 ~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          457 SKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             HTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence               12367788888976532     2246899999 7889999999999999987654

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.72  E-value=1.2e-17  Score=147.61  Aligned_cols=201  Identities=10%  Similarity=-0.040  Sum_probs=136.6

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC-CcCcccccccCCCCcCeee--ecccccCC
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKLLAIHYEDVRPDIVI--LGKALSGG  114 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~-~~g~~~~~~~~~~~~d~~~--~sK~~~~g  114 (266)
                      +++++++++++ ++++|.+.    ++++|.++|++||+++|+||+|+++. ..+..+.....  .+|+++  ++|+++++
T Consensus       144 ~~~~~~v~~~~-~n~~G~~~----~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~  216 (446)
T 2x3l_A          144 NDGHKLVVLTY-PNYYGETF----NVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNY--QADYVVQSFHKTLPAL  216 (446)
T ss_dssp             ---CCEEEEES-SCTTSCCC----CHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGG--TCSEEEECHHHHSSSC
T ss_pred             CCCceEEEEEC-CCCCeEec----CHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHc--CCCEEEECCccccccc
Confidence            45678888887 56688875    68999999999999999999997522 22222222223  356666  55998877


Q ss_pred             chhhhhheecHHhhh--ccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhc--c-HHHHHHHHHHHHHHHhhcccccCCCcc
Q psy6547         115 LYPISAVLADDEVMG--TLVP-GTHGSTYGGNPLACKLAMTALDVILEE--N-MIENAYKMGEIFRSELSSPANKSKASF  188 (266)
Q Consensus       115 ~~~~g~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~--~-~~~~~~~~~~~l~~~l~~~~~~~~~~~  188 (266)
                       .++|++++++++++  .+.. .....+.+++...+++..++++.++..  + +.++.+++.++++++  .      +..
T Consensus       217 -~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g------~~~  287 (446)
T 2x3l_A          217 -TMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G------FEM  287 (446)
T ss_dssp             -TTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T------CEE
T ss_pred             -cccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C------CEE
Confidence             67899988776543  2211 012234455666666666777777653  2 677777777777666  1      111


Q ss_pred             cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         189 KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       189 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .....+.   .+++.++   +.+..++.+.|.++||.+...+.+++|++++..+|++++ +++++|+++++..
T Consensus       288 ~~~~~~~---~l~i~~~---~~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          288 LQVDDPL---KLLIKYE---GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             EECSSTT---EEEEECT---TSCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             CcCCCCe---EEEEEeC---CcCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            0011234   6777764   246788999999999999844568999999988899999 9999999987654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.72  E-value=3e-17  Score=141.29  Aligned_cols=217  Identities=17%  Similarity=0.142  Sum_probs=146.5

Q ss_pred             CCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cC
Q psy6547          15 PHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LG   87 (266)
Q Consensus        15 ~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~   87 (266)
                      ..+.+++.++.+      |+++|++++  .+++++|++++   ++|...    ++++|.++|++||+++|+|++|+. ..
T Consensus        94 ~~G~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~---~~G~~~----~~~~i~~la~~~~~~li~D~a~~~g~~  164 (367)
T 3nyt_A           94 LLGAKPVYVDIDPRTYNLDPQLLEAAI--TPRTKAIIPVS---LYGQCA----DFDAINAIASKYGIPVIEDAAQSFGAS  164 (367)
T ss_dssp             HTTCEEEEECBCTTTCSBCGGGTGGGC--CTTEEEECCBC---GGGCCC----CHHHHHHHHHHTTCCBEEECTTTTTCE
T ss_pred             HcCCEEEEEecCCccCCcCHHHHHHhc--CcCCcEEEeeC---CccChh----hHHHHHHHHHHcCCEEEEECccccCCe
Confidence            345667777643      789999998  45788888443   456554    899999999999999999999952 21


Q ss_pred             CcCcccccccCCCCcCeeeec----ccccC-Cchhhhhhee-cHHhhhccCCC------------CCCCCCCCcHHHHHH
Q psy6547          88 RTGKLLAIHYEDVRPDIVILG----KALSG-GLYPISAVLA-DDEVMGTLVPG------------THGSTYGGNPLACKL  149 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~s----K~~~~-g~~~~g~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~a  149 (266)
                      ..|.     ..+...|++++|    |.+++ | . .|+++. ++++.+.+...            ..+.++..+++.+++
T Consensus       165 ~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~  237 (367)
T 3nyt_A          165 YKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAI  237 (367)
T ss_dssp             ETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHH
T ss_pred             ECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHH
Confidence            1122     112222777765    99997 7 4 777777 45665544321            113467788888888


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCc--ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANKSKAS--FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  227 (266)
                      +...++.+  ++..++.+++.+++++.|++ ++.....  ........   ++.+..+     +.+++.+.|.++||.++
T Consensus       238 ~~~~l~~~--~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~l~~~L~~~GI~~~  306 (367)
T 3nyt_A          238 LLPKLEIF--EEEIALRQKVAAEYDLSLKQ-VGIGTPFIEVNNISVYA---QYTVRMD-----NRESVQASLKAAGVPTA  306 (367)
T ss_dssp             HHHHHHTH--HHHHHHHHHHHHHHHHHHHH-TTCCCCCCCTTEECCCS---SEEEECS-----SHHHHHHHHHHHTCCCB
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCeeccCCCCCCceeeE---EEEEEeC-----CHHHHHHHHHHCCCcee
Confidence            88777654  44677788888899999988 5421111  10111112   2333332     47789999999999887


Q ss_pred             cCC------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         228 PIS------------------------NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       228 ~~~------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +..                        ...+|+.++...|++|++++++.|.+.-
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~  361 (367)
T 3nyt_A          307 VHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNLE  361 (367)
T ss_dssp             CSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC--
T ss_pred             ccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            432                        1578999999999999999999998653

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.71  E-value=2.6e-16  Score=136.79  Aligned_cols=228  Identities=14%  Similarity=0.152  Sum_probs=148.5

Q ss_pred             CCCCCCceeecC-----CCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc
Q psy6547          14 GPHMPGYNIIPY-----NDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL   86 (266)
Q Consensus        14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~   86 (266)
                      ...+.+++.++.     .|+++|++.+++.+ ++++|++++   ++|..    .++++|.++|+++|+++|+||+|+ |+
T Consensus        90 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~----~~l~~i~~l~~~~~~~li~Dea~~~g~  162 (394)
T 1o69_A           90 CYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNA----AKMDEIVEICKENDIVLIEDAAEALGS  162 (394)
T ss_dssp             HHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCC----CCHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred             HHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCCh----hhHHHHHHHHHHcCCEEEEECcCcccc
Confidence            335667777774     37999999996532 578888876   34544    399999999999999999999997 54


Q ss_pred             CCcCcccccccCCCCcCeeee--cccccCCchhhhhheec-HHhhhccCCCCC-C-------------CCCCCcHHHHHH
Q psy6547          87 GRTGKLLAIHYEDVRPDIVIL--GKALSGGLYPISAVLAD-DEVMGTLVPGTH-G-------------STYGGNPLACKL  149 (266)
Q Consensus        87 ~~~g~~~~~~~~~~~~d~~~~--sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~-~-------------~~~~~~~~~~~a  149 (266)
                      ...|...  ..++ .+++.++  +|.++ | .++|+++++ +++.+.+..... .             ..+..+++.+++
T Consensus       163 ~~~~~~~--~~~~-~~~~~s~s~~K~l~-~-~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  237 (394)
T 1o69_A          163 FYKNKAL--GTFG-EFGVYSYNGNKIIT-T-SGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAI  237 (394)
T ss_dssp             EETTEET--TSSS-SEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHH
T ss_pred             eeCCccc--cccc-CcEEEEEeCCccCC-C-CCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHH
Confidence            3333211  1111 3677777  56665 4 579999995 676655532110 0             111145566655


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCccc--EEecCccceeeEEEEeeCc-------------------
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFK--LSSGGLKKSINTLILSVSA-------------------  208 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~-------------------  208 (266)
                      +...++.++  +..++++++.+++++.|++ + ....+..  ..+...   ++++.++...                   
T Consensus       238 ~l~~l~~l~--~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  310 (394)
T 1o69_A          238 GVAQMEVLE--QRVLKKREIYEWYKEFLGE-Y-FSFLDELENSRSNRW---LSTALINFDKNELNACQKDINISQKNITL  310 (394)
T ss_dssp             HHHHHTTHH--HHHHHHHHHHHHHHHHHTT-T-EECCCCCTTEECCCS---SEEEEESCCGGGSCCCCEEEECCCCCCCC
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHhcc-c-ccccCCCCCCcceeE---EEEEEecchhhcccccccccccccccccc
Confidence            555554433  3678888899999999988 4 2121110  011111   4667765310                   


Q ss_pred             cchHHHHHHHHHHCCceeccCCC------------------------CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         209 ILEVYDVCIKMKDAGLVTKPISN------------------------NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       209 ~~~~~~~~~~l~~~gi~~~~~~~------------------------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +.+..++.+.|.++||.++++..                        ..+++..+..+|++|++++++.|++++..
T Consensus       311 ~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          311 HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            13678899999999999986510                        34566667889999999999999987654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.70  E-value=2.9e-17  Score=143.76  Aligned_cols=227  Identities=11%  Similarity=-0.017  Sum_probs=145.1

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCcCCcCc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~De~~~~~~~~g~   91 (266)
                      ..++.+++.++.+|+++|++++  .+++++|+++.++|++|.+.    ++++|.++|++  +|+++|+|++|... ..+.
T Consensus       143 ~~~G~~v~~v~~~d~~~le~ai--~~~tklV~~e~~~NptG~v~----dl~~I~~la~~~~~g~~livD~a~a~~-~~~~  215 (415)
T 2fq6_A          143 SKLGVTTSWFDPLIGADIVKHL--QPNTKIVFLESPGSITMEVH----DVPAIVAAVRSVVPDAIIMIDNTWAAG-VLFK  215 (415)
T ss_dssp             GGGTCEEEEECTTCGGGGGGGC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHCTTCEEEEECTTTTT-TSSC
T ss_pred             HHcCcEEEEECCCCHHHHHHhh--ccCCcEEEEECCCCCCCEee----cHHHHHHHHHhhcCCCEEEEECCCccc-ccCC
Confidence            3457889999999999999999  45799999999999999987    79999999999  99999999999532 1122


Q ss_pred             ccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  170 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  170 (266)
                      +.   .++.+.-+.+++|.++++. ..+|++++++++.+.+...........++..+..+..+++.+.  ...++..++.
T Consensus       216 p~---~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~--~r~~~~~~n~  290 (415)
T 2fq6_A          216 AL---DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHHESS  290 (415)
T ss_dssp             GG---GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             cc---ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHH
Confidence            21   2344444445889999531 2368888887776655432111112345555555555555432  2344445566


Q ss_pred             HHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeC-ccchHHHHHHHHHHCCceec-------
Q psy6547         171 EIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVS-AILEVYDVCIKMKDAGLVTK-------  227 (266)
Q Consensus       171 ~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~-------  227 (266)
                      ..+.+.|++ ..      .+.+...         ..+.|.   +++|.++.. +..+...|...|.-.++.++       
T Consensus       291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~---i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~  366 (415)
T 2fq6_A          291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSG---LFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESL  366 (415)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCS---EEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCE
T ss_pred             HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCce---EEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCcee
Confidence            666676665 21      1111110         013466   899998751 01245556655543232221       


Q ss_pred             -----c-------------CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         228 -----P-------------ISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       228 -----~-------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                           |             ...+.+|+|++..+++++++.+.+.|++
T Consensus       367 ~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          367 ILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             EEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             EEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence                 1             0247899999999988888888887764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.70  E-value=2.2e-16  Score=138.59  Aligned_cols=221  Identities=15%  Similarity=0.090  Sum_probs=140.8

Q ss_pred             CCCCCceee-cCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          15 PHMPGYNII-PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        15 ~~~~~v~~~-~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..+.+++.+ +.+|++++++++  .+++++|++++++|++|.+.    ++++|+++|++||+++|+|++|++++..+..+
T Consensus       120 ~~g~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~n~~G~~~----~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~  193 (421)
T 2ctz_A          120 RLGIEVRFTSREERPEEFLALT--DEKTRAWWVESIGNPALNIP----DLEALAQAAREKGVALIVDNTFGMGGYLLRPL  193 (421)
T ss_dssp             HTTCEEEECCTTCCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG
T ss_pred             HcCCEEEEECCCCCHHHHHHhh--ccCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCcccccccCCcc
Confidence            356788889 888999999999  45799999999999999886    59999999999999999999995454433332


Q ss_pred             ccccCCCCcCee--eecccccC-CchhhhhheecH---Hh----hhccCCC---CCC-----------------------
Q psy6547          94 AIHYEDVRPDIV--ILGKALSG-GLYPISAVLADD---EV----MGTLVPG---THG-----------------------  137 (266)
Q Consensus        94 ~~~~~~~~~d~~--~~sK~~~~-g~~~~g~~~~~~---~~----~~~~~~~---~~~-----------------------  137 (266)
                           +..+|++  +++|++++ | .++|++++..   ++    .+.+...   .+.                       
T Consensus       194 -----~~~~Di~~~s~~K~l~~~g-~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~  267 (421)
T 2ctz_A          194 -----AWGAALVTHSLTKWVGGHG-AVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRD  267 (421)
T ss_dssp             -----GGTCSEEEEETTTTTTCSS-CCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHH
T ss_pred             -----ccCCeEEEECCcccccCCC-CcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHh
Confidence                 2346666  68999995 6 6888877641   11    1112110   000                       


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc------CCCcccE----------EecCccceeeE
Q psy6547         138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK------SKASFKL----------SSGGLKKSINT  201 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~----------~~~g~~~~~~~  201 (266)
                      .....+++.+.++...++.+.  ...++..++.+++.+.|++ ...      +.....+          ++.|.   ++.
T Consensus       268 ~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~---ivs  341 (421)
T 2ctz_A          268 QGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGA---VLT  341 (421)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCS---EEE
T ss_pred             cCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCce---EEE
Confidence            112456666666665555432  2344455677788888876 321      1111000          24566   999


Q ss_pred             EEEeeCccchHHHHHHHHHHCCceeccC---------------------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         202 LILSVSAILEVYDVCIKMKDAGLVTKPI---------------------------SNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------------------~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      |.+... ..+...+.+.|...++.++.+                           ..+.+|+|++.    ++++++++.|
T Consensus       342 f~l~~~-~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l  416 (421)
T 2ctz_A          342 FGLKGG-YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAEL  416 (421)
T ss_dssp             EEETTH-HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHH
T ss_pred             EEeCCC-HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHH
Confidence            998651 123455555554444333221                           14799999654    4677777777


Q ss_pred             HHHH
Q psy6547         255 INTI  258 (266)
Q Consensus       255 ~~~~  258 (266)
                      ++++
T Consensus       417 ~~al  420 (421)
T 2ctz_A          417 KEAL  420 (421)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7664

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.68  E-value=1.7e-16  Score=139.02  Aligned_cols=229  Identities=10%  Similarity=0.069  Sum_probs=143.4

Q ss_pred             CCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC-
Q psy6547          15 PHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-   87 (266)
Q Consensus        15 ~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~-   87 (266)
                      -.+.+++.++.+      |+++|++.+  .+++++|++++   ++|...    ++++|.++|++||+++|+||+|+.+. 
T Consensus       101 ~~g~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~---~~G~~~----~~~~i~~~~~~~~~~li~D~a~~~~~~  171 (418)
T 2c81_A          101 NVNALPVFVDVEADTYCIDPQLIKSAI--TDKTKAIIPVH---LFGSMA----NMDEINEIAQEHNLFVIEDCAQSHGSV  171 (418)
T ss_dssp             HTTCEEEEECBCTTTCSBCHHHHGGGC--CTTEEEECCBC---CTTCCC----CHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred             HcCCEEEEEecCCCCCCcCHHHHHHhh--CCCCeEEEEeC---CcCCcc----cHHHHHHHHHHCCCEEEEECcccccCc
Confidence            345667777654      789999988  34688888654   466654    89999999999999999999997653 


Q ss_pred             CcCcccccccCCCCcCeeee--cccccCCchhhhhheec-HHhhhccCCCC-C--------------CC-------CC--
Q psy6547          88 RTGKLLAIHYEDVRPDIVIL--GKALSGGLYPISAVLAD-DEVMGTLVPGT-H--------------GS-------TY--  140 (266)
Q Consensus        88 ~~g~~~~~~~~~~~~d~~~~--sK~~~~g~~~~g~~~~~-~~~~~~~~~~~-~--------------~~-------~~--  140 (266)
                      ..+..  ...++ +.++.++  ||++++|  ++|+++++ +++.+.+.... .              ..       ..  
T Consensus       172 ~~~~~--~~~~~-~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (418)
T 2c81_A          172 WNNQR--AGTIG-DIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGS  246 (418)
T ss_dssp             ETTEE--TTSSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCC
T ss_pred             cCCEe--ccccc-ceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCc
Confidence            12221  11111 2445556  8999875  68998884 66655443110 0              00       00  


Q ss_pred             --CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccc-eeeEEEEeeC--ccchHHH
Q psy6547         141 --GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKK-SINTLILSVS--AILEVYD  214 (266)
Q Consensus       141 --~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~--~~~~~~~  214 (266)
                        ..+++..+.....++.+  ++..++.+++.+++.+.|++ +.. ..... ..+.+... +++.+.+++.  .+.+..+
T Consensus       247 ~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (418)
T 2c81_A          247 NYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSK-IDGIKVMKR-PPQVSRQTYYGYVFRFDPVKFGGLNADQ  322 (418)
T ss_dssp             BCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT-STTEEECCC-CTTEEECCCSEEEEEECGGGTTTCCHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCCcccCCC-CCCCcccccEEEEEEEccccccccCHHH
Confidence              12333333322223222  34667777788888888877 421 11111 11101100 1344566520  0346789


Q ss_pred             HHHHHHHC-Cce---eccCC----------------------------------------CCEEEEeccCCC-CHHHHHH
Q psy6547         215 VCIKMKDA-GLV---TKPIS----------------------------------------NNIIRLSPALNI-TEQELRE  249 (266)
Q Consensus       215 ~~~~l~~~-gi~---~~~~~----------------------------------------~~~iR~~~~~~~-t~~~i~~  249 (266)
                      +++.|.++ ||.   ++++.                                        .+.+|++++..+ |++|+++
T Consensus       323 l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~  402 (418)
T 2c81_A          323 FCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSL  402 (418)
T ss_dssp             HHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHH
T ss_pred             HHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHH
Confidence            99999999 999   76431                                        148999999999 9999999


Q ss_pred             HHHHHHHHHHHH
Q psy6547         250 GLDIIINTINTM  261 (266)
Q Consensus       250 ~~~~l~~~~~~~  261 (266)
                      +++.|+++++++
T Consensus       403 ~~~~l~~~~~~~  414 (418)
T 2c81_A          403 LVDAVAELARKF  414 (418)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.67  E-value=2e-16  Score=141.11  Aligned_cols=215  Identities=13%  Similarity=0.092  Sum_probs=141.4

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc-cccccCCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL-LAIHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~-~~~~~~~~~~d  103 (266)
                      .|+++|++++++ +++++|++ ..++++ .+.    ++++|+++|+++|+++++|++|. |+...|.. ..+.  +  .|
T Consensus       180 iD~d~le~~i~~-~~tklIi~-~~sn~~-~~~----dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--~--~d  248 (483)
T 1rv3_A          180 IDYDRLEENARL-FHPKLIIA-GTSCYS-RNL----DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--H--CH  248 (483)
T ss_dssp             BCHHHHHHHHHH-HCCSEEEE-CCSSCC-SCC----CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--T--CS
T ss_pred             CCHHHHHHHHhh-cCCcEEEE-eCCcCC-CcC----CHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--C--Cc
Confidence            379999999953 35788888 555555 443    69999999999999999999984 32111211 1111  2  45


Q ss_pred             eee--ecccccCCchhhhhheecHHhh---------------hccCCC-CCCCCCCCcHHHHHHHHHHHHHHhh---ccH
Q psy6547         104 IVI--LGKALSGGLYPISAVLADDEVM---------------GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENM  162 (266)
Q Consensus       104 ~~~--~sK~~~~g~~~~g~~~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~---~~~  162 (266)
                      +++  ++|+|+ | ++.|++++++++.               +.+... ......+++...+++...+++....   +++
T Consensus       249 iv~~s~~K~l~-G-prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~  326 (483)
T 1rv3_A          249 VVTTTTHKTLR-G-CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEY  326 (483)
T ss_dssp             EEEEESSGGGC-C-CSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             EEEecCcccCC-C-CCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHH
Confidence            554  779995 4 6789999876421               111110 0111223344455555667766543   457


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC-----CCCE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI-----SNNI  233 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~  233 (266)
                      .+++.++++++.+.|.+ ++...+..  .....   ++++.+... +.+..++.+.|.+.||.+.    |+     +.++
T Consensus       327 ~~~~~~~~~~l~~~L~~-~g~~~~~~--~~~~~---~~~v~~~~~-g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~  399 (483)
T 1rv3_A          327 QRQVVANCRALSAALVE-LGYKIVTG--GSDNH---LILVDLRSK-GTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG  399 (483)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCEEGGG--SCSSS---EEEEEGGGG-TCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHh-cCCEeccC--CCCCc---eEEEeccCC-CCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCce
Confidence            88888999999999987 43221111  00123   666766531 3467788889999999998    64     2479


Q ss_pred             EEEeccCCCC----HHHHHHHHHHHHHHHHH
Q psy6547         234 IRLSPALNIT----EQELREGLDIIINTINT  260 (266)
Q Consensus       234 iR~~~~~~~t----~~~i~~~~~~l~~~~~~  260 (266)
                      +|++++..+|    ++++++++++|.++++.
T Consensus       400 iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          400 LRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             EEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            9999886556    99999999999998876

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.67  E-value=4.6e-15  Score=132.30  Aligned_cols=234  Identities=11%  Similarity=0.089  Sum_probs=148.2

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      +.+++.+|.+     |+++|+++|+++.    .+.+++++...+++|.+-    ++++|+++|++||+++++|++|.+..
T Consensus       209 g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id----~l~~I~~la~~~~~~lhvDaA~g~~~  284 (481)
T 4e1o_A          209 LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFD----CLSELGPICAREGLWLHIDAAYAGTA  284 (481)
T ss_dssp             TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTGGGG
T ss_pred             CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcC----CHHHHHHHHHHcCCeEEeehhhHHHH
Confidence            4567777754     8999999996531    266677777777788774    89999999999999999999996542


Q ss_pred             CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecH-Hhhh-ccCCC---CC----CC-------CC-CCcHHHH
Q psy6547          88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMG-TLVPG---TH----GS-------TY-GGNPLAC  147 (266)
Q Consensus        88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~~-~~~~~---~~----~~-------~~-~~~~~~~  147 (266)
                      ..+..+.....++ ..|.++  .+|++++. ...|+++.+. ..+. .+...   ..    ..       +. .+.+...
T Consensus       285 ~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~  363 (481)
T 4e1o_A          285 FLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRS  363 (481)
T ss_dssp             GGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTH
T ss_pred             HhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccH
Confidence            2222222112233 246555  67999866 5667666644 3332 22110   00    00       00 1111122


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .....+++.+..   +++.++..++++++++.|++ ++. ..+.   .....   ++.|.+... .....++.++|.++|
T Consensus       364 l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~---~~~~~---~v~f~~~~~-~~~~~~l~~~L~~~g  435 (481)
T 4e1o_A          364 VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-DPSFEIPA---KRHLG---LVVFRLKGP-NSLTENVLKEIAKAG  435 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEECCS---CCCSS---EEEEEESSC-HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEec---CCcee---EEEEEeCCc-hHHHHHHHHHHHhCC
Confidence            233344444333   45677888899999999988 532 2221   12233   788887542 234678999999888


Q ss_pred             cee-cc---CCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         224 LVT-KP---ISNNIIRLSPA-LNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       224 i~~-~~---~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                      +++ .+   .+..++|+++. ...|++|+++++++|+++++++.+
T Consensus       436 ~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~  480 (481)
T 4e1o_A          436 RLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS  480 (481)
T ss_dssp             SSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            543 33   24568999965 445899999999999999887654

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.67  E-value=8.8e-16  Score=134.87  Aligned_cols=220  Identities=17%  Similarity=0.112  Sum_probs=139.3

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      ..++.+++.++.+|+++|++++  .+++++|++++++|++|.+.    ++++|+++|+++|+++|+|++|+..    ...
T Consensus       143 ~~~G~~~~~v~~~d~~~l~~ai--~~~t~~v~~e~p~NptG~~~----dl~~i~~la~~~g~~livD~a~~~~----~~~  212 (430)
T 3ri6_A          143 PSFGIEVRFVDVMDSLAVEHAC--DETTKLLFLETISNPQLQVA----DLEALSKVVHAKGIPLVVDTTMTPP----YLL  212 (430)
T ss_dssp             HHTTCEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHTTTCCEEEECTTSCT----TTC
T ss_pred             HHcCCEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCccc----ccC
Confidence            4567889999999999999999  45799999999999999886    7999999999999999999999522    112


Q ss_pred             ccccCCCCcCeeeecccccCCchhhhh-hee--cHHh------------------hhccCC-CCCCCCCCCcHHHHHHHH
Q psy6547          94 AIHYEDVRPDIVILGKALSGGLYPISA-VLA--DDEV------------------MGTLVP-GTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        94 ~~~~~~~~~d~~~~sK~~~~g~~~~g~-~~~--~~~~------------------~~~~~~-~~~~~~~~~~~~~~~a~~  151 (266)
                      ....+|.+..+.+++|+++|+-..+|. ++.  +..+                  .+.+.. .........++..+..+.
T Consensus       213 ~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l  292 (430)
T 3ri6_A          213 EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQS  292 (430)
T ss_dssp             CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred             ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            222345666666799999853133444 442  2111                  111110 001111234566665555


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEe------------------cCccceeeEEEEeeCccchHH
Q psy6547         152 TALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS------------------GGLKKSINTLILSVSAILEVY  213 (266)
Q Consensus       152 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~~~~~~  213 (266)
                      ..++.+.  ...++..+++..+.+.|++ .+  .+.. +.-                  .|.   +++|+++.  ..++.
T Consensus       293 ~~l~~l~--~r~~~~~~na~~la~~L~~-~p--~v~~-V~~P~l~~~p~~~~~~~~~g~Gg~---~lsf~l~~--~~~~~  361 (430)
T 3ri6_A          293 LGLETMA--LRIERSCQNAQELAHWLLS-IP--QVKC-VNHPSLPDSPFYAIAKRQFRYAGS---ILTFELES--KEASY  361 (430)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHTT-CT--TCEE-EECTTSTTSTTHHHHHHHCSSCCS---EEEEECSS--HHHHH
T ss_pred             hhhhhHH--HHHHHHHHHHHHHHHHHhC-CC--CccE-EECCCCCCCccHHHHHHhCCCCce---EEEEEECC--HHHHH
Confidence            5555432  2345556777777777776 32  1211 111                  233   79999975  55677


Q ss_pred             HHHHHHHHCCceeccC---------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         214 DVCIKMKDAGLVTKPI---------------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       214 ~~~~~l~~~gi~~~~~---------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +|.+.|.-.++.+.++                           ..+.||+|+..    |+.+.+++.|++++
T Consensus       362 ~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al  429 (430)
T 3ri6_A          362 RFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL  429 (430)
T ss_dssp             HHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             HHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence            8888876555443322                           24789999554    45566666666654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.66  E-value=3.2e-15  Score=133.42  Aligned_cols=233  Identities=12%  Similarity=0.019  Sum_probs=146.1

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   86 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~   86 (266)
                      ++.+++.+|.+     |+++|+++++++.    .+.+|+++..++++|.+-    ++++|.++|++||+++++|++|.++
T Consensus       202 ~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~----~l~~I~~la~~~~~~lhvD~a~g~~  277 (486)
T 1js3_A          202 GGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD----NLLEVGPICHEEDIWLHVDAAYAGS  277 (486)
T ss_dssp             HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCC----CHHHHHHHHHHcCCEEEEehhhHHH
Confidence            35567778753     7999999995421    124677776777888774    9999999999999999999999654


Q ss_pred             CCcCcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-h-hhccCC---CCCC-----------------CCCC
Q psy6547          87 GRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-V-MGTLVP---GTHG-----------------STYG  141 (266)
Q Consensus        87 ~~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~-~~~~~~---~~~~-----------------~~~~  141 (266)
                      ......+.....++ ..|.++  .+|+++++ ++.|+++.+.+ . .+.+..   +...                 .+..
T Consensus       278 ~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr  356 (486)
T 1js3_A          278 AFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR  356 (486)
T ss_dssp             GGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCC
T ss_pred             HHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCc
Confidence            21111111101121 345555  67999977 78999888644 2 344421   1100                 0001


Q ss_pred             CcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHH
Q psy6547         142 GNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCI  217 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  217 (266)
                      ...+.+.   .+++.+..   +++.++..++++++.+.|++ ++. ..+.   ...+.   ++.|.+... .....++.+
T Consensus       357 ~~~~~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~---~~~~~---~v~f~~~~~-~~~~~~l~~  425 (486)
T 1js3_A          357 FRSLKMW---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRFEVCA---EVTLG---LVCFRLKGS-DGLNEALLE  425 (486)
T ss_dssp             CTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEECS---CCCSS---EEEEEESSC-HHHHHHHHH
T ss_pred             hhHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeC---CCcee---EEEEEecCh-HHHHHHHHH
Confidence            1233333   34443333   34667778888899998887 422 1111   12244   677766531 112578999


Q ss_pred             HHHHCCceecc----CCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         218 KMKDAGLVTKP----ISNNIIRLSP-ALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       218 ~l~~~gi~~~~----~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      +|.++|+++..    .+.+++|+++ +...|++++++++++|+++++++..+
T Consensus       426 ~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~  477 (486)
T 1js3_A          426 RINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAA  477 (486)
T ss_dssp             HHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99988876432    2457899995 45579999999999999998876543

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.66  E-value=5.5e-15  Score=128.14  Aligned_cols=218  Identities=11%  Similarity=0.106  Sum_probs=143.0

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++.+      |+++|++++  .+++++|++.+.   +|..    .++++|.++|++||+++|+||+|+..   
T Consensus       100 ~g~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~---~g~~----~~~~~i~~l~~~~~~~li~D~a~~~g---  167 (390)
T 3b8x_A          100 YGLRVKFVDIDINTLNIDIESLKEAV--TDSTKAILTVNL---LGNP----NNFDEINKIIGGRDIILLEDNCESMG---  167 (390)
T ss_dssp             TTCEEEEECBCTTTCSBCHHHHHHHC--CTTEEEEEEECG---GGCC----CCHHHHHHHHTTSCCEEEEECTTCTT---
T ss_pred             cCCEEEEEecCccccCcCHHHHHHHh--CcCCeEEEEECC---ccCh----hhHHHHHHHHHHcCCEEEEECcCccc---
Confidence            45567777654      799999999  346888887532   2333    38999999999999999999999621   


Q ss_pred             CcccccccCCCCcCeeeeccccc----CCchhhhhheecH-Hhhhcc---CCCC--------------------------
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALS----GGLYPISAVLADD-EVMGTL---VPGT--------------------------  135 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~----~g~~~~g~~~~~~-~~~~~~---~~~~--------------------------  135 (266)
                       ..+....++..+++.++||..+    +|  +.|++++++ ++.+.+   ....                          
T Consensus       168 -~~~~~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (390)
T 3b8x_A          168 -ATFNNKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKF  244 (390)
T ss_dssp             -CEETTEETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCB
T ss_pred             -CEECCcccccccceEEEEccCCCCCccC--CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccce
Confidence             1112234566778888886544    33  347777765 443322   2110                          


Q ss_pred             --CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchH
Q psy6547         136 --HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       136 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                        .+.++..+++.++++...++.++  +..++.+++.+++.+.|++ +.. ............   .+++.++...+.+.
T Consensus       245 ~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~  318 (390)
T 3b8x_A          245 VLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKD-HPYLDVQQETGESSWF---GFSFIIKKDSGVIR  318 (390)
T ss_dssp             CSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBCCCC---EEEEEECTTSCCCH
T ss_pred             eccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCcccE---EEEEEecCcCcccH
Confidence              11223367788777777776553  5778888899999999987 432 111110011112   35555552113467


Q ss_pred             HHHHHHHHHCCceeccC-------C-C---------------------CEEEEeccCCCCHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVTKPI-------S-N---------------------NIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~-------~-~---------------------~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      +++.+.|.++||.+++.       . +                     +.+|++++..+|++|++++++.|
T Consensus       319 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          319 KQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            88999999999988752       1 1                     25999999999999999999876

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.66  E-value=2.9e-15  Score=133.41  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=149.2

Q ss_pred             CCCCceeecCC----CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          16 HMPGYNIIPYN----DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        16 ~~~~v~~~~~~----d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      .+.+++.+|.+    |+++|+++|+++.    .+.+++++...+++|.+.    ++++|.++|++||+++++|++|.+..
T Consensus       202 ~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~----~l~~I~~la~~~~~~lhvD~A~~~~~  277 (475)
T 3k40_A          202 GGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD----YLDECGPVGNKHNLWIHVDAAYAGSA  277 (475)
T ss_dssp             HTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTGGGG
T ss_pred             cCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC----CHHHHHHHHHHhCCeEEEeHHhHHHH
Confidence            35577788774    8999999996531    256677777777788875    99999999999999999999996532


Q ss_pred             CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-hh-hccCC---CCCCC---------CC---CCcHHHH
Q psy6547          88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-VM-GTLVP---GTHGS---------TY---GGNPLAC  147 (266)
Q Consensus        88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~-~~~~~---~~~~~---------~~---~~~~~~~  147 (266)
                      ..+..+.....++ ..|.++  .+|+++++ ...|+++.+.+ .+ +.+..   +....         .+   .+-+...
T Consensus       278 ~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~  356 (475)
T 3k40_A          278 FICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRA  356 (475)
T ss_dssp             GGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC---------------------------CCCGGGTH
T ss_pred             HhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccH
Confidence            2222111111232 346655  57999876 66777776543 32 22210   10000         00   1111223


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .....+++.+..   +++.++..++++++++.|++ ++. ..+.   +....   ++.|.+... .....++.++|.++|
T Consensus       357 l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~l~~---~~~~~---iv~f~~~~~-~~~~~~l~~~L~~~g  428 (475)
T 3k40_A          357 LKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DSRFELAA---EINMG---LVCFRLKGS-NERNEALLKRINGRG  428 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEESS---CCBTT---EEEEEESSC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEec---CCceE---EEEEEeCCc-hHHHHHHHHHHHhCC
Confidence            334445554444   45677888899999999987 432 2221   12233   778877542 234688999999887


Q ss_pred             ceec-c---CCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         224 LVTK-P---ISNNIIRLSPA-LNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       224 i~~~-~---~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      .+.. +   .+..++|+++. ...|++|+++++++|+++++++.++
T Consensus       429 ~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~~  474 (475)
T 3k40_A          429 HIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE  474 (475)
T ss_dssp             SCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            7543 2   24578999965 4458999999999999999887654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.65  E-value=5e-17  Score=142.91  Aligned_cols=216  Identities=13%  Similarity=0.016  Sum_probs=145.2

Q ss_pred             CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547          17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   96 (266)
Q Consensus        17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~   96 (266)
                      +.+++.+.. |+++|++.+  .+++++++++.++|++|.+ ++ +.       ++  ++..+.|+++.+  .......+.
T Consensus       176 g~~~~~~~~-d~~~l~~~~--~~~~k~v~l~~p~NPtG~~-~~-~~-------l~--~~~~i~d~~~~~--~~~s~~~~~  239 (427)
T 2hox_A          176 DKKGYVWAG-NAANYVNVS--NPEQYIEMVTSPNNPEGLL-RH-AV-------IK--GCKSIYDMVYYW--PHYTPIKYK  239 (427)
T ss_dssp             CBTTEEEEE-EGGGGTTCS--CGGGEEEEEESSCTTTCCC-CC-CS-------ST--TCEEEEECTTCS--TTTSCCCSC
T ss_pred             CCeeeeecC-CHHHHHHhh--cCCceEEEEcCCCCCcccc-cH-HH-------Hc--CCCEEEeecccC--CCCCccccC
Confidence            444444432 677887777  3357888887788888987 55 32       22  566788887742  111111111


Q ss_pred             cCCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---------hc----c
Q psy6547          97 YEDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---------EE----N  161 (266)
Q Consensus        97 ~~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~----~  161 (266)
                       .+.+..+.+|||.++ +| +|+||+++ ++++.+.+........++.+.+++.++..+|+...         .+    .
T Consensus       240 -~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~  317 (427)
T 2hox_A          240 -ADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF  317 (427)
T ss_dssp             -BCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHH
T ss_pred             -CCceEEEEeChhcCCCCC-ceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHH
Confidence             344555666999998 88 99999999 58888777654444456678888888888887532         11    2


Q ss_pred             HHHHHHHHHHHHHHHhhccc-ccCC-----------CcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceecc
Q psy6547         162 MIENAYKMGEIFRSELSSPA-NKSK-----------ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKP  228 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~-~~~~-----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~  228 (266)
                      .+++++++++++.+.|++ + +...           +....+..|+   |+|+.++.    +..+++++|+ ++||.++|
T Consensus       318 ~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~---f~~~~~~~----~~~~~~~~ll~~~gI~v~p  389 (427)
T 2hox_A          318 GFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPS---YAWVKCEW----EEDKDCYQTFQNGRINTQN  389 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCS---EEEEEECS----GGGCSHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCce---EEEEECCC----cHHHHHHHHHHHCCEEEcC
Confidence            456777888888888887 4 2111           1111223477   88988875    3456777775 88999987


Q ss_pred             C-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         229 I-----SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       229 ~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +     +.+++|+++.  .+++++++++++|.+++++
T Consensus       390 g~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          390 GVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             GGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            5     2689999955  5999999999999988743

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.65  E-value=2.7e-15  Score=134.73  Aligned_cols=233  Identities=12%  Similarity=0.050  Sum_probs=144.8

Q ss_pred             CceeecCC-----CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.++.+     |+++|+++|+++.    .+++|+++..++++|.+-    ++++|.++|++||+++++|++|.+....
T Consensus       218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd----~l~~I~~ia~~~~~~lhvD~a~~~~~~~  293 (511)
T 3vp6_A          218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD----PIQEIADICEKYNLWLHVDAAWGGGLLM  293 (511)
T ss_dssp             GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC----CHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc----cHHHHHHHHHHcCCEEEEEccchhhHhh
Confidence            67788765     8999999996531    378888988898899874    9999999999999999999999653221


Q ss_pred             CcccccccCCC-CcCeee--ecccccCCchhhhhheecH-Hhhhcc-C---CCCCCC-------------CC-CCcHHHH
Q psy6547          90 GKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMGTL-V---PGTHGS-------------TY-GGNPLAC  147 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~~~~-~---~~~~~~-------------~~-~~~~~~~  147 (266)
                      ...+.....|+ ..|.++  .+|+++++ ...|+++.+. .+.+.. .   .+....             +. .+.+..+
T Consensus       294 ~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~a  372 (511)
T 3vp6_A          294 SRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDI  372 (511)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCH
T ss_pred             ChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHH
Confidence            22111222232 345555  77999866 5677776644 344332 1   111000             00 0111123


Q ss_pred             HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--------------c
Q psy6547         148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA--------------I  209 (266)
Q Consensus       148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--------------~  209 (266)
                      ..+..+++.+..   +++.++..++.+++++.|++ ... ..+.. ......   ++.|.+....              .
T Consensus       373 l~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~-~~p~~~---~v~f~~~p~~~~~~~~~~~~~~~l~  447 (511)
T 3vp6_A          373 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFN-GEPEHT---NVCFWYIPQSLRGVPDSPQRREKLH  447 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSS-SCCSSS---CEEEEECCGGGSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEec-CCCCeE---EEEEEEeCccccccccchhHHHHHH
Confidence            333444444443   45778888899999999987 422 22210 012222   5565543211              0


Q ss_pred             chHHHHHHHHHHCCceecc-----CCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         210 LEVYDVCIKMKDAGLVTKP-----ISNNIIRLSP-ALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       210 ~~~~~~~~~l~~~gi~~~~-----~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ....++.++|.++|+++..     .+.+++|+++ +...+++|++++++.|++.-+.+
T Consensus       448 ~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          448 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            1145788999999875432     1235799998 68889999999999999876554

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.64  E-value=2.6e-15  Score=133.53  Aligned_cols=217  Identities=14%  Similarity=0.108  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc-cccccCCCCcC
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL-LAIHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~-~~~~~~~~~~d  103 (266)
                      .|+++|++++++. ++++|+++...+  |...    ++++|+++|++||+++++|++|. |+...|.. ..+  .+.+.-
T Consensus       190 iD~d~le~~l~~~-~~klIi~~~s~~--~~~~----dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~--~~aDiv  260 (490)
T 2a7v_A          190 IDYNQLALTARLF-RPRLIIAGTSAY--ARLI----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF--KHADIV  260 (490)
T ss_dssp             BCHHHHHHHHHHH-CCSEEEECCSSC--CSCC----CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG--GTCSEE
T ss_pred             cCHHHHHHHHhhc-CCcEEEEcCCCC--CCcc----cHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC--CCCCEE
Confidence            4899999999543 357777764433  2332    69999999999999999999983 32112221 112  133444


Q ss_pred             eeeecccccCCchhhhhheecHHh---------------hhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHH
Q psy6547         104 IVILGKALSGGLYPISAVLADDEV---------------MGTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIE  164 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~  164 (266)
                      +.+++|+|+|  .+.|++++++++               .+.++.. ......+++...+++...++.....   +++.+
T Consensus       261 ~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~  338 (490)
T 2a7v_A          261 TTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL  338 (490)
T ss_dssp             EEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             EECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4458899964  567888887642               2222211 1111122344445555556665532   45788


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C-----CCCEEE
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I-----SNNIIR  235 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~iR  235 (266)
                      ++.++++++++.|.+ .+...+.     .+.+++++++.+... +.+..++.+.|.+.||.+..    +     ..+.+|
T Consensus       339 ~~~~na~~L~~~L~~-~G~~v~~-----~~t~t~lv~vdl~~~-g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iR  411 (490)
T 2a7v_A          339 QVLKNARAMADALLE-RGYSLVS-----GGTDNHLVLVDLRPK-GLDGARAERVLELVSITANKNTCPGDRSAITPGGLR  411 (490)
T ss_dssp             HHHHHHHHHHHHHHH-TTCEEGG-----GSCSSSEEEEECTTT-TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEE
T ss_pred             HHHHHHHHHHHHHHH-cCcEEec-----CCCCCeEEEEEeCCC-CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceE
Confidence            889999999999988 4432211     122344888887642 45678889999999999863    2     357899


Q ss_pred             Eecc----CCCCHHHHHHHHHHHHHHHHH
Q psy6547         236 LSPA----LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       236 ~~~~----~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++.+    ..++++|++++++.|.++++.
T Consensus       412 ig~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          412 LGAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             EESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            9653    468999999999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.63  E-value=6.2e-15  Score=129.51  Aligned_cols=199  Identities=13%  Similarity=0.116  Sum_probs=135.7

Q ss_pred             cccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHh--cCCEEEEecc
Q psy6547          11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEV   82 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~De~   82 (266)
                      ..+..++.+++.++.+     |+++|++++  .+++++|++++ .+|++|. .++.+++++|+++|++  +|+++|+||+
T Consensus       133 ~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l--~~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la~~~~~~~~livDea  209 (431)
T 3ht4_A          133 GSFKEYNIGYNAVPLTEGGLVDFEAVAAAI--HSNTKMIGIQRSKGYATRP-SFTISQIKEMIAFVKEIKPDVVVFVDNC  209 (431)
T ss_dssp             SCSGGGTCEEEECCBCTTSSBCHHHHHHHC--CTTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred             chHHHcCCEEEEeCCCCCCCcCHHHHHhhc--CCCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            4456678899999984     999999999  45799999996 5555555 4889999999999999  9999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCC----CCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      |+.+.....+.   .++.+..+.+++|+++||+ .+.|++++++++.+.+...    ..+.+.+++...+.++...++.+
T Consensus       210 ~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~  286 (431)
T 3ht4_A          210 YGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA  286 (431)
T ss_dssp             TCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH
T ss_pred             ChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhH
Confidence            97664323322   2355555666999998641 3568899999888776431    11222222111123334444432


Q ss_pred             hhccHHHHHHHHHHHHHHHhhcccccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         158 LEENMIENAYKMGEIFRSELSSPANKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                        +...++..+++.++.+.|++ ++....+ ...++.+.   ++.+.+++  .....+|++.|.+..
T Consensus       287 --~~~~~~~~~~a~~l~~~L~~-~g~~v~p~~~~~~~~l---i~~i~l~~--~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          287 --PHVAGQALKGAIFTAAFLEK-LGMNTSPAWNAPRTDL---IQSVQFDD--KDRMIAFCQAIQYAS  345 (431)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-HTCCEESCTTSCCSSS---CCEEECCC--HHHHHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHHHHHHHHHh-CcCEecCCCCCCCccE---EEEEEeCC--HHHHHHHHHHHHhcC
Confidence              34567777888888888887 5542211 11334566   88888876  557888999999873

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.62  E-value=4.1e-15  Score=138.93  Aligned_cols=228  Identities=11%  Similarity=0.034  Sum_probs=146.2

Q ss_pred             CHHHHHHHHhcCCCEE--------EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc-cccc
Q psy6547          27 DVDALEAKLKSNPNIC--------AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHY   97 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~--------~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~-~~~~   97 (266)
                      |+++|+++++++++++        +++++.. +++|.+.    ++++|.++|++||+++++||+|++....+..+ ....
T Consensus       291 d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~----dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~  365 (755)
T 2vyc_A          291 QPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY----NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA  365 (755)
T ss_dssp             SHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEE----CHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSS
T ss_pred             CHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceec----CHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcch
Confidence            8999999997644333        5554443 4578876    89999999999999999999996431222111 0111


Q ss_pred             -CC--CCc------CeeeecccccCCchhhhhheecHH--hh--hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhc---
Q psy6547          98 -ED--VRP------DIVILGKALSGGLYPISAVLADDE--VM--GTLVP-GTHGSTYGGNPLACKLAMTALDVILEE---  160 (266)
Q Consensus        98 -~~--~~~------d~~~~sK~~~~g~~~~g~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~---  160 (266)
                       .+  .+.      -+.+++|+++|. ...|++..+.+  ..  ..+.. .....+.+++...+++..++++.+..+   
T Consensus       366 ~~g~~aD~~~~~~iv~~S~hK~L~g~-~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~  444 (755)
T 2vyc_A          366 MRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL  444 (755)
T ss_dssp             SCSCCCCCSSBEEEEEEETTTSSSCC-TTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHH
T ss_pred             hcCCcCCccCCCeEEEECccccccCc-CCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHH
Confidence             23  222      344588998753 22455655433  11  11111 012334556777788888888876543   


Q ss_pred             cHHHHHHHHHHHHHHHhhccccc---------C-CCc-ccEEe-------------------------------------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANK---------S-KAS-FKLSS-------------------------------------  192 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~---------~-~~~-~~~~~-------------------------------------  192 (266)
                      ++++++.++.++++++|++ ++.         . .+. ....+                                     
T Consensus       445 ~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  523 (755)
T 2vyc_A          445 SLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKD  523 (755)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccc
Confidence            5788888888999988877 321         0 000 00000                                     


Q ss_pred             --cCc---cceeeEEEEeeCc--------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         193 --GGL---KKSINTLILSVSA--------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       193 --~g~---~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        .|.   +-..+.+.++..+        +.++.++.+.|.++||.+...+.+.+|++++..+|+++++++++.|.++.+
T Consensus       524 ~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~  603 (755)
T 2vyc_A          524 IPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_dssp             CCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred             cCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence              110   0014555554211        356688999999999999877789999999999999999999999998876


Q ss_pred             HH
Q psy6547         260 TM  261 (266)
Q Consensus       260 ~~  261 (266)
                      ..
T Consensus       604 ~~  605 (755)
T 2vyc_A          604 HY  605 (755)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.58  E-value=8.5e-14  Score=122.62  Aligned_cols=216  Identities=13%  Similarity=0.108  Sum_probs=135.6

Q ss_pred             CCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc-ccCcCCcC
Q psy6547          16 HMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV-QTGLGRTG   90 (266)
Q Consensus        16 ~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~-~~~~~~~g   90 (266)
                      .+.+++.++..    |+++    +  ++++++|+++.+ |++|.+.    ++++|.++|+++|+++++|-. ++ ++...
T Consensus       174 ~G~~v~~v~~~~~~~d~~~----i--~~~t~~v~i~~p-n~tG~~~----~l~~i~~la~~~g~~vivd~d~~a-~g~~~  241 (438)
T 1wyu_A          174 VGAKLLTLPLEGGRTPLPE----V--GEEVGAVVVQNP-NFLGALE----DLGPFAEAAHGAGALFVAVADPLS-LGVLK  241 (438)
T ss_dssp             TTCEEEEECCBTTBCCCCC----C--CTTEEEEEEESS-CTTSBCC----CHHHHHHHHHHTTCEEEEECCTTG-GGTBC
T ss_pred             CCCEEEEEcCcCCccCHHH----h--CCCeEEEEEECC-CCCeEEe----cHHHHHHHHHHcCCEEEEEechhh-ccCcC
Confidence            45567777632    2333    5  457899998887 8899886    899999999999999996622 21 22111


Q ss_pred             cccccccCCCCcCeeee-ccccc-----CCchhhhhheecHHhhhccCCCCC--------------------------CC
Q psy6547          91 KLLAIHYEDVRPDIVIL-GKALS-----GGLYPISAVLADDEVMGTLVPGTH--------------------------GS  138 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~-sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~~--------------------------~~  138 (266)
                      ..   ..+  .+|++++ +|.|+     +| .++|++++++++.+.+.....                          ..
T Consensus       242 ~~---~~~--g~D~~~~s~kk~~~~~~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~  315 (438)
T 1wyu_A          242 PP---GAY--GADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKA  315 (438)
T ss_dssp             CH---HHH--TCSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGS
T ss_pred             CC---ccC--CCCEEEECCcccCCCccCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcc
Confidence            11   222  3667665 46543     45 478999999888776643210                          11


Q ss_pred             CCCC---cHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchH
Q psy6547         139 TYGG---NPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       139 ~~~~---~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      +...   +.+...++...+..+..   +++.++++++++++.+.|++ +..  +.. ......   +..+.+..  +.+.
T Consensus       316 t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g--~~~-~~~~~~---~~~~~~~~--~~~~  386 (438)
T 1wyu_A          316 KSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLE-VPG--VRP-FTPKPF---FNEFALAL--PKDP  386 (438)
T ss_dssp             SCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STT--CEE-CSCSSB---CSEEEEEC--SSCH
T ss_pred             cCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCC--eEE-CCCCCe---EEEEEEeC--CCCH
Confidence            2211   22222222222444433   34677888899999999988 521  211 101122   22233332  2367


Q ss_pred             HHHHHHHHHCCcee--ccC---CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVT--KPI---SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       213 ~~~~~~l~~~gi~~--~~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .+++++|.++||.+  .++   ..+++|++++..+|++++++++++|++++
T Consensus       387 ~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          387 EAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             HHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            89999999999998  443   36899999998899999999999998764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.58  E-value=4.3e-14  Score=131.14  Aligned_cols=228  Identities=9%  Similarity=-0.070  Sum_probs=141.5

Q ss_pred             CHHHH-----HHHHhcC-CC---E----EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc--
Q psy6547          27 DVDAL-----EAKLKSN-PN---I----CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--   91 (266)
Q Consensus        27 d~~~l-----~~~l~~~-~~---~----~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~--   91 (266)
                      |+++|     +++++++ ++   +    ++++++.. +++|.+.    ++++|.++|++||+++++||+|++....+.  
T Consensus       255 d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~----dl~~I~~la~~~g~~livDeAh~~~~~f~~~~  329 (730)
T 1c4k_A          255 YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIY----NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMM  329 (730)
T ss_dssp             CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEE----CHHHHHHHHGGGBSEEEEECTTCCGGGSSGGG
T ss_pred             CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeec----CHHHHHHHHHHcCCeEEEEcccccccccCccc
Confidence            67777     8888543 11   3    66665543 3578876    899999999999999999999964211121  


Q ss_pred             ----ccccccCCCC----cCeeeecccccCCchhh-hhheecHHhhhc----cC-----C-CCCCCCCCCcHHHHHHHHH
Q psy6547          92 ----LLAIHYEDVR----PDIVILGKALSGGLYPI-SAVLADDEVMGT----LV-----P-GTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        92 ----~~~~~~~~~~----~d~~~~sK~~~~g~~~~-g~~~~~~~~~~~----~~-----~-~~~~~~~~~~~~~~~a~~~  152 (266)
                          ....+.++.+    .-+.+++|+++|  ++. |++..+.+.+..    +.     . .....+.+++...+++..+
T Consensus       330 ~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g--~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~a  407 (730)
T 1c4k_A          330 RNSSPLLIDDLGPEDPGIIVVQSVHKQQAG--FSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDV  407 (730)
T ss_dssp             GGGCTTSCCCCCTTSCEEEEEECHHHHSSC--CTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             CCcCcccccccCCCCCCEEEEECCCCCCCC--CCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence                1111122443    233448899875  334 455443332210    00     0 0122334566777777777


Q ss_pred             HHHHHhh---ccHHHHHHHHHHHHHHHhhc-ccccCCCcccE--------------------------------E--ecC
Q psy6547         153 ALDVILE---ENMIENAYKMGEIFRSELSS-PANKSKASFKL--------------------------------S--SGG  194 (266)
Q Consensus       153 ~l~~~~~---~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~--------------------------------~--~~g  194 (266)
                      +++.+..   +++++++.++.+++++.|++ ..+...+....                                .  ..+
T Consensus       408 A~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  487 (730)
T 1c4k_A          408 NAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDN  487 (730)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCc
Confidence            7776654   34778888888889988876 11211111000                                0  011


Q ss_pred             c-c-ce-eeEEEEee---------CccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         195 L-K-KS-INTLILSV---------SAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       195 ~-~-~~-~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      . + .| -+.+..+.         ..+.++.++.+.|.++||.+...+...+|++++..+|+++++++++.|.++.+..
T Consensus       488 ~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~  566 (730)
T 1c4k_A          488 QYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI  566 (730)
T ss_dssp             CEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            0 0 01 13444431         1145788999999999999998878999999999999999999999999987765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.54  E-value=7.5e-14  Score=120.68  Aligned_cols=227  Identities=11%  Similarity=0.103  Sum_probs=140.0

Q ss_pred             CCCCCceeecCC------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547          15 PHMPGYNIIPYN------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   87 (266)
Q Consensus        15 ~~~~~v~~~~~~------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~   87 (266)
                      ..+.+++.++.+      |++++++++++ ++++++|+.+   +++|...    ++++|.++|+ ||+++|+|++|+ ++
T Consensus        97 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~---~~~G~~~----~~~~i~~la~-~~~~vi~D~a~a-~g  167 (377)
T 3ju7_A           97 WCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY---ATFGSWM----NLEEYEELEK-KGVPVVVDAAPG-FG  167 (377)
T ss_dssp             HTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB---CGGGBCC----CCHHHHHHHH-TTCCBEEECTTC-TT
T ss_pred             HcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE---CCCCCcc----CHHHHHHHHh-cCCEEEEECCCc-cC
Confidence            345666776643      89999998832 2238888743   2356554    6899999999 999999999995 32


Q ss_pred             CcCcccccccC-CCCcCeeeec----ccccCCchhhhhhee-cHHhhhccCCC------------CCCCCCCCcHHHHHH
Q psy6547          88 RTGKLLAIHYE-DVRPDIVILG----KALSGGLYPISAVLA-DDEVMGTLVPG------------THGSTYGGNPLACKL  149 (266)
Q Consensus        88 ~~g~~~~~~~~-~~~~d~~~~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~a  149 (266)
                         ..+..... +...|+.++|    |.+++|  ..|+++. ++++.+.++..            ..+..+..+.+.++.
T Consensus       168 ---~~~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~  242 (377)
T 3ju7_A          168 ---LMNGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAI  242 (377)
T ss_dssp             ---CEETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHH
T ss_pred             ---CeECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHH
Confidence               11111112 1223555543    999875  3666665 45554443321            113345667777777


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccce-eeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547         150 AMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKP  228 (266)
Q Consensus       150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  228 (266)
                      +...++.+  +...++.+++.+++.+.|++ ++...............+ ++.+.+++  ..+.+++.+.|.++||.++.
T Consensus       243 ~~~~l~~l--~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~~~~  317 (377)
T 3ju7_A          243 GIATMKKW--DDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPE--EVRNKQVIEDLKKQKIEARL  317 (377)
T ss_dssp             HHHHHHTH--HHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCT--TSCHHHHHHHHHTTTBCCBC
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCC--hhhHHHHHHHHHHCCCceec
Confidence            76666543  44667778888888888887 542111110111110000 33444443  33588999999999998864


Q ss_pred             CC-------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         229 IS-------------------------NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       229 ~~-------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ..                         .+.+|+.++...|++|++++++.|.+++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          318 YFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             TTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             ccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            31                         157999999999999999999999887654

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.53  E-value=4e-14  Score=123.95  Aligned_cols=197  Identities=10%  Similarity=0.057  Sum_probs=128.7

Q ss_pred             ccCCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEcc----ccCCCCcccCChHHHHHHHHHHHh--cCCEEEEe
Q psy6547          12 EFGPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIAD   80 (266)
Q Consensus        12 ~~~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~D   80 (266)
                      .+..++.+++.++.     .|+++|++++++++++++|++++    ++|++|.+.    ++++|+++|++  +|+++++|
T Consensus       143 ~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~----dl~~i~~la~~~~~g~~livD  218 (427)
T 3i16_A          143 SLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIE----DIKSIVDCVKNIRKDIICFVD  218 (427)
T ss_dssp             CTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHH----HHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHH----HHHHHHHHHHHhCCCCEEEEE
Confidence            34455778888887     58999999996435799999999    777777664    99999999999  99999999


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCC--CCcH-HH-HHHHHHHHH
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTY--GGNP-LA-CKLAMTALD  155 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~a~~~~l~  155 (266)
                      ++|..+.....+.   ..+.+..+.++||.++|+. .+.|++++++++++.+........+  ..++ +. +..+...++
T Consensus       219 ~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~  295 (427)
T 3i16_A          219 NCYGEFMDTKEPT---DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLF  295 (427)
T ss_dssp             CTTTTTSSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH
T ss_pred             CCCccccccCCcc---ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHH
Confidence            9996442112221   2344455556999999642 3468899999988877642111111  1111 21 223333333


Q ss_pred             HHhhccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         156 VILEENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      ..  ....++..+++.++.+.|++ .+....+. ..+....   ++.|.+.+  .....+|++.|....
T Consensus       296 ~~--~~r~~~~~~~a~~la~~L~~-~g~~V~p~~~~~~~~~---i~~i~l~~--~~~~~~f~~~l~~~~  356 (427)
T 3i16_A          296 LA--PHISMEALKGAILCSRIMEL-AGFEVMPKYDEKRSDI---IQSIKFND--KDKLIEFCKGIQTGS  356 (427)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHH-TTCEEESCTTSCCSSS---CEEEECSS--HHHHHHHHHHHHHTC
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHh-CCCeecCCCCCCCccE---EEEEEECC--HHHHHHHHHHHhhcC
Confidence            21  34567777788888888887 54311110 0112233   88888876  566888999999873

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.52  E-value=7.3e-14  Score=120.26  Aligned_cols=212  Identities=9%  Similarity=0.000  Sum_probs=145.8

Q ss_pred             HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeee
Q psy6547          28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL  107 (266)
Q Consensus        28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~  107 (266)
                      +++++..+  ++++++|.+..+.+.+|.+.    ++     +|+++|+++++|-+++ ++  ..++.++.++  ....+.
T Consensus       142 ~~~~~~~i--~~~t~lV~~~h~et~tG~~~----pi-----i~~~~~~~~~vD~~q~-~g--~~~id~~~~~--~~~~s~  205 (377)
T 3e77_A          142 PDPSTWNL--NPDASYVYYCANETVHGVEF----DF-----IPDVKGAVLVCDMSSN-FL--SKPVDVSKFG--VIFAGA  205 (377)
T ss_dssp             CCGGGCCC--CTTCSCEEEESEETTTTEEC----SS-----CCCCTTCCEEEECTTT-TT--SSCCCGGGCS--EEEEEG
T ss_pred             CChHHhcc--CCCccEEEEeCccCchheEc----hh-----hhccCCCEEEEEcccc-cC--CCCCchhhcC--EEEEec
Confidence            45555445  56788888888888889885    33     4778999999999995 32  2334455555  334446


Q ss_pred             cccccCCchhhhhheecHHhhhccCCC------------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHH
Q psy6547         108 GKALSGGLYPISAVLADDEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGE  171 (266)
Q Consensus       108 sK~~~~g~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~  171 (266)
                      .|++| + ..+|++..++++.+.+.+.            ......+++.....+...+++++.++    .+.++.+++.+
T Consensus       206 ~K~~g-p-~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~  283 (377)
T 3e77_A          206 QKNVG-S-AGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQ  283 (377)
T ss_dssp             GGTTS-C-TTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccC-C-CccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            69996 3 4588888888876555421            01123456666777788888887654    47788889999


Q ss_pred             HHHHHhhccccc-CCCc-ccEEecCccceeeEEEEeeCcc-ch-HHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHH
Q psy6547         172 IFRSELSSPANK-SKAS-FKLSSGGLKKSINTLILSVSAI-LE-VYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ  245 (266)
Q Consensus       172 ~l~~~l~~~~~~-~~~~-~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~  245 (266)
                      ++++.|++ ++. .... ......+.   ++.|.++...+ .+ ...+...|.++||.++++  ..+.+|+|++..+|++
T Consensus       284 ~l~~~L~~-~~g~~~~~~~~~~rs~~---ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~e  359 (377)
T 3e77_A          284 TIYEIIDN-SQGFYVCPVEPQNRSKM---NIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIE  359 (377)
T ss_dssp             HHHHHHHT-STTSEECCSCGGGBCSS---EEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHH
T ss_pred             HHHHHHHh-cCCceecCCCHHHcCCc---EEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHH
Confidence            99999998 532 1011 10112234   58888875221 11 146888888999998875  2367999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6547         246 ELREGLDIIINTINTM  261 (266)
Q Consensus       246 ~i~~~~~~l~~~~~~~  261 (266)
                      |++++++.|++++++.
T Consensus       360 dId~l~~al~~~~~~~  375 (377)
T 3e77_A          360 DVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.52  E-value=3.5e-14  Score=122.84  Aligned_cols=211  Identities=12%  Similarity=0.021  Sum_probs=142.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcc-cCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAV-VPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~-~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      ++++++..+  ++++++|++..+.+.+|.+ .    ++++|.     +|+++++|-+++ ++  ..++.++.++  .++.
T Consensus       155 ~~~~~~~~l--~~~t~lV~~~h~et~tG~~i~----pi~~i~-----~g~~~~vDa~qs-~g--~~pidv~~~~--~~~~  218 (386)
T 3qm2_A          155 VKPMREWQL--SDNAAYLHYCPNETIDGIAID----ETPDFG-----PEVVVTADFSST-IL--SAPLDVSRYG--VIYA  218 (386)
T ss_dssp             ECCGGGCCC--CTTCSCEEECSEETTTTEECC----CCCCCC-----TTCCEEEECTTT-TT--SSCCCGGGCS--EEEE
T ss_pred             CchHHHhhc--CCCCcEEEEECCcCCcCEecC----chhhhc-----CCCEEEEEcccc-cC--CCCCCccccC--EEEE
Confidence            356666666  5578899999888888985 4    455553     899999999994 32  1234455554  3455


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCCC------------CCCCCCCcHHHHHHHHHHHHHHhh----ccHHHHHHHH
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPGT------------HGSTYGGNPLACKLAMTALDVILE----ENMIENAYKM  169 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~  169 (266)
                      +..|++| + ..+|++..++++.+.+.+..            .....+++..+..+...+++++..    ++..++.+++
T Consensus       219 s~hK~lG-P-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l  296 (386)
T 3qm2_A          219 GAQKNIG-P-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQK  296 (386)
T ss_dssp             ETTTTTC-C-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ecccccC-C-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5669996 3 45889999888766554310            011124455566677777777655    3477888899


Q ss_pred             HHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHH
Q psy6547         170 GEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQE  246 (266)
Q Consensus       170 ~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~  246 (266)
                      .+++++.|++ ++. ..........+.   ++.|.++.. +.+ .++...|.++||.++.+.  .+.+|+|++..+|++|
T Consensus       297 ~~~l~~~l~~-~~~~~~~~~~~~rs~~---iv~f~~~~~-~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~ed  370 (386)
T 3qm2_A          297 AELLYGVIDN-SDFYRNDVAQANRSRM---NVPFQLADN-TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEG  370 (386)
T ss_dssp             HHHHHHHHHT-CSSEECCBCGGGBCSS---EEEEEESSG-GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred             HHHHHHHHHH-CCCcccCCCHHHcCce---EEEEECCCc-ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHH
Confidence            9999999988 542 111110112234   788888741 344 678888999999987652  2569999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6547         247 LREGLDIIINTINTM  261 (266)
Q Consensus       247 i~~~~~~l~~~~~~~  261 (266)
                      ++++++.|+++.++.
T Consensus       371 Id~l~~~l~~~~~~~  385 (386)
T 3qm2_A          371 VKALTDFMIDFERRH  385 (386)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988763

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.51  E-value=1.6e-13  Score=119.66  Aligned_cols=196  Identities=11%  Similarity=0.075  Sum_probs=130.0

Q ss_pred             ccCCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEcc----ccCCCCcccCChHHHHHHHHHHHh--cCCEEEEe
Q psy6547          12 EFGPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIAD   80 (266)
Q Consensus        12 ~~~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~D   80 (266)
                      .+..++.+++.++.     .|++++++++  .+++++|++++    ++|++|.+.    ++++|+++|++  +|+++++|
T Consensus       128 ~l~~~G~~~~~v~~~~~g~~d~e~l~~ai--~~~tklV~i~~s~g~p~nptg~v~----~l~~I~~la~~~~~~~~livD  201 (409)
T 3jzl_A          128 SLKDFHIGYSSVPLLENGDVDFPRIAKKM--TPKTKMIGIQRSRGYADRPSFTIE----KIKEMIVFVKNINPEVIVFVD  201 (409)
T ss_dssp             CTGGGTCEEEECCCCTTSCCCHHHHHHHC--CTTEEEEEEECSCTTSSSCCCCHH----HHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHcCCEEEEeCCCCCCCcCHHHHHHhc--cCCCeEEEEECCCCCCCCCcCccc----cHHHHHHHHHhhCCCCEEEEe
Confidence            34456778888887     6999999999  45799999998    888888775    99999999999  99999999


Q ss_pred             ccccCcCCcCcccccccCCCCcCeeeecccccCCch-hhhhheecHHhhhccCCCC----CCCCCCCcHHHHHHHHHHHH
Q psy6547          81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY-PISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~  155 (266)
                      |+|..+.....+   ...+.+.-+.+++|.++++.. ..|++++++++++.+....    .....++....+.++...++
T Consensus       202 ~a~~~~~~~~~p---~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~  278 (409)
T 3jzl_A          202 NCYGEFVEYQEP---PEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF  278 (409)
T ss_dssp             CTTCTTTSSCCS---GGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH
T ss_pred             CCcccccccCCc---cccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHh
Confidence            999644211121   123444445559999996512 3588999999888775411    11122222211233444443


Q ss_pred             HHhhccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         156 VILEENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      ..  +...++..+++.++.+.|++ ++....+. ..+....   ++.+.+++  .....+|++.|.+...
T Consensus       279 ~~--~~r~~~~~~~a~~la~~L~~-~g~~v~p~~~~~~~~~---i~~i~l~~--~~~~~~~~~~L~~~~~  340 (409)
T 3jzl_A          279 LA--PHVTAQAIKGARFTAAMLAE-FGVEADPVWDAPRTDL---IQSVSFHN--KEKMVAFAQAIQAASP  340 (409)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHH-TTCEEESCTTSCCSSS---CCEEECSC--HHHHHHHHHHHHHTSS
T ss_pred             hH--HHHHHHHHHHHHHHHHHHHh-CCCcccCCCCCCCccE---EEEEEeCC--HHHHHHHHHHHHhcCc
Confidence            22  34567777888888888887 55311111 0122334   78888876  5678889999998743

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.51  E-value=7.3e-14  Score=122.30  Aligned_cols=197  Identities=11%  Similarity=0.058  Sum_probs=128.8

Q ss_pred             ccCCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEcc----ccCCCCcccCChHHHHHHHHHHHh--cCCEEEEec
Q psy6547          12 EFGPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADE   81 (266)
Q Consensus        12 ~~~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~De   81 (266)
                      .+..++.+++.++.    .|++++++++++++++++|++++    ++|++|.+.    ++++|+++|++  +|+++++|+
T Consensus       144 ~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~----dl~~i~~ia~~~~~g~~livD~  219 (427)
T 3hvy_A          144 SLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIA----EIAEIIKSIREVNENVIVFVDN  219 (427)
T ss_dssp             CTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHH----HHHHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHH----HHHHHHHHHHHhCCCCEEEEEC
Confidence            34446788888888    79999999996435799999999    677777664    99999999999  899999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCC--CC--CCCCCcHHHHHHHHHHHHH
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGT--HG--STYGGNPLACKLAMTALDV  156 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~a~~~~l~~  156 (266)
                      +|..+.....+.   ..+.+..+.++||+++|+. .+.|++++++++.+.+....  ..  ...+++...+..+...++.
T Consensus       220 a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~  296 (427)
T 3hvy_A          220 CYGEFVEEKEPT---DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFM  296 (427)
T ss_dssp             TTCTTTSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH
T ss_pred             CccccccCCCCc---ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhH
Confidence            996442112221   2344555556999999641 24588999999888776421  11  1111111113333333332


Q ss_pred             HhhccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         157 ILEENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      .  +...++..+++.++.+.|++ .+....+. ..+....   ++.+.+.+  .....+|++.|....
T Consensus       297 ~--~~r~~~~~~~a~~la~~L~~-~g~~V~p~~~~~~~~l---i~~~~l~~--~~~~~~f~~~l~~~~  356 (427)
T 3hvy_A          297 A--PHVTIEAVKGAVFCARIMEL-AGFDVLPKYNDKRTDI---IQAIKFND--EKKLIDFIKGIQTAS  356 (427)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHH-TTCEEESCTTSCCSSS---EEEEECSS--HHHHHHHHHHHHHTC
T ss_pred             H--HHHHHHHHHHHHHHHHHHHh-CCCeecCCCCCCCceE---EEEEeCCC--HHHHHHHHHHhcccc
Confidence            2  34667777888888888887 54311111 0112233   78888875  556788999998763

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.43  E-value=1.2e-12  Score=112.30  Aligned_cols=200  Identities=10%  Similarity=0.019  Sum_probs=137.0

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeee--cccccCCc
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL--GKALSGGL  115 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--sK~~~~g~  115 (266)
                      .++++++.+..+.+.+|.+. +.        +++ +|+++++|.+++ ++.  .++.++  +  .|++++  .|++| + 
T Consensus       138 ~~~t~lv~~~~~e~~tG~~~-~~--------i~~-~~~~~~vD~~q~-~g~--~~id~~--~--~d~~~~s~~K~~g-p-  198 (361)
T 3m5u_A          138 SDNADYAYICSNNTIYGTQY-QN--------YPK-TKTPLIVDASSD-FFS--RKVDFS--N--IALFYGGVQKNAG-I-  198 (361)
T ss_dssp             CTTSSEEEEESEETTTTEEC-SS--------CCC-CSSCEEEECGGG-TTS--SCCCCT--T--EEEEEEETTTTSS-C-
T ss_pred             CCCCCEEEEeCCCCCcceeC-Cc--------ccc-cCCEEEEEcccc-cCC--CCCCcc--c--CCEEEEechhccC-C-
Confidence            45688888888877788873 21        333 499999999995 321  222332  2  355554  49996 3 


Q ss_pred             hhhhhheecHHhhhccCC----C---------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhh
Q psy6547         116 YPISAVLADDEVMGTLVP----G---------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELS  178 (266)
Q Consensus       116 ~~~g~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~  178 (266)
                      ..+|++..++++.+.+.+    .         ......+++..+..+..++++++.+.    ...++.+++.+++++.|+
T Consensus       199 ~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~  278 (361)
T 3m5u_A          199 SGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID  278 (361)
T ss_dssp             TTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            458889998887755432    0         11122456777777888889888664    477888899999999998


Q ss_pred             ccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         179 SPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       179 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      + ++.  ............   ++.|.++...+.+ .++...|.++||.++.+.  .+.+|+|++..+|++|++++++.|
T Consensus       279 ~-~~g~~~~~~~~~~rs~~---ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al  353 (361)
T 3m5u_A          279 L-SNGFYKGHADKKDRSLM---NVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFM  353 (361)
T ss_dssp             T-STTSEEESSCGGGBCSS---EEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred             H-CCCeeeccCCHHHcCCe---EEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHH
Confidence            8 652  111110112234   6888887411234 578889999999987652  256999999999999999999999


Q ss_pred             HHHHHHH
Q psy6547         255 INTINTM  261 (266)
Q Consensus       255 ~~~~~~~  261 (266)
                      +++.++.
T Consensus       354 ~~~~~~~  360 (361)
T 3m5u_A          354 KEFQGKY  360 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.41  E-value=3.6e-12  Score=117.59  Aligned_cols=225  Identities=11%  Similarity=0.001  Sum_probs=144.1

Q ss_pred             CHHHHHHHHhcCCCEE---EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc-ccc--CCC
Q psy6547          27 DVDALEAKLKSNPNIC---AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--EDV  100 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~---~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~-~~~--~~~  100 (266)
                      |+++|+++++++++++   +++++.. |++|.+.    ++++|.++|+.++  +++||+|++....+..+. ...  .+.
T Consensus       281 d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~----dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~  353 (715)
T 3n75_A          281 QHATIAKRVKETPNATWPVHAVITNS-TYDGLLY----NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGR  353 (715)
T ss_dssp             SHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEE----CHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSC
T ss_pred             CHHHHHHHHhhCcCccCceEEEEECC-CCCCccC----CHHHHHHHhCcCc--EEEccccccccccCCccccccccccCc
Confidence            7999999998755444   4554444 7788886    8889999998764  799999964322222211 111  121


Q ss_pred             CcCe-----eeecccccCCchhhhhheecHHhh-hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHH
Q psy6547         101 RPDI-----VILGKALSGGLYPISAVLADDEVM-GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMG  170 (266)
Q Consensus       101 ~~d~-----~~~sK~~~~g~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~  170 (266)
                      .+|+     .+++|++++- -..|++.++.++. +.+.. .....+.+++++.+++..++++.+..   +++++++.++.
T Consensus       354 ~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a  432 (715)
T 3n75_A          354 VEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERA  432 (715)
T ss_dssp             CTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            2453     4589998762 2356776654321 11111 12344556788889999999988763   45889999999


Q ss_pred             HHHHHHhhccccc-------CCCccc------EEe--------------cCc---cceeeEEEEeeC--------ccchH
Q psy6547         171 EIFRSELSSPANK-------SKASFK------LSS--------------GGL---KKSINTLILSVS--------AILEV  212 (266)
Q Consensus       171 ~~l~~~l~~~~~~-------~~~~~~------~~~--------------~g~---~~~~~~~~~~~~--------~~~~~  212 (266)
                      +++++.|++ +..       ..+...      ...              .+.   +--=+.+.++.-        .+..+
T Consensus       433 ~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g  511 (715)
T 3n75_A          433 IKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPA  511 (715)
T ss_dssp             HHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCH
T ss_pred             HHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcH
Confidence            999999887 431       000000      000              000   000133333321        14567


Q ss_pred             HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ..+.+.|+++||.+.-.+...+-+-++...|+++++++++.|.++-+.
T Consensus       512 ~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          512 SIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             HHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            789999999999999888888888888899999999999999877553

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.41  E-value=5.2e-12  Score=109.52  Aligned_cols=227  Identities=11%  Similarity=0.076  Sum_probs=134.4

Q ss_pred             CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-CcC
Q psy6547          27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPD  103 (266)
Q Consensus        27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~~d  103 (266)
                      |++++|++|++++  .+.+|+.++.++-++.+    +++++|+++|++||+++++||+|.........+....... ..|
T Consensus       201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~----ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD  276 (501)
T 3hl2_A          201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVP----DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID  276 (501)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC----CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHhcCCCcEEEEEecCCCCCCccc----ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence            7999999998753  45666665544433343    3999999999999999999999954322222222222222 267


Q ss_pred             eeeec--ccccCCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHh
Q psy6547         104 IVILG--KALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL  177 (266)
Q Consensus       104 ~~~~s--K~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l  177 (266)
                      +++.|  |.+-.. ++.+.+.. ++++++.+... .-.+-+++|  ....+.++..+..   .++.++..++.++++++|
T Consensus       277 ~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~-yPGr~S~Sp--sldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L  352 (501)
T 3hl2_A          277 AFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKM-YPGRASASP--SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQI  352 (501)
T ss_dssp             EEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHT-SCSCBCSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccceee-cCceEEEeCCHHHHHHHHHh-CCCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66644  876533 22223323 55666554321 112222333  2223334444444   457777888999999999


Q ss_pred             hccccc-CCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCcee----ccC--------------------
Q psy6547         178 SSPANK-SKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVT----KPI--------------------  229 (266)
Q Consensus       178 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~----~~~--------------------  229 (266)
                      ++ +.. ..... .....+|. -+.+.+....   +.+...+...|..++|-.    .++                    
T Consensus       353 ~~-la~~~ge~l-l~~~~n~i-s~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~  429 (501)
T 3hl2_A          353 KK-LSEAYNERL-LHTPHNPI-SLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNY  429 (501)
T ss_dssp             HH-HHHTTTCCB-CCCTTCSS-EEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCC
T ss_pred             HH-HHHhcChhh-cCCCCCce-eEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCC
Confidence            98 543 11111 11111211 2444443211   224567778888886642    221                    


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ...++-++....++++|+|.++++|++.+.+..++
T Consensus       430 ~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~  464 (501)
T 3hl2_A          430 PCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE  464 (501)
T ss_dssp             SSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            12689999999999999999999999999887544

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.32  E-value=2.4e-11  Score=106.11  Aligned_cols=224  Identities=11%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-CcC
Q psy6547          27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPD  103 (266)
Q Consensus        27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~~d  103 (266)
                      |+++|+++|++++  .+.+|+++|.++.+|.+-    ++++|+++|++||+++++|++|.+.......+....... ..|
T Consensus       183 d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d----dl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD  258 (450)
T 3bc8_A          183 DLKAVEAKIQELGPEHILCLHSTTACFAPRVPD----RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID  258 (450)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC----CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHhcCCCCEEEEEEECCcCCCceec----CHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCC
Confidence            8999999998754  566677776665555554    999999999999999999999965322222111111211 355


Q ss_pred             eee--ecccccCCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHh
Q psy6547         104 IVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN---MIENAYKMGEIFRSEL  177 (266)
Q Consensus       104 ~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l  177 (266)
                      .++  ..|++... ...+++.. +++..+.+..... ..-+.+| ++. ....+..+..++   +.++..++.+++++++
T Consensus       259 ~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~~~-g~~s~Sp-sL~-l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l  334 (450)
T 3bc8_A          259 AFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYP-GRASASP-SLD-VLITLLSLGCSGYRKLLKERKEMFVYLSTQL  334 (450)
T ss_dssp             EEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSC-SCBCSHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCccCCCch-hccEEEEecCHHHHHHHHHHhh-cCCcccH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555  55988865 55566664 4455544432111 1112233 222 222222233333   3444567788888888


Q ss_pred             hcccc---c-CCCcccEEecCccceeeEEEEee---CccchHHHHHHHHHHCC------------------------cee
Q psy6547         178 SSPAN---K-SKASFKLSSGGLKKSINTLILSV---SAILEVYDVCIKMKDAG------------------------LVT  226 (266)
Q Consensus       178 ~~~~~---~-~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g------------------------i~~  226 (266)
                      ++ +.   . ..+..  ...+.  + ..+.+..   ....|..++.-.+...|                        +.+
T Consensus       335 ~~-~~~~~g~~~l~~--~~~~~--~-~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~  408 (450)
T 3bc8_A          335 KK-LAEAHNERLLQT--PHNPI--S-LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHA  408 (450)
T ss_dssp             HH-HHHHTTCCBCCC--TTCSS--E-EEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTS
T ss_pred             Hh-hHHhcCceecCC--ccCCC--c-ceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCee
Confidence            87 44   2 11111  00111  0 1121211   00235666666666554                        222


Q ss_pred             ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         227 KPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       227 ~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ......++-+.++...+++++++++++|++...+..++
T Consensus       409 E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          409 DNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             SCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            23355788888899999999999999999987765443

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.05  E-value=5.6e-09  Score=90.35  Aligned_cols=210  Identities=17%  Similarity=0.192  Sum_probs=138.8

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcc-cccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKL-LAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~-~~~~~~~~~~d~  104 (266)
                      |.++++++.++. ++++|++-....+.  .    -++++++++|++.|.+|++|-+| +|+--.|.. -++.    ..|+
T Consensus       191 Dyd~~~~~A~~~-kPklIi~G~SaY~r--~----id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADv  259 (490)
T 3ou5_A          191 DYNQLALTARLF-RPRLIIAGTSAYAR--L----IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADI  259 (490)
T ss_dssp             CHHHHHHHHHHH-CCSEEEECCSSCCS--C----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSE
T ss_pred             cHHHHHHHHhhc-CCCeEEECCccCcc--c----cCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceE
Confidence            789999888665 57888887543221  2    28999999999999999999999 554222221 1121    1566


Q ss_pred             ee--ecccccCCchhhhhheecHH---------------hhhccC----CCCCCCCCCCcHHHHHHHHHHHHHHhh---c
Q psy6547         105 VI--LGKALSGGLYPISAVLADDE---------------VMGTLV----PGTHGSTYGGNPLACKLAMTALDVILE---E  160 (266)
Q Consensus       105 ~~--~sK~~~~g~~~~g~~~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~---~  160 (266)
                      ++  -.|+|.|+  |.|.++++++               +.+.++    +..+++..   .-..++...++....+   .
T Consensus       260 VTtTTHKTLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~---~h~IAAkAVaf~Ea~~p~fk  334 (490)
T 3ou5_A          260 VTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPH---NHAIAAVAVALKQACTPMFR  334 (490)
T ss_dssp             EEEESSSTTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCC---HHHHHHHHHHHHHHHSHHHH
T ss_pred             EeccccccccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccch---HHHHHHHHHHHHHHHhHhHH
Confidence            66  55999874  7888887653               122221    22222222   1122232233433222   3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----c-----CCC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----P-----ISN  231 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~-----~~~  231 (266)
                      ++.+++.++++.|.+.|.+ .+...+     ..|.++.++.+++... +.+..+..+.|.+.||.+.    |     ...
T Consensus       335 ~Ya~qVv~NAkaLA~~L~~-~G~~vv-----sGgTdnHlvLvDl~~~-g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~  407 (490)
T 3ou5_A          335 EYSLQVLKNARAMADALLE-RGYSLV-----SGGTDNHLVLVDLRPK-GLDGARAERVLELVSITANKNTCPGDRSAITP  407 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCEEG-----GGSCSSSEEEEECGGG-TCCHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCeee-----cCCCCceEEEEecccc-CCCHHHHHHHHHHcCcEECCCCCCCCCCCCCC
Confidence            5888999999999999887 544333     3455666888887652 4567888888999999875    2     234


Q ss_pred             CEEEEecc----CCCCHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPA----LNITEQELREGLDIIINTIN  259 (266)
Q Consensus       232 ~~iR~~~~----~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +.||+..+    ..+.++|++++.+.|.++++
T Consensus       408 SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            68999875    57889999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	3e-71
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-69
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	2e-57
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-50
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	4e-37
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	6e-33
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	5e-26
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-16
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	1e-12
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	3e-10
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	8e-09
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	6e-05

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  222 bits (566), Expect = 3e-71
 Identities = 143/258 (55%), Positives = 191/258 (74%), Gaps = 6/258 (2%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
           +  +TDPTSY+ FGP MPG++IIPYND+ ALE  L+ +PN+ AFMVEPIQGEAG VVPD 
Sbjct: 150 ISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDP 208

Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
           GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SA
Sbjct: 209 GYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSA 268

Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
           VL DD++M T+ PG H STYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL   
Sbjct: 269 VLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL 328

Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
            +    + +    GL   +N +++  +   + + VC++++D GL+ KP   +IIR +P L
Sbjct: 329 PSDVVTAVR--GKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPL 383

Query: 241 NITEQELREGLDIIINTI 258
            I E ELRE ++II  TI
Sbjct: 384 VIKEDELRESIEIINKTI 401

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  218 bits (555), Expect = 1e-69
 Identities = 123/246 (50%), Positives = 177/246 (71%), Gaps = 5/246 (2%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
           FGP  P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL+ V  +C +
Sbjct: 160 FGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 218

Query: 73  YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
           YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA+D++M  + 
Sbjct: 219 YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK 278

Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
           PG HGSTYGGNPLA  + + AL+V++ E + ENA K+G  F   L      SK    +  
Sbjct: 279 PGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG 338

Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
            GL   +  +    + ++ V D+C+K+K+ GL+T+ + +  IRL+P L IT+++L E  +
Sbjct: 339 KGL---LCAIEF-KNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTE 394

Query: 253 IIINTI 258
           II+ T+
Sbjct: 395 IIVKTV 400

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  186 bits (472), Expect = 2e-57
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 11/254 (4%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
           + +T +P     F P +     IPYNDV+AL+  +  +    A ++EP+QGE G      
Sbjct: 140 LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEPVQGEGGVRPATP 197

Query: 61  GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
            +L+  R +  +   L I DE+QTG+GRTGK  A  +  + PDI+ L KAL GG  P+  
Sbjct: 198 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGV 256

Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
            +  +EV  ++  G HG+T+GGNPLA    + A+  +    + E A ++G  F  +L + 
Sbjct: 257 AVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI 316

Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
            +      +    GL   +  L L   A      +    K+  ++       +IR  P L
Sbjct: 317 PSPKIREVR--GMGL---MVGLELKEKA---APYIARLEKEHRVLALQAGPTVIRFLPPL 368

Query: 241 NITEQELREGLDII 254
            I +++L   ++ +
Sbjct: 369 VIEKEDLERVVEAV 382

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  168 bits (425), Expect = 4e-50
 Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 14/258 (5%)

Query: 16  HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
                       +  +     +  +I A ++EP+QGE G       +++++RALC ++ +
Sbjct: 174 LHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 233

Query: 76  LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT 135
           + IADEVQ+G GRTG L A+    V PD+    K+++GG +P++ V    EVM  + PG 
Sbjct: 234 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG 292

Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL 195
            G TY GNP+AC  A+  L V  +EN+++ A  +G+  +  L + A K      +   G 
Sbjct: 293 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 352

Query: 196 KKSINTLILSVSAILEVYD------VCIKMKDAGLVTKPI--SNNIIRLSPALNITEQEL 247
              +  + L         D      +  + +D GL+        N++R+   L I + ++
Sbjct: 353 ---MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 409

Query: 248 REGLDIIINTINTMAAKK 265
           R+GL+II    +   AK+
Sbjct: 410 RQGLEIISQCFD--EAKQ 425

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  133 bits (336), Expect = 4e-37
 Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 7   PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKK 65
           P+S              PYND++A++A    NP  I   ++EPI G +G +VPD G+L+ 
Sbjct: 165 PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEG 224

Query: 66  VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
           +R +  +++ L + DEV TG  R           V PD+  LGK + GG  P+ A     
Sbjct: 225 LREITLEHDALLVFDEVMTG-FRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKR 282

Query: 126 EVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
           E+M  + P        T  GNPLA    +  L+++ +    E   ++ +     L + A 
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQ 342

Query: 183 KSKASFKLSSGGLKKSINTLILSV--------SAILEVYDVCIKMKDAGLVTKPISNNII 234
           ++  +                  V        S + +       M + G+   P  +   
Sbjct: 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP--SQFE 400

Query: 235 RLSPALNITEQELREGLDIIINTINTM 261
               +L  TE+++   L      ++ +
Sbjct: 401 AGFTSLAHTEEDIDATLAAARTVMSAL 427

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (306), Expect = 6e-33
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 14/257 (5%)

Query: 9   SYNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGA-VVPDDGYLKKV 66
           +     P           D+      + ++   I A ++EPI   AG   +    +LK++
Sbjct: 172 NLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRI 231

Query: 67  RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDE 126
           R +C +  +L IADE+ TG GRTGKL A  + ++ PDI+ LGKAL+GG   +SA L   E
Sbjct: 232 RKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTRE 291

Query: 127 VMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181
           V  T+  G      HG T+ GNPLAC  A  +L ++   +  +    +    R +L+   
Sbjct: 292 VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPAR 351

Query: 182 NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN 241
           +    +     G +       ++  +  + +  +     + G+  +P    +I L P   
Sbjct: 352 DAEMVADVRVLGAI------GVVETTHPVNMAALQKFFVEQGVWIRP-FGKLIYLMPPYI 404

Query: 242 ITEQELREGLDIIINTI 258
           I  Q+L+     +   +
Sbjct: 405 ILPQQLQRLTAAVNRAV 421

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  103 bits (256), Expect = 5e-26
 Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 8/257 (3%)

Query: 10  YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69
           Y         Y+ +   D        +S+ N+ AF+ EPI    G +   DGY+  ++  
Sbjct: 171 YRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 230

Query: 70  CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMG 129
           C    +L I DE QTG+GRTG + A   + V PDI+ L K L  GL   + V +      
Sbjct: 231 CEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEER 290

Query: 130 TLVPGT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
               G    +T+  +PL   + +  LDV+  + ++  A  MG+  R  L     +     
Sbjct: 291 AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIG 350

Query: 189 KLSSGGL------KKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALN 241
            +   GL       K   T   +     ++   C+ +     +V  P    + R++P L 
Sbjct: 351 DVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLT 410

Query: 242 ITEQELREGLDIIINTI 258
           ++E E+  GL ++   I
Sbjct: 411 VSEDEIDLGLSLLGQAI 427

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 75.8 bits (185), Expect = 2e-16
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 11/251 (4%)

Query: 10  YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVV-PDDGYLKKVRA 68
             EF             +V+ L  K +      A ++       G      D + +K+R 
Sbjct: 217 LEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRD 276

Query: 69  LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
           +  ++   F+ DEVQTG G TGK  A  +  +     ++  +       ++      E  
Sbjct: 277 ISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSK----KMMTGGFFHKEEF 332

Query: 129 GTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
               P    +T+ G+P    L    +++I  E+++ NA   G++  + L     +     
Sbjct: 333 RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI 392

Query: 189 KLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 247
               G G      +      +I     +    ++ G++     +  IR  P L   +   
Sbjct: 393 SRVRGRGT---FCSFDTPDESIRN--KLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHA 447

Query: 248 REGLDIIINTI 258
              L+I  + +
Sbjct: 448 HLFLNIFSDIL 458

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 24/197 (12%)

Query: 5   TDPTSYNEFGPHMPGYNIIPYN-DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDG 61
           T    Y +             N D++ LE  ++     N+   +       AG       
Sbjct: 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLA 204

Query: 62  YLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI-------------L 107
            LK + ++  +Y++  + D  +        K     Y+D   + +               
Sbjct: 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA 264

Query: 108 GKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA-------LDVILEE 160
            K     +  +  +  D          T      G P    L   A       L   +  
Sbjct: 265 KKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL 324

Query: 161 NMIENAYKMGEIFRSEL 177
           + +       +     L
Sbjct: 325 DWLAYRIAQVQYLVDGL 341

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 44/308 (14%), Positives = 76/308 (24%), Gaps = 43/308 (13%)

Query: 1   MLITTDPTSYNEFGPHMPGYNIIP----YNDVDALEAKLKS--NPNICAFMVEPIQGEAG 54
            +      + N                   D+  L+  +      NI A +       AG
Sbjct: 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG 196

Query: 55  AVVPDDGYLKKVRALCSQYNVLFIADEVQT------GLGRTGKLLAIHYEDVRPDIVILG 108
                   LK+V  +  Q+ +  + D  +          R  K      ++V  D+    
Sbjct: 197 GQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA 256

Query: 109 KALS-----GGLYPISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAMTALD- 155
            AL+       L  I  ++A               VP     TYGG       AM     
Sbjct: 257 DALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLE 316

Query: 156 VILEENMIENAYKMGEIFRSELSSP---------ANKSKASFKLSSGGLKKSINTLILSV 206
              EE  +       +     L             +      K     +          +
Sbjct: 317 EGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVI 376

Query: 207 SAILEVY-----DVCIKMKDAGLVT---KPISNNIIRLS-PALNITEQELREGLDIIINT 257
           +A+         ++   +      T   K      +RL+      T   +    D +I  
Sbjct: 377 NALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436

Query: 258 INTMAAKK 265
               A  K
Sbjct: 437 KEKFATLK 444

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 9/240 (3%)

Query: 16  HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
                 + P +   A+  +    P      +E     +G  V     +K++  +  ++ +
Sbjct: 104 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI 163

Query: 76  LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT 135
               D  +         + +       D V+   +        S V+ D + +       
Sbjct: 164 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR 223

Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL 195
                G        A   + +    + ++  ++                      S    
Sbjct: 224 KMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFL--------ALKLKEIGYSVNPE 275

Query: 196 KKSINTLILSVSAI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
               N +IL    + +  +     ++++G++   +S+  IRL    +++  ++ E L+I 
Sbjct: 276 DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIF 335

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 26/244 (10%), Positives = 67/244 (27%), Gaps = 11/244 (4%)

Query: 13  FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
                P   +      +    K+          V   Q      +     ++ +  +C  
Sbjct: 107 MTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166

Query: 73  YNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
            ++    D  +    L   G   A        D +  G   +G L   + VL +  +   
Sbjct: 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 226

Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL 190
           +      + +  + +     ++A       + +           ++  +   +     ++
Sbjct: 227 MSYRRKRAGHLSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV 283

Query: 191 SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
             G         IL       + D  +K    G        N++R   +   T +++   
Sbjct: 284 LGGT-----EANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHL 337

Query: 251 LDII 254
           L+ +
Sbjct: 338 LNQV 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.93
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.93
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.93
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.93
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.92
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.91
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.9
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.9
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.89
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.89
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.89
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.89
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.88
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.88
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.87
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.87
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.87
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.87
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.87
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.86
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.86
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.84
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.82
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.8
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.8
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.8
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.79
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.79
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.78
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.78
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.77
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.76
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.75
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.75
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.74
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.73
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.72
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.71
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.69
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.69
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.67
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.63
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.62
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.6
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.6
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.6
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.58
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.58
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.57
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.53
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.47
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.46
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.43
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.42
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.39
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.37
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.36
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.36
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.31
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.3
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.27
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.26
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.25
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.23
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.22
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.16
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.16
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.15
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.13
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.11
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.09
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.08
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.06
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.05
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.0
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.94
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.91
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.88
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	84.86

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-43  Score=305.52  Aligned_cols=253  Identities=57%  Similarity=0.982  Sum_probs=235.5

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +.+.+|..++.|.|..+++..+|++|++++++.++ ++++++|++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus       151 ~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~-~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  229 (404)
T d2byla1         151 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE  229 (404)
T ss_dssp             TTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHT-STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             ccCCCcccccCCCCCCCCeeEecccCHHHHHHhcC-CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeec
Confidence            56778888899999999999999999999999995 45899999999999999999999999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +++||+|+|..|+++.+|+.||+++++|++++|++|+|.+++++++++.+.+..+.+||+++|++++++.++|+.+++++
T Consensus       230 V~tGfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~  309 (404)
T d2byla1         230 IQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEEN  309 (404)
T ss_dssp             TTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998868999999999999999988999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      +.++++++.+++++.|.+ +..+.+.. +++.|+   ++.+.+.+.......+++++|+++|+++.+.+++.+|++|++.
T Consensus       310 l~~~~~~~g~~l~~~l~~-l~~~~i~~-vRg~Gl---~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~  384 (404)
T d2byla1         310 LAENADKLGIILRNELMK-LPSDVVTA-VRGKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLV  384 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHT-SCTTTEEE-EEEETT---EEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTT
T ss_pred             chhhhhHhhHHHHHHHHh-hcccccee-eeeccc---EEEEEEecCCchhHHHHHHHHHhCCeEEecCCCCEEEEECCcC
Confidence            999999999999999999 66665555 899999   9999987654556788999999999999987789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTINT  260 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|++++|+++++|++++.+
T Consensus       385 it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         385 IKEDELRESIEIINKTILS  403 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999864

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.7e-41  Score=288.12  Aligned_cols=246  Identities=30%  Similarity=0.504  Sum_probs=228.2

Q ss_pred             CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE   81 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De   81 (266)
                      +++++|..++.|.|...++..+|+||+++|++.+  .+++++|++||+++++|..+++++++++|+++|++||+++|+||
T Consensus       141 ~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~--~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  218 (387)
T d1vefa1         141 SVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE  218 (387)
T ss_dssp             HTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC--CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             eccCCccccCCCCCCCCCceEeCCCCHHHHHHhc--CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecc
Confidence            4677888889999999999999999999999999  45799999999999999999999999999999999999999999


Q ss_pred             cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547          82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +++||||+|..+.++.+++.||+++++|++++| ++++.+++.++.++.+....+++||++||++++++.++|+.+++++
T Consensus       219 V~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG-~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~  297 (387)
T d1vefa1         219 IQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR  297 (387)
T ss_dssp             TTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCccCCCcccccCCcCCceeeecccCCCC-ccccccccceeeeeccccCCccccCCCCcchhhhcccchhhccccc
Confidence            999999999999999999999999999999999 8999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN  241 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~  241 (266)
                      +.+++++..++++++|++ +..+.+.. +++.|+   ++.+++.+.   ....+.+.+.++|+++.+.+++.+|++|++.
T Consensus       298 ~~~~v~~~g~~l~~~L~~-l~~~~v~~-vrg~Gl---~~~ie~~~~---~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~  369 (387)
T d1vefa1         298 LWERAAELGPWFMEKLRA-IPSPKIRE-VRGMGL---MVGLELKEK---AAPYIARLEKEHRVLALQAGPTVIRFLPPLV  369 (387)
T ss_dssp             THHHHHHHHHHHHHHHHT-SCCTTEEE-EEEETT---EEEEEESSC---SHHHHHHHHHHHCEECEESSTTEEEECCCTT
T ss_pred             ccchHhhhhHHHHHHHHh-cCCCceEE-Eeecce---EEEEEEeCC---chHHHHHHHHHCCCeEEecCCCEEEEECCcc
Confidence            999999999999999998 66666665 899999   999999762   3566777888999998888889999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIIINTI  258 (266)
Q Consensus       242 ~t~~~i~~~~~~l~~~~  258 (266)
                      +|++++++++++|++++
T Consensus       370 it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         370 IEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999986

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=4.6e-40  Score=285.47  Aligned_cols=254  Identities=49%  Similarity=0.897  Sum_probs=217.9

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~   82 (266)
                      .+..+..+..+.|..+.+..+|+++.++++..++ ++++++|++||+++++|.+.++++++++|+++|++||+++|+||+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV  228 (404)
T d1z7da1         150 ASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEV  228 (404)
T ss_dssp             ----------------CEEEECTTCHHHHHHHHT-STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred             cccccccccCCCCCCccccccccchHHHHHHHhc-CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence            3455666677889999999999999999999884 348999999999999999999999999999999999999999999


Q ss_pred             ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547          83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  162 (266)
                      ++||+|+|..|+++.+|+.||++++||++++|++|+|.+++++++++.+....+++||++||++++++.++|+.+.++++
T Consensus       229 ~tGfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~  308 (404)
T d1z7da1         229 QTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKL  308 (404)
T ss_dssp             TTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred             ccCCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchh
Confidence            99999999999999999999999999999987689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  242 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~  242 (266)
                      .+++.+..+.+.+++.+.+....+...+++.|+   ++.+.+.++ .....+++++|.++|+++.+.+++.|||+|++.+
T Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl---~~~i~~~~~-~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~i  384 (404)
T d1z7da1         309 CENAEKLGGPFLENLKRELKDSKIVRDVRGKGL---LCAIEFKNE-LVNVLDICLKLKENGLITRDVHDKTIRLTPPLCI  384 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETT---EEEEEECTT-TCCHHHHHHHHHHTTEECCEETTTEEEECCCTTC
T ss_pred             hhhhccchhHHHHHHHHHHhcCCCeEEEEeeCc---EEEEEEcCC-cccHHHHHHHHHhCCeEEecCCCCEEEEECCcCC
Confidence            999999999999888874554333334899999   999999863 2346779999999999999988899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINTM  261 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~~  261 (266)
                      |++++++++++|+++++++
T Consensus       385 t~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         385 TKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999874

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-37  Score=269.29  Aligned_cols=220  Identities=32%  Similarity=0.603  Sum_probs=199.3

Q ss_pred             CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhh
Q psy6547          39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI  118 (266)
Q Consensus        39 ~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~  118 (266)
                      .++++|++||+++++|.+.+++++++.|+++|++||+++|+||+++||+|+|..++++.+|+.||++++||++++| +|+
T Consensus       197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG-~P~  275 (425)
T d1sffa_         197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPL  275 (425)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTS-SCC
T ss_pred             cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCC-cce
Confidence            3899999999999999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccce
Q psy6547         119 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKS  198 (266)
Q Consensus       119 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~  198 (266)
                      |.+++++++++.+....+++||+++|++++++.++|+.++++++.+++.+..+++++.+++......+...+++.|+   
T Consensus       276 ~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl---  352 (425)
T d1sffa_         276 AGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA---  352 (425)
T ss_dssp             EEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETT---
T ss_pred             EEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcccc---
Confidence            99999999999999889999999999999999999999999999999999999999999984444334344899999   


Q ss_pred             eeEEEEeeCc------cchHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         199 INTLILSVSA------ILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       199 ~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      ++.+.+....      ..-...+.++|.++|+++.+.  ..+.+|++|++.+|+++|++++++++++++++.
T Consensus       353 ~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         353 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             EEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999986421      123567899999999998875  358899999999999999999999999998864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-37  Score=266.25  Aligned_cols=228  Identities=29%  Similarity=0.473  Sum_probs=203.9

Q ss_pred             CCHHHHHHHHhc-CCCEEEEEEcccc-CCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcC
Q psy6547          26 NDVDALEAKLKS-NPNICAFMVEPIQ-GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD  103 (266)
Q Consensus        26 ~d~~~l~~~l~~-~~~~~~i~~~~~~-~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d  103 (266)
                      ++++++++.+++ .+++++|++||+. +.+|.++++++++++|+++|++||+++|+||+++||||+|..++++.+++.||
T Consensus       189 ~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PD  268 (429)
T d1s0aa_         189 RDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD  268 (429)
T ss_dssp             GGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred             hhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccc
Confidence            357777777765 4489999999986 66677788999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccCCchhhhhheecHHhhhccCC-----CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Q psy6547         104 IVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~  178 (266)
                      +++++|++++|++|++.+++++++.+.+..     ..+.+||+++|++++++.++|+.++++++.+++++..++++++|+
T Consensus       269 i~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~  348 (429)
T d1s0aa_         269 ILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA  348 (429)
T ss_dssp             EEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHG
T ss_pred             ccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHH
Confidence            999999998776899999999998877643     357899999999999999999999999999999999999999999


Q ss_pred             ccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         179 SPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       179 ~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      + +.. +.+.. +++.|+   |+.+++..  ..+..++.+.|+++|+++.+. ++.+|++|++.+|+++||+++++|+++
T Consensus       349 ~-l~~~~~v~~-vrg~Gl---~~~~e~~~--~~~~~~~~~~~~~~Gl~~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~a  420 (429)
T d1s0aa_         349 P-ARDAEMVAD-VRVLGA---IGVVETTH--PVNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRA  420 (429)
T ss_dssp             G-GGGCTTEEE-EEEETT---EEEEEESS--CBCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             H-hccCCceEE-Eeeccc---EEEEEecC--cccHHHHHHHHHHCCcEEEec-CCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence            9 544 45555 899999   99999977  456788999999999999987 579999999999999999999999999


Q ss_pred             HHHH
Q psy6547         258 INTM  261 (266)
Q Consensus       258 ~~~~  261 (266)
                      +++.
T Consensus       421 l~e~  424 (429)
T d1s0aa_         421 VQDE  424 (429)
T ss_dssp             TSSG
T ss_pred             HHhh
Confidence            8765

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=5.4e-35  Score=255.00  Aligned_cols=238  Identities=24%  Similarity=0.366  Sum_probs=203.0

Q ss_pred             CCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   94 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~   94 (266)
                      ...+...++++|++++|+++++++ ++++|++||+++++|.++++++++++|+++|++||+++|+||+++|| ++|..+.
T Consensus       174 ~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~  252 (427)
T d2gsaa_         174 TTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGV  252 (427)
T ss_dssp             HHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCH
T ss_pred             CccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccch
Confidence            345778899999999999997754 89999999999999999999999999999999999999999999999 7798899


Q ss_pred             cccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547          95 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  171 (266)
Q Consensus        95 ~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  171 (266)
                      .+.+++.||+++++|+++|| +++|.+++++++++.+..   ..+++||++||++++++.++|+.++++++.++++++.+
T Consensus       253 ~~~~gi~PDi~~~gK~lggG-~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~  331 (427)
T d2gsaa_         253 QEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITK  331 (427)
T ss_dssp             HHHTTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred             HHhcCCCHHHHhhhhccCCC-cceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHH
Confidence            99999999999999999999 899999999999988864   36788999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547         172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      ++++.|++............+.+.   ++.+.+....           ......+.+.|+++||++.|.....  +.+++
T Consensus       332 ~l~~~L~~l~~~~~~~~~v~~~gg---m~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~--~~~~l  406 (427)
T d2gsaa_         332 RLSDGLLAIAQETGHAACGGQVSG---MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA--GFTSL  406 (427)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEETT---EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC--EECCT
T ss_pred             HHHHHHHHHHhhcCCCcEEcccCC---eEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcc--eeCCC
Confidence            999999983344444433566666   7777653211           0113467888999999998865443  34678


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTINT  260 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .+|++|||++++++++++++
T Consensus       407 ~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         407 AHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             TCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=2.1e-34  Score=251.74  Aligned_cols=250  Identities=25%  Similarity=0.404  Sum_probs=209.3

Q ss_pred             CcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547           8 TSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA   68 (266)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~   68 (266)
                      ..+..+.|...++..++.+.                 ++.++..+.+  ..++++|++||+++++|.+.++++++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~  229 (431)
T d1zoda1         150 AGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKR  229 (431)
T ss_dssp             SCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHH
T ss_pred             ccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHH
Confidence            34566778888888776542                 2334333322  3489999999999999999999999999999


Q ss_pred             HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHH
Q psy6547          69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLA  146 (266)
Q Consensus        69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~  146 (266)
                      +|++||+++|+||+++||+|+|..|+.+.+|+.||+++++|++++| ++++.+++.++..+.+.  ...+++|++++|++
T Consensus       230 lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG-~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~  308 (431)
T d1zoda1         230 KCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLP  308 (431)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHH
T ss_pred             HHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc-cccceeeeeecchhhhhcccccccCCCCCCcch
Confidence            9999999999999999999999999999999999999999999999 89999999888776553  33578999999999


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHH
Q psy6547         147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMK  220 (266)
Q Consensus       147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~  220 (266)
                      ++++.++|+.++.+++.++..+..+++.+.+.+.+....+...+++.|+   |+.+++....      .....++.++|.
T Consensus       309 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Gl---m~~ie~~~~~~~~~~~~~~~~~i~~~~~  385 (431)
T d1zoda1         309 AAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGL---LLGVEIVKDRRTKEPADGLGAKITRECM  385 (431)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT---EEEEEEEEETTTTEECTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecce---EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999998884444344444999999   9999885421      123577899999


Q ss_pred             HCCcee----ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVT----KPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~----~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++|+..    .+..++.||++|++.+|++++|+++++|++++++.
T Consensus       386 ~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         386 NLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             HTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999753    44567899999999999999999999999999875

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.1e-34  Score=252.22  Aligned_cols=247  Identities=20%  Similarity=0.240  Sum_probs=203.9

Q ss_pred             CccCCcCcccccCCCCCCceeecC------------------CCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCC
Q psy6547           2 LITTDPTSYNEFGPHMPGYNIIPY------------------NDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPD   59 (266)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~~~~~------------------~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~   59 (266)
                      ++++++..++.+.|..........                  ++.++++++++.    .+++++|++||+++.+|.+.++
T Consensus       188 s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~  267 (461)
T d1ohwa_         188 ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHAS  267 (461)
T ss_dssp             HTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCC
T ss_pred             cccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCch
Confidence            455666666666555544432211                  124566666542    3489999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC--CcCeeeecccccCCchhhhhheecHHhhhccCCCCCC
Q psy6547          60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG  137 (266)
Q Consensus        60 ~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~--~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~  137 (266)
                      ++++++|+++|++||+++|+||+++||||+|..|.++.+++  .||+++++|++++|.++.+      ..+.......+.
T Consensus       268 ~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~------~~~~~~~~~~~~  341 (461)
T d1ohwa_         268 DDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK------EEFRPNAPYRIF  341 (461)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEEC------GGGSCSSTTSSC
T ss_pred             hhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccccccc------cccccccccccc
Confidence            99999999999999999999999999999999999999988  5999999999997733222      222333455789


Q ss_pred             CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-C-CCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-S-KASFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      +||.++|++++++.++|+.++++++.+++++..+++.++|+++... + .+.. +++.|+   ++.+++++  .....++
T Consensus       342 ~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~-vrG~Gl---~~~ie~~~--~~~~~~i  415 (461)
T d1ohwa_         342 NTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISR-VRGRGT---FCSFDTPD--ESIRNKL  415 (461)
T ss_dssp             CSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEE-EEEETT---EEEEECSS--HHHHHHH
T ss_pred             cccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-eeeeeE---EEEEEcCC--HHHHHHH
Confidence            9999999999999999999999999999999999999999983332 2 3445 899999   99999987  5567889


Q ss_pred             HHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       216 ~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ++.|.++|+++.+.+++.|||.|++++|++++++++++|++++++
T Consensus       416 ~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         416 ISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999988899999999999999999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=3.9e-26  Score=196.49  Aligned_cols=241  Identities=15%  Similarity=0.084  Sum_probs=171.8

Q ss_pred             cCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +.+...+..++.+++.++.       .|+++|++.+  .+++++++++.++|++|.+ ++.+.+++|.++|++||++||+
T Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~~~~P~NPtG~~-~s~~~~~~l~~~a~~~~~~vi~  197 (388)
T d1gdea_         121 VSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV--TDKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVIS  197 (388)
T ss_dssp             TTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhC--ccCCeEEEECCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEE
Confidence            3333344456777888874       3789999988  4568888888788889987 9999999999999999999999


Q ss_pred             eccccCcCCcCccc-ccccC-C---CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLL-AIHYE-D---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        80 De~~~~~~~~g~~~-~~~~~-~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      ||+|.++...+..+ ..... +   ....+.++||.++ +| +|+||+++++++.+.+...........+.+.+.++..+
T Consensus       198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (388)
T d1gdea_         198 DEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKA  276 (388)
T ss_dssp             ECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHH
T ss_pred             EcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhhhhhccccccccccccchhhHHHH
Confidence            99998774443321 11111 1   2233455999998 89 99999999998887776555556666777777777666


Q ss_pred             HHHHhh----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceecc
Q psy6547         154 LDVILE----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKP  228 (266)
Q Consensus       154 l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~  228 (266)
                      ++....    +...+++.+....+.+.+.. .+   +....+..|.   ++|+.+++. +.+..+++++|+ ++||.+.|
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~p~gg~---fl~~~l~~~-~~~~~~~~~~ll~e~gV~v~P  348 (388)
T d1gdea_         277 LKDERSWKAVEEMRKEYDRRRKLVWKRLNE-MG---LPTVKPKGAF---YIFPRIRDT-GLTSKKFSELMLKEARVAVVP  348 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT---CCCCCCCBTT---EECCBCGGG-TCCHHHHHHHHHHHTCEECEE
T ss_pred             HhhccchhHHHHHHHHHHHhhhhhhhhhhh-cc---ccccCCCceE---EEEEECCCC-CCCHHHHHHHHHHhCCEEEEe
Confidence            642211    23444555555566666555 32   2221334577   888888642 357888998875 67999987


Q ss_pred             C------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         229 I------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       229 ~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +      +.+++|++.  ..+++++++++++|.+++++.
T Consensus       349 G~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         349 GSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLKER  385 (388)
T ss_dssp             GGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHHT
T ss_pred             chhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhc
Confidence            5      368999994  578999999999999999874

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.93  E-value=1.1e-25  Score=193.86  Aligned_cols=242  Identities=11%  Similarity=0.100  Sum_probs=175.0

Q ss_pred             cCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +++...+...+..++.++.       .|+++|++.+  .+++++++++.++|++|.+ ++.+.+++|.++|+++|++||+
T Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~--~~~~~~~~~~~P~NPTG~~-~~~~~~~~l~~~~~~~~~~iI~  201 (388)
T d1j32a_         125 VSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI--TPKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLS  201 (388)
T ss_dssp             THHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC--CCCCeEEEECCCCCCCCcc-cchhhhhhhhcccccCCeEEEc
Confidence            3333344445666777764       3789999988  4567888877678888887 9999999999999999999999


Q ss_pred             eccccCcCCcCccc-cccc-----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLL-AIHY-----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT  152 (266)
Q Consensus        80 De~~~~~~~~g~~~-~~~~-----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (266)
                      ||+|..+...+..+ +...     .+....+.++||.++ +| +|+||+++++++++.+.........+.+...+.++..
T Consensus       202 De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~  280 (388)
T d1j32a_         202 DEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIA  280 (388)
T ss_dssp             ECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHH
T ss_pred             hhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcch-hHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhh
Confidence            99997664433321 1111     112344566999998 89 9999999999998877654445556677778777766


Q ss_pred             HHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC
Q psy6547         153 ALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI  229 (266)
Q Consensus       153 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~  229 (266)
                      .+.....  ++.++.++++.+.+.+.|++ ..  .+....+..|.   ++|+.++.. ..+..+++++|+ ++||.+.|+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--g~~~~~p~gg~---~l~~~l~~~-~~~~~~~~~~ll~~~gV~v~pG  353 (388)
T d1j32a_         281 AYENSQDCVQEMLAAFAERRRYMLDALNA-MP--GLECPKPDGAF---YMFPSIAKT-GRSSLDFCSELLDQHQVATVPG  353 (388)
T ss_dssp             HHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CT--TCBCCCCCBTT---EECCBCGGG-TCCHHHHHHHHHHHHCEECEEG
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCEecCCCceE---EEEEECCCC-CCCHHHHHHHHHHhCCEEEEec
Confidence            6643221  24566677777788888877 42  23331344577   888887652 346778888876 669999885


Q ss_pred             ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 ----SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                          ..+++|++.  ..+++++++++++|+++++.+
T Consensus       354 ~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         354 AAFGADDCIRLSY--ATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             GGGTCTTBEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEE--eCCHHHHHHHHHHHHHHHHHh
Confidence                568999994  579999999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-24  Score=187.94  Aligned_cols=230  Identities=20%  Similarity=0.278  Sum_probs=176.9

Q ss_pred             CCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCC
Q psy6547          15 PHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGR   88 (266)
Q Consensus        15 ~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~   88 (266)
                      ....++..++|+|.+++++++++    ....++|++++++++.|.+.    ++++++++|++||+++|+||+|+.  ++.
T Consensus       148 ~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~----~L~~l~~L~~~~~a~LivDeah~~g~~g~  223 (401)
T d1fc4a_         148 LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVGE  223 (401)
T ss_dssp             TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC----CHHHHHHHHHHTTEEEEEECTTTTTTSST
T ss_pred             ccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchh----hhhHHHHHHhhcCcEEEehhhhccccccC
Confidence            45667889999999999998754    23568889999999999887    899999999999999999999964  233


Q ss_pred             cCcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547          89 TGKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILE-EN  161 (266)
Q Consensus        89 ~g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~-~~  161 (266)
                      .|.+ ....+++  .+|++  ++||+++|  .+.|++.+++++++.++..  ....+...+|...+++..+++.+.. ++
T Consensus       224 ~G~G-~~~~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~  300 (401)
T d1fc4a_         224 NGRG-SHEYCDVMGRVDIITGTLGKALGG--ASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSE  300 (401)
T ss_dssp             TSCC-HHHHTTCTTCCSEEEEESSSTTCS--SSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHH
T ss_pred             CCCc-cchhccCCCCCeEEEeeccccccc--CCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHH
Confidence            3333 2333443  35554  59999963  4578899999998877632  1223345667777788888887665 46


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEE
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNII  234 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~i  234 (266)
                      +++++.++.+++++.+.+ .+....       +.++|++.+.+.+  ...+.+++++|+++||++.+.       +...+
T Consensus       301 ~~~~l~~~~~~~~~~l~~-~g~~~~-------~~~~pIv~v~~~~--~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~l  370 (401)
T d1fc4a_         301 LRDRLWANARQFREQMSA-AGFTLA-------GADHAIIPVMLGD--AVVAQKFARELQKEGIYVTGFFYPVVPKGQARI  370 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCCBC-------CSSSSEEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEE
T ss_pred             HHHHHHHHHHHHHhhhcc-cCCccC-------CCCCCEEEEEECC--HHHHHHHHHHHHHCCceEEeECCCCCCCCCceE
Confidence            889999999999999887 443222       2245688888877  556778999999999998642       45679


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      |++++..+|++|||++++.|.++.+++
T Consensus       371 Ri~~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         371 RTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.2e-25  Score=193.12  Aligned_cols=238  Identities=17%  Similarity=0.142  Sum_probs=169.0

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      ++++...+...+.+++.++.       .|++++++.+  .+++++++++.++||+|.+ ++.+.+++|.++|++||++||
T Consensus       125 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~~~i~~~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~ii  201 (382)
T d1b5pa_         125 WVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI--TPRTKALVVNSPNNPTGAV-YPKEVLEALARLAVEHDFYLV  201 (382)
T ss_dssp             CTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEE
T ss_pred             cHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC--CCCCeEEEECCCCCCcchh-CCHHHHHHHHHHHHHcCeEEE
Confidence            33444445556777888863       2788888888  4578888877778889987 999999999999999999999


Q ss_pred             EeccccCcCCcCccccc--ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547          79 ADEVQTGLGRTGKLLAI--HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD  155 (266)
Q Consensus        79 ~De~~~~~~~~g~~~~~--~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  155 (266)
                      +||+|.++...+.....  ...+....+.++||.++ +| +|+||+++++++++.+.........+++.+.+.++..++.
T Consensus       202 ~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (382)
T d1b5pa_         202 SDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALT  280 (382)
T ss_dssp             EECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH
T ss_pred             EEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcH-hheEEEEECHHHHHHHHHHHHhcccCcccccccccccccc
Confidence            99999887555543322  11223344555999998 89 9999999999988776554445555566666555554443


Q ss_pred             HHhh-----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-
Q psy6547         156 VILE-----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-  229 (266)
Q Consensus       156 ~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-  229 (266)
                      ....     +..++.++++++.+.+.+.. .+   +....+..|.   ++|+.+... ..+...+.+.|+++||.+.|+ 
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g---~~~~~p~gg~---~~~~~~~~~-~~~~~~~~~~l~e~gV~v~PG~  352 (382)
T d1b5pa_         281 NQEASRAFVEMAREAYRRRRDLLLEGLTA-LG---LKAVRPSGAF---YVLMDTSPI-APDEVRAAERLLEAGVAVVPGT  352 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CCBCCCSBTT---EEEEECTTT-CSSHHHHHHHHHHTTEECEESG
T ss_pred             cccchhHHHHHHHHHHHhhhhHHHHHHhh-cC---CeEecCCceE---EEeEeCCCC-CCCHHHHHHHHHHCCEEEEeCc
Confidence            2111     22445555566666666665 43   2221334577   888888542 346788999999999999986 


Q ss_pred             ---CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         230 ---SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       230 ---~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                         ..+++|++  +..++++++++++||+++
T Consensus       353 ~F~~~~~iRis--~~~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         353 DFAAFGHVRLS--YATSEENLRKALERFARV  381 (382)
T ss_dssp             GGTCTTEEEEE--CCSCHHHHHHHHHHGGGG
T ss_pred             ccCCCCeEEEE--EcCCHHHHHHHHHHHHHh
Confidence               46899999  456899999999999875

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1e-24  Score=187.03  Aligned_cols=227  Identities=18%  Similarity=0.199  Sum_probs=174.4

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRT   89 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~   89 (266)
                      ......+++.++|+|++++++.+++.+ +.++|+++.+++++|.+.    ++++|.++|++||+++++||+|+.  ++..
T Consensus       139 ~~~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~----pl~~l~~l~~~~~~~livDeah~~gv~G~~  214 (383)
T d1bs0a_         139 ASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA----PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQ  214 (383)
T ss_dssp             HHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTTTTTSSGG
T ss_pred             cccCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCccc----chhHHHHHHHhcCcEEEeecceeeeecCCc
Confidence            345677899999999999999997754 678889999999999998    999999999999999999999943  2333


Q ss_pred             CcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhc---cH
Q psy6547          90 GKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEE---NM  162 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~---~~  162 (266)
                      |.+ ..+.++..+++++  +||++++   ..|+++++.+..+.++..  ....+...+|..++++.++++.++..   ..
T Consensus       215 g~G-~~~~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~  290 (383)
T d1bs0a_         215 GRG-SCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDAR  290 (383)
T ss_dssp             GCC-HHHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             ccc-hHHHcCCccccccccccccccc---cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHH
Confidence            333 2355676666655  7788773   367888988888777632  23444456777778888888877653   46


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIR  235 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR  235 (266)
                      ++++.++..++++.|.+ ++....       +.++|++.+.+++  ...+.++.++|+++||++.+.       +...+|
T Consensus       291 ~~~l~~~~~~~~~~l~~-~g~~~~-------~~~s~Ii~v~~g~--~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lR  360 (383)
T d1bs0a_         291 REKLAALITRFRAGVQD-LPFTLA-------DSCSAIQPLIVGD--NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLR  360 (383)
T ss_dssp             HHHHHHHHHHHHHHHTT-SSCEEC-------SCCSSBCCEEEES--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEC
T ss_pred             HHHHHHHHHHHHHHHHh-cCCccC-------CCCCCEEEEEECC--HHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEE
Confidence            67778888888888887 543111       2245688888877  556788999999999998642       346799


Q ss_pred             EeccCCCCHHHHHHHHHHHHHH
Q psy6547         236 LSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       236 ~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ++++..+|++|||++++.|..+
T Consensus       361 i~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         361 LTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             CBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.91  E-value=3.9e-24  Score=183.08  Aligned_cols=224  Identities=14%  Similarity=0.132  Sum_probs=169.2

Q ss_pred             CCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCc
Q psy6547          16 HMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGK   91 (266)
Q Consensus        16 ~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~   91 (266)
                      .+.+++.++|||.+++++++++.  ...+.|+++.++++.|.+.    ++++|.++|++||+.+++||+|+ | +|..|.
T Consensus       151 s~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~a----pl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~  226 (396)
T d2bwna1         151 NAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFG----PIKEICDIAEEFGALTYIDEVHAVGMYGPRGA  226 (396)
T ss_dssp             SCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSC
T ss_pred             cccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCccccc----ccHhHHHHhhhhcceeeeccceeeeeeccccc
Confidence            45688999999999999998753  2567899999999999998    99999999999999999999993 1 344454


Q ss_pred             ccccccCC----CCcCeeeecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhhc---cH
Q psy6547          92 LLAIHYED----VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE---NM  162 (266)
Q Consensus        92 ~~~~~~~~----~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~---~~  162 (266)
                      +.. ..++    ++.-+.+|||++|+.   .|++++++++.+.++....  ..+-+.+|..++++.++++.+..+   ..
T Consensus       227 G~~-~~~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~  302 (396)
T d2bwna1         227 GVA-ERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKL  302 (396)
T ss_dssp             CHH-HHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             cch-hhcCCceeeeeeeeccccccccc---ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHH
Confidence            432 2223    233344599999843   5679999999888874322  223345566777888888887653   35


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-------CCCEE
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-------SNNII  234 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~i  234 (266)
                      +.++..+.+++++.+.+ ++.....       .++|++.+.+++  ...+.+++++|+ ++||++.+.       +...+
T Consensus       303 r~~l~~~~~~~~~~l~~-~g~~~~~-------~~spIvpv~ig~--~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rl  372 (396)
T d2bwna1         303 RDAQQMHAKVLKMRLKA-LGMPIID-------HGSHIVPVVIGD--PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERL  372 (396)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTCCBCC-------CSSSCEEEECCC--HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEE
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCcCC-------CCCCEEEEEeCC--HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeE
Confidence            67777888899998887 5543222       256799999877  556788888866 689988642       45789


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      |++++..+|++|||++++.|++.
T Consensus       373 Ri~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         373 RFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEeCccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.90  E-value=3.7e-24  Score=184.88  Aligned_cols=249  Identities=19%  Similarity=0.217  Sum_probs=171.0

Q ss_pred             cCcccccCCCCCCceeecCCC----HHH----HHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPYND----VDA----LEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~d----~~~----l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +.....+...+.+++.++.++    ...    .+...++ .+...++++.+++|++|.+ ++.+.+++|+++|++||++|
T Consensus       129 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~-~s~~~l~~i~~~a~~~~~~l  207 (403)
T d1wsta1         129 LAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVT-MSVDRRKKLLELANEYDFLI  207 (403)
T ss_dssp             HHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEE
T ss_pred             hhhhHHHhhccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCcc-CCHHHHHHHHHHHHhcCcee
Confidence            333344566677788887642    222    2233323 3344555566677778876 99999999999999999999


Q ss_pred             EEeccccCcCCcCccc----ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547          78 IADEVQTGLGRTGKLL----AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA  153 (266)
Q Consensus        78 i~De~~~~~~~~g~~~----~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  153 (266)
                      |+||+|.++...+...    ..+..+....+.++||.+++| +|+||+++++++++.+...........+...+.+....
T Consensus       208 i~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  286 (403)
T d1wsta1         208 VEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKY  286 (403)
T ss_dssp             EEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             ccccchhheecCCCCCCcccccCCCCcEEEEccccceecCc-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhh
Confidence            9999998775444322    122334445566699999999 99999999999887766443444455566665555444


Q ss_pred             HHHHhh----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547         154 LDVILE----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI  229 (266)
Q Consensus       154 l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  229 (266)
                      +.....    ..+.+.+.++++.+.+.|.+ .....+....+..|.   ++|+.+++  +.+.+.+++.|+++||.+.|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~p~gg~---~~~~~~~~--~~~~~~~~~~l~~~gV~v~pg  360 (403)
T d1wsta1         287 VENGYLDEHIPKIIEFYKPRRDAMLEALEE-YMPEGVEWTKPEGGM---FVRVTLPE--GIDTKLMMERAVAKGVAYVPG  360 (403)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCTTCEECCCSBSS---EEEEECCT--TCCTTTTHHHHHHTTEECEEG
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHh-hccCCeEEeCCCcee---EEEEECCC--CCCHHHHHHHHHHCCEEEEec
Confidence            433222    23455555666666666666 222233332345678   99999987  677888999999999999875


Q ss_pred             --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         230 --------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                              ..+++|++++. .+++++++++++|.+++++..++
T Consensus       361 ~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         361 EAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             GGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence                    24799999543 58999999999999999987654

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.3e-24  Score=187.22  Aligned_cols=251  Identities=18%  Similarity=0.233  Sum_probs=176.0

Q ss_pred             cCcccccCCCCCCceeecCC----CHHHHHHHHhc------CCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           7 PTSYNEFGPHMPGYNIIPYN----DVDALEAKLKS------NPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~------~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      +.....+...+.+++.++.+    +++.++..+.+      ..+++.++ +.+.+|++|.+ ++.+.+++|.++|++|++
T Consensus       139 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~-~s~~~~~~i~~~a~~~~i  217 (420)
T d1vp4a_         139 LGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDL  217 (420)
T ss_dssp             HHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTC
T ss_pred             cchhHHHHHHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchh-hhhhhhhhhhhhhhcccc
Confidence            33333445667777777754    56666655422      12445555 55567778876 999999999999999999


Q ss_pred             EEEEeccccCcCCcCccc----ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          76 LFIADEVQTGLGRTGKLL----AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~~----~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      ++|+||+|.++...+...    .....+....+.++||.+++| +|+||+++++++++.+.........+.+.+.++++.
T Consensus       218 ~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a  296 (420)
T d1vp4a_         218 FIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAA  296 (420)
T ss_dssp             EEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             cccccchhhhccccCcccccccccccccceeEEeccccccccc-cccccccccchhhhhhhhhhhhccccCchhhhhhhh
Confidence            999999998775444321    112233334445588888899 999999999999888765545555566777777766


Q ss_pred             HHHHHHhh----ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         152 TALDVILE----ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       152 ~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      ..++....    .+..+.+++..+.+.+.|++.+.. +.+....+..|+   |+|+.+++  +.+..++++.|+++||.+
T Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~---f~~~~~~~--~~d~~~~~~~l~~~gV~v  371 (420)
T d1vp4a_         297 RYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGL---FIWLTLPE--GFDTWEMFEYAKRKKVFY  371 (420)
T ss_dssp             HHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSS---EEEEECCT--TCCTTTTHHHHHHHTEEC
T ss_pred             hhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceE---EEEEECCC--CCCHHHHHHHHHHCCeEE
Confidence            66643211    234566667777777777763332 244432345678   89999987  667888999999999999


Q ss_pred             ccC--------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         227 KPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       227 ~~~--------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                      .|+        ..+++|++.+ ..+++++++++++|++++++..++|
T Consensus       372 ~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~~  417 (420)
T d1vp4a_         372 VPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKEK  417 (420)
T ss_dssp             EEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHhh
Confidence            875        2469999954 3588999999999999999987765

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=7e-24  Score=182.77  Aligned_cols=242  Identities=13%  Similarity=0.085  Sum_probs=164.7

Q ss_pred             cCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547           7 PTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA   79 (266)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~   79 (266)
                      +.....+.-.+.+++.++.       .|++++++.+  .+++++++++.++|++|.+ ++.+.+++|+++|++||++||.
T Consensus       128 ~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~--~~~~~~v~l~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~ii~  204 (395)
T d1xi9a_         128 PPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI--TDRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVIS  204 (395)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEE
T ss_pred             ccchhhhhhcCCEEEEEeccccccccchHHHHHHhh--cccccEEEecCCCCCccch-hhHHHHHHHHhhhhhcCeeEEe
Confidence            3333445556677777763       2788888888  4567888877778889987 9999999999999999999999


Q ss_pred             eccccCcCCcCcccc---cccCCCCcCeeeeccccc-CCchhhhhheecH--HhhhccCC---CCCCCCCCCcHHHHHHH
Q psy6547          80 DEVQTGLGRTGKLLA---IHYEDVRPDIVILGKALS-GGLYPISAVLADD--EVMGTLVP---GTHGSTYGGNPLACKLA  150 (266)
Q Consensus        80 De~~~~~~~~g~~~~---~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~a~  150 (266)
                      ||+|.++...+....   .........+.++||.++ +| +|+||++...  ..++.+..   .........+.+++.++
T Consensus       205 De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~  283 (395)
T d1xi9a_         205 DEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAA  283 (395)
T ss_dssp             ECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHH
T ss_pred             ccccccccccccccchhhcCCCCCEEEEeCcchhcccch-hhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHH
Confidence            999977533333221   222222344556999999 78 9999976532  22111111   01223445566777777


Q ss_pred             HHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceec
Q psy6547         151 MTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTK  227 (266)
Q Consensus       151 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~  227 (266)
                      ..+++...+  ++.++.++++++.+.+.|++ ++.  +....+..|.   ++|+.++.....+..+++.+|+ ++||.+.
T Consensus       284 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~--~~~~~p~gg~---~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~  357 (395)
T d1xi9a_         284 IAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPG--ISTTKPQGAF---YIFPKIEVGPWKNDKEFVLDVLHNAHVLFV  357 (395)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STT--EECCCCCBSS---EECCEECSCSCSSHHHHHHHHHHHHCEECE
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-CCC--ceecCCCeeE---EEeEECCCCCCCCHHHHHHHHHHhCCEEEE
Confidence            766653211  23566677888888888887 542  1111234577   8998887532345677777765 6699998


Q ss_pred             cC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         228 PI------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       228 ~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      |+      +.+++|++  +..+++++++++++|++++++
T Consensus       358 PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         358 HGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             EGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             cChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence            75      36789999  457899999999999999875

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.89  E-value=1.6e-22  Score=175.41  Aligned_cols=241  Identities=18%  Similarity=0.162  Sum_probs=168.5

Q ss_pred             CcCcccccCCCCCCceeecC---------------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHH
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY---------------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC   70 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~---------------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~   70 (266)
                      +|+........+.+++.++.               .++++++...  ...++++++++.+|++|.+ ++.+.+++|+++|
T Consensus       124 y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~p~NPtG~~-~s~e~~~~l~~~a  200 (418)
T d2r5ea1         124 FDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF--NEKTKMIIINTPHNPLGKV-MDRAELEVVANLC  200 (418)
T ss_dssp             CTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHH
T ss_pred             cchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhh--hccccceecCCcCcccccc-ccHHHHHHHhhhh
Confidence            33333344445555666653               2467777666  5578999998889999987 9999999999999


Q ss_pred             HhcCCEEEEeccccCcCCcCccc-c-cccCC---CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcH
Q psy6547          71 SQYNVLFIADEVQTGLGRTGKLL-A-IHYED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNP  144 (266)
Q Consensus        71 ~~~g~~li~De~~~~~~~~g~~~-~-~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  144 (266)
                      ++||++||.||+|..+...+... . ....+   ....+.++||.++ +| +|+||+++++++++.+.......+++.+.
T Consensus       201 ~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~  279 (418)
T d2r5ea1         201 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCAT  279 (418)
T ss_dssp             HHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHHHTTTTCSCCH
T ss_pred             hcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC-cccccccccchhhhhhhhccccccccccc
Confidence            99999999999997764333211 1 11122   2233446999998 89 99999999999888776555556666777


Q ss_pred             HHHHHHHHHHHHHhh-----c----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--------
Q psy6547         145 LACKLAMTALDVILE-----E----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--------  207 (266)
Q Consensus       145 ~~~~a~~~~l~~~~~-----~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  207 (266)
                      +.+.++...+.....     +    .++++++.+++.+.+.|++ ++   +....+..|.   |+|++++..        
T Consensus       280 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~g---~~~~~P~gg~---f~~~~~~~~~~~~~~~~  352 (418)
T d2r5ea1         280 PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-VG---MNPTVPQGGY---FMVADWSSLDSKVDLTQ  352 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-TT---CEEEECSBSS---EEEEECGGGSTTCCGGG
T ss_pred             chhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh-cC---CcccCCCcee---EEEEEcccccccccchh
Confidence            777666555543211     1    3455566677777777776 43   3332445677   888887531        


Q ss_pred             --ccchHHHHHHHHHH-CCceeccC-----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         208 --AILEVYDVCIKMKD-AGLVTKPI-----------SNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       208 --~~~~~~~~~~~l~~-~gi~~~~~-----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                        ...+..+|+++|++ +||.+.|+           +.+++|++.  ..+++++++++++|++++.
T Consensus       353 ~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         353 ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             CCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHHHHHHHHHHc
Confidence              13467789998875 59999885           247899994  5689999999999999874

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.7e-22  Score=169.11  Aligned_cols=238  Identities=13%  Similarity=0.105  Sum_probs=155.5

Q ss_pred             cCCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547          13 FGPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT   84 (266)
Q Consensus        13 ~~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~   84 (266)
                      +...+..++.++.        .|++++++.+. .++++++++++++|++|.+ ++.+.+++|+++|+++|+++|+||+|.
T Consensus        99 ~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~-~~~~~~i~l~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~lI~De~y~  176 (361)
T d1d2fa_          99 IEGNQRTVMPVALEKQADGWFCDMGKLEAVLA-KPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHM  176 (361)
T ss_dssp             HHHTTCEEEEEECEECSSSEECCHHHHHHHHT-STTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHhhcceEEeecccccccccccccccchhhcc-cCCceeEEecccccccccc-cchhhhhhhhhhhhhhheeeeeccccc
Confidence            3344556665553        37999999984 3478899988888889976 999999999999999999999999998


Q ss_pred             CcCCcCccc-ccccC--CCCcCeeeeccccc-CCchhhhhheecH-HhhhccCC-C-CCCCCCCCcHHHHHHHHHHHHHH
Q psy6547          85 GLGRTGKLL-AIHYE--DVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVP-G-THGSTYGGNPLACKLAMTALDVI  157 (266)
Q Consensus        85 ~~~~~g~~~-~~~~~--~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~a~~~~l~~~  157 (266)
                      ++...+... .....  +....+.++||.++ +| +|+||+.... ...+.... . ......+++...+.++..+++..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  255 (361)
T d1d2fa_         177 DMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG  255 (361)
T ss_dssp             TCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccc-ccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhcc
Confidence            764333221 11111  12233344899998 78 9999987643 22222111 1 12222233444454444444432


Q ss_pred             hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC-----
Q psy6547         158 LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI-----  229 (266)
Q Consensus       158 ~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-----  229 (266)
                      ..  +.....++++.+.+.+.+.+....  +....+..|.   ++|+.+... +.+..+|+.+|+++ ||.+.|+     
T Consensus       256 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~p~gg~---~~~~~l~~~-~~~~~~~~~~Ll~~~gv~v~pG~~F~~  329 (361)
T d1d2fa_         256 APWLDALRIYLKDNLTYIADKMNAAFPE--LNWQIPQSTY---LAWLDLRPL-NIDDNALQKALIEQEKVAIMPGYTYGE  329 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCCCCCSBCS---EEEEECGGG-CCCHHHHHHHHHHTTCEECEEGGGGCG
T ss_pred             chhhhcccccchhhHHHHHHHhhhhccc--ccccccCcee---EEEEEccCC-CCCHHHHHHHHHHhCCEEEEeccccCC
Confidence            11  235555666666666666552222  2221334577   888887531 45788999998755 9999864     


Q ss_pred             -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 -SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                       +.+++|+|+  ..+++++++++++|.++++++
T Consensus       330 ~~~~~vRis~--~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         330 EGRGFVRLNA--GCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             GGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence             457899994  578999999999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.89  E-value=5.3e-23  Score=174.73  Aligned_cols=223  Identities=13%  Similarity=0.107  Sum_probs=157.6

Q ss_pred             CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      .+.+++.++..      ..+++++.+  .++++++++++++|++|.+ ++.+.+++|.++|++|++++|+||+|.+|...
T Consensus       116 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~v~l~nP~NPtG~~-~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~  192 (355)
T d1lc5a_         116 SGCEIRRWSLREADGWQLTDAILEAL--TPDLDCLFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPH  192 (355)
T ss_dssp             TTCEEEEEECCGGGTTCCCTTHHHHC--CTTCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT
T ss_pred             ccccceeeeeeccCCccceeeeeecc--ccccceeeeecccCccccc-chhhhhhhhhhhccccccccccccceeeeeee
Confidence            34455555532      124455555  4578888888789999987 89999999999999999999999999877544


Q ss_pred             Ccccc--cccCCCCcCeeeeccccc-CCchhhhhheecHHhh-hccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547          90 GKLLA--IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVM-GTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIE  164 (266)
Q Consensus        90 g~~~~--~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~  164 (266)
                      +....  ....+....+.++||+++ +| +|+||++++.+.. +.++  ....+++.+.+++.++..+++.... ...++
T Consensus       193 ~~~~~~~~~~~~~~i~~~S~SK~~~l~G-lR~G~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  269 (355)
T d1lc5a_         193 ETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMR--RQQMPWSVNALAALAGEVALQDSAWQQATWH  269 (355)
T ss_dssp             CCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHH--HHSCTTCSCHHHHHHHHHGGGCHHHHHHHHH
T ss_pred             cccccccccccccceeeccccccccccc-ccccceeccchhhhHHHH--hhcCCccccccccccccccccccchhHHHHH
Confidence            43221  112223345556999999 99 9999999876543 4443  2345567788888888877753221 23456


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEec
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSP  238 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~  238 (266)
                      ++++..+++.+.|.+ +..  +.. .++.|+   |+|+.++.    +..+++++|+++||+++++      .++++|+++
T Consensus       270 ~~~~~~~~~~~~l~~-~~~--~~~-~p~~~~---f~~~~~~~----~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~  338 (355)
T d1lc5a_         270 WLREEGARFYQALCQ-LPL--LTV-YPGRAN---YLLLRCER----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI  338 (355)
T ss_dssp             HHHHHHHHHHHHHHT-STT--EEE-CCCSSS---EEEEEESC----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC
T ss_pred             HHHHHHHHHHHHHhh-cCC--cEE-CCCCCE---EEEEECCC----CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe
Confidence            667777777777777 432  222 234566   89988876    5567999999999999864      358999994


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTI  258 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~  258 (266)
                         .+++++++++++|++++
T Consensus       339 ---~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         339 ---RSAAQNERLLAALRNVL  355 (355)
T ss_dssp             ---CCHHHHHHHHHHHHHHC
T ss_pred             ---CCHHHHHHHHHHHHHhC
Confidence               38999999999998763

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.88  E-value=1.7e-22  Score=174.02  Aligned_cols=224  Identities=13%  Similarity=0.133  Sum_probs=148.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc---ccc---CCC
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA---IHY---EDV  100 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~---~~~---~~~  100 (266)
                      |.+.++.++. .++++++++++++|++|.+ ++.+.+++|+++|++++++||+||+|.++...+....   ...   ...
T Consensus       152 d~~~~~~~~~-~~~~~~i~l~~P~NPTG~v-~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
T d1c7na_         152 DFQKLEKLSK-DKNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADK  229 (394)
T ss_dssp             CHHHHHHHHT-CTTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTT
T ss_pred             hhhhhhhhhc-cccceEEEeccccccccee-ccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccc
Confidence            6777777773 4578999998899999987 9999999999999999999999999988643332211   111   122


Q ss_pred             CcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCCCC-CcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHH
Q psy6547         101 RPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYG-GNPLACKLAMTALDVILE--ENMIENAYKMGEIFRS  175 (266)
Q Consensus       101 ~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~  175 (266)
                      ...+.++||.++ +| +|+||++++. .+.+.+.......... .....++++.........  +++.+.++++.+.+.+
T Consensus       230 ~i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T d1c7na_         230 TITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKD  308 (394)
T ss_dssp             EEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccccccccccc-cccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhh
Confidence            334455999999 88 9999988765 4444443222222222 222233333333222111  2345555566666666


Q ss_pred             HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC------CCCEEEEeccCCCCHHHHH
Q psy6547         176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELR  248 (266)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~iR~~~~~~~t~~~i~  248 (266)
                      .++. .. ..+....+..|.   ++|+.++.. +.+..+++++|+++ ||.+.|+      +.+++|++  +..++++++
T Consensus       309 ~l~~-~~-~~~~~~~p~g~~---~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~  380 (394)
T d1c7na_         309 FFEV-NH-PEIKAPLIEGTY---LQWIDFRAL-KMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQ  380 (394)
T ss_dssp             HHHH-HC-TTSBCCCCSBSS---EEEEECGGG-CCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHH
T ss_pred             hhhc-cc-cceeecCCCcee---EEEEECCCC-CCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHH
Confidence            6654 22 223321234466   788887642 35788999998765 9999874      36799999  456899999


Q ss_pred             HHHHHHHHHHHHH
Q psy6547         249 EGLDIIINTINTM  261 (266)
Q Consensus       249 ~~~~~l~~~~~~~  261 (266)
                      ++++||.++++++
T Consensus       381 eal~rl~~~l~~L  393 (394)
T d1c7na_         381 ESLERLNKALKDL  393 (394)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999875

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.4e-22  Score=172.08  Aligned_cols=218  Identities=19%  Similarity=0.156  Sum_probs=157.6

Q ss_pred             HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc-cc-ccCC---CCc
Q psy6547          28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYED---VRP  102 (266)
Q Consensus        28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~-~~-~~~~---~~~  102 (266)
                      .+++....  .+.++++++..++|++|.+ ++.+.+++|.++|++|++++|+||+|.++...+..+ +. ...+   ...
T Consensus       161 ~~~~~~~~--~~~~~~i~~~~p~NPtG~~-~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i  237 (418)
T d1w7la_         161 PMELAGKF--TSRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTL  237 (418)
T ss_dssp             HHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEE
T ss_pred             hhhhhccc--cccccceeccCcCCccccc-ccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccc
Confidence            44444433  6678888888888888887 999999999999999999999999998875444321 11 1112   233


Q ss_pred             Ceeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHH
Q psy6547         103 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---------ENMIENAYKMGEI  172 (266)
Q Consensus       103 d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---------~~~~~~~~~~~~~  172 (266)
                      .+.++||.++ +| +|+||+++++++++.+.......+++.+.+.+.++..++.....         ..+.+.++++++.
T Consensus       238 ~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~  316 (418)
T d1w7la_         238 TIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH  316 (418)
T ss_dssp             EEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHH
T ss_pred             eecccCccccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhh
Confidence            4455999988 88 99999999999888777655666777788888888777765321         1245566667777


Q ss_pred             HHHHhhcccccCCCcccEEecCccceeeEEEEeeC-----------ccchHHHHHHHHH-HCCceeccC-----------
Q psy6547         173 FRSELSSPANKSKASFKLSSGGLKKSINTLILSVS-----------AILEVYDVCIKMK-DAGLVTKPI-----------  229 (266)
Q Consensus       173 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~l~-~~gi~~~~~-----------  229 (266)
                      +.+.|.+ ++   +....+..|.   |+|+++++.           +..+..+++++|+ ++||.+.|+           
T Consensus       317 l~~~L~~-~g---~~~~~P~gg~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~  389 (418)
T d1w7la_         317 MIRSLQS-VG---LKPLIPQGSY---FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKH  389 (418)
T ss_dssp             HHHHHHT-TT---CEEEECSBSS---EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTT
T ss_pred             hhhhhhh-cC---CcccCCCcee---EEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCC
Confidence            7777776 43   3332344677   889887631           1234677888876 669999875           


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ..+++|+|  +..+++++++++++|++..
T Consensus       390 ~~~~iRis--~~~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         390 FDHYIRFC--FVKDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             SCSEEEEE--CCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEE--EcCCHHHHHHHHHHHHHHh
Confidence            24799999  5679999999999998875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.87  E-value=1.9e-22  Score=174.61  Aligned_cols=244  Identities=14%  Similarity=0.081  Sum_probs=161.0

Q ss_pred             CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI   78 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li   78 (266)
                      ++.....+...+.+++.++.       .+++++++.+  .+.+++++++.++|++|.+ ++.+.+++|.++|++|+++||
T Consensus       135 y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~--~~~~~~~~l~np~NPtG~~-~~~~~~~~i~~~~~~~~~~vi  211 (412)
T d1bw0a_         135 FPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK--DDKTKLLIVTNPSNPCGSN-FSRKHVEDIVRLAEELRLPLF  211 (412)
T ss_dssp             CTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred             chhhhhhhhccCccccccccccccccchhhHHHHhhh--hcccccccccccccccccc-chhhhccccccccccCCeeee
Confidence            44444445566777777763       3688888877  5578899988888999987 899999999999999999999


Q ss_pred             EeccccCcCCcCccc-ccc----cCCCCcC---eeeeccccc-CCchhhhhheecHHhhhc------cCCCCCCCCCCCc
Q psy6547          79 ADEVQTGLGRTGKLL-AIH----YEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGT------LVPGTHGSTYGGN  143 (266)
Q Consensus        79 ~De~~~~~~~~g~~~-~~~----~~~~~~d---~~~~sK~~~-~g~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~  143 (266)
                      +||+|.++...|... ...    .......   +.++||.++ +| +|+||++++.+....      ... ....+.+.+
T Consensus       212 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  289 (412)
T d1bw0a_         212 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPC  289 (412)
T ss_dssp             EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSC
T ss_pred             chhhHHHhccCCCCCccccccccccccccccccccccCccCccCC-CCcccccccchhhcchhhhhhhcc-ccccccCCc
Confidence            999998875544321 111    1111122   224899998 88 999999886543221      110 111122233


Q ss_pred             HHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHH
Q psy6547         144 PLACKLAMTALDV-ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCI  217 (266)
Q Consensus       144 ~~~~~a~~~~l~~-~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~  217 (266)
                      ...++.+...+.. ..+  .+..++++++++.+.+.|.+..   .+....+..|.   ++|..++...   ..+..+|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~---g~~~~~p~gg~---~l~~~~~~~~~~~~~~~~~~~~  363 (412)
T d1bw0a_         290 TVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECI---GLAPTMPRGAM---YLMSRIDLEKYRDIKTDVEFFE  363 (412)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTST---TEEECCCCBTT---EEEEEECGGGBSSCCSHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhc---CceecCCCCce---EEEEeCChhhcCCCCCHHHHHH
Confidence            4444333332221 111  2356666777777777776622   22221334577   8888876321   235778998


Q ss_pred             HHHH-CCceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         218 KMKD-AGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       218 ~l~~-~gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                      +|++ +||.+.|+    .++++|++  +..++++++++++||+++++++.
T Consensus       364 ~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l~~~~  411 (412)
T d1bw0a_         364 KLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYREAVERIKAFCQRHA  411 (412)
T ss_dssp             HHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             HHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHhcC
Confidence            8875 59999985    46899999  56789999999999999998764

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.3e-22  Score=171.93  Aligned_cols=215  Identities=19%  Similarity=0.198  Sum_probs=153.0

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc----cccCCCCc
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA----IHYEDVRP  102 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~----~~~~~~~~  102 (266)
                      +.+.++...  .+++++++++.++|++|.+ ++.+.+++|.++|++|+++||+||+|..+...+....    .+..+...
T Consensus       150 ~~~~~~~~~--~~~~~~~~l~nP~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i  226 (375)
T d1o4sa_         150 SLEEVEGLL--VGKTKAVLINSPNNPTGVV-YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIV  226 (375)
T ss_dssp             CHHHHHHTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEE
T ss_pred             hhHHHHHhh--ccCccEEEEeCCCCCccCC-CCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEE
Confidence            566666655  4578888877779999987 8999999999999999999999999976533332211    22334455


Q ss_pred             Ceeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Q psy6547         103 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA  181 (266)
Q Consensus       103 d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~  181 (266)
                      .+.++||.++ +| +|+||++++++..+.+.......+.......+..+...++.. .....+.++++.+.+.+.|++ .
T Consensus       227 ~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~-~  303 (375)
T d1o4sa_         227 YINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKK-M  303 (375)
T ss_dssp             EEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             EEeechhhccCCc-cccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHh-c
Confidence            5666999999 89 999999999988877654433334444444444333222111 123667777888888888887 5


Q ss_pred             ccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         182 NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                      +....   .+..|.   |+|+.++.    +..+++.+|+ ++||.+.|+    .++++|++.  ..+++++++++++|++
T Consensus       304 g~~~~---~p~gg~---f~~~~~~~----~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~--~~~~e~l~~al~rl~~  371 (375)
T d1o4sa_         304 GVKFV---EPEGAF---YLFFKVRG----DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSF--ATSIERLTEALDRIED  371 (375)
T ss_dssp             TCCCC---CCSBSS---EEEEECSS----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHH
T ss_pred             CceEe---cCCccE---EEEEECCC----CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEE--cCCHHHHHHHHHHHHH
Confidence            43222   334577   88998876    4556666655 679999985    468999994  5689999999999999


Q ss_pred             HHH
Q psy6547         257 TIN  259 (266)
Q Consensus       257 ~~~  259 (266)
                      +++
T Consensus       372 ~l~  374 (375)
T d1o4sa_         372 FLN  374 (375)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=2.1e-22  Score=171.80  Aligned_cols=226  Identities=17%  Similarity=0.201  Sum_probs=160.4

Q ss_pred             CCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          14 GPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        14 ~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      ...+.+++.++.        .|++++++.+  .+.++++++..++|++|.+ ++.+.+++|+++|++||+++|+||+|..
T Consensus       120 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~~~~p~NPtG~~-~~~~~l~~l~~~a~~~~i~ii~D~~~~~  196 (368)
T d1v2da_         120 FLAGAKARLVRLDLTPEGFRLDLSALEKAL--TPRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDE  196 (368)
T ss_dssp             HHTTCEEEEEECEEETTEEECCHHHHHTTC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HhcCCccceeccccccccccCCHHHHHHhh--ccCceEEEEcCCCCccccc-CCHHHHHHHHHHHHHcCCeeeechhhhh
Confidence            334555555543        3789999988  4567888877778889987 9999999999999999999999999965


Q ss_pred             cCCcCcccc--cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc--
Q psy6547          86 LGRTGKLLA--IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE--  160 (266)
Q Consensus        86 ~~~~g~~~~--~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--  160 (266)
                      +........  .........+.++||.++ +| +|+||+++++++.+.+.........+++.+.+.++..++......  
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  275 (368)
T d1v2da_         197 LYYGERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGF  275 (368)
T ss_dssp             CBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTH
T ss_pred             hcccccccccccccccccceeecccccccccc-cccccccccccccchhhhhhhccccccccccccccccccccccchhh
Confidence            422222111  112223344566888887 77 999999999988877776556666777888887777777655443  


Q ss_pred             --cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------C
Q psy6547         161 --NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------S  230 (266)
Q Consensus       161 --~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~  230 (266)
                        ...+.++++.+++.+.|++ .+   +....+..|.   ++|+.++.   .+..   +.|.++||.+.|+        +
T Consensus       276 ~~~~~~~~~~~~~~l~~~l~~-~g---~~~~~p~g~~---~~~~~l~~---~~~~---~ll~~~gI~v~pg~~F~~~~~~  342 (368)
T d1v2da_         276 YEALREGYRRRRDLLAGGLRA-MG---LRVYVPEGTY---FLMAELPG---WDAF---RLVEEARVALIPASAFYLEDPP  342 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT---CCEECCSBSS---EEEEECTT---CCHH---HHHHHTCEECEEGGGGCSSSCC
T ss_pred             HHHHHHHHHHhhhhhhhhHHh-cC---cEEecCCcee---EEEEeCCc---cHHH---HHHHhCCEEEEechhhCCCCCC
Confidence              3445566777777777776 43   3321223466   88888765   3433   3467899999874        3


Q ss_pred             CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         231 NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .+++|++  +..+++++++++++|++++
T Consensus       343 ~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         343 KDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             TTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            5899999  4578999999999999863

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.87  E-value=1.6e-21  Score=169.77  Aligned_cols=234  Identities=15%  Similarity=0.100  Sum_probs=153.8

Q ss_pred             CCCceeecC-------CCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          17 MPGYNIIPY-------NDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        17 ~~~v~~~~~-------~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.+++.++.       .|++++++.+.+    ..++++++++.++|++|.+ ++++.+++|.++|++||++||+||+|..
T Consensus       155 g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~-~s~~~l~~i~~~a~~~~~~vI~De~Y~~  233 (431)
T d1m7ya_         155 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT-MTRNELYLLLSFVEDKGIHLISDEIYSG  233 (431)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             CceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccc-ccccccccccccccccCcceeecccccc
Confidence            455565553       267788777643    3478888888888889987 9999999999999999999999999977


Q ss_pred             cCCcCccc-cc----cc---------CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHH
Q psy6547          86 LGRTGKLL-AI----HY---------EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLA  150 (266)
Q Consensus        86 ~~~~g~~~-~~----~~---------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  150 (266)
                      +...+..+ +.    ..         .+....+.++||.++ +| +|+||++++++++...... .......+...+.++
T Consensus       234 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  311 (431)
T d1m7ya_         234 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQHLL  311 (431)
T ss_dssp             GCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH-HGGGSCCCHHHHHHH
T ss_pred             cccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCC-CccceeccchhhhHHHHHH-Hhccccccccccchh
Confidence            64433321 11    00         011223445999999 88 9999999988765433321 122223334444444


Q ss_pred             HHHHHHH---hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHHH-
Q psy6547         151 MTALDVI---LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKMK-  220 (266)
Q Consensus       151 ~~~l~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~-  220 (266)
                      .+.+...   ..  .+.+.+++++.+.+.+.|++ .   ++.......|.   |+|+.++..-    ..+..+++++|+ 
T Consensus       312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~---gi~~~~p~gg~---f~w~~l~~~~~~~~~~~~~~l~~~ll~  384 (431)
T d1m7ya_         312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-S---GISCLNGNAGL---FCWVDMRHLLRSNTFEAEMELWKKIVY  384 (431)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---TCEECCCCSSS---EEEEECGGGSSSSSHHHHHHHHHHHHH
T ss_pred             hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-C---CcEEecCCcee---EEEEECccccccCcccCHHHHHHHHHH
Confidence            3333221   11  23445556666666666665 3   33332334578   8999986521    234567888887 


Q ss_pred             HCCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         221 DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       221 ~~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ++||.+.|+      .++++|++.. ..++++++++++||++++++.
T Consensus       385 ~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         385 EVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             TSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence            569999874      3689999943 357889999999999999874

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.3e-22  Score=172.76  Aligned_cols=212  Identities=14%  Similarity=0.145  Sum_probs=148.7

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc--CCCCcCeeeeccccc-CC
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY--EDVRPDIVILGKALS-GG  114 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~--~~~~~d~~~~sK~~~-~g  114 (266)
                      .+++++++++.++|++|.+ ++.+.+++|.++|++||++||.||+|..+...+.......  ......+.++||.++ +|
T Consensus       157 ~~~~~~~~l~nP~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G  235 (389)
T d2gb3a1         157 NERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG  235 (389)
T ss_dssp             CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred             ccCccEEEeCCCCcccccc-chHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcc
Confidence            4578888888888889987 8999999999999999999999999987754443322211  122233444889888 78


Q ss_pred             chhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEe
Q psy6547         115 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSS  192 (266)
Q Consensus       115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  192 (266)
                       +|+||++++.+.+...........++.+++.+.++...+...+.  +...++++++++.+.+.|++ ++.....  .+.
T Consensus       236 -lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~--~p~  311 (389)
T d2gb3a1         236 -ARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-HGLKRFT--KPS  311 (389)
T ss_dssp             -GCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBC--CCS
T ss_pred             -cceeeeeccchhHHHHHhhhhhccccccccccccccccccccchhcccccccccccchhhhhhhhh-hcccccc--CCC
Confidence             99999998665433322222334445566666666555532211  34667778888888888887 5432221  345


Q ss_pred             cCccceeeEEEEeeCccchHHHHHHHHHHC------CceeccC---------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         193 GGLKKSINTLILSVSAILEVYDVCIKMKDA------GLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       193 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gi~~~~~---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      .|+   ++|+.++.   .++.+++++|+++      ||.+.|+         +.+++|++  +..+++++++++++|.++
T Consensus       312 ~g~---~~~~~lp~---~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~  383 (389)
T d2gb3a1         312 GAF---YITAELPV---EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEG  383 (389)
T ss_dssp             BSS---EEEEECSS---SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             ceE---EEEEeCCC---CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHH
Confidence            677   89999876   3678899998764      5566553         25799999  457999999999999999


Q ss_pred             HHHHh
Q psy6547         258 INTMA  262 (266)
Q Consensus       258 ~~~~~  262 (266)
                      +++.+
T Consensus       384 lk~f~  388 (389)
T d2gb3a1         384 LKMFC  388 (389)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98865

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.86  E-value=2.3e-21  Score=168.50  Aligned_cols=232  Identities=15%  Similarity=0.103  Sum_probs=151.5

Q ss_pred             CCCceeecCC-------CHHHHHHHHh----cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          17 MPGYNIIPYN-------DVDALEAKLK----SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        17 ~~~v~~~~~~-------d~~~l~~~l~----~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      +.+++.++..       |+++++..++    ..++++++++++++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus       154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~-~s~~~~~~i~~~a~~~~~~vI~De~Y~~  232 (428)
T d1iaya_         154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAA  232 (428)
T ss_dssp             CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGG
T ss_pred             CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCccccc-ccccccchhheeeccCcEEEEecccccc
Confidence            5566777632       5677665542    35578888888888889877 9999999999999999999999999987


Q ss_pred             cCCcCcccc-c----c-------cCCCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547          86 LGRTGKLLA-I----H-------YEDVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAM  151 (266)
Q Consensus        86 ~~~~g~~~~-~----~-------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (266)
                      +...+..+. .    .       .......+.++||.++ +| +|+||+++. +.+.+.+......  ...+...+.++.
T Consensus       233 ~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~  309 (428)
T d1iaya_         233 TVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLA  309 (428)
T ss_dssp             GCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred             cccCcccccccccccchhhccccccceEEEEecCCCcccCCC-cccccccccccchhhhhhhhhcc--cccccccccchh
Confidence            644333211 0    0       0111233555999998 78 999999884 4555554422122  222333433333


Q ss_pred             HHHH---HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHHHH-
Q psy6547         152 TALD---VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKMKD-  221 (266)
Q Consensus       152 ~~l~---~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~-  221 (266)
                      +.+.   .++.  ++..+.++++++.+.+.|+. .+   +....+..|.   |+|+.++...    ..+..+++++|++ 
T Consensus       310 a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~-~g---i~~~~p~gg~---f~w~~l~~~~~~~~~~~~~~l~~~Ll~~  382 (428)
T d1iaya_         310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VG---IKCLKNNAGL---FCWMDLRPLLRESTFDSEMSLWRVIIND  382 (428)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT---CCBCCCSSSS---EEEEECGGGCSSSSHHHHHHHHHHHHHT
T ss_pred             hhhhhhccccccccccccccchhHHHHHHHHHh-CC---CEEecCCcce---EEEEECccccccCCCCCHHHHHHHHHHh
Confidence            3221   1111  23455566667777777765 43   3331344578   8999986421    1245678888875 


Q ss_pred             CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         222 AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       222 ~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +||.+.|+      +++++|++.. ..++++++++++||++++..
T Consensus       383 ~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         383 VKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence            59999874      4689999953 35788999999999999865

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8.7e-22  Score=168.78  Aligned_cols=217  Identities=14%  Similarity=0.169  Sum_probs=159.7

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc-ccc----cCCCC
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIH----YEDVR  101 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~-~~~----~~~~~  101 (266)
                      |++++++.+  .++++++++++++|++|.+ ++.+.+++|.++|.++++.++.||.|..+...+... ...    ..+..
T Consensus       148 d~~~l~~~~--~~~~~~i~l~~P~NPtG~v-~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (382)
T d1u08a_         148 DWQEFAALL--SERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA  224 (382)
T ss_dssp             CHHHHHHHC--CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred             CHHHHhhhh--ccCccEEEECCCCcccccc-cccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcE
Confidence            788888887  5578899988888889987 899999999999999999999999996543222111 110    11223


Q ss_pred             cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhh
Q psy6547         102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~  178 (266)
                      ..+.++||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+++....  ..+++.++++++.+.+.+.
T Consensus       225 i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (382)
T d1u08a_         225 VAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALN  303 (382)
T ss_dssp             EEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTT
T ss_pred             EEEeeccccccCCc-ccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhc
Confidence            44556999998 88 99999999999888776555566677888888888888764322  2456666666666666655


Q ss_pred             cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--------CCCEEEEeccCCCCHHHHHH
Q psy6547         179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI--------SNNIIRLSPALNITEQELRE  249 (266)
Q Consensus       179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~--------~~~~iR~~~~~~~t~~~i~~  249 (266)
                      . .   .+....+..|.   ++|+.++.....+..+|+++|+ ++||.+.|+        +.+++|++  +..+++++++
T Consensus       304 ~-~---g~~~~~p~gg~---~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~  374 (382)
T d1u08a_         304 E-S---RLEILPCEGTY---FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLA  374 (382)
T ss_dssp             S-S---SCEECCCCBSS---EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHH
T ss_pred             c-C---CcEEecCCceE---EEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHH
Confidence            4 2   33332345678   8999887533457888999875 679999875        34689999  4568999999


Q ss_pred             HHHHHHH
Q psy6547         250 GLDIIIN  256 (266)
Q Consensus       250 ~~~~l~~  256 (266)
                      +++||++
T Consensus       375 al~RL~~  381 (382)
T d1u08a_         375 AAERLRQ  381 (382)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9999875

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.7e-21  Score=162.85  Aligned_cols=221  Identities=11%  Similarity=0.022  Sum_probs=153.1

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      ..+...+.+++.++.++-....+..  .+++++++++.++|++|.+ ++++.+++    +.++++++|+||+|.++....
T Consensus       111 ~~~~~~g~~~v~v~~~~~~~~~~~~--~~~~~~l~l~nP~NPtG~~-~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~  183 (334)
T d2f8ja1         111 IFAKAVGAKFLEVPLTKDLRIPEVN--VGEGDVVFIPNPNNPTGHV-FEREEIER----ILKTGAFVALDEAYYEFHGES  183 (334)
T ss_dssp             HHHHHHTCCEEECCCCTTSCCCCCC--CCTTEEEEEESSCTTTCCC-CCHHHHHH----HHTTTCEEEEECTTGGGTCCC
T ss_pred             cchhccCCccccccccccccccccc--cccceEEEeccccccccee-ecHHHhhc----cccceeEEeecccchhhcccc
Confidence            3345567788888865211111111  2356778777778889987 56655544    357899999999997654333


Q ss_pred             cccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYK  168 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~  168 (266)
                      ........+....+.++||.++ +| +|+||+++++++++.+....  .++..+..++.++.+.++..+. +...+.+++
T Consensus       184 ~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~  260 (334)
T d2f8ja1         184 YVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVE  260 (334)
T ss_dssp             CGGGGGTCSSEEEEEESTTTSSCTT-TCEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccccccCceEEEEecCccccchhh-hhhhhcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhhHHHHHHH
Confidence            3322333333444566999999 89 99999999999998876432  3455677787777776654322 345677777


Q ss_pred             HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHH
Q psy6547         169 MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR  248 (266)
Q Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~  248 (266)
                      +++.+.+.|++ ++   +.. .++.|.   |+|+.++.   .+++++++.|+++||.+++. .+++|++.   .+.++++
T Consensus       261 ~r~~l~~~L~~-~g---~~~-~~~~g~---f~~~~~~~---~~~~~~~~~L~~~GI~vr~~-~~~vRis~---g~~ee~~  325 (334)
T d2f8ja1         261 ERERMKSALRE-MG---YRI-TDSRGN---FVFVFMEK---EEKERLLEHLRTKNVAVRSF-REGVRITI---GKREEND  325 (334)
T ss_dssp             HHHHHHHHHHH-HT---CEE-CCCCSS---EEEEECCH---HHHHHHHHHHHHTTEECEEE-TTEEEEEC---CCHHHHH
T ss_pred             HHHHHHHHHHH-CC---CeE-CCCCce---EEEEECCC---CCHHHHHHHHHHCCCEECCC-CCeEEEEc---CCHHHHH
Confidence            88888888887 54   222 334677   88887766   37889999999999999876 78999993   4788889


Q ss_pred             HHHHHHHH
Q psy6547         249 EGLDIIIN  256 (266)
Q Consensus       249 ~~~~~l~~  256 (266)
                      +++++|++
T Consensus       326 ~l~~~l~~  333 (334)
T d2f8ja1         326 MILRELEV  333 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.8e-20  Score=156.22  Aligned_cols=217  Identities=16%  Similarity=0.129  Sum_probs=146.3

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+++.++..     |+++++..+   .+++++++++++|++|.+ ++.+.++.+...++ ++.++|+||+|.+|.....
T Consensus       119 g~~v~~~~~~~~~~~d~~~l~~~~---~~~~~v~~~~pnNPtG~~-~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~  193 (354)
T d1fg7a_         119 GVECRTVPTLDNWQLDLQGISDKL---DGVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS  193 (354)
T ss_dssp             TCEEEECCCCTTSCCCHHHHHTSC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC
T ss_pred             Cceeeccccccccccchhhhhhcc---cccceeeccCCCccceeE-eeeccccccccccc-ccccccccccchhhccccc
Confidence            4555555532     577777655   368999999999989887 78889998888775 5777888888877743322


Q ss_pred             cc-ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHH
Q psy6547          92 LL-AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENA  166 (266)
Q Consensus        92 ~~-~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~  166 (266)
                      .. ..........+-+|||.++ +| +|+||+++++++++.+..  ....+..+...+.++..++..-..   ....+++
T Consensus       194 ~~~~~~~~~~~iv~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (354)
T d1fg7a_         194 LAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQI  270 (354)
T ss_dssp             SGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             cchhhcccccceEEeCCccccCCCc-cccccccccchhhhhhhh--hcCccchhhHHHHHHHHHHhhhccccccccchhh
Confidence            21 1111222223346999999 89 999999999999887764  334455566666555544432211   2234555


Q ss_pred             HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEEEEeccCC
Q psy6547         167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALN  241 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~~~~  241 (266)
                      .+.++.+.+.+.+ ++.  +....++.++   |+|+.+++     +.+++++|+++||+++++     ..+++|++.   
T Consensus       271 ~~~r~~l~~~l~~-~~~--~~~~~p~~~~---f~~~~~~~-----~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---  336 (354)
T d1fg7a_         271 IAEREYLIAALKE-IPC--VEQVFDSETN---YILARFKA-----SSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---  336 (354)
T ss_dssp             HHHHHHHHHHHHH-STT--EEEECCCSSS---EEEEEETT-----HHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---
T ss_pred             hhHHHHHHHHHHh-CCC--cceeCCCCce---EEEEeCCC-----HHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---
Confidence            6666777777666 332  1110234567   89988754     678999999999999864     358999993   


Q ss_pred             CCHHHHHHHHHHHH
Q psy6547         242 ITEQELREGLDIII  255 (266)
Q Consensus       242 ~t~~~i~~~~~~l~  255 (266)
                      .+++++++++++|+
T Consensus       337 gt~ee~~~~l~aLk  350 (354)
T d1fg7a_         337 GTREESQRVIDALR  350 (354)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            48889998888876

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.80  E-value=1.9e-18  Score=147.58  Aligned_cols=224  Identities=14%  Similarity=0.161  Sum_probs=156.5

Q ss_pred             CCCceeecCCC-------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc----CCEEEEeccccC
Q psy6547          17 MPGYNIIPYND-------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY----NVLFIADEVQTG   85 (266)
Q Consensus        17 ~~~v~~~~~~d-------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~----g~~li~De~~~~   85 (266)
                      +..++.++.++       .+.+++.+  +++++++++.+++|++|.+.    ++++|.++|+++    |+++++|.+|+ 
T Consensus       117 g~~~~~v~~~~~~~~~~~~~~l~~~i--~~~t~~v~i~~~~n~tG~~~----~~~~I~~l~~~~~~~~~~~~~vD~~~~-  189 (381)
T d1elua_         117 GITYRFFPVAATLNQGDAAAVLANHL--GPKTRLVILSHLLWNTGQVL----PLAEIMAVCRRHQGNYPVRVLVDGAQS-  189 (381)
T ss_dssp             CCEEEEECCGGGSSSSCHHHHHHTTC--CTTEEEEEEESBCTTTCCBC----CHHHHHHHHHHCCSSSCCEEEEECTTT-
T ss_pred             cccccccccccccccchHHHHHHhhh--cccccccccccccccccccc----hhhHHHHHHhhcccccccccccccccc-
Confidence            45666676531       34455444  56899999999999999987    888999999884    69999999994 


Q ss_pred             cCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC----------------------CCCCCc
Q psy6547          86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG----------------------STYGGN  143 (266)
Q Consensus        86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~----------------------~~~~~~  143 (266)
                      ++.  .++.....+.+.-+.++.|+++++ .++|++..+++..+.+.+....                      ...+.+
T Consensus       190 ~g~--~~~~~~~~~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  266 (381)
T d1elua_         190 AGS--LPLDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSA  266 (381)
T ss_dssp             BTT--BCCCTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCC
T ss_pred             ccc--cccccccccccccccccccccccc-chhhHHHhhHHHHHhcCccccccccccccccccccccccccccccccccc
Confidence            321  223333344333344466999977 6788888888877766532110                      112445


Q ss_pred             HHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHH
Q psy6547         144 PLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIK  218 (266)
Q Consensus       144 ~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  218 (266)
                      .....+..++++.+...    ...++..++.+++.+.|++ ++. ..+.. ....+.   +++|.+..  ..+.+++.+.
T Consensus       267 ~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~~~~~~---~vsf~~~~--~~~~~~i~~~  339 (381)
T d1elua_         267 YPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLAT-SAPQAG---LVSFTVDS--PLGHRAIVQK  339 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCS-SCCSSS---EEEEEECS--SSCHHHHHHH
T ss_pred             chhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc-CCCeEecCC-CCcccc---EEEEEcCC--CCCHHHHHHH
Confidence            55666666777766542    3457777888899999988 543 22322 222344   78888765  4567889999


Q ss_pred             HHHCCceecc-CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         219 MKDAGLVTKP-ISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       219 l~~~gi~~~~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      |.++||.++. ..++++|+|++..+|++|+|+++++|++.
T Consensus       340 L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         340 LEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             HHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             HHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            9999999875 35689999999999999999999999763

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.1e-18  Score=147.52  Aligned_cols=225  Identities=15%  Similarity=0.103  Sum_probs=162.4

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +-+|+.+|.+     |++.++.++  +++++++.++.+.+.+|.+.    ++++|.++|+++|+++++|.+|+ .+.  .
T Consensus       137 g~~v~~~~~~~~g~~~~~~~~~~i--~~~t~lv~~~~v~~~tG~~~----pi~~i~~~~~~~g~~~~vD~~q~-~g~--~  207 (405)
T d1jf9a_         137 GAELRVIPLNPDGTLQLETLPTLF--DEKTRLLAITHVSNVLGTEN----PLAEMITLAHQHGAKVLVDGAQA-VMH--H  207 (405)
T ss_dssp             TCEEEEECBCTTSCBCGGGHHHHC--CTTEEEEEEESBCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTT-TTT--S
T ss_pred             CcEEEEECCCCCCcCCHHHHHHhc--cCCcEEEEEecCCCcccccC----chHHhhhHHHHcCCeeeccccee-ccc--c
Confidence            4566777633     688888888  67899999999999999998    99999999999999999999994 211  2


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC----------------------CCCCCcHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG----------------------STYGGNPLACKL  149 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a  149 (266)
                      .+....++.+.-+.+..|++| + ..+|++..+++..+.+.+....                      ..-+.+..+..+
T Consensus       208 ~id~~~~~~D~~~~s~hK~~G-p-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~  285 (405)
T d1jf9a_         208 PVDVQALDCDFYVFSGHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIG  285 (405)
T ss_dssp             CCCHHHHTCSEEEEEGGGTTS-C-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHH
T ss_pred             ccchhhcCCceeecccccccc-C-CCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHH
Confidence            234445555555555779975 3 4588899999887765532111                      112456667777


Q ss_pred             HHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547         150 AMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT  226 (266)
Q Consensus       150 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  226 (266)
                      +..+++.+..   +...++...+.+++.+.++. ++...... +...+   |++.|.++.   .++.++...|.++||.+
T Consensus       286 l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~-~~~~~~~~-~~~r~---~ivsf~~~~---~~~~~~~~~L~~~gI~v  357 (405)
T d1jf9a_         286 LGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYG-PQNRL---GVIAFNLGK---HHAYDVGSFLDNYGIAV  357 (405)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEES-CTTCC---SEEEEEETT---CCHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc-CCcccccC-CcCcC---cEEEEEcCC---CCHHHHHHHHHHCCcEE
Confidence            7788877654   45677777777777777776 43211111 11122   378888765   45778899999999998


Q ss_pred             ccC------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 KPI------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~~~------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +.+            ..+.+|+|++..+|++|+|++++.|+++.+-
T Consensus       358 ~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         358 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             EEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            643            2578999999999999999999999988754

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.80  E-value=2.5e-19  Score=154.77  Aligned_cols=238  Identities=11%  Similarity=0.038  Sum_probs=160.5

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      .+|.....+...+..++.++..       +.+.++..+.+. +..+++++++++|++|.+ ++.+.+++|.++|++++++
T Consensus       133 ~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~-~s~~~~~~i~~~a~~~~~~  211 (412)
T d1yaaa_         133 TWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLD-PTSEQWVQIVDAIASKNHI  211 (412)
T ss_dssp             CCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCE
T ss_pred             cCchhHHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCcccc-CCHHHHHHHHhhhccCCEE
Confidence            4455555567778888888852       577777777553 367788888889999987 9999999999999999999


Q ss_pred             EEEeccccCcCCcCccc-c------cccCC---CCcCeeeeccccc-CCchhhhhheecHHhhhccCC-----------C
Q psy6547          77 FIADEVQTGLGRTGKLL-A------IHYED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVP-----------G  134 (266)
Q Consensus        77 li~De~~~~~~~~g~~~-~------~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~-----------~  134 (266)
                      +|+||+|.++...+... +      .....   ....+.++||.++ +| +|+||++++.++.+.+..           .
T Consensus       212 ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (412)
T d1yaaa_         212 ALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKI  290 (412)
T ss_dssp             EEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHH
T ss_pred             EeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCc-CceEEEEEchhhhhhHHHHHHHHHHHHHHH
Confidence            99999998875544211 1      11112   2233445999999 88 999999987654332211           1


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHh------h--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEe
Q psy6547         135 THGSTYGGNPLACKLAMTALDVIL------E--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILS  205 (266)
Q Consensus       135 ~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~  205 (266)
                      ......+.+.+++.++...+..-.      .  +.+.+.++++++.+.+.|++ ++. ..+.......|+   |.|+.+ 
T Consensus       291 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~g~~~~~~~~~~~gG~---F~~~~l-  365 (412)
T d1yaaa_         291 IRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LGTPGNWDHIVNQCGM---FSFTGL-  365 (412)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCCTHHHHCCSS---EEECCC-
T ss_pred             HHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCceeCCCceE---EEecCc-
Confidence            233455567777777766654311      1  34566777788888888887 543 223331334566   555432 


Q ss_pred             eCccchHHHHHHHH-HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         206 VSAILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       206 ~~~~~~~~~~~~~l-~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                           + .+++++| .++||++.+++    ||+.+ ..++++++.+.++|.++++.
T Consensus       366 -----s-~e~~~~L~~e~~V~~~~g~----Ris~~-g~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         366 -----T-PQMVKRLEETHAVYLVASG----RASIA-GLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             -----C-HHHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred             -----C-HHHHHHHHHhCCEEECCCC----EEEec-cCCHHHHHHHHHHHHHHHHh
Confidence                 2 3456676 47799988863    88854 35778899999999998765

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.79  E-value=7.4e-20  Score=157.60  Aligned_cols=236  Identities=12%  Similarity=0.004  Sum_probs=156.8

Q ss_pred             CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547           5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL   76 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~   76 (266)
                      .+|.....+...+.+++.++..       +.+.+.+.+.. .++++++++++++|++|.+ ++.+.+++|.++|++|+++
T Consensus       132 ~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~-~s~e~~~~l~~~a~~~~~~  210 (401)
T d7aata_         132 SWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD-PRQEQWKELASVVKKRNLL  210 (401)
T ss_dssp             CCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCE
T ss_pred             CCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCcccc-CCHHHHHHHHHHHhcceEE
Confidence            4555555666778888888852       57777777744 4578899999999999987 9999999999999999999


Q ss_pred             EEEeccccCcCCcCccc-c-----cccC-CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCC-------CCCCCCC
Q psy6547          77 FIADEVQTGLGRTGKLL-A-----IHYE-DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPG-------THGSTYG  141 (266)
Q Consensus        77 li~De~~~~~~~~g~~~-~-----~~~~-~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~  141 (266)
                      ||+||+|.++...+... .     .... .....+.++||.++ +| +|+||++++....+.....       .......
T Consensus       211 ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (401)
T d7aata_         211 AYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSN  289 (401)
T ss_dssp             EEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeec-cccceeecchHHHHHHHHHHHHHHHHhhccccc
Confidence            99999998875443211 1     1111 12333456999998 88 9999999877655443211       1112223


Q ss_pred             CcHHHHHHHHHHHHHH------hh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchH
Q psy6547         142 GNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEV  212 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  212 (266)
                      .+.+.++++...+..-      ..  +.++++++++++.+.+.|++ .+. ..+....+..|+   |+|+.+      + 
T Consensus       290 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~G~---F~~~~l------s-  358 (401)
T d7aata_         290 PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGSSHNWQHITDQIGM---FCFTGL------K-  358 (401)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHCCSS---EEECCC------C-
T ss_pred             cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcceECCCCeE---EEecCC------C-
Confidence            4455555555444311      11  23556677777888888887 442 223321345677   776533      2 


Q ss_pred             HHHHHHH-HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         213 YDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       213 ~~~~~~l-~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .+++++| .|+||.+.|+    +||+.. ..++++|++++++|.+++
T Consensus       359 ~e~~~~L~~e~gV~~~pg----~Ris~a-~~~~~~i~~la~ai~~v~  400 (401)
T d7aata_         359 PEQVERLTKEFSIYMTKD----GRISVA-GVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEECCC----cEEEec-cCCHHHHHHHHHHHHHHh
Confidence            3456666 5679999987    399854 357788999999998875

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.79  E-value=1.1e-19  Score=156.98  Aligned_cols=217  Identities=10%  Similarity=0.057  Sum_probs=141.8

Q ss_pred             CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc---ccc----ccC
Q psy6547          27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL---LAI----HYE   98 (266)
Q Consensus        27 d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~---~~~----~~~   98 (266)
                      |.+++++.+.+ .++++++++++++|++|.+ ++.+.+++|+++|++||++||+||+|.++...+..   +..    ...
T Consensus       169 d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v-~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~  247 (412)
T d1ajsa_         169 DLQGFLSDLENAPEFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEG  247 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             cHHHHHHHHHhccCCcEEEEecCCCCCcCCC-CCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhc
Confidence            56666666544 4578888888899999987 99999999999999999999999999887544421   111    111


Q ss_pred             CCCcCeeeeccccc-CCchhhhhheecHHhhhccCC-------CCCCCCCCCcHHHHHHHHHHHHHH------hh--ccH
Q psy6547          99 DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVI------LE--ENM  162 (266)
Q Consensus        99 ~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~  162 (266)
                      .....+.++||.++ +| +|+||+++.....+.+..       .......+.+.+.+.++...+...      ..  +.+
T Consensus       248 ~~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (412)
T d1ajsa_         248 FELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTM  326 (412)
T ss_dssp             CCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCC-CCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            22333445899988 78 999999887544433221       112233344555665555444321      11  235


Q ss_pred             HHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccCCCCEEEEeccC
Q psy6547         163 IENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPISNNIIRLSPAL  240 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~iR~~~~~  240 (266)
                      .++++++++.+.+.|++ ++.. .+..-....|.   |.|+.+      +. +++++| .++||++.|++    ||++. 
T Consensus       327 ~~~l~~~r~~l~~~L~~-~~~~~~~~~i~~~~G~---F~~~~l------s~-~~v~~L~~e~gV~~vpg~----Ri~~a-  390 (412)
T d1ajsa_         327 ADRILSMRSELRARLEA-LKTPGTWNHITDQIGM---FSFTGL------NP-KQVEYLINQKHIYLLPSG----RINMC-  390 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCSSCCHHHHHCCSS---EEECCC------CH-HHHHHHHHTTCEECCTTS----EEEGG-
T ss_pred             HHHHHHHHHHHHHHHHH-hCCCCCeeeecCCCeE---EEecCC------CH-HHHHHHHHhCCEEEeCCC----eEEec-
Confidence            66677777888888877 4432 22221233566   544322      33 344555 57799999874    88844 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q psy6547         241 NITEQELREGLDIIINTINTM  261 (266)
Q Consensus       241 ~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ..+++++++++++|.++++++
T Consensus       391 g~~~~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         391 GLTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             GCCTTTHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHhc
Confidence            357889999999999999875

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.78  E-value=1.7e-17  Score=143.03  Aligned_cols=226  Identities=15%  Similarity=0.122  Sum_probs=162.6

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +..|+.++.+     +.++++.++  ++++++|.+..+++.+|.+.    ++++|.++|+++|+++++|-+|+ +|.  .
T Consensus       137 g~~v~~~~~~~~~~~~~~~l~~~~--~~~t~lv~i~~~~~~tG~~~----p~~~i~~~~~~~g~~~ivDa~q~-~g~--~  207 (408)
T d1t3ia_         137 GAVLKFVQLDEQESFDLEHFKTLL--SEKTKLVTVVHISNTLGCVN----PAEEIAQLAHQAGAKVLVDACQS-APH--Y  207 (408)
T ss_dssp             CCEEEEECBCTTSSBCHHHHHHHC--CTTEEEEEEESBCTTTCBBC----CHHHHHHHHHHTTCEEEEECTTT-TTT--S
T ss_pred             CceEeeeeccccccccHHHhhhcc--CCCceEEEEecccccccccC----cHHHHhhhhhccCceeeecccee-ccc--c
Confidence            4556666643     588888888  67899999999999999998    89999999999999999999994 321  1


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPLACKLA  150 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~  150 (266)
                      .+.+..++.+.-+.+..|+++ + ..+|++..+++......+...+                     ..-+.+..+..++
T Consensus       208 ~id~~~~~~D~~~~s~hK~~g-p-~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l  285 (408)
T d1t3ia_         208 PLDVQLIDCDWLVASGHKMCA-P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIAL  285 (408)
T ss_dssp             CCCHHHHTCSEEEEEGGGTTS-C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHH
T ss_pred             cccccccCCceEEeccccccC-C-CCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHH
Confidence            233444554444444669865 3 4588899998877655432111                     1224566667777


Q ss_pred             HHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcc--cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547         151 MTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASF--KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL  224 (266)
Q Consensus       151 ~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  224 (266)
                      ..+++.+..   +++.++..++.+++.+.+.+ .+. ..+..  .....+.   ++.|.++.   .+++++...|.++||
T Consensus       286 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~---iv~f~~~~---~~~~~v~~~L~~~gI  358 (408)
T d1t3ia_         286 GAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAA---LASFNVAG---LHASDVATMVDQDGI  358 (408)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCS---EEEEEETT---BCHHHHHHHHHTTTE
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc-CccccccCCCccccCcce---EEEEEeCC---CCHHHHHHHHhhCCc
Confidence            777877654   56778888899999888887 432 11111  0111233   77777654   568889999999999


Q ss_pred             eeccC------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKPI------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       225 ~~~~~------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .++.+            ..+.+|+|++..+|++|+|++++.|+++++.
T Consensus       359 ~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         359 AIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             ECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            98753            2468999999999999999999999998864

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3.8e-19  Score=148.43  Aligned_cols=225  Identities=12%  Similarity=0.128  Sum_probs=148.3

Q ss_pred             CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCc
Q psy6547          27 DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP  102 (266)
Q Consensus        27 d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~  102 (266)
                      |++.++..+...    +.+..++++...++.|...++.+++++|+++|++||+++++|+++.++...+..+.........
T Consensus       111 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~  190 (343)
T d1m6sa_         111 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  190 (343)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccc
Confidence            788888888542    3577777777766666666999999999999999999999999996542211111111112234


Q ss_pred             Ceeeeccccc-CCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Q psy6547         103 DIVILGKALS-GGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       103 d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  179 (266)
                      +..+++|..+ +| .+.++.....+........  ....+........  +.............+...++...+.+.+..
T Consensus       191 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T d1m6sa_         191 DSVMFCLSKGLCA-PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLA--AAGIIALTKMVDRLKEDHENARFLALKLKE  267 (343)
T ss_dssp             SEEEEESSSTTCC-SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHH--HHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc-cccccccccHHHHhhhHhhCcccccccchhHHHH--HhhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Confidence            4555666555 44 5677777777665444322  1222332222222  222222223334455566666666666666


Q ss_pred             ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                       +.......  ....+   ++++.++.. +.++.+|+++|+++||++++.+.+++|++++..+|+||||+++++|+++++
T Consensus       268 -~~~~~~~~--~~~~~---~v~~~~~~~-~~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~  340 (343)
T d1m6sa_         268 -IGYSVNPE--DVKTN---MVILRTDNL-KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR  340 (343)
T ss_dssp             -HTCBCCGG--GCCSS---EEEEECTTS-SSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -hccCccCC--CCCce---EEEEEeCCC-cccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence             43322221  12234   788877642 356889999999999999998899999999999999999999999999998


Q ss_pred             HH
Q psy6547         260 TM  261 (266)
Q Consensus       260 ~~  261 (266)
                      ++
T Consensus       341 ~~  342 (343)
T d1m6sa_         341 KF  342 (343)
T ss_dssp             HH
T ss_pred             Hh
Confidence            86

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1e-19  Score=156.52  Aligned_cols=238  Identities=13%  Similarity=0.075  Sum_probs=152.9

Q ss_pred             cCCcCcccccCCCCCCceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547           4 TTDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV   75 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~   75 (266)
                      ..+|.....+...+.+++.++..       |.+++.+.+.. .++++++++++.+|++|.+ ++.+.+++|.++|++|++
T Consensus       129 P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~  207 (397)
T d3tata_         129 PTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKAREL  207 (397)
T ss_dssp             SCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCC-CCHHHHHHHHHHHHHTTC
T ss_pred             cCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCee-CCHHHHHHHHHHHhhcCe
Confidence            45666666678888999999863       46666666644 3367777788888989987 999999999999999999


Q ss_pred             EEEEeccccCcCCcCcc--ccc-c--cC-CCCcCeeeeccccc-CCchhhhhheecHHhhhccCC-------CCCCCCCC
Q psy6547          76 LFIADEVQTGLGRTGKL--LAI-H--YE-DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVP-------GTHGSTYG  141 (266)
Q Consensus        76 ~li~De~~~~~~~~g~~--~~~-~--~~-~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~-------~~~~~~~~  141 (266)
                      ++|+||+|.++...+..  ... .  .. .....+.++||.++ +| +|+||++++....+....       .......+
T Consensus       208 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T d3tata_         208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSS  286 (397)
T ss_dssp             CCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTT-TCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSS
T ss_pred             eEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccC-ccccccccchhHHHHHHHHHHHHHHHhhccccc
Confidence            99999999887443321  111 1  11 12334455999998 79 999999877654433221       12333344


Q ss_pred             CcHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHH
Q psy6547         142 GNPLACKLAMTALDVILE--------ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVY  213 (266)
Q Consensus       142 ~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  213 (266)
                      ++...++++...+..-..        +.+.++++++++.+.+.|........+.......|+   |.|+.+.       .
T Consensus       287 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~---F~~~~ls-------~  356 (397)
T d3tata_         287 PPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGM---FSYTGLS-------A  356 (397)
T ss_dssp             CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSS---BCCCCCC-------H
T ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCce---EEecCcC-------H
Confidence            455556555544432110        123444455555555555551112223322445677   7776542       3


Q ss_pred             HHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         214 DVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       214 ~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      +++++|+ |+||.+.|++    ||+.+ +.++++|+++.++|.+++
T Consensus       357 e~~~~L~~e~~V~l~~g~----Ri~~a-~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         357 AQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHTTTTCEECCSSS----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCEEeCCCC----EEEec-cCCHHHHHHHHHHHHHhC
Confidence            4567775 5699998864    88854 457889999999988763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-17  Score=142.29  Aligned_cols=224  Identities=14%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      |.++++..+... +++++.+..+.+.+|.+.    ++++|.++|+++|+++++|.+++ ++.  ..+.++.++++.-+.+
T Consensus       132 ~~~~~~~~~~~~-~~~~v~~~~~~n~tG~i~----pi~~i~~~~~~~g~~~~vD~~qs-~g~--~~~d~~~~~~D~~~~s  203 (388)
T d1h0ca_         132 TLQEVEEGLAQH-KPVLLFLTHGESSTGVLQ----PLDGFGELCHRYKCLLLVDSVAS-LGG--TPLYMDRQGIDILYSG  203 (388)
T ss_dssp             CHHHHHHHHHHH-CCSEEEEESEETTTTEEC----CCTTHHHHHHTTTCEEEEECTTT-TTT--SCCCTTTTTCSEEEEE
T ss_pred             chHHHHHHhccC-CcceEEEeeeeecccccc----CHHHHHHHhhcccccceeccccc-ccc--ccccccccccceeccc
Confidence            567777766443 578888999999999987    99999999999999999999994 211  2233444444433344


Q ss_pred             ecccccCCchhhhhheecHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhh---c
Q psy6547         107 LGKALSGGLYPISAVLADDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILE---E  160 (266)
Q Consensus       107 ~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~---~  160 (266)
                      ..|++++. ..+|++..+....+.+...                       ......+++.....+...+++.+..   +
T Consensus       204 ~~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~  282 (388)
T d1h0ca_         204 SQKALNAP-PGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLE  282 (388)
T ss_dssp             SSSTTCCC-TTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ccccccCC-CceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccc
Confidence            55998855 4567777777766554321                       1112234555666677777777655   3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC----CCCEE
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI----SNNII  234 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~i  234 (266)
                      ...++..++.+++++.+.. ++... ..........   ++.|.+++  +.++.++.+.|+++ ||.++.+    .++.+
T Consensus       283 ~~~~~~~~l~~~l~~~~~~-~g~~~~~~~~~~rs~~---i~~~~~p~--~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~i  356 (388)
T d1h0ca_         283 NSWRQHREAAAYLHGRLQA-LGLQLFVKDPALRLPT---VTTVAVPA--GYDWRDIVSYVIDHFDIEIMGGLGPSTGKVL  356 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTT---EEEEECCT--TCCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred             cccccccchhHHHHHHHhh-cCcccccCCHHHcCCe---EEEEECCC--CCCHHHHHHHHHhcCCEEEeCCchhhcCCEE
Confidence            4677778888888888887 55422 2221222344   67888877  67889999998765 9988764    45789


Q ss_pred             EEe-ccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         235 RLS-PALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       235 R~~-~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                      |++ +++.+|.+|+|+++++|+++++++.++|
T Consensus       357 Ris~~g~~~t~edid~li~aL~~~L~~l~k~~  388 (388)
T d1h0ca_         357 RIGLLGCNATRENVDRVTEALRAALQHCPKKK  388 (388)
T ss_dssp             EEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence            999 5678899999999999999999876654

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.2e-19  Score=153.30  Aligned_cols=235  Identities=14%  Similarity=0.121  Sum_probs=151.1

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +|.....+...+.+++.++..       +...+++...+ .++++++++++++|++|.+ ++.+.+++|.++|++|+++|
T Consensus       130 y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~-~s~e~~~~l~~la~~~~~~i  208 (396)
T d2q7wa1         130 WPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLP  208 (396)
T ss_dssp             CTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEE
T ss_pred             CccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCee-cCHHHHHHHHHHHhcCCeEE
Confidence            444444556677788887753       45555655544 4467888888889999987 99999999999999999999


Q ss_pred             EEeccccCcCCcCccc--cc----ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCC-------CCCCCCCCc
Q psy6547          78 IADEVQTGLGRTGKLL--AI----HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPG-------THGSTYGGN  143 (266)
Q Consensus        78 i~De~~~~~~~~g~~~--~~----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~  143 (266)
                      |+||+|.++...+...  ..    ........+.++||.++ +| +|+||++++....+.....       ......+++
T Consensus       209 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (396)
T d2q7wa1         209 LFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP  287 (396)
T ss_dssp             EEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             EEeccccccccCCccCchHhhhhhhhcccccccccccccccccC-CCccccccchhHHHHHHHhhhhhhhhhhccccCCC
Confidence            9999998875433211  11    11222344455899988 88 9999999876655443321       112222334


Q ss_pred             HHHHHHHHHHHHH------Hhh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHH
Q psy6547         144 PLACKLAMTALDV------ILE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYD  214 (266)
Q Consensus       144 ~~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  214 (266)
                      ...+.++...+..      +..  +.++++++++++.+.+.|++ ++. ..+..-....|.   |.|+.+      + .+
T Consensus       288 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~G~---F~~~~l------~-~e  356 (396)
T d2q7wa1         288 AHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSFIIKQNGM---FSFSGL------T-KE  356 (396)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTHHHHCCSS---EEECCC------C-HH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcceecCCCeE---EEeeCC------C-HH
Confidence            4445444433321      111  23556677788888888887 443 223221334577   776543      2 34


Q ss_pred             HHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         215 VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       215 ~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      ++++|+ |+||.+.+++    |+++. ..++++|++++++|.+++
T Consensus       357 ~~~~L~~e~gV~~~~g~----Ri~~a-~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         357 QVLRLREEFGVYAVASG----RVNVA-GMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCEEECCCC----EEEec-CCCHHHHHHHHHHHHHhC
Confidence            566665 6799998865    88854 347788999999988763

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=1.9e-18  Score=146.95  Aligned_cols=230  Identities=9%  Similarity=0.027  Sum_probs=134.9

Q ss_pred             ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcCccccccc
Q psy6547          20 YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHY   97 (266)
Q Consensus        20 v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g~~~~~~~   97 (266)
                      +..++++|+++|++.+  ++++++|++++++|+++   ++..++++|+++|++||+++++||+|...  ...+.+. ...
T Consensus       115 ~~~v~~~d~e~l~~~i--~~~tk~i~~~~p~n~~~---~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~-~~~  188 (366)
T d2aeua1         115 AKYFESDKVGEILNKI--DKDTLVIITGSTMDLKV---IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP-ALK  188 (366)
T ss_dssp             CEEEEESCHHHHHTTC--CTTEEEEEECBCTTSCB---CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC-HHH
T ss_pred             CeEECCCCHHHHHHhc--CCCceEEEEEecCCCCc---CCHHHHHHHHHHhccCcEEEEEecCccccccccccCCC-Hhh
Confidence            3456778999999999  66899999988766532   56679999999999999999999999431  1111111 112


Q ss_pred             CCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHH
Q psy6547          98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA---YKMGEIFR  174 (266)
Q Consensus        98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~---~~~~~~l~  174 (266)
                      .+.+..+.++||++ +| +++||+++++++++.+........++.++..+.++..+|+.+.-+.+.++.   ++....+.
T Consensus       189 ~~~di~~~S~sK~~-~g-~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~  266 (366)
T d2aeua1         189 LGADLVVTSTDKLM-EG-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKI  266 (366)
T ss_dssp             HTCSEEEEETTSSS-SS-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
T ss_pred             cCceEEEecccccc-cc-cceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34443344456655 46 899999999999988875544555667788888887777643222222222   22222222


Q ss_pred             HHhhccccc-CCCcc-cEEecCccceeeEEEEeeCc---cchHHHHHHHHH-HCCceeccC-----CCCEEEEeccCCCC
Q psy6547         175 SELSSPANK-SKASF-KLSSGGLKKSINTLILSVSA---ILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNIT  243 (266)
Q Consensus       175 ~~l~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~gi~~~~~-----~~~~iR~~~~~~~t  243 (266)
                      +.+...... ..... .....+.  -+++.......   ..+..+++.+|+ +.||.+.|+     +.+++||+.....+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~  344 (366)
T d2aeua1         267 EKLNKELKAIDDNINIVYERTPT--GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDA  344 (366)
T ss_dssp             HHHHHHHTTTCTTEEEEEEECSS--EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGG
T ss_pred             hhhhccccccccccCcccccCcc--chhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccch
Confidence            222221111 11111 0111222  03333333211   124567888876 559988764     45799999654432


Q ss_pred             HH-HHHHHHHHHHHHHH
Q psy6547         244 EQ-ELREGLDIIINTIN  259 (266)
Q Consensus       244 ~~-~i~~~~~~l~~~~~  259 (266)
                      ++ +.+.+++.|.+.++
T Consensus       345 ~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         345 ERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             GGSCHHHHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHH
Confidence            22 34555555555443

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-16  Score=136.79  Aligned_cols=227  Identities=14%  Similarity=0.120  Sum_probs=147.5

Q ss_pred             CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      +.+|+.++.+     |++++++++  ++++++|+++.++|++|.+.    ++++|.++|+++|+++++|.+|+ ++.  .
T Consensus       117 G~~v~~v~~~~~~~~d~~~~~~~i--~~~T~lv~is~~~n~tG~~~----~~~~I~~~~~~~~~~~ivD~~~~-~g~--~  187 (391)
T d1p3wa_         117 GFEVTYLAPQRNGIIDLKELEAAM--RDDTILVSIMHVNNEIGVVQ----DIAAIGEMCRARGIIYHVDATQS-VGK--L  187 (391)
T ss_dssp             TCEEEEECCCTTSCCCHHHHHHHC--CTTEEEEECCSBCTTTCCBC----CHHHHHHHHHHHTCEEEEECTTT-BTT--B
T ss_pred             CCEEEEeCCCCCCeEcHHHHHHhC--CCCcEEEEEECCCCCCeeEC----CHHHHHHHhccCCcEEEEeeccc-cCC--c
Confidence            5778888754     589999999  67899999999999999997    89999999999999999999994 221  1


Q ss_pred             ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC-------CCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG-------STYGGNPLACKLAMTALDVILE--ENM  162 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~  162 (266)
                      ++.+...+.+....+..|++|+  ...|++..+++..+...+...+       ...+.+.....+...+++....  ...
T Consensus       188 ~~d~~~~~~D~~~~s~~k~~g~--~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (391)
T d1p3wa_         188 PIDLSQLKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATE  265 (391)
T ss_dssp             CCCTTTSCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhccccccccccccccCC--CceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHH
Confidence            2334444444444557788753  3468888887766665543221       2223333333333333333322  234


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------------
Q psy6547         163 IENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------------  229 (266)
Q Consensus       163 ~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------  229 (266)
                      .++++++...+.+.|.+ +....+.. .......   ++.+..+.   .+..++...|.  ++.++.+            
T Consensus       266 ~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~  336 (391)
T d1p3wa_         266 MERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPN---ILNVSFNY---VEGESLIMALK--DLAVSSGSACTSASLEPSY  336 (391)
T ss_dssp             HHHHHHHHHHHHHTTTT-STTEEECSCTTTSCTT---EEEEEETT---SCHHHHHHHTT--TEECBCCCC------CCCH
T ss_pred             HHHHHHHHHHHHHHHHh-hcCeeecccccccCce---EEEEEeCC---CChHHHHHHhC--CCEEEccccccCCccchhH
Confidence            56677777778777776 43311111 0112233   45555544   45666777664  3333321            


Q ss_pred             -----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547         230 -----------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  263 (266)
Q Consensus       230 -----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~  263 (266)
                                 ..+++|+|++..+|++|++++++.|+++++++.+
T Consensus       337 ~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         337 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  381 (391)
T ss_dssp             HHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                       1257999999999999999999999999988643

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.73  E-value=2.7e-16  Score=132.81  Aligned_cols=208  Identities=13%  Similarity=0.171  Sum_probs=148.2

Q ss_pred             cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeec--ccccCC
Q psy6547          37 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGG  114 (266)
Q Consensus        37 ~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g  114 (266)
                      ..++++++.+..+.+.+|.+.    ++++|.++|++||+++++|.+|+ +|.  ..+.++.  ...|+.++|  |+++|+
T Consensus       124 ~~~~~~~v~~~~~~~~tG~~~----~i~~i~~~~~~~g~~~~vDa~qs-~G~--~~~d~~~--~~~D~~~~s~~K~l~gp  194 (361)
T d1m32a_         124 ADPTISHIAMVHSETTTGMLN----PIDEVGALAHRYGKTYIVDAMSS-FGG--IPMDIAA--LHIDYLISSANKCIQGV  194 (361)
T ss_dssp             HCTTCCEEEEESEETTTTEEC----CHHHHHHHHHHHTCEEEEECTTT-TTT--SCCCTTT--TTCSEEEEESSSTTCCC
T ss_pred             hccCccceEEEeeecccccch----hhhhhhhhhcccceeeEeecccc-cCc--ccccccc--cccceEEeeecccccCC
Confidence            366899999999999999988    99999999999999999999995 221  2233333  456666654  999865


Q ss_pred             chhhhhheecHHhhhccCCCC------------------CCCCCCCcHHHHHHHHHHHHHHhhcc----HHHHHHHHHHH
Q psy6547         115 LYPISAVLADDEVMGTLVPGT------------------HGSTYGGNPLACKLAMTALDVILEEN----MIENAYKMGEI  172 (266)
Q Consensus       115 ~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~  172 (266)
                       ..+|++..+++..+...+..                  .....+++.....+...+++....++    ...+.+...+.
T Consensus       195 -~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (361)
T d1m32a_         195 -PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRS  273 (361)
T ss_dssp             -SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             -CCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence             55888999988887766431                  22334566667777777776655543    44555666667


Q ss_pred             HHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCCCHHHHHH
Q psy6547         173 FRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELRE  249 (266)
Q Consensus       173 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~  249 (266)
                      +++.++. .+.............   ++.|.+++....+..++++.|.++||.+.++   ..+.+|+++...++++|+++
T Consensus       274 l~~~~~~-~g~~~~~~~~~rs~~---v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~  349 (361)
T d1m32a_         274 LVAGMRA-LGFNTLLDDELHSPI---ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITA  349 (361)
T ss_dssp             HHHHHHH-TTCCBSSCGGGBCSS---EEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHH
T ss_pred             HHHHHhh-cCCcccCChhhcCCc---EEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHH
Confidence            7777776 544322221112234   5677777643567889999999999998754   45789999765689999999


Q ss_pred             HHHHHHHHH
Q psy6547         250 GLDIIINTI  258 (266)
Q Consensus       250 ~~~~l~~~~  258 (266)
                      ++++|++++
T Consensus       350 lv~al~~~L  358 (361)
T d1m32a_         350 LLTAIRTAM  358 (361)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999999875

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=3.9e-18  Score=146.30  Aligned_cols=234  Identities=14%  Similarity=0.062  Sum_probs=148.7

Q ss_pred             CcCcccccCCCCCCceeecCC-------CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547           6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF   77 (266)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l   77 (266)
                      +|.....+...+.+++.+++.       +.+++++..+. .++++++++++.+||+|.+ ++.+.+++|+++|++|++++
T Consensus       127 ~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~-~s~e~~~~l~~la~~~~~~i  205 (394)
T d2ay1a_         127 WPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGAN-LTLDQWAEIASILEKTGALP  205 (394)
T ss_dssp             CHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEE
T ss_pred             ccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHhhcceEEE
Confidence            344444555667788888753       35666666644 3456777777788888877 99999999999999999999


Q ss_pred             EEeccccCcCCcCccc--cc----ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCC-------CCCCCCCCc
Q psy6547          78 IADEVQTGLGRTGKLL--AI----HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPG-------THGSTYGGN  143 (266)
Q Consensus        78 i~De~~~~~~~~g~~~--~~----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~  143 (266)
                      |+||+|.++...+...  ..    ........+.++||.++ .| +|+||+.+.....+.....       .......++
T Consensus       206 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (394)
T d2ay1a_         206 LIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPP  284 (394)
T ss_dssp             EEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             EEeccchhhcccccccchhhhhhhhhcccccccccccccccCCc-ccccchhhchhHHHHHHHhhhhhHhhhcccccchh
Confidence            9999998885443211  11    11112233445899888 78 9999998876554433211       112222233


Q ss_pred             HHHHHHHHHHHHH------Hhh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHH
Q psy6547         144 PLACKLAMTALDV------ILE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYD  214 (266)
Q Consensus       144 ~~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  214 (266)
                      ...++.+...+..      +..  +.+.+++.++++.+.+.|++ ++. ..+....+..|+   |.|+.+      + .+
T Consensus       285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~~~~G~---F~~~~l------s-~~  353 (394)
T d2ay1a_         285 FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHRGM---FSRLGA------T-PE  353 (394)
T ss_dssp             CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCCSS---EEECCC------C-HH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCceeeECCCcee---EEecCc------C-HH
Confidence            3344443333321      111  23566777778888888877 442 234432345677   777543      2 34


Q ss_pred             HHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547         215 VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  257 (266)
Q Consensus       215 ~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~  257 (266)
                      ++++|+ ++||++.|++    ||+.+ ..++++|+++.++|.++
T Consensus       354 ~~~~L~~~~~V~~~~g~----Ri~~a-~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         354 QVKRIKEEFGIYMVGDS----RINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecCCC----EEEec-CCCHHHHHHHHHHHHHh
Confidence            567775 7799999863    88854 45778899888888764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.71  E-value=3.1e-17  Score=142.35  Aligned_cols=218  Identities=12%  Similarity=0.111  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCc
Q psy6547          26 NDVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP  102 (266)
Q Consensus        26 ~d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~  102 (266)
                      .|+++|++.++++   +++.+|+++.+.+.+|.+.    ++++|.++|++||+++++|++|.+.......+.........
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~----~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~  269 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD----DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  269 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC----CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCcccc----CHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc
Confidence            4899999999762   3577777777777777765    89999999999999999999995432111111111122345


Q ss_pred             Ceee--ecccccCCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Q psy6547         103 DIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS  179 (266)
Q Consensus       103 d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  179 (266)
                      |+++  .+|.++++ ...|++.. ++...+.+.......+.......+.++...+......++.++..++.++++++|++
T Consensus       270 D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~  348 (434)
T d2z67a1         270 DAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND  348 (434)
T ss_dssp             SEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccC-CCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            6666  55999866 55666655 45566666544444444333333333333333223345777788888999988887


Q ss_pred             cccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---------------CCCCEEEEeccCCCC
Q psy6547         180 PANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---------------ISNNIIRLSPALNIT  243 (266)
Q Consensus       180 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---------------~~~~~iR~~~~~~~t  243 (266)
                       +.. ..... . ....   ...+.+..  ..++.++...|.++||....               ...+++|++++..+|
T Consensus       349 -l~~~~g~~l-l-~~~~---~~~~~~~~--~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T  420 (434)
T d2z67a1         349 -LSKKTGGKF-L-DVES---PIASCISV--NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVR  420 (434)
T ss_dssp             -HHHHSSCCB-C-CCCC---SSEEEEEC--SSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCC
T ss_pred             -hhhhcCcee-c-CCCC---Cceeeeec--CCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCC
Confidence             432 22221 1 1111   22222222  23678899999999986531               124789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6547         244 EQELREGLDIIIN  256 (266)
Q Consensus       244 ~~~i~~~~~~l~~  256 (266)
                      +||||+++++|++
T Consensus       421 ~edID~~i~~L~k  433 (434)
T d2z67a1         421 TEDIVNSVSKLEK  433 (434)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999986

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.69  E-value=2.5e-17  Score=141.97  Aligned_cols=208  Identities=14%  Similarity=0.040  Sum_probs=140.2

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      |.+.+++.+  +++++++++++++||+|.+..           +..+++.+|.||+|.+....  .. ........-+.+
T Consensus       185 D~~~~~~~~--~~~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~--~~-~~~~~~~Ivl~S  248 (425)
T d2hoxa1         185 NAANYVNVS--NPEQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYT--PI-KYKADEDILLFT  248 (425)
T ss_dssp             EGGGGTTCS--CGGGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCSTTTS--CC-CSCBCCSEEEEE
T ss_pred             CHHHHHhhC--CCCceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccCcccc--ch-hhhcCCeEEEEe
Confidence            566666555  457889888888999998631           23478999999999542111  11 112233445556


Q ss_pred             eccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-------------ccHHHHHHHHHH
Q psy6547         107 LGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-------------ENMIENAYKMGE  171 (266)
Q Consensus       107 ~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-------------~~~~~~~~~~~~  171 (266)
                      +||.++ +| +|+||+++ ++.+.+.+.......+++.+.+++.++..+|+....             +..++.++++.+
T Consensus       249 ~SK~fglaG-lRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  327 (425)
T d2hoxa1         249 MSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (425)
T ss_dssp             HHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             CHHhccCcc-hheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 99 99999766 456666666555566777888999888888865321             123555666777


Q ss_pred             HHHHHhhcccccC---C---------CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEE
Q psy6547         172 IFRSELSSPANKS---K---------ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNII  234 (266)
Q Consensus       172 ~l~~~l~~~~~~~---~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~i  234 (266)
                      .+++.|.+ .+..   .         +.......+.   |.|+.+...   +.++..+.|+++||.++|+     +++++
T Consensus       328 ~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~---f~wl~~~~~---~~~~~~~lL~e~gI~v~pGs~FG~~~~yv  400 (425)
T d2hoxa1         328 NITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPS---YAWVKCEWE---EDKDCYQTFQNGRINTQNGVGFEASSRYV  400 (425)
T ss_dssp             HHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCS---EEEEEECSG---GGCSHHHHHHHTTEECEEGGGGTSCTTEE
T ss_pred             HHHHHHHh-cCCceeeccCCccceeeeeeccCCCcc---eeeeeCCCC---hHHHHHHHHHhCCEEEEechhcCCCCCEE
Confidence            77777776 4321   1         1111233455   778877651   2233455677999999975     46899


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         235 RLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       235 R~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      |++  +..+++++++++++|++++++
T Consensus       401 Ris--l~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         401 RLS--LIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             EEE--CSSCHHHHHHHHHHHHHHHTC
T ss_pred             EEE--ecCCHHHHHHHHHHHHHHHhc
Confidence            999  678999999999999998753

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.69  E-value=6.6e-16  Score=132.43  Aligned_cols=218  Identities=14%  Similarity=0.163  Sum_probs=146.1

Q ss_pred             CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547          26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      .+++++++++  ++++++|.+..+++.+|.+.    ++++|.++|+++|+.+++|-+|+ ++.  .....+..+.+....
T Consensus       152 ~~~~~~~~~i--~~~T~lV~i~~v~~~tG~~~----pv~~i~~~~~~~~~~~~vD~~q~-~g~--~~~~~~~~~~d~~~~  222 (404)
T d1qz9a_         152 DSPEELPQAI--DQDTAVVMLTHVNYKTGYMH----DMQALTALSHECGALAIWDLAHS-AGA--VPVDLHQAGADYAIG  222 (404)
T ss_dssp             SSGGGHHHHC--STTEEEEEEESBCTTTCBBC----CHHHHHHHHHHHTCEEEEECTTT-TTT--SCCCHHHHTCSEEEE
T ss_pred             ccchhHHHhc--CCCceEEEEeccccccccee----cHHHHhccccccccceeEEeecc-ccc--cccccccccceEEEE
Confidence            3678888888  67899999999999999998    99999999999999999999994 321  122344445444455


Q ss_pred             eecccccCCchhhhhheecHHhhhccCCCC-----------------------CCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547         106 ILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------------HGSTYGGNPLACKLAMTALDVILE---  159 (266)
Q Consensus       106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~l~~~~~---  159 (266)
                      +..|++.+|....|++..+....+.+....                       .....+.+.........+++.+..   
T Consensus       223 s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (404)
T d1qz9a_         223 CTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM  302 (404)
T ss_dssp             CSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH
T ss_pred             echhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhH
Confidence            566988644122566667766655443210                       111224455566666666666554   


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEE
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIR  235 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR  235 (266)
                      +...++...+...+.+.+........+..    .....+.   ++.|..++     +.++++.|.++||.+....++.||
T Consensus       303 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~---~vsf~~~~-----~~~v~~~L~~~gi~~~~r~~~~lR  374 (404)
T d1qz9a_         303 ASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS---HVSFEHPE-----GYAVIQALIDRGVIGDYREPRIMR  374 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS---EEEEECTT-----HHHHHHHHHTTTEECEEETTTEEE
T ss_pred             HHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee---EEEEecCC-----HHHHHHHHHHCCCEEeecCCCeEE
Confidence            33555555555555554443111122211    0111233   77776654     678999999999987665678999


Q ss_pred             Eec-cCCCCHHHHHHHHHHHHHHHHH
Q psy6547         236 LSP-ALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       236 ~~~-~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +|+ |+++|++|++++++.|++++++
T Consensus       375 iS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         375 FGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             EECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            998 5789999999999999999876

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=1.1e-15  Score=128.96  Aligned_cols=233  Identities=12%  Similarity=0.133  Sum_probs=140.8

Q ss_pred             CCCCCCceeecCC-------CHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547          14 GPHMPGYNIIPYN-------DVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ   83 (266)
Q Consensus        14 ~~~~~~v~~~~~~-------d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~   83 (266)
                      ...+.+++.+|++       |++++++++++.   .++++|+++.++|++|.+.    ++++|.++|++||+++++|++|
T Consensus       104 ~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~----~l~~I~~ia~~~~i~livD~a~  179 (364)
T d2e7ja1         104 ERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP----DVKKIAKVCSEYDVPLLVNGAY  179 (364)
T ss_dssp             HHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC----CHHHHHHHHHTTTCCEEEECTT
T ss_pred             HhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceee----cchhheeccccccchhhccccc
Confidence            3456778888764       589999999652   3578888998999999886    7999999999999999999999


Q ss_pred             cCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC--------CCCCCcHHHHHHHHHHHH
Q psy6547          84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG--------STYGGNPLACKLAMTALD  155 (266)
Q Consensus        84 ~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~l~  155 (266)
                      + ++..+  .....++.+.-+.+++|+++++ .++|+++.++++.+.+......        ...........+..++++
T Consensus       180 ~-~g~~~--~~~~~~g~D~~~~S~~K~~~~~-g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  255 (364)
T d2e7ja1         180 A-IGRMP--VSLKEIGADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP  255 (364)
T ss_dssp             T-BTTBC--CCHHHHTCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH
T ss_pred             h-hhhhh--hcccccccceeeeccccccCCC-CCEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH
Confidence            4 32221  1223334333334466999966 5689999988877655422110        001112222333344444


Q ss_pred             HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceec
Q psy6547         156 VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTK  227 (266)
Q Consensus       156 ~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~  227 (266)
                      ....  +.+. +..++.+++.+.+.+ ++...+...+... .   ...+..+...      ......+...+.+.|+...
T Consensus       256 ~~~~~~~~~~-~~~~~~~~~~~~l~~-~g~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (364)
T d2e7ja1         256 HVRERIKRWD-EEVEKARRFAAEMEK-LGIKQLGDNPHNH-D---LMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI  329 (364)
T ss_dssp             HHHHHGGGHH-HHHHHHHHHHHHHHH-TTCEEESSSSCCS-S---EEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECS
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHH-cCCeecCCCCCCc-c---eEEEeccchHHHHHHhhccchHHHHHHHhcCCcee
Confidence            4332  2233 334556677777776 4432222111111 1   3333322200      0112234556777777654


Q ss_pred             -cCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 -PISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 -~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                       ++....+|++ .+..|++++++++++|++++++.
T Consensus       330 ~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         330 KPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             CTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcceEEEe-ccCCCHHHHHHHHHHHHHHHHHh
Confidence             4445677776 45679999999999999998763

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1.6e-14  Score=122.69  Aligned_cols=224  Identities=15%  Similarity=0.096  Sum_probs=143.3

Q ss_pred             CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCC
Q psy6547          16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGR   88 (266)
Q Consensus        16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~   88 (266)
                      .+.+|+.+|.+     |++++++++  ++++++++++.+++++|.+.    +++++.++++.+  |+++++|.+|+ ++.
T Consensus       112 ~g~~v~~vp~~~~~~id~~~l~~~i--~~~t~lv~is~v~~~tG~~~----~~~~i~~~~~~~~~~~~~~vD~~q~-~g~  184 (376)
T d1eg5a_         112 KGFKVKYVPVDSRGVVKLEELEKLV--DEDTFLVSIMAANNEVGTIQ----PVEDVTRIVKKKNKETLVHVDAVQT-IGK  184 (376)
T ss_dssp             TTCEEEECCBCTTSCBCHHHHHHHC--CTTEEEEEEESBCTTTCBBC----CHHHHHHHHHHHCTTCEEEEECTTT-TTT
T ss_pred             cCCEEEEEcCCCCCeECHHHHHHhc--CCCceEEEEECCccccceee----eehhhhhhhhhcccCceeEEEeeec-ccc
Confidence            35677777743     689999999  66899999999999999987    888898888555  89999999994 321


Q ss_pred             cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-------CCCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVILE--  159 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~--  159 (266)
                        .+..+..++.+.-+.+..|+++ + ...|++..+++.  .+++..       .......+......+.........  
T Consensus       185 --~~~d~~~~~~D~~~~s~~K~~g-p-~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (376)
T d1eg5a_         185 --IPFSLEKLEVDYASFSAHKFHG-P-KGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEEL  258 (376)
T ss_dssp             --SCCCCTTTCCSEEEEEGGGGTS-C-TTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTH
T ss_pred             --ccccccccCccceecccceeec-C-CCceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccch
Confidence              1233444455555555889976 2 335555555442  222211       112223344444444444443332  


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC---------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---------  230 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------  230 (266)
                      .....+......++.+.|.. .....+.........   .+.+.++.   .++..+...|.++||.++.+.         
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~  331 (376)
T d1eg5a_         259 SEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPN---TLSVSFPN---IRGSTLQNLLSGYGIYVSTSSACTSKDERL  331 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTT---EEEEECTT---CCHHHHHHHHHHTTEECBC-----------
T ss_pred             hhhhhhhhhhhhhhcccccc-ccccccccccccccc---eeeeccCC---CCHHHHHHHHhhCCeEEeCcchhcCCccch
Confidence            23445555566667777766 332111110111222   45555544   467889999999999887531         


Q ss_pred             --------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547         231 --------------NNIIRLSPALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       231 --------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~  259 (266)
                                    .+.+|+|++..+|++|+|++++.|+++++
T Consensus       332 ~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         332 RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             -CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence                          14699999999999999999999999886

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.62  E-value=1.2e-15  Score=133.44  Aligned_cols=228  Identities=16%  Similarity=0.108  Sum_probs=140.4

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC------cCCcCcccccccC
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG------LGRTGKLLAIHYE   98 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~------~~~~g~~~~~~~~   98 (266)
                      |+++|++++++.  ..++++++++.++.+|..+++.+++++|+++|++||+++++|++|..      .++.+..+.....
T Consensus       167 d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~  246 (465)
T d1ax4a_         167 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK  246 (465)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH
T ss_pred             CHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchh
Confidence            899999999763  26788889999998888889999999999999999999999999952      1111111111111


Q ss_pred             C------CCcCeeeecccccCCchhhhhheecHH--hhhccC----CCCCCCCCC-CcHHHHHHHHHHHHHHhhccHHHH
Q psy6547          99 D------VRPDIVILGKALSGGLYPISAVLADDE--VMGTLV----PGTHGSTYG-GNPLACKLAMTALDVILEENMIEN  165 (266)
Q Consensus        99 ~------~~~d~~~~sK~~~~g~~~~g~~~~~~~--~~~~~~----~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~  165 (266)
                      +      -..|+.++||..+++.++.|+++.+..  +.+...    ......++. .......++...+.....+++.++
T Consensus       247 ~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~  326 (465)
T d1ax4a_         247 EVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHY  326 (465)
T ss_dssp             HHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHH
Confidence            1      125788888888744255677766542  111111    111222222 233333333333333333567777


Q ss_pred             HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee----C--ccchHHHHHHH-HHHCCceecc----------
Q psy6547         166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV----S--AILEVYDVCIK-MKDAGLVTKP----------  228 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~--~~~~~~~~~~~-l~~~gi~~~~----------  228 (266)
                      ..++.+++.+.|++ .+.+.+.. .  .+.   .+.+....    .  .......+..+ +.+.||....          
T Consensus       327 ~~~~~~~l~~~L~~-~g~~~v~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~  399 (465)
T d1ax4a_         327 RIGQVKYLGDRLRE-AGIPIQYP-T--GGH---AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDP  399 (465)
T ss_dssp             HHHHHHHHHHHHHH-TTCCBCSS-C--CSS---EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCT
T ss_pred             HHHHHHHHHHHHHh-hcCccccC-C--Ccc---eeeeehhhhcCCCccccchhHHHHHHHHHhcCceecccccccccccc
Confidence            78888999999998 65443332 2  122   22222211    0  12234444444 4577876431          


Q ss_pred             -------CCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         229 -------ISNNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       229 -------~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                             ...+.+|++++ ...|+|++|++++.|.+++++.
T Consensus       400 ~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~  440 (465)
T d1ax4a_         400 ATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF  440 (465)
T ss_dssp             TTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             ccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                   12468999854 6779999999999999988764

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.60  E-value=1e-14  Score=123.64  Aligned_cols=217  Identities=14%  Similarity=0.104  Sum_probs=142.8

Q ss_pred             HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeee
Q psy6547          28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL  107 (266)
Q Consensus        28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~  107 (266)
                      .+..+.... .++++++.+..+.+.+|.+.    +++++.++|+++|.++++|.+++ ++.  ....++.++++..+.+.
T Consensus       132 ~~~~~~~~~-~~~~~~v~~~~~~~~tg~~~----~i~~i~~~~~~~g~~~~vDa~~~-~g~--~~~~~~~~~~d~~~~s~  203 (377)
T d1vjoa_         132 LEELRTALE-THRPAILALVHAETSTGARQ----PLEGVGELCREFGTLLLVDTVTS-LGG--VPIFLDAWGVDLAYSCS  203 (377)
T ss_dssp             HHHHHHHHH-HHCCSEEEEESEETTTTEEC----CCTTHHHHHHHHTCEEEEECTTT-TTT--SCCCTTTTTCSEEECCS
T ss_pred             chhhhhhhh-cCcceeeeeeeeeccceeee----chhhhhhhhhhccceEEEecchh-hhh--hhhcccccccceeeecc
Confidence            444444442 23577888888888899987    89999999999999999999994 321  22344444444434445


Q ss_pred             cccccCCchhhhhheecHHhhhccCCC--------------------CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHH
Q psy6547         108 GKALSGGLYPISAVLADDEVMGTLVPG--------------------THGSTYGGNPLACKLAMTALDVILE---ENMIE  164 (266)
Q Consensus       108 sK~~~~g~~~~g~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~  164 (266)
                      .|+++|+ -..|++..++...+.....                    ......+++.....+...+......   +...+
T Consensus       204 ~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~  282 (377)
T d1vjoa_         204 QKGLGCS-PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQ  282 (377)
T ss_dssp             SSTTCSC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccccCC-CEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHH
Confidence            6777765 4577777887766544321                    1112223333344444455544444   34667


Q ss_pred             HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC----CCCEEEEec-
Q psy6547         165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSP-  238 (266)
Q Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----~~~~iR~~~-  238 (266)
                      +.++...++.+.+.+ .+...+.........   ++.|.+++  +.++++++++|. ++||.+..+    .++.+|+++ 
T Consensus       283 ~~~~~~~~l~~~l~~-~~~~~~~~~~~rs~~---v~~~~~p~--~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~  356 (377)
T d1vjoa_         283 RHQKNVEYLWERLED-IGLSLHVEKEYRLPT---LTTVCIPD--GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLM  356 (377)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCBSSCGGGBCSS---EEEEECCT--TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECC
T ss_pred             HHHHHhhhhhhhhhc-cCceeecChHhcCCe---EEEEECCC--CCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecC
Confidence            777778888888877 444332221222344   56777776  678999999986 559998753    457899995 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH
Q psy6547         239 ALNITEQELREGLDIIINTIN  259 (266)
Q Consensus       239 ~~~~t~~~i~~~~~~l~~~~~  259 (266)
                      ++.+++||+++++++|+++++
T Consensus       357 g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         357 GFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHHHhC
Confidence            567799999999999998873

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.6e-14  Score=121.40  Aligned_cols=209  Identities=13%  Similarity=0.020  Sum_probs=146.4

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCc
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL  115 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~  115 (266)
                      ..+++.+.+.+..+.+|.+.    +++++.++|++++  .++++|.+++ ++  +.+..++.++++.-+.+-.|+++|. 
T Consensus       118 ~~~~~~v~~~h~eTstG~~~----~i~~i~~~~~~~~~~~l~~vDavss-~g--~~~i~~d~~~iD~~~~~sqK~l~gp-  189 (348)
T d1iuga_         118 KEGYAGLLLVHSETSTGALA----DLPALARAFKEKNPEGLVGADMVTS-LL--VGEVALEAMGVDAAASGSQKGLMCP-  189 (348)
T ss_dssp             CSSCSEEEEESEETTTTEEC----CHHHHHHHHHHHCTTCEEEEECTTT-BT--TBCCCSGGGTCSEEEEESSSTTCCC-
T ss_pred             ccCCCeeEEEecchhhhhhc----cHHHHHHHHHhhhccceeechhhhc-cc--ccccccccccCCEEEeccccceecC-
Confidence            44678888888888889887    8999999999885  7888998884 32  1344566666555555567999644 


Q ss_pred             hhhhhheecHHhhhccCCC--------------CCCCCCCCcHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHhhc
Q psy6547         116 YPISAVLADDEVMGTLVPG--------------THGSTYGGNPLACKLAMTALDVILEEN--MIENAYKMGEIFRSELSS  179 (266)
Q Consensus       116 ~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~l~~~l~~  179 (266)
                      -.+|++..+++.++.+++.              .....++++.....+...+|+.+..+.  ..+..+...+.++..++.
T Consensus       190 pG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (348)
T d1iuga_         190 PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE  269 (348)
T ss_dssp             SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence            4489999999988877642              123445666667777888888775542  111112223333333333


Q ss_pred             ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547         180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIII  255 (266)
Q Consensus       180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~  255 (266)
                       .+....+. .+ ...   ++.+.+++  +.+..++.+.|.++|+.+.++    .+..+|++.....+++|++++++.|+
T Consensus       270 -~gl~~~~~-~~-s~~---v~~~~~P~--g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~  341 (348)
T d1iuga_         270 -GGLRPVPK-RF-SPA---VAAFYLPE--GVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFR  341 (348)
T ss_dssp             -TTCEESCS-SB-CTT---CEEEECCT--TCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHH
T ss_pred             -hhhccChh-hc-CCe---EEEEECCC--CCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence             33222222 11 233   67888887  788899999999999998876    34689999887899999999999999


Q ss_pred             HHHHHHh
Q psy6547         256 NTINTMA  262 (266)
Q Consensus       256 ~~~~~~~  262 (266)
                      +++++++
T Consensus       342 ~~l~~~~  348 (348)
T d1iuga_         342 EVLEEIL  348 (348)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998863

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=4.7e-15  Score=123.01  Aligned_cols=218  Identities=11%  Similarity=0.016  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCC--
Q psy6547          26 NDVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED--   99 (266)
Q Consensus        26 ~d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~--   99 (266)
                      .++++++..+....    .+..++++...++.+....+.++++++.++|++||+++++|+++++....+.........  
T Consensus       116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~  195 (345)
T d1v72a1         116 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWK  195 (345)
T ss_dssp             CCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGG
T ss_pred             ccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhcc
Confidence            47899999986522    345556566555555555889999999999999999999999996542222222222222  


Q ss_pred             CCcCeeeecccccCCchhhhhheecHH-hhhccCC--CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy6547         100 VRPDIVILGKALSGGLYPISAVLADDE-VMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  176 (266)
Q Consensus       100 ~~~d~~~~sK~~~~g~~~~g~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  176 (266)
                      ...+..+++|..+++ ...+....... .......  .....+........+++...+..........+..++...+.+.
T Consensus       196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (345)
T d1v72a1         196 AGVDALSFGATKNGV-LAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQG  274 (345)
T ss_dssp             GTCCEEEECCGGGTC-SSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccccc-ccccccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence            245566677766654 33443333222 2111111  1122222222222222222221111123344444555556566


Q ss_pred             hhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc--CCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547         177 LSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII  254 (266)
Q Consensus       177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~--~~~~~iR~~~~~~~t~~~i~~~~~~l  254 (266)
                      +.+ ++  .+....+..++   ++++.++.       ++++.|+++|+.+.+  .+.+.+||+++..+|+||||++++.|
T Consensus       275 l~~-~~--g~~~~~p~~~n---iv~~~~~~-------~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~l  341 (345)
T d1v72a1         275 LEG-LG--GVEVLGGTEAN---ILFCRLDS-------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV  341 (345)
T ss_dssp             HTT-CT--TEEEESCCCSS---EEEEEECH-------HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             HHh-cC--CcEeccCCCcc---EEEEEcCH-------HHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            665 32  22210112233   77777643       467889999998764  35789999999999999999999999


Q ss_pred             HHH
Q psy6547         255 INT  257 (266)
Q Consensus       255 ~~~  257 (266)
                      +++
T Consensus       342 r~a  344 (345)
T d1v72a1         342 RLA  344 (345)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            874

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.3e-14  Score=125.92  Aligned_cols=228  Identities=9%  Similarity=0.058  Sum_probs=139.9

Q ss_pred             CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc-Cc--ccccccCCCC
Q psy6547          27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GK--LLAIHYEDVR  101 (266)
Q Consensus        27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~-g~--~~~~~~~~~~  101 (266)
                      |+++|++++++.  +++++|+++.+.+++|.+.    ++++|.++|++||+++++|++|.+.... ..  .+.....+++
T Consensus       179 d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~----~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd  254 (445)
T d3bc8a1         179 DLKAVEAKIQELGPEHILCLHSTTACFAPRVPD----RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID  254 (445)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC----CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh----hHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcc
Confidence            899999999762  3688888888887788875    8999999999999999999999543111 11  1111112233


Q ss_pred             cCeeeecccccCCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHh
Q psy6547         102 PDIVILGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL  177 (266)
Q Consensus       102 ~d~~~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l  177 (266)
                      .-..+..|.++++ ...|+++.+ ....+.+..........   .....+..++..+..   ....++..++.+++.++|
T Consensus       255 ~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L  330 (445)
T d3bc8a1         255 AFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASA---SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL  330 (445)
T ss_dssp             EEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccC---cchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence            3333466988866 556666664 44444443211222221   122223333333333   345566667777888888


Q ss_pred             hcccccCCCcc-cEEecCccceeeEEEEeeC---ccchHHHHHHHHHHCCceecc----C--------------------
Q psy6547         178 SSPANKSKASF-KLSSGGLKKSINTLILSVS---AILEVYDVCIKMKDAGLVTKP----I--------------------  229 (266)
Q Consensus       178 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~----~--------------------  229 (266)
                      ++......... .......   ...+.+...   ...+..++...|.+.||....    .                    
T Consensus       331 ~~l~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~  407 (445)
T d3bc8a1         331 KKLAEAHNERLLQTPHNPI---SLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY  407 (445)
T ss_dssp             HHHHHHTTCCBCCCTTCSS---EEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCC
T ss_pred             HHHHhhcCceeecCCCCCc---ceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccC
Confidence            77222111111 0112222   333333221   134677888889998874221    0                    


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK  265 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  265 (266)
                      ...++|++++..+|++|||+++++|+++++++.+++
T Consensus       408 ~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~  443 (445)
T d3bc8a1         408 PCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ  443 (445)
T ss_dssp             SSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            125699999999999999999999999999987665

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.58  E-value=3.8e-14  Score=120.57  Aligned_cols=218  Identities=15%  Similarity=0.104  Sum_probs=143.9

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      +.++.+..... .+++++.+..+.+.+|.+.    +++++.++|+++|+++++|.+++ ++  +.+..++.+  ..|+++
T Consensus       130 ~~~~~~~~~~~-~~~~~v~~~~~~t~tG~~~----~~~~i~~~~~~~~~~~~vD~~ss-~g--~~pid~~~~--~~d~~~  199 (388)
T d2ch1a1         130 SLETLARAIEL-HQPKCLFLTHGDSSSGLLQ----PLEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMDKW--EIDAVY  199 (388)
T ss_dssp             CHHHHHHHHHH-HCCSEEEEESEETTTTEEC----CCTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTTTT--TCCEEE
T ss_pred             chhhhhhhhcc-CCcceeeeeeccccccccc----chhhhcchhccccceeeeeeeec-cc--ccccchhcc--CceEEE
Confidence            45556665533 3678888988999899987    88999999999999999999995 21  233334444  455555


Q ss_pred             ec--ccccCCchhhhhheecHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547         107 LG--KALSGGLYPISAVLADDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILEEN  161 (266)
Q Consensus       107 ~s--K~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~  161 (266)
                      +|  |++++. -.+|++..+++..+.....                       ......+.+.....++..+++.+..++
T Consensus       200 ~s~~K~~~gp-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~  278 (388)
T d2ch1a1         200 TGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEG  278 (388)
T ss_dssp             CCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             EccccccCCC-CeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhh
Confidence            44  777754 4577788887666543211                       112334556666677777777665543


Q ss_pred             ---HHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC----CCC
Q psy6547         162 ---MIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI----SNN  232 (266)
Q Consensus       162 ---~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~  232 (266)
                         ...+.+......+..+.. .... ...........   ++.|.+++  +.++.++.+.|+++ ||.++++    .++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~---v~~~~~p~--g~~~~~l~~~l~~~~gI~v~~G~~~~~~~  352 (388)
T d2ch1a1         279 LENQIKRRIECAQILYEGLGK-MGLDIFVKDPRHRLPT---VTGIMIPK--GVDWWKVSQYAMNNFSLEVQGGLGPTFGK  352 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTT---EEEEECCT--TCCHHHHHHHHHHHHCBCCBCCCGGGTTT
T ss_pred             hHHHHHHHHHHHHHHHhhhhh-cccccccCCHHHhCCe---EEEEECCC--CCCHHHHHHHHhhcCCEEEeCCCccccCC
Confidence               333333344444444444 3221 22221222344   67888887  77889999998754 9998875    356


Q ss_pred             EEEEe-ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLS-PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       233 ~iR~~-~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+|++ ++..+|+|+++++++.|+++++.+
T Consensus       353 ~~RIs~~g~~~t~edI~~ll~alke~L~~~  382 (388)
T d2ch1a1         353 AWRVGIMGECSTVQKIQFYLYGFKESLKAT  382 (388)
T ss_dssp             EEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence            89999 456779999999999999999875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=4.4e-14  Score=120.02  Aligned_cols=217  Identities=17%  Similarity=0.139  Sum_probs=148.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~~~~~~g~~~~~~~~~~~~d~  104 (266)
                      +.+.+++.+.+. +++++++..+.+.+|...    +++.+.++|++++  +++++|.+++ +|  ..+..++.++++.-+
T Consensus       123 ~~~~~~~~~~~~-~~~~v~~~~~~~~tg~~~----~~~~~~~~~~~~~~~~~~~vDa~qs-~g--~~pid~~~~giD~~~  194 (382)
T d2bkwa1         123 PLELITEKLSQN-SYGAVTVTHVDTSTAVLS----DLKAISQAIKQTSPETFFVVDAVCS-IG--CEEFEFDEWGVDFAL  194 (382)
T ss_dssp             CHHHHHHHHHHS-CCSEEEEESEETTTTEEC----CHHHHHHHHHHHCTTSEEEEECTTT-TT--TSCCCTTTTTCSEEE
T ss_pred             chhHHHHHhhhc-cchheeeeeccccccccc----cchhhhhhccccccceeeeeecccc-cc--cccccccccCeeEEe
Confidence            577788777543 678899999988899987    8888988887765  9999999995 32  133445555555444


Q ss_pred             eeecccccCCchhhhhheecHHhhhccCCC--------------------------CCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547         105 VILGKALSGGLYPISAVLADDEVMGTLVPG--------------------------THGSTYGGNPLACKLAMTALDVIL  158 (266)
Q Consensus       105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~a~~~~l~~~~  158 (266)
                      .+-.|+++|+ ..+|++..++++.+.+...                          .....++++.....+...+|+.+.
T Consensus       195 ~s~~K~l~gP-~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~  273 (382)
T d2bkwa1         195 TASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  273 (382)
T ss_dssp             EESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             ecccccCcCC-CchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence            5566999755 5589999998887655321                          112345677777888888999887


Q ss_pred             hcc---HHHHHHHHHHHHHHHhhcccccCCC---cccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---
Q psy6547         159 EEN---MIENAYKMGEIFRSELSSPANKSKA---SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---  229 (266)
Q Consensus       159 ~~~---~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---  229 (266)
                      .++   ..++.+++.+++++.+.+..+...+   +... ....   ++.+..++     +.++.+.|.++||.+..+   
T Consensus       274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-~s~~---v~~~~~~~-----~~~~~~~L~~~gi~i~~G~~~  344 (382)
T d2bkwa1         274 EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNM-SAHG---LTAVYVAD-----PPDVIAFLKSHGVVIAGGIHK  344 (382)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTT-BCSS---CEEEECSC-----HHHHHHHHHHTTEECBCCCCT
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhc-cCCc---EEEEcCCC-----HHHHHHHHHHCCeEEECCCCh
Confidence            654   4556667788888887762322111   1101 1122   45566554     678899999999999865   


Q ss_pred             --CCCEEEEe-ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         230 --SNNIIRLS-PALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       230 --~~~~iR~~-~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                        +.+.+|++ .++..++++++.+++.|+.....+
T Consensus       345 ~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L  379 (382)
T d2bkwa1         345 DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL  379 (382)
T ss_dssp             TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred             hhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence              24679999 456667888888888887655443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7.2e-14  Score=122.00  Aligned_cols=230  Identities=12%  Similarity=0.077  Sum_probs=139.3

Q ss_pred             cCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC---cCCcCccccccc-
Q psy6547          24 PYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG---LGRTGKLLAIHY-   97 (266)
Q Consensus        24 ~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~---~~~~g~~~~~~~-   97 (266)
                      .+.|+++|++.++..  +.+++++++++++.+|+.+++.+++++|+++|++||+++++|+++..   +...+....... 
T Consensus       165 ~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~  244 (467)
T d2v1pa1         165 GNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW  244 (467)
T ss_dssp             TCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS
T ss_pred             cCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCC
Confidence            345899999999753  26889999999998888889999999999999999999999999832   111111111111 


Q ss_pred             --------CCCCcCeeeecccccCCchhhhhheecHHhhhc-cC-------CCCCCCCCCCcHHH-HHHHHHHHHHHhhc
Q psy6547          98 --------EDVRPDIVILGKALSGGLYPISAVLADDEVMGT-LV-------PGTHGSTYGGNPLA-CKLAMTALDVILEE  160 (266)
Q Consensus        98 --------~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~-~~a~~~~l~~~~~~  160 (266)
                              ..-..|++++|+..+.+....|+++.+.+.... ..       ......++...... +++....+.....+
T Consensus       245 ~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  324 (467)
T d2v1pa1         245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL  324 (467)
T ss_dssp             CHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhH
Confidence                    122467888775544331234555554432211 11       11233343334333 33334444444446


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe----eC--ccchHHHHHHH-HHHCCceec------
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS----VS--AILEVYDVCIK-MKDAGLVTK------  227 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~--~~~~~~~~~~~-l~~~gi~~~------  227 (266)
                      ++.++..++.++++++|.+ .+..   . ....+.   ...+...    ..  .......+..+ +.+.||...      
T Consensus       325 ~~~~~~~~~~~~l~~~L~~-~~~~---v-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~  396 (467)
T d2v1pa1         325 DWLAYRIAQVQYLVDGLEE-IGVV---C-QQAGGH---AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFL  396 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCC---E-EEECSS---CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCc---c-cCCCcc---ceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccc
Confidence            7888888899999999988 4321   1 122222   2222211    10  02233444444 457777432      


Q ss_pred             -----------cCCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 -----------PISNNIIRLSPA-LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 -----------~~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                                 +...+.+|++++ ...|+++||++++.|+++.++.
T Consensus       397 ~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~  442 (467)
T d2v1pa1         397 LGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             HCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             cccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                       223578999865 5679999999999999998754

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.47  E-value=4.1e-13  Score=116.91  Aligned_cols=215  Identities=10%  Similarity=-0.036  Sum_probs=131.3

Q ss_pred             CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc--cccCC------CCcCeee--ecc
Q psy6547          40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA--IHYED------VRPDIVI--LGK  109 (266)
Q Consensus        40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~--~~~~~------~~~d~~~--~sK  109 (266)
                      ++..+++...++..|.+.    ++++|+++|++||+++++|++|.........+.  ....+      ...|+++  ++|
T Consensus       173 ~~~~v~v~~~~~~~G~~~----dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK  248 (462)
T d1c4ka2         173 RPFRLAVIQLGTYDGTIY----NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHK  248 (462)
T ss_dssp             CCBSEEEEESBCTTSEEE----CHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHH
T ss_pred             CCceeEEEEeeeeccchh----hHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCc
Confidence            455556666667788887    999999999999999999999953211111111  11111      1236665  669


Q ss_pred             cccCCchhhhhhe-ecHHhhhccCCC----------CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHH
Q psy6547         110 ALSGGLYPISAVL-ADDEVMGTLVPG----------THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRS  175 (266)
Q Consensus       110 ~~~~g~~~~g~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~  175 (266)
                      ++++.  ..|.++ .+..........          ....+.+++...+++...+...+..   +++.++..++..++++
T Consensus       249 ~lg~~--~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~  326 (462)
T d1c4ka2         249 QQAGF--SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARK  326 (462)
T ss_dssp             HSSCC--TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc--cceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99853  234444 343333222111          1234455666666666666666543   3467778888888888


Q ss_pred             HhhcccccCCCc---ccEE---------------------e--------cCcccee-------eEEEEee---------C
Q psy6547         176 ELSSPANKSKAS---FKLS---------------------S--------GGLKKSI-------NTLILSV---------S  207 (266)
Q Consensus       176 ~l~~~~~~~~~~---~~~~---------------------~--------~g~~~~~-------~~~~~~~---------~  207 (266)
                      ++.+ +......   ....                     .        .+.....       +.+..+.         .
T Consensus       327 ~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~  405 (462)
T d1c4ka2         327 KLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED  405 (462)
T ss_dssp             HHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS
T ss_pred             HHHH-hhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhh
Confidence            8876 3321000   0000                     0        0000000       2222211         0


Q ss_pred             ccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         208 AILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       208 ~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+..+..+.+.|.++||.+...+.+.+|++++..+|++++|++++.|++..+.+
T Consensus       406 ~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~  459 (462)
T d1c4ka2         406 FGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI  459 (462)
T ss_dssp             SCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            134578899999999999887788999999999999999999999999987654

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.2e-12  Score=111.68  Aligned_cols=225  Identities=9%  Similarity=0.003  Sum_probs=145.6

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH------HHhcCCEEEEeccccCcCC-c---Ccccccc
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL------CSQYNVLFIADEVQTGLGR-T---GKLLAIH   96 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l------~~~~g~~li~De~~~~~~~-~---g~~~~~~   96 (266)
                      |+++|++++  ++++++|++....+.+|.+-    ++++|.++      |+++|+++.+|.++.|+.- .   ...+.+.
T Consensus       188 d~~~L~~~i--~~~t~~Vv~t~gtt~tG~~d----pv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~  261 (450)
T d1pmma_         188 DPKRMIEAC--DENTIGVVPTFGVTYTGNYE----FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR  261 (450)
T ss_dssp             CHHHHHHHC--CTTEEEEECBBSCTTTCBBC----CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT
T ss_pred             cHHHHHHHh--hhCceEEEeeeeeccCCCcc----ccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhc
Confidence            799999999  55788888888888788874    55555555      5778999999999976421 0   1111111


Q ss_pred             cCCCCcCeee--ecccccCCchhhhhheecHHh-hhccCC----C------CCCCCCCCcHHHHHHHHHHHHHHhhc---
Q psy6547          97 YEDVRPDIVI--LGKALSGGLYPISAVLADDEV-MGTLVP----G------THGSTYGGNPLACKLAMTALDVILEE---  160 (266)
Q Consensus        97 ~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~-~~~~~~----~------~~~~~~~~~~~~~~a~~~~l~~~~~~---  160 (266)
                      ..  ..|.++  ..|++.+. +..|+++.+.+. ......    +      .....++-+.....+....+..+..+   
T Consensus       262 ~~--~aDSi~~s~HK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~  338 (450)
T d1pmma_         262 LP--RVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYT  338 (450)
T ss_dssp             ST--TEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--ceeEeecChhhccCCC-CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHH
Confidence            11  345555  55988876 778888876542 211110    0      01111122223344455566666554   


Q ss_pred             cHHHHHHHHHHHHHHHhhccccc-CCCcccEEec-CccceeeEEEEeeCc--cchHHHHHHHHHHCCceec----cC---
Q psy6547         161 NMIENAYKMGEIFRSELSSPANK-SKASFKLSSG-GLKKSINTLILSVSA--ILEVYDVCIKMKDAGLVTK----PI---  229 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~-g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~----~~---  229 (266)
                      +..++..++++++.++|++ .+. ..+.   .+. ....|.+.|.+.+..  +.+..++..+|.++|+.+.    |.   
T Consensus       339 ~~~~~~~~la~~l~~~L~~-~~~~el~~---~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~  414 (450)
T d1pmma_         339 KVQNASYQVAAYLADEIAK-LGPYEFIC---TGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEAT  414 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TSCEEEEE---ECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCT
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCeEEEe---CCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcC
Confidence            4677778899999999988 543 1111   111 112357888876532  4567889999999998763    22   


Q ss_pred             CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547         230 SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  264 (266)
Q Consensus       230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~  264 (266)
                      ....+|+.+....|++++|++++.|+++++.+..+
T Consensus       415 ~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~  449 (450)
T d1pmma_         415 DIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH  449 (450)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            33579999999999999999999999999887543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=1.8e-13  Score=115.27  Aligned_cols=228  Identities=11%  Similarity=0.119  Sum_probs=140.8

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG   90 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g   90 (266)
                      +.+..++..+.+++..+++++++++  ++++++|++|.+.|+...+.    ++++|+++|+++|+++|+|+++.... .-
T Consensus       106 ~~~~~~gi~~~~~d~~~~~~~~~ai--~~~t~li~~EtpsNP~l~v~----Di~~i~~iA~~~g~~~vVDnT~atP~-~~  178 (380)
T d1ibja_         106 QVVPRSGVVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPRQQIS----DIRKISEMAHAQGALVLVDNSIMSPV-LS  178 (380)
T ss_dssp             HTSGGGTCEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTTCCCC----CHHHHHHHHHTTTCEEEEECTTTCTT-TC
T ss_pred             hhhccccccccccCcchHHHHHHHh--ccCccEEEeccccccccccc----cHHHHHHHHHHcCCeEEeeccccccc-cc
Confidence            3455678888899999999999999  66899999999999998888    99999999999999999999994210 01


Q ss_pred             cccccccCCCCcCeeeecccccCCc-hhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547          91 KLLAIHYEDVRPDIVILGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK  168 (266)
Q Consensus        91 ~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  168 (266)
                      .+  + .+|.+..+.+.+|.++|.- .-.|.++.+ +.+.+.+.......-...+|..+......++-+.  -..++..+
T Consensus       179 ~P--l-~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--lRm~~~~~  253 (380)
T d1ibja_         179 RP--L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQE  253 (380)
T ss_dssp             CG--G-GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred             cc--c-ccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh--hhHHHHHH
Confidence            11  1 2455666666899999531 223454444 5555555432222222345666655555554321  22344445


Q ss_pred             HHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCce------
Q psy6547         169 MGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV------  225 (266)
Q Consensus       169 ~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~------  225 (266)
                      ++..+.+.|++ -+      .+++..         ...+.|.   ++.|.+..  ...+..|++.|+  ..+.-      
T Consensus       254 nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~---~~s~~~~~--~~~a~~f~d~l~l~~~a~SlG~~~S  327 (380)
T d1ibja_         254 NARKIAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGS---VFSFITGS--VALSKHLVETTKYFSIAVSFGSVKS  327 (380)
T ss_dssp             HHHHHHHHHHT-CTTCCEEECTTSTTSTTHHHHTTTCSCCCS---EEEEECSC--HHHHHHHHHHCSSSEECSCCCSSSC
T ss_pred             HHHHHHHHHHh-CCCeeEEeccccccCccccccccccccccc---cccccccH--HHHHHHHHHhCCcCeEeeccCCccc
Confidence            55666666664 21      122211         1234455   77777655  445666766664  21111      


Q ss_pred             --eccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         226 --TKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       226 --~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                        .-|.                 ..+.||+|..+.    +.+.+++.|+++++.
T Consensus       328 Li~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE----~~eDLi~Dl~qAl~~  377 (380)
T d1ibja_         328 LISMPCFMSHASIPAEVREARGLTEDLVRISAGIE----DVDDLISDLDIAFKT  377 (380)
T ss_dssp             EEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSS----CHHHHHHHHHHHHHS
T ss_pred             cccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence              1110                 247799996654    556677888877764

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=7.7e-13  Score=111.67  Aligned_cols=227  Identities=14%  Similarity=0.117  Sum_probs=139.3

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~   91 (266)
                      .+..++.++.+++..|++++++++  .+++++|++|.+.|++..+.    ++++|+++|+++|+++++|.++..      
T Consensus       118 ~~~~~Gi~~~~~d~~d~~~~~~ai--~~~t~lv~~Esp~NP~l~v~----Di~~i~~ia~~~g~~~vvDnT~at------  185 (392)
T d1gc0a_         118 GIGEFGVKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMA----DIAGVAKIARKHGATVVVDNTYCT------  185 (392)
T ss_dssp             TGGGGTCEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHGGGTCEEEEECTTTH------
T ss_pred             hhccCCcccccCCccCHHHHHHhC--CCCCeEEEecccccceeeec----chHHHHHHHHhcCCEEEEecCccC------
Confidence            345678889999999999999999  56899999999999998888    999999999999999999999941      


Q ss_pred             ccccc--cCCCCcCeeeecccccCCc-hhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          92 LLAIH--YEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        92 ~~~~~--~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      +..+.  .+|.+..+.+.+|.++|.- .-.|.++++.+.+...+  ......-...+|..+......|+-+.  -..++.
T Consensus       186 P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~--lRm~~~  263 (392)
T d1gc0a_         186 PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--LRMDRH  263 (392)
T ss_dssp             HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHHH
T ss_pred             ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH--HHHHHH
Confidence            11122  2355555666889998421 33566777877765442  11111223346666666665554332  123334


Q ss_pred             HHHHHHHHHHhhcc-----cccCCC---------cccEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCcee----
Q psy6547         167 YKMGEIFRSELSSP-----ANKSKA---------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLVT----  226 (266)
Q Consensus       167 ~~~~~~l~~~l~~~-----~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~----  226 (266)
                      .+++..+.+.|++-     ...+.+         .....+.|.   ++.|++... ......|++.|.  ..+.-.    
T Consensus       264 ~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg---~~sf~l~~~-~~~~~~f~~~L~l~~~a~SlGg~e  339 (392)
T d1gc0a_         264 CANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGG---MIAFELKGG-IGAGRRFMNALQLFSRAVSLGDAE  339 (392)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEEEC----------------CCTT---EEEEEETTH-HHHHHHHHHHCSSSEECSCCSCSS
T ss_pred             HHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCc---EEEEEEeCC-HHHHHHHHHhCCcceEeeccCCcC
Confidence            44555555555540     111111         111234466   899998651 123456666664  111110    


Q ss_pred             ----cc-----------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 ----KP-----------------ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ----~~-----------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          -|                 ..++.||+|+.+.    +.+.+++.|+++++.
T Consensus       340 SLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlE----d~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         340 SLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLE----DIDDLLADVQQALKA  390 (392)
T ss_dssp             CEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHHHH
T ss_pred             hhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeC----CHHHHHHHHHHHHHh
Confidence                01                 0347899996654    455666777766653

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=2.1e-11  Score=106.03  Aligned_cols=231  Identities=12%  Similarity=0.056  Sum_probs=142.7

Q ss_pred             CceeecCC-----CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547          19 GYNIIPYN-----DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        19 ~v~~~~~~-----d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~   89 (266)
                      +++.+|-+     |+++|++.|+++    ..+.+|+.+-..+.+|.+-    ++++|+++|++||+++.+|.+|.|+...
T Consensus       205 ~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iD----pl~~I~~i~~~~~~wlHVDAA~Gg~~~~  280 (476)
T d1js3a_         205 KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD----NLLEVGPICHEEDIWLHVDAAYAGSAFI  280 (476)
T ss_dssp             EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHHTTCEEEEECTTGGGGGG
T ss_pred             eEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeec----cHHHHHHHHHhcCcEEEEecccchhhhh
Confidence            44555533     799999999652    2355666666666677774    9999999999999999999999775322


Q ss_pred             CcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-hh-hccCCC-------C---C------CCCC-CCcHHHH
Q psy6547          90 GKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-VM-GTLVPG-------T---H------GSTY-GGNPLAC  147 (266)
Q Consensus        90 g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~-~~~~~~-------~---~------~~~~-~~~~~~~  147 (266)
                      .........++ ..|-++  ..|++... +..|+++.+.. .. ..+...       .   .      ..+. .+-+...
T Consensus       281 ~~~~~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~a  359 (476)
T d1js3a_         281 CPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRS  359 (476)
T ss_dssp             STTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTH
T ss_pred             hcchhhhhcCCcccceeeecCccccccC-CcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHH
Confidence            22111112233 355555  67999876 67777777542 22 222110       0   0      0011 1112223


Q ss_pred             HHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547         148 KLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG  223 (266)
Q Consensus       148 ~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  223 (266)
                      ..+..+++.+..+   ++.++..++++++.+++++ .+. ..+.   +..-+   ++.|.+...+. -.+++.++|.+.|
T Consensus       360 l~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~-~~~fel~~---~p~l~---iV~Fr~~~~d~-~n~~l~~~l~~~G  431 (476)
T d1js3a_         360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRFEVCA---EVTLG---LVCFRLKGSDG-LNEALLERINSAR  431 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEECS---CCCSS---EEEEEESSCHH-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEC---CCceE---EEEEEccCChH-HHHHHHHHHHhcC
Confidence            3445566666654   4566667788888888887 432 1111   12222   67777754222 2467888888877


Q ss_pred             -ceecc---CCCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         224 -LVTKP---ISNNIIRLSPA-LNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       224 -i~~~~---~~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                       +++.+   .+..++|+++. ...+++|++.+++.|++..+++.
T Consensus       432 ~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         432 KIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             SCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence             44443   24458999865 56789999999999999988864

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.37  E-value=3.6e-12  Score=107.55  Aligned_cols=226  Identities=12%  Similarity=0.074  Sum_probs=138.7

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +..++.++.+++..|++++++++  .+++++|++|.+.|+...+.    ++++|+++|+++|+++++|.++..-    ..
T Consensus       123 l~~~Gi~~~~vd~~d~~~~~~~i--~~~Tklv~~Esp~NP~l~v~----Di~~i~~iA~~~gi~~vvDnT~atP----~~  192 (397)
T d1y4ia1         123 MPKFGINVRFVDAGKPEEIRAAM--RPETKVVYIETPANPTLSLV----DIETVAGIAHQQGALLVVDNTFMSP----YC  192 (397)
T ss_dssp             HHHTTCEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTCT----TT
T ss_pred             cCCCceEeeccCCCCHHHHHHhc--CCCCcEEEecCCcccceeec----ccHHHHHHhhcCCceEEecCcccCc----cc
Confidence            45568899999999999999999  56899999999999988887    9999999999999999999998421    11


Q ss_pred             cccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          93 LAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        93 ~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      +---.+|.+..+.+.+|.++|.- .-.|.++++.+.+...+  ......-...+|..+..+...|+-+.  -..++-.++
T Consensus       193 ~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~--lRm~~~~~n  270 (397)
T d1y4ia1         193 QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCEN  270 (397)
T ss_dssp             CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred             CcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHH--HHHHHHHHH
Confidence            11112355555666889999431 23466777777664432  11112223356666655555554321  123334445


Q ss_pred             HHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccc-hHHHHHHHHHHCCc---------
Q psy6547         170 GEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDAGL---------  224 (266)
Q Consensus       170 ~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi---------  224 (266)
                      +..+.+.|++ -+      .+.++.         ...+.|.   ++.|.+..  +. ...+|++.|.=-.+         
T Consensus       271 A~~lA~~L~~-hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg---~~sf~~~~--~~~~~~~f~~~L~l~~~a~SlGg~eS  344 (397)
T d1y4ia1         271 ALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGG---IISFEIAG--GLEAGRRMINSVELCLLAVSLGDTET  344 (397)
T ss_dssp             HHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHCSSCCS---EEEEEETT--HHHHHHHHHHTCSSSEECSCCSCSSC
T ss_pred             HHHHHHHHHh-CCCcCeEeCCCCCCCccccccccccCCCCe---EEEEEecC--CHHHHHHHHHcCCccceeeccCcccc
Confidence            5566666664 21      222221         1223466   89998765  22 23455555431111         


Q ss_pred             -eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         225 -VTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       225 -~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                       +..|.                 ..+.+|++..+.    |.+.+++.|++++++
T Consensus       345 Li~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlE----d~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         345 LIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE----DPEDIINDLEHAIRK  394 (397)
T ss_dssp             EEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHHHH
T ss_pred             eeeCccccccccCCHHHHHHcCCCcCEEEEEeccC----CHHHHHHHHHHHHHH
Confidence             11111                 347899996654    455566777766654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.36  E-value=5.5e-13  Score=109.27  Aligned_cols=206  Identities=14%  Similarity=0.105  Sum_probs=115.8

Q ss_pred             CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547          40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRPDIVILGKALSGGLYP  117 (266)
Q Consensus        40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~  117 (266)
                      ....+++....+++|.+ ...+.+..+...|+++|.++++|+++.+.  ...+.............+..+++..+.+...
T Consensus       130 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (340)
T d1svva_         130 VIPKLVYISNTTEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG  208 (340)
T ss_dssp             CEEEEEEEESSCTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC
T ss_pred             Ccceeeeeccccccccc-ccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccc
Confidence            34555555555555555 67889999999999999999999999542  1111111111111123444555555533122


Q ss_pred             hhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCc
Q psy6547         118 ISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL  195 (266)
Q Consensus       118 ~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~  195 (266)
                      .++..............  ....+........+++...++........++...++.++++.++. .+...+.   +..++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~---p~~~~  284 (340)
T d1svva_         209 EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA-CGIRLAW---PSASN  284 (340)
T ss_dssp             EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCBSS---CCSSS
T ss_pred             ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc-CCCeeec---CCCce
Confidence            23333332222211111  123333333334444443333322344677777788888888887 5543221   23344


Q ss_pred             cceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547         196 KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  256 (266)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~  256 (266)
                         ++++.++.   ....++.+++...++.+.+.+.+++|++++..+|++|||+++++|++
T Consensus       285 ---~v~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         285 ---QLFPILEN---TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             ---EECBEEEH---HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ---EEEEeCCH---HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence               77776654   22333333333335555666788999999999999999999999986

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.36  E-value=8.8e-12  Score=108.03  Aligned_cols=226  Identities=14%  Similarity=0.052  Sum_probs=137.1

Q ss_pred             CCHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcC---cccc-cc-
Q psy6547          26 NDVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTG---KLLA-IH-   96 (266)
Q Consensus        26 ~d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g---~~~~-~~-   96 (266)
                      .|+++|++.|+++.  .+++++++..+|..|..+++.+++++|.++|++||+++++|+++..-  ...+   ..+. .. 
T Consensus       158 ~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i  237 (456)
T d1c7ga_         158 IDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSI  237 (456)
T ss_dssp             BCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCH
T ss_pred             CCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCCh
Confidence            38999999997632  67888899888888888899999999999999999999999998310  0000   0000 00 


Q ss_pred             -----cCCCCcCeee--ecccccCCchhhhhheec-HHhhhccCCC----CCCCCC-CCcHHHHHHHHHHHHHHhhccHH
Q psy6547          97 -----YEDVRPDIVI--LGKALSGGLYPISAVLAD-DEVMGTLVPG----THGSTY-GGNPLACKLAMTALDVILEENMI  163 (266)
Q Consensus        97 -----~~~~~~d~~~--~sK~~~~g~~~~g~~~~~-~~~~~~~~~~----~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~  163 (266)
                           ...-..|+++  .+|.++++  ..|+++.+ +.+.+.++..    ....++ ..+...+.+....+.....+++.
T Consensus       238 ~~i~~~~~~~ad~~s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l  315 (456)
T d1c7ga_         238 KDIVHEMFSYADGCTMSGKKDCLVN--IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI  315 (456)
T ss_dssp             HHHHHHHHTTCSEEEEETTTTTCCS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhhccccccccccEEEecccccccc--ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHH
Confidence                 0001246655  55777644  24556554 4555544321    112222 22333334444444444445566


Q ss_pred             HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHH-HHCCceeccC-------
Q psy6547         164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKM-KDAGLVTKPI-------  229 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l-~~~gi~~~~~-------  229 (266)
                      ++..++.+++.++|.+ .+.+.+..   ..+.   .+.++...      .......++..++ .+.||...+.       
T Consensus       316 ~~r~~~~~~L~e~L~~-~g~~vv~p---~g~~---~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~  388 (456)
T d1c7ga_         316 EHRVKQVRYLGDKLRE-AGVPIVEP---TGGH---AVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGR  388 (456)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCBCSS---CCSS---EEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB
T ss_pred             HHHHHHHHHHHHHHHh-ccCCcccC---CCCc---ceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCcccccc
Confidence            7777788899999988 55433321   2333   44444221      0123455555555 4778854321       


Q ss_pred             ----------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ----------SNNIIRLSPA-LNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ----------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                ..+.+|++++ ...|+++||.+++.|+++.++
T Consensus       389 ~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         389 SKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence                      2256999976 456999999999999998764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.31  E-value=7.2e-12  Score=105.84  Aligned_cols=227  Identities=15%  Similarity=0.106  Sum_probs=137.4

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      +..++..+.+++..+.++.++.+. .+++++|++|.+.|++-.+.    ++++|+++|+++|+++|+|++...      +
T Consensus       127 ~~~~gi~~~~~~~~~~~~~~~~~~-~~~t~~v~~EspsNP~l~v~----Di~~ia~ia~~~g~~~vVDnT~at------P  195 (398)
T d1qgna_         127 LPKMGITATVIDPADVGALELALN-QKKVNLFFTESPTNPFLRCV----DIELVSKLCHEKGALVCIDGTFAT------P  195 (398)
T ss_dssp             GGGGTCEEEEECSSCHHHHHHHHH-HSCEEEEEEESSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTC------T
T ss_pred             ccccccccccccccchhhhhhhhc-cccceEEEccCccccccccc----hHHHHHHHHhhcCCEEEecceeec------c
Confidence            455677788888777776665543 45899999999999998887    999999999999999999999842      1


Q ss_pred             ccccc--CCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          93 LAIHY--EDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        93 ~~~~~--~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      ..+..  +|.+..+.+.+|.++|.- .-.|.+..+++..+.+.......-...+|..+..+...|+-+  +-..++..++
T Consensus       196 ~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL--~lRm~~~~~n  273 (398)
T d1qgna_         196 LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL--HLRVQQQNST  273 (398)
T ss_dssp             TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHHHHHHHHH
T ss_pred             ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHH--HHHHHHHHHH
Confidence            22222  344444555889998431 234566777777666553322222345666666555555432  1123444445


Q ss_pred             HHHHHHHhhcc-----cccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCcee-------
Q psy6547         170 GEIFRSELSSP-----ANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLVT-------  226 (266)
Q Consensus       170 ~~~l~~~l~~~-----~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~-------  226 (266)
                      +..+.+.|++-     ...+.++.         ...+.|.   ++.|.+... ...+.+|++.|+  ..+.-.       
T Consensus       274 A~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~---~~sf~~~g~-~~~a~~f~~~L~l~~~a~SlGg~~SLi  349 (398)
T d1qgna_         274 ALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG---AVSFEVDGD-LLTTAKFVDALKIPYIAPSFGGCESIV  349 (398)
T ss_dssp             HHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCS---EEEEEESSC-HHHHHHHHHHCSSSEECSCCCSSSCEE
T ss_pred             HHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCc---eeeeeecCC-HHHHHHHHHcCCcceeeeCCCCCccee
Confidence            55555666540     11222221         1234566   888887541 234566777664  222211       


Q ss_pred             c-c-----------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 K-P-----------------ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ~-~-----------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      . |                 ..++.||+|..+.    +.+.+++.|+++++.
T Consensus       350 ~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlE----d~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         350 DQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVE----DFDDLKADILQALDS  397 (398)
T ss_dssp             ECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSS----CHHHHHHHHHHHHHH
T ss_pred             eCcchhccccCCHHHHHhcCCCcCEEEEEeccC----CHHHHHHHHHHHHhc
Confidence            0 0                 0247899996654    455667788777765

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.6e-11  Score=103.23  Aligned_cols=227  Identities=15%  Similarity=0.066  Sum_probs=136.6

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK   91 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~   91 (266)
                      ...++..+.+++..|.++++..+  .+++++|++|++.|++-.+.    ++++|+++|+++|+++|+|++.. .+.  -.
T Consensus       110 ~~~~g~~~~~~d~~d~~~~~~~~--~~~t~~v~~EspsNP~l~v~----Di~~i~~ia~~~g~~~vVDNT~atP~~--~~  181 (384)
T d1cs1a_         110 AKRGCYRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVV----DIAKICHLAREVGAVSVVDNTFLSPAL--QN  181 (384)
T ss_dssp             HTTTSCEEEEECTTCHHHHHHHH--HTCCSEEEEECSCTTTCCCC----CHHHHHHHHHHTTCEEEEECTTTCTTT--CC
T ss_pred             hcccccccccccCCCHHHHHhhc--cccccEEEEeccccccceec----cHHHHhhhhhhcCcEEEEeccccCccc--cc
Confidence            34557788888889999999999  45789999999999998887    99999999999999999999993 221  11


Q ss_pred             ccccccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547          92 LLAIHYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM  169 (266)
Q Consensus        92 ~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  169 (266)
                      +   -.+|.+..+.+.+|.++|.- .-.|.+++ ++.+.+.+...........+|..+..+...|+-+  .-..++..++
T Consensus       182 P---l~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL--~lRm~~~~~n  256 (384)
T d1cs1a_         182 P---LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRMELAQRN  256 (384)
T ss_dssp             G---GGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHHHHHHHH
T ss_pred             c---cccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchh--HHHHHHHHHH
Confidence            1   12355566666999999421 23455555 4444444432112222234666655555544322  1123344455


Q ss_pred             HHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCC--c--------
Q psy6547         170 GEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG--L--------  224 (266)
Q Consensus       170 ~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--i--------  224 (266)
                      +..+.+.|++ -+      .+.+..         ...+.|.   ++.|.+... ...+.+|++.|.=-.  .        
T Consensus       257 A~~lA~~L~~-hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg---~~sf~l~~~-~~~a~~f~~~L~l~~~a~SlGg~eSL  331 (384)
T d1cs1a_         257 AQAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGA---MLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESL  331 (384)
T ss_dssp             HHHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCS---EEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCE
T ss_pred             HHHHHHhccc-CCceeeeeeccccchhHHHHHHhhcCCCcc---eeEEeecch-HHHHHHHHHhCCcceeccccCCccce
Confidence            6666666664 22      122211         1224466   888888651 123445555553111  1        


Q ss_pred             eecc-----------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         225 VTKP-----------------ISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       225 ~~~~-----------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      +.-|                 ..++.||+|+.+.    +.+.+++.|+.+++..
T Consensus       332 i~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE----d~eDLi~Dl~~AL~aa  381 (384)
T d1cs1a_         332 ISHAATMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA  381 (384)
T ss_dssp             EEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHH
T ss_pred             eccccccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHHHh
Confidence            1101                 0347899995544    5566777777777654

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.27  E-value=7e-11  Score=97.68  Aligned_cols=224  Identities=13%  Similarity=0.080  Sum_probs=137.5

Q ss_pred             cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHH-HhcCCEEEEeccccCcCCcCc
Q psy6547          13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQTGLGRTGK   91 (266)
Q Consensus        13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~-~~~g~~li~De~~~~~~~~g~   91 (266)
                      +..++.++.+++..|++.+++++  ++++++|++|.+.|+...+.    +++.+++++ +++|+++|+|++...      
T Consensus        58 l~~~gi~~~~~d~~d~~~~~~~i--~~~t~~i~~Es~~np~~~v~----d~~~~~~~~a~~~~~~~vVDnT~at------  125 (331)
T d1pffa_          58 LRKFGVEVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVI----DIEDAVKQARKQKDILVIVDNTFAS------  125 (331)
T ss_dssp             HHHTTCEEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHTTSSSCEEEEECTTTH------
T ss_pred             HHhcCeEEEEecccchhhHhhhc--ccccceeeeecccccccccc----cchhhhhhhhcccCceEEeeccccc------
Confidence            45568889999999999999999  66899999999999888777    888888875 678999999999942      


Q ss_pred             ccccc--cCCCCcCeeeecccccCCc-hhhhhheecHHhhhcc--CCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          92 LLAIH--YEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTL--VPGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        92 ~~~~~--~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      +..+.  .+|.+..+.+.+|.++|.- .-.|.++.+.+.....  .......-...+|..+......++-+..  ..++.
T Consensus       126 p~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~  203 (331)
T d1pffa_         126 PILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRA  203 (331)
T ss_dssp             HHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             cccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHH--HHHHH
Confidence            11222  2344555555889998521 2345667776554332  2222222334567776666666654322  23333


Q ss_pred             HHHHHHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCcee---
Q psy6547         167 YKMGEIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLVT---  226 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~---  226 (266)
                      .+++..+.+.|++ -+      .+.++..         ..+.|.   ++.|.+..  ...+.+|++.|.  ..+.-.   
T Consensus       204 ~~nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~---l~sf~l~~--~~~~~~f~d~l~lf~~~~SlG~~  277 (331)
T d1pffa_         204 AENAQKVAEFLHE-HKAVKKVYYPGLPDHPGHEIAKKQMKMFGS---MIAFDVDG--LEKAKKVLDNCHVVSLAVSLGGP  277 (331)
T ss_dssp             HHHHHHHHHHHHH-CTTCCCEECTTSTTSTTHHHHHHHCSSCCS---EEEEECSS--HHHHHHHHHTCSSSEECSSCCSS
T ss_pred             HHHHHHHHHhhhh-CCcEEeeccccccCccHHHHHhhcccccCc---ccceeecc--HHHHHHHHHhCCcceecccCCCC
Confidence            4445555555554 11      1222110         123466   89999875  445666666653  111111   


Q ss_pred             ----c-c-----------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         227 ----K-P-----------------ISNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       227 ----~-~-----------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                          . |                 ..++.+|+|..+.    +.+.+++.|+++++.
T Consensus       278 ~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE----~~~DLi~Dl~~AL~~  329 (331)
T d1pffa_         278 ESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCE----NVQDIIDDLKQALDL  329 (331)
T ss_dssp             SCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHHHT
T ss_pred             ceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeC----CHHHHHHHHHHHHHH
Confidence                0 0                 0247899996654    455667777777764

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.7e-11  Score=103.53  Aligned_cols=229  Identities=10%  Similarity=-0.011  Sum_probs=137.5

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCC
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGR   88 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~   88 (266)
                      +.+..++.++.+++..|.+++++++  .+++++|++|.+.|+...+.    ++++++++|+++  |+++|+|++......
T Consensus       116 ~~l~~~Gi~~~~~d~~d~~~~~~~i--~~~t~~i~~EtpsNP~l~v~----Di~~i~~~a~~~~~g~~~vVDnT~atP~~  189 (391)
T d1cl1a_         116 KILSKLGVTTSWFDPLIGADIVKHL--QPNTKIVFLESPGSITMEVH----DVPAIVAAVRSVVPDAIIMIDNTWAAGVL  189 (391)
T ss_dssp             HTGGGGTCEEEEECTTCGGGGGGTC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred             hcccccccccccccCcccccccccc--ccccceeeecccCccccccc----ccHHHHHHHHhccCCcEEEEeccccchhh
Confidence            3456778899999999999999888  56899999999999988877    899999999775  999999999942100


Q ss_pred             cCcccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547          89 TGKLLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY  167 (266)
Q Consensus        89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  167 (266)
                       -.+  + .+|.+..+.+.+|.++|.- .-.|.++.+.+..+.+.......-...+|..+..+...|+-+.  -..++..
T Consensus       190 -~~P--l-~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~--lR~~~~~  263 (391)
T d1cl1a_         190 -FKA--L-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHH  263 (391)
T ss_dssp             -SCG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH--HHHHHHH
T ss_pred             -hcc--c-ccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH--HHHHHHH
Confidence             111  1 2455566666889999531 2245566666665554422222222345655555554443221  1234444


Q ss_pred             HHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHH---HHHHHHH--HCCceec
Q psy6547         168 KMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVY---DVCIKMK--DAGLVTK  227 (266)
Q Consensus       168 ~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~l~--~~gi~~~  227 (266)
                      +++..+.+.|++ -+      .+....         ...+.|.   ++.|.+..  ..+.+   +|++.|.  ..+.-..
T Consensus       264 ~nA~~vA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg---~~sf~l~~--~~~~e~~~~f~d~L~l~~~a~SlG  337 (391)
T d1cl1a_         264 ESSLKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSG---LFSFVLKK--KLNNEELANYLDNFSLFSMAYSWG  337 (391)
T ss_dssp             HHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCS---EEEEEESS--CCCHHHHHHHHTTCSSCBCCSCCC
T ss_pred             HHHHHHHHHHHh-cccccccccccccchhhHHHHhhccCCCCc---ceeeeecC--CCCHHHHHHHHHcCCcceEeeCCC
Confidence            555566666654 21      122211         1234455   78888875  22333   3444332  1111110


Q ss_pred             --------c---------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         228 --------P---------------ISNNIIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       228 --------~---------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                              |               ..++.||+|..+    |+.+.+++.|+++++++
T Consensus       338 ~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         338 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             SSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             CCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence                    0               024679999554    46677788888887764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.25  E-value=7.3e-11  Score=98.61  Aligned_cols=212  Identities=16%  Similarity=0.145  Sum_probs=144.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.+++++++++. ++++|++-....+      -.-++++++++|++.|.+++.|-+| +|+--.|. +... +. ..|++
T Consensus       151 D~d~l~~~a~~~-kPklIi~G~S~y~------r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~~P-~~-~aDvv  220 (405)
T d1kl1a_         151 DYDDVREKARLH-RPKLIVAAASAYP------RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL-HPNP-VP-YAHFV  220 (405)
T ss_dssp             CHHHHHHHHHHH-CCSEEEECCSSCC------SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCS-TT-TCSEE
T ss_pred             cHHHHHHHHHhh-CcceEEecccccc------cccChHHHHHHHhhhCCEEecchhhHhhhhhhhh-cCCh-hh-hhhhe
Confidence            789999999765 5788888754422      2228999999999999999999999 44422222 1111 11 24666


Q ss_pred             e--ecccccCCchhhhhheecHHhhhccCCC----CCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547         106 I--LGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  176 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~  176 (266)
                      +  ..|+|.|+  |.|.+++++++.+.++..    .+++..   .-..++...++....+   .++.+++.++++.|.+.
T Consensus       221 t~tThKtlrGP--rgg~I~~~~~~~~~i~~avfPg~qggp~---~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~  295 (405)
T d1kl1a_         221 TTTTHKTLRGP--RGGMILCQEQFAKQIDKAIFPGIQGGPL---MHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASA  295 (405)
T ss_dssp             EEESSSTTCCC--SCEEEEECHHHHHHHHHHHTTTTCSSCC---HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccccCC--CCceEEecchhHHHHHhhhCcccccCcc---hhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            6  55999874  788899998887776532    222222   2233333344443222   45888899999999999


Q ss_pred             hhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------CCCEEEEecc----CCC
Q psy6547         177 LSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPA----LNI  242 (266)
Q Consensus       177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~iR~~~~----~~~  242 (266)
                      |.+ .+...+     ..|.+++++++++... +.+..+..+.|.+.||.+.    |.      ..+.||+..+    ...
T Consensus       296 L~~-~G~~vv-----~ggTd~H~vlvdl~~~-~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~  368 (405)
T d1kl1a_         296 LQN-EGFTLV-----SGGTDNHLLLVDLRPQ-QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF  368 (405)
T ss_dssp             HHH-TTCEEG-----GGSCSSSEEEEECGGG-TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred             Hhc-CCceee-----cCCCccceeecccccc-CCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCC
Confidence            887 443222     3455666899988542 4567777777888899875    22      2478999875    567


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy6547         243 TEQELREGLDIIINTINT  260 (266)
Q Consensus       243 t~~~i~~~~~~l~~~~~~  260 (266)
                      .++|+.++.+.|.++++.
T Consensus       369 ~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         369 GLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             CHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            899999999999988854

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.2e-10  Score=97.65  Aligned_cols=213  Identities=18%  Similarity=0.186  Sum_probs=142.7

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.+++++..++. ++++|++-...  ..-..    ++++++++|++.|.++++|.+| +|+--.|.. .. -... .|++
T Consensus       153 Dyd~l~~~a~~~-kPklIi~G~S~--y~r~~----d~~~~reiad~vga~l~~D~aH~~GLIa~g~~-~s-P~~~-aDvv  222 (416)
T d1dfoa_         153 DYADLEKQAKEH-KPKMIIGGFSA--YSGVV----DWAKMREIADSIGAYLFVDMAHVAGLVAAGVY-PN-PVPH-AHVV  222 (416)
T ss_dssp             CHHHHHHHHHHH-CCSEEEEECSS--CCSCC----CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS-CC-CTTT-SSEE
T ss_pred             cHHHHHHHHHHh-ccceEEecccc--ccccc----CHHHHHHHHHhcCceEEcchhhhhcceecccc-CC-cccc-ccee
Confidence            899999998654 57888876432  22233    8999999999999999999999 544222221 11 1121 3565


Q ss_pred             e--ecccccCCchhhhhheec---HHhhhccC----CCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHH
Q psy6547         106 I--LGKALSGGLYPISAVLAD---DEVMGTLV----PGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF  173 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l  173 (266)
                      +  ..|+|.|+  |.|.++++   +++.+.++    +..+++..   .-..++...++....+   .++.+++.++++.|
T Consensus       223 t~tThKtlrGP--rggiI~~~~~~~~~~~~i~~avfPg~qggp~---~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~L  297 (416)
T d1dfoa_         223 TTTTHKTLAGP--RGGLILAKGGSEELYKKLNSAVFPGGQGGPL---MHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM  297 (416)
T ss_dssp             EEESSSTTCCC--SCEEEEESSCCHHHHHHHHHHHTTTTCSSCC---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhcccCC--CceEEEeccchHhHHHHHHhhhCcccccCcc---HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            5  67999874  77778775   45555443    33333332   2233333444444322   35889999999999


Q ss_pred             HHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------CCCEEEEecc----
Q psy6547         174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPA----  239 (266)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~iR~~~~----  239 (266)
                      .+.|.+ .+.+.+     ..|.+++++.+++.+. +.+..+....|.+.||.+.    |+      ..+.||+..+    
T Consensus       298 a~~L~~-~G~~iv-----~ggTdnHlvlvdl~~~-~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~Tt  370 (416)
T d1dfoa_         298 VEVFLE-RGYKVV-----SGGTDNHLFLVDLVDK-NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITR  370 (416)
T ss_dssp             HHHHHH-TTCEEG-----GGSCSSSEEEEECGGG-TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHH
T ss_pred             HHHHHh-CCcccc-----cCCCCCceeEEEeccc-CCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHh
Confidence            999988 443222     3455666889988642 5567888888899999874    22      3478999875    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy6547         240 LNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       240 ~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      ....++|++++.+.|.++++..
T Consensus       371 rG~~e~d~~~iA~~I~~~l~~~  392 (416)
T d1dfoa_         371 RGFKEAEAKELAGWMCDVLDSI  392 (416)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC
Confidence            5678999999999999887653

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.22  E-value=7.6e-10  Score=93.34  Aligned_cols=230  Identities=13%  Similarity=0.082  Sum_probs=138.4

Q ss_pred             cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHH-hcCCEEEEeccccCcCCc
Q psy6547          11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QYNVLFIADEVQTGLGRT   89 (266)
Q Consensus        11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~-~~g~~li~De~~~~~~~~   89 (266)
                      +.+..++..+.+++..|++++++.+  ++++++|++|.+.|++..+.    +++++.+.++ ++|+++|+|+++.... .
T Consensus       117 ~~~~~~gi~~~~~d~~d~~~~~~~i--~~~t~lv~~Etp~NP~l~v~----Di~~~~~~~~~~~g~~vvvDnT~atP~-~  189 (394)
T d1e5ea_         117 HALTKFGIQVDFINTAIPGEVKKHM--KPNTKIVYFETPANPTLKII----DMERVCKDAHSQEGVLVIADNTFCSPM-I  189 (394)
T ss_dssp             THHHHTTCEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHTSTTCEEEEECTTTCTT-T
T ss_pred             HHhhccceeeeccCCCCHHHHHHhh--cccccEEEEeccCCcceeee----hhhhhhhccccccCeEEEecCcccCcc-c
Confidence            3456678899999999999999999  56899999999999988887    8888888665 5789999999994210 0


Q ss_pred             CcccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547          90 GKLLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENA  166 (266)
Q Consensus        90 g~~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  166 (266)
                      -.++   .+|.+..+.+.+|.++|.- .-.|.++++.+.....+  ......-...+|..+......|+-+  .-..++.
T Consensus       190 ~~Pl---~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL--~lRm~r~  264 (394)
T d1e5ea_         190 TNPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMKAE  264 (394)
T ss_dssp             CCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHHHH
T ss_pred             CCch---hcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH--HHHHHHH
Confidence            1111   2355566666999999421 33456777776654432  2222223335666655555555432  1123444


Q ss_pred             HHHHHHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccc-hHHHHHHHHH--HCCc----
Q psy6547         167 YKMGEIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAIL-EVYDVCIKMK--DAGL----  224 (266)
Q Consensus       167 ~~~~~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~--~~gi----  224 (266)
                      .+++..+.+.|++ -+      .+.+...         ..+.|.   ++.|.+..  +. .+.+|++.|+  ..+.    
T Consensus       265 ~~nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~---~~sf~~~~--~~~~a~~f~~~l~l~~~a~SlGg  338 (394)
T d1e5ea_         265 SENAMKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGS---MITFILKS--GFEGAKKLLDNLKLITLAVSLGG  338 (394)
T ss_dssp             HHHHHHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCS---EEEEEETT--HHHHHHHHHHTCSSSEESSCCCS
T ss_pred             HHHHHHHHHHHhh-cCCccEEeCCCcccccchhhhhcccccCCC---eeeeeccC--CHHHHHHHHHhCCccceeeccCC
Confidence            4556666666665 22      1222210         123466   88888765  22 2444555543  1111    


Q ss_pred             ----eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547         225 ----VTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  262 (266)
Q Consensus       225 ----~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~  262 (266)
                          +..|.                 ..+.||+|..+    |+.+.+++.|+++++.+.
T Consensus       339 ~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         339 CESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL  393 (394)
T ss_dssp             SSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             ccceeECccccccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence                11110                 24689999665    455666777777776653

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.5e-10  Score=97.67  Aligned_cols=226  Identities=12%  Similarity=0.080  Sum_probs=133.5

Q ss_pred             ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHH----hcCCEEEEeccccCcC
Q psy6547          12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS----QYNVLFIADEVQTGLG   87 (266)
Q Consensus        12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~----~~g~~li~De~~~~~~   87 (266)
                      .+..++..+.+++ ++.+++++++  ++++++|++|.+.|+...+.    ++++|+++|+    ++|+++|+|+++..  
T Consensus       113 ~l~~~gi~~~~~~-~~~~~~~~~i--~~~t~lv~~EspsNP~l~v~----Di~~ia~~a~~~~~~~g~~lvVDnT~at--  183 (393)
T d1n8pa_         113 VANAHGVETSFTN-DLLNDLPQLI--KENTKLVWIETPTNPTLKVT----DIQKVADLIKKHAAGQDVILVVDNTFLS--  183 (393)
T ss_dssp             TSTTTCSCCEEES-SHHHHHHHHS--CSSEEEEEECSSCTTTCCCC----CHHHHHHHHHHHTTTTTCEEEEECTTTH--
T ss_pred             hhhcccceeEEee-cchHHHHHHh--hhhcceeEecCcchhhhhcc----chhhhhhhhhhhcccCCceEEEecCccC--
Confidence            3455677777776 4678899988  66899999999999988887    9999999998    78899999999842  


Q ss_pred             CcCcccccc--cCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHH
Q psy6547          88 RTGKLLAIH--YEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI  163 (266)
Q Consensus        88 ~~g~~~~~~--~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  163 (266)
                          +..+.  .+|.+..+.+.+|.++|.- .-.|.++. ++++.+.+...........+|..+..+...|+-+.  -..
T Consensus       184 ----P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~--lR~  257 (393)
T d1n8pa_         184 ----PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRV  257 (393)
T ss_dssp             ----HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred             ----cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchh--hHH
Confidence                11111  2355555666889998421 23455554 44555555432222222456666666655554321  123


Q ss_pred             HHHHHHHHHHHHHhhcc------cccCCCccc---------E--EecCccceeeEEEEeeCccchHHHHHHHHH--HCCc
Q psy6547         164 ENAYKMGEIFRSELSSP------ANKSKASFK---------L--SSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL  224 (266)
Q Consensus       164 ~~~~~~~~~l~~~l~~~------~~~~~~~~~---------~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi  224 (266)
                      ++..+++..+.+.|+.-      ...+.....         .  .+.|.   ++.|.+... ...+.+|++.|.  ..+.
T Consensus       258 ~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~---~~sf~l~~~-~~~~~~f~~~l~l~~~~~  333 (393)
T d1n8pa_         258 RQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGG---MISFRIKGG-AEAASKFASSTRLFTLAE  333 (393)
T ss_dssp             HHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCS---EEEEEESSC-HHHHHHHHHHCSSSEECS
T ss_pred             HHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCc---eEEEEEeCC-HHHHHHHHHhCCcceecc
Confidence            33334445555555421      111222110         1  13467   899998751 123556766663  2111


Q ss_pred             --------eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         225 --------VTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       225 --------~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                              +.-|.                 .++.||+|..+.    +.+.+++.|++++++
T Consensus       334 SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE----~~~DLi~Dl~~AL~~  390 (393)
T d1n8pa_         334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIE----DTDDLLEDIKQALKQ  390 (393)
T ss_dssp             CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSS----CHHHHHHHHHHHHHH
T ss_pred             cCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccC----CHHHHHHHHHHHHHH
Confidence                    11110                 236899996654    556667777777655

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.16  E-value=4.3e-11  Score=100.49  Aligned_cols=188  Identities=10%  Similarity=-0.029  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-------
Q psy6547          62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------  134 (266)
Q Consensus        62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-------  134 (266)
                      +++++.++|+++|+++++|.+++ ++  +..  ++....+.|+.+.+|.++++ -..++++..+.+.+.....       
T Consensus       154 ~~~~i~~~~~~~~al~~vDavss-~g--~~~--id~~~~di~~~s~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (361)
T d2c0ra1         154 EGAQFKAFPDTGSVPLIGDMSSD-IL--SRP--FDLNQFGLVYAGAQKNLGPS-GVTVVIVREDLVAESPKHLPTMLRYD  227 (361)
T ss_dssp             TTEECSSCCCCTTSCEEEECTTT-TT--SSC--CCGGGCSEEEEETTTTTCCS-SCEEEEEEGGGSSSCCTTSCGGGCHH
T ss_pred             ecceEEEeeccCCceEEEEeecc-cc--ccc--cccccceeEEEecccccccc-cCcEEEEEhHHhhhCccccccccccc
Confidence            55567789999999999999995 32  223  33344577888899998843 1233333343332221111       


Q ss_pred             ----CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEe
Q psy6547         135 ----THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILS  205 (266)
Q Consensus       135 ----~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~  205 (266)
                          ......++.+.....+..+.......    ....+.+.....+........... ........+..   .+.+.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~---~~~~~~~  304 (361)
T d2c0ra1         228 TYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDM---NITFRLA  304 (361)
T ss_dssp             HHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSS---EEEEECS
T ss_pred             cccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccce---EEEEECC
Confidence                11122233333333333333333222    233444444444444444311111 11110111223   5777777


Q ss_pred             eCccchHHHHHHHHHHCCceeccCCC--CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         206 VSAILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       206 ~~~~~~~~~~~~~l~~~gi~~~~~~~--~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      +  +.+++++.+.|.++||.++.+..  +.+|++....+|.||++++++.|++..++
T Consensus       305 ~--~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         305 S--EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             C--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             C--cccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            6  67889999999999999987632  35999999999999999999999987654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.15  E-value=3.3e-10  Score=95.37  Aligned_cols=212  Identities=16%  Similarity=0.173  Sum_probs=130.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      |+++|++++  .+++++|++.+..   |...    ++++|.++|+++|++||+|.+|+ +|..-........|  ....+
T Consensus       108 d~~~l~~~i--~~~tkaIi~~h~~---G~~~----~~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~~~g~~g--~~~~S  175 (376)
T d1mdoa_         108 TPEHIEAAI--TPQTKAIIPVHYA---GAPA----DLDAIYALGERYGIPVIEDAAHA-TGTSYKGRHIGARG--TAIFS  175 (376)
T ss_dssp             CHHHHHHHC--CTTEEEECCBCGG---GCCC----CHHHHHHHHHHHTCCBCEECTTC-TTCEETTEETTSSS--EEEEE
T ss_pred             CHHHHHHhc--CCCCeEEEEeCCC---CCcc----chhHHHHHHHhcCceEEeccchh-ccCeeCCeeccccc--Ccccc
Confidence            899999999  5679999987654   3344    88999999999999999999995 32110011111122  22333


Q ss_pred             e--cccccCCchhhhhheec-HHhhhccCCC------------------------CCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547         107 L--GKALSGGLYPISAVLAD-DEVMGTLVPG------------------------THGSTYGGNPLACKLAMTALDVILE  159 (266)
Q Consensus       107 ~--sK~~~~g~~~~g~~~~~-~~~~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~~  159 (266)
                      |  +|.+++|  ..|.++.+ +++.+.++..                        .....+..+.+.++.+...|+.+  
T Consensus       176 f~~~K~l~~g--~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--  251 (376)
T d1mdoa_         176 FHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--  251 (376)
T ss_dssp             CCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--
T ss_pred             CCCcCCCCCC--CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--
Confidence            3  4888855  24555554 4444333210                        11334455666666666555433  


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccccCCC---cccEEecCccceeeEEEEeeC-ccchHHHHHHHHHHCCceeccC------
Q psy6547         160 ENMIENAYKMGEIFRSELSSPANKSKA---SFKLSSGGLKKSINTLILSVS-AILEVYDVCIKMKDAGLVTKPI------  229 (266)
Q Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~------  229 (266)
                      ++..++.+++.+++.+.|++ +.....   .........   .+.+.+... ...+.+++.+.|.++||.+++.      
T Consensus       252 ~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~  327 (376)
T d1mdoa_         252 DALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWH---LFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHT  327 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCS---CEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGG
T ss_pred             hHHHHHHhhhhhhhhhhccc-cccccccccccccccccc---ccccccccccchhhHHHHHHHHHHCCCCeeeECcchhc
Confidence            45677888888999999987 543111   110111111   222222220 0224568999999999987632      


Q ss_pred             -------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         230 -------------------SNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       230 -------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                                         ..+.+.+-.+...|++|+++.++.|.+++
T Consensus       328 ~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         328 QKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             SHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                               12557777778889999999999998875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=9.3e-10  Score=93.81  Aligned_cols=223  Identities=13%  Similarity=0.111  Sum_probs=137.7

Q ss_pred             CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547          14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL   93 (266)
Q Consensus        14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~   93 (266)
                      .+.+-+|+.++.++.......+  ++++++++++.++. .|.+    ++++++.+++++.|.++++|-....++..   -
T Consensus       172 ~~~g~~vv~v~~~~~~~~~~~~--~~~~Aavmi~~Pnt-~G~~----ed~~~i~~~~h~~G~l~~~~ad~~al~~l---~  241 (437)
T d1wyua1         172 EAVGAKLLTLPLEGGRTPLPEV--GEEVGAVVVQNPNF-LGAL----EDLGPFAEAAHGAGALFVAVADPLSLGVL---K  241 (437)
T ss_dssp             HHTTCEEEEECCBTTBCCCCCC--CTTEEEEEEESSCT-TSBC----CCHHHHHHHHHHTTCEEEEECCTTGGGTB---C
T ss_pred             ccceeeEEeeecccccchhhhh--ccceeEEEEccccc-cccc----cchHHHHHHhhhccceEEeeechhhhhcc---c
Confidence            4567788888765432211113  45789988876643 5654    36899999999999988877433222111   1


Q ss_pred             ccccCCCCcCeee-eccccc-----CCchhhhhheecHHhhhccCCCC-----------------------------CCC
Q psy6547          94 AIHYEDVRPDIVI-LGKALS-----GGLYPISAVLADDEVMGTLVPGT-----------------------------HGS  138 (266)
Q Consensus        94 ~~~~~~~~~d~~~-~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~-----------------------------~~~  138 (266)
                      ....+  ..|+++ -+|.|+     || -..|++.+++++.+.+....                             ...
T Consensus       242 ~Pg~~--GaDi~~g~~q~fg~p~g~GG-P~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsn  318 (437)
T d1wyua1         242 PPGAY--GADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSN  318 (437)
T ss_dssp             CHHHH--TCSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCC
T ss_pred             ccccc--ccceEeeccceeccccCCCc-CccccccccchhhccccccccccccccCCcccceeecccccccccccccccc
Confidence            11222  456655 345544     34 45688888988877765321                             011


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547         139 TYGGNPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV  215 (266)
Q Consensus       139 ~~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  215 (266)
                      ..+.+.+.+..+...+..++.++   ..++...++.++.++|.+ +..  +.. ......   |--|.+.-  +.++.++
T Consensus       319 ict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~-~~g--~~~-~~~~~~---f~ef~v~~--~~~~~~i  389 (437)
T d1wyua1         319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLE-VPG--VRP-FTPKPF---FNEFALAL--PKDPEAV  389 (437)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STT--CEE-CSCSSB---CSEEEEEC--SSCHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhh-cCC--eec-cCCCCe---eeEEEEEC--CCCHHHH
Confidence            12344444444555556666554   556677788899999987 432  111 111122   33333332  3368899


Q ss_pred             HHHHHHCCceec-----cCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         216 CIKMKDAGLVTK-----PISNNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       216 ~~~l~~~gi~~~-----~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                      .++|.++|+...     ....+.+.+++.-..|+++||++++.+++++
T Consensus       390 ~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         390 RRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             HHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            999999999742     2246899999999999999999999998863

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.3e-10  Score=97.03  Aligned_cols=203  Identities=10%  Similarity=-0.079  Sum_probs=118.1

Q ss_pred             CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhh
Q psy6547          40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS  119 (266)
Q Consensus        40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g  119 (266)
                      +++++++...++.+|...    +++.+  .++.+++.+++|.+.+ ++    ...++.++.+.++.+.+|+++++ ...+
T Consensus       138 ~~~~v~v~~~~~~t~~~~----~~~~i--~~~~~~~~v~vDa~~~-~~----~~~vd~~~~dv~~~ss~k~~~~~-~~~~  205 (360)
T d1bjna_         138 SDNAAYMHYCPNETIDGI----AIDET--PDFGADVVVAADFSST-IL----SRPIDVSRYGVIYAGAQKNIGPA-GLTI  205 (360)
T ss_dssp             CSSCSCEEECSEETTTTE----ECCCC--CCCCTTCCEEEECTTT-TT----SSCCCGGGCSEEEEETTTTTSST-TCEE
T ss_pred             CCceeEEEecccccccCc----cccce--ecccccceeeeeeecc-cc----ceeeeeccceeEEEEcccccccC-CCce
Confidence            344444444444455544    23333  3577899999998774 32    12345566788888899999965 4566


Q ss_pred             hheecHHhhhccCCC-----------CCCCCCCCcHHHHH-HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-
Q psy6547         120 AVLADDEVMGTLVPG-----------THGSTYGGNPLACK-LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-  183 (266)
Q Consensus       120 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-  183 (266)
                      +++.++...+.....           .........+.... +....+.....   +...++.++...++...+.. ... 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  284 (360)
T d1bjna_         206 VIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-SDFY  284 (360)
T ss_dssp             EEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred             eEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-cccc
Confidence            666665544332211           11111222233322 22222322222   12334444444444444443 322 


Q ss_pred             CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      ............   .+.|.+++  +.+.+++.+.|.++||.++.+.  .+.+|++....+|+||++++++.|++..++
T Consensus       285 ~~~~~~~~rs~~---v~~f~~~~--~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         285 RNDVAKRNRSRM---NVPFQLAD--SALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             ECCBCGGGBCSS---EEEEEESS--GGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcccccce---EEEEEcCC--cccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            111111111233   57788887  7788999999999999988763  245999999999999999999999997765

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.09  E-value=1.3e-09  Score=92.13  Aligned_cols=214  Identities=16%  Similarity=0.173  Sum_probs=131.8

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc-CcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~-g~~~~~~~~~~~~d~~  105 (266)
                      |++.+++.+  .+++++|++.+..+.   ..    +++++.++|+++|+++|+|.+++-.... |..  ...+| +..+.
T Consensus       111 d~~~~~~~i--~~~tk~i~~~~~~g~---~~----d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~--~g~~g-~~~~~  178 (384)
T d1b9ha_         111 DPEAVAAAV--TPRTKVIMPVHMAGL---MA----DMDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATF  178 (384)
T ss_dssp             CHHHHHHHC--CTTEEEECCBCGGGC---CC----CHHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEE
T ss_pred             chhhhcccc--ccccccccccccccc---cc----ccccchhhhhhhhhhhhhhhceecccccCCEe--cCccc-cccee
Confidence            799999988  668999987766653   22    7899999999999999999999522111 111  11122 22233


Q ss_pred             e--ecccccCCchhhhhhee-cHHhhhccCC-----------------CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547         106 I--LGKALSGGLYPISAVLA-DDEVMGTLVP-----------------GTHGSTYGGNPLACKLAMTALDVILEENMIEN  165 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  165 (266)
                      +  .+|.+++|  ..|+++. ++++.+.++.                 ...+..+..+.+.++.+...|+.+  ++..++
T Consensus       179 Sf~~~K~i~~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~  254 (384)
T d1b9ha_         179 SFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAV  254 (384)
T ss_dssp             ECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHH
T ss_pred             ccccccccccc--ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhc--ccchhh
Confidence            3  35888755  2555555 3444433321                 012345557777777776666543  445677


Q ss_pred             HHHHHHHHHHHhhcccccC---CCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----------
Q psy6547         166 AYKMGEIFRSELSSPANKS---KASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----------  230 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~---~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------  230 (266)
                      .+++.+++.+.|.+ +...   ...... .....   ++.+.++.....+.++|.+.|.++||.+++..           
T Consensus       255 R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~  330 (384)
T d1b9ha_         255 RDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHY---MAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWE  330 (384)
T ss_dssp             HHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCS---EEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHH
T ss_pred             hhhhhhhhhhhhhc-ccccccccccccccccccc---cccceecccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHh
Confidence            77888888888887 4321   111101 11122   34444433112345679999999999865320           


Q ss_pred             ----------------------CCEEEEeccCCCC-HHHHHHHHHHHHHHHHH
Q psy6547         231 ----------------------NNIIRLSPALNIT-EQELREGLDIIINTINT  260 (266)
Q Consensus       231 ----------------------~~~iR~~~~~~~t-~~~i~~~~~~l~~~~~~  260 (266)
                                            .+.+.+-.+...| ++|++..++.|.+++.+
T Consensus       331 ~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         331 LGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             SSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                                  1446666666666 67999999999998864

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.08  E-value=3.1e-10  Score=94.93  Aligned_cols=191  Identities=13%  Similarity=0.016  Sum_probs=112.1

Q ss_pred             CCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC
Q psy6547          53 AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV  132 (266)
Q Consensus        53 ~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~  132 (266)
                      +|.+.    +++++.++|+++|+++++|.+++ ++  +....++  ..+.|+.+++|.++++ -..+++...+...+...
T Consensus       149 tg~~~----~~~~i~~~~~~~g~l~ivDavqs-~g--~~~id~~--~~~vd~~~~~~~k~~~-~~~~~~~~~~~~~~~~~  218 (360)
T d1w23a_         149 SNNTI----YGTQYQNFPEINHAPLIADMSSD-IL--SRPLKVN--QFGMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE  218 (360)
T ss_dssp             SEETT----TTEECSSCCCCCSSCEEEECTTT-TT--SSCCCGG--GCSEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred             CCccc----cceeeeeccccceeeEEeecccc-cc--ccccccc--cccceEEeeccccccC-CcceeeEechhhhcccc
Confidence            45555    77788999999999999999995 32  2333343  3467888999988744 23455554444333222


Q ss_pred             CC-----------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccccc---CCCcccEEecC
Q psy6547         133 PG-----------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPANK---SKASFKLSSGG  194 (266)
Q Consensus       133 ~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~g  194 (266)
                      ..           ......+.......+....+......    ...++.+............ ...   .......++ .
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~rS-~  296 (360)
T d1w23a_         219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRS-L  296 (360)
T ss_dssp             TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBC-S
T ss_pred             cCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-cccccccCCChhhcc-e
Confidence            11           11122233333333333333333332    2223333333333332222 111   111111122 2


Q ss_pred             ccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         195 LKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                      .   .+.|.+++  +.+.+++...|.++||.++.+.  .+.+|+|...++|.|+++++++.++++.+.
T Consensus       297 ~---vvsf~i~~--~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         297 M---NVTFNLRN--EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             S---EEEEECSS--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             e---EEEEEcCC--CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            3   57788876  6678899999999999987652  245999987788999999999999988754

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.06  E-value=7.2e-10  Score=93.34  Aligned_cols=213  Identities=15%  Similarity=0.157  Sum_probs=134.3

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      +.+++++.+  .+++++|++.+..+.   ..    +++++.++|+++|+++|.|.+|+ +   |..+.-...|-..|+.+
T Consensus       109 ~~~~~~~~~--~~~t~avi~vh~~G~---~~----~~~~i~~~~~~~~i~lIEDaaqa-~---Ga~~~~~~~G~~g~~~~  175 (371)
T d2fnua1         109 DELALEKLI--NERTKAIVSVDYAGK---SV----EVESVQKLCKKHSLSFLSDSSHA-L---GSEYQNKKVGGFALASV  175 (371)
T ss_dssp             CGGGSGGGC--CTTEEEEEEECGGGC---CC----CHHHHHHHHHHHTCEEEEECTTC-T---TCEETTEETTSSSSEEE
T ss_pred             cchhhhhhc--cchhhcccccccccc---cc----ccccccccccccchhhccchhhc-c---CceeccccCCccccccc
Confidence            456666666  568999998876643   33    78899999999999999999995 3   22122222344445555


Q ss_pred             ec----ccccCCchhhhhhee-cHHhhhccCCC----------------CCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547         107 LG----KALSGGLYPISAVLA-DDEVMGTLVPG----------------THGSTYGGNPLACKLAMTALDVILEENMIEN  165 (266)
Q Consensus       107 ~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  165 (266)
                      +|    |.+++| - .|+++. ++++.+.++..                ..+..+..+.+.++.+...|+.+  ++..++
T Consensus       176 ~Sf~~~K~l~~g-~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~  251 (371)
T d2fnua1         176 FSFHAIKPITTA-E-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQK  251 (371)
T ss_dssp             EECCTTSSSCCS-S-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred             cccccccccccc-c-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhc--cchhhh
Confidence            44    888865 2 556665 44555554321                12455567777777777666543  445666


Q ss_pred             HHHHHHHHHHHhhcccccCC-Ccc--cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------------
Q psy6547         166 AYKMGEIFRSELSSPANKSK-ASF--KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------------  229 (266)
Q Consensus       166 ~~~~~~~l~~~l~~~~~~~~-~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------  229 (266)
                      .+++..++.+.|.+ ..... ...  .......   .+.+.+......+.+++.+.|.++||-+++.             
T Consensus       252 R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~  327 (371)
T d2fnua1         252 REEAALTYDRIFKD-NPYFTPLHPLLKDKSSNH---LYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQL  327 (371)
T ss_dssp             HHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCS---CEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHH
T ss_pred             hhhhhhhhcccccc-cccccccccccccccccc---cccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhc
Confidence            77778888888877 43211 111  0111122   3444444321234678999999999987642             


Q ss_pred             ------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547         230 ------------SNNIIRLSPALNITEQELREGLDIIINTINT  260 (266)
Q Consensus       230 ------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~  260 (266)
                                  ....+.+-++...|++|+++.++.|.+++++
T Consensus       328 ~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         328 FNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence                        0145666666778999999999999998875

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.05  E-value=3.7e-09  Score=89.63  Aligned_cols=211  Identities=17%  Similarity=0.191  Sum_probs=139.1

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV  105 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~  105 (266)
                      |.++++++.++. ++++|++-....+      -.-++++++++|++.|.+|++|-+| +|+.-.|.. .... . ..|++
T Consensus       164 Dyd~~~~~a~~~-kPklIi~G~S~y~------r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~-~sP~-~-~aDvv  233 (463)
T d2a7va1         164 DYNQLALTARLF-RPRLIIAGTSAYA------RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI-PSPF-K-HADIV  233 (463)
T ss_dssp             CHHHHHHHHHHH-CCSEEEECCSSCC------SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSS-CCGG-G-TCSEE
T ss_pred             cHHHHHHHHhhc-CCceEEecccccc------cccCHHHHHHHhhcccceEEechhhhhHHhhhhhh-cChh-h-hhhhh
Confidence            899999998664 5788888754432      2228999999999999999999999 544222221 1111 1 13666


Q ss_pred             e--ecccccCCchhhhhheecHH---------------hhhcc----CCCCCCCCCCCcHHHHHHHHHHHHHHhh---cc
Q psy6547         106 I--LGKALSGGLYPISAVLADDE---------------VMGTL----VPGTHGSTYGGNPLACKLAMTALDVILE---EN  161 (266)
Q Consensus       106 ~--~sK~~~~g~~~~g~~~~~~~---------------~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~  161 (266)
                      +  ..|+|.|+  |.|.++++++               +.+.+    .+..++...   .-..++...++....+   .+
T Consensus       234 t~tTHKTlrGP--rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph---~h~iAa~Ava~~ea~~~~fk~  308 (463)
T d2a7va1         234 TTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPH---NHAIAAVAVALKQACTPMFRE  308 (463)
T ss_dssp             EEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCC---HHHHHHHHHHHHHHHSHHHHH
T ss_pred             hchhhhhhcCC--CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhh---hhhHHHHHHHHHHhcCchHHH
Confidence            6  56999874  7777877652               22222    222232222   2223333334443322   35


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----c-----CCCC
Q psy6547         162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----P-----ISNN  232 (266)
Q Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~-----~~~~  232 (266)
                      +.+++.++++.|.+.|.+ .+...+     ..|.++.++.+++... +.+..+..+.|.+.||.+.    |     ...+
T Consensus       309 Ya~qVv~NAk~La~~L~~-~G~~vv-----~ggTdnHlvlvdl~~~-~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~s  381 (463)
T d2a7va1         309 YSLQVLKNARAMADALLE-RGYSLV-----SGGTDNHLVLVDLRPK-GLDGARAERVLELVSITANKNTCPGDRSAITPG  381 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCEEG-----GGSCSSSEEEEECTTT-TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCeee-----cCCCCCceeeeecccc-CCCHHHHHHHHHhccCccCCccCCCCCCCCCCC
Confidence            888889999999988887 443322     3455666888887542 4578888899999999885    2     2456


Q ss_pred             EEEEecc----CCCCHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPA----LNITEQELREGLDIIINTIN  259 (266)
Q Consensus       233 ~iR~~~~----~~~t~~~i~~~~~~l~~~~~  259 (266)
                      .||+..+    ....++|+.++.+.|.++++
T Consensus       382 GiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         382 GLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             EEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8999875    56788999999999988775

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.00  E-value=6e-09  Score=88.62  Aligned_cols=210  Identities=14%  Similarity=0.152  Sum_probs=138.5

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcc-cccccCCCCcCe
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKL-LAIHYEDVRPDI  104 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~-~~~~~~~~~~d~  104 (266)
                      |.+++++..++. ++++|++-....+      -.-++++++++|++.|.+|++|-+| +|+--.|.. -++.    ..|+
T Consensus       168 Dyd~l~~~a~~~-kPklIi~G~S~y~------r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~----~aDv  236 (470)
T d1rv3a_         168 DYDRLEENARLF-HPKLIIAGTSCYS------RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHV  236 (470)
T ss_dssp             CHHHHHHHHHHH-CCSEEEECCSSCC------SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSE
T ss_pred             cHHHHHHHHHhh-CcceEeechhhcc------ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh----eeee
Confidence            789999998654 5788888754432      1228999999999999999999999 544222221 1121    1366


Q ss_pred             ee--ecccccCCchhhhhheecHH---------------hhhccC----CCCCCCCCCCcHHHHHHHHHHHHHHhh---c
Q psy6547         105 VI--LGKALSGGLYPISAVLADDE---------------VMGTLV----PGTHGSTYGGNPLACKLAMTALDVILE---E  160 (266)
Q Consensus       105 ~~--~sK~~~~g~~~~g~~~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~---~  160 (266)
                      ++  ..|+|.|+  |.|.++++++               +.+.++    +..++..   ..-..++...++....+   .
T Consensus       237 vt~tTHKtlrGP--rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggp---h~~~IAa~Ava~~ea~~~~fk  311 (470)
T d1rv3a_         237 VTTTTHKTLRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGP---HNHAIAGVAVALKQAMTPEFK  311 (470)
T ss_dssp             EEEESSGGGCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSC---CHHHHHHHHHHHHHHTSHHHH
T ss_pred             eeeehhhhccCC--cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccc---hhhHHHHHHHHHHHhcChHHH
Confidence            66  66999764  6777877643               223332    2222222   22233333344544433   3


Q ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC-----CC
Q psy6547         161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI-----SN  231 (266)
Q Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~  231 (266)
                      ++.+++.++.+.+.+.|.+ .+...+     ..|.++.++.+++... +.+..++.+.|.+.||.+.    |.     ..
T Consensus       312 ~Ya~qvv~NAk~La~~L~~-~G~~v~-----~ggTdnHlvlvdl~~~-g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~  384 (470)
T d1rv3a_         312 EYQRQVVANCRALSAALVE-LGYKIV-----TGGSDNHLILVDLRSK-GTDGGRAEKVLEACSIACNKNTCPGDKSALRP  384 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCEEG-----GGSCSSSEEEEEGGGG-TCCHHHHHHHHHHTTEECEEECCSSCSCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCceec-----cCCCCCceEEEeeccc-CCcHHHHHHHHHHcCcEECCCcCCCCCCCCCC
Confidence            5788888899988888887 443222     3355566888887542 5577888888899999875    22     34


Q ss_pred             CEEEEecc----CCCCHHHHHHHHHHHHHHHH
Q psy6547         232 NIIRLSPA----LNITEQELREGLDIIINTIN  259 (266)
Q Consensus       232 ~~iR~~~~----~~~t~~~i~~~~~~l~~~~~  259 (266)
                      +.||+..+    ....++|+.++.+.|.++++
T Consensus       385 sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         385 SGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             CEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            78999875    57899999999999988875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=6.5e-08  Score=83.19  Aligned_cols=216  Identities=16%  Similarity=0.166  Sum_probs=137.0

Q ss_pred             CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547          27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI  106 (266)
Q Consensus        27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~  106 (266)
                      +.+.++...  ..+++++++..+++.+...    +..+.+.++++++|..+++|-+..... .+.. ...  +...|+++
T Consensus       191 ~~~~~~~~~--~~~~a~v~v~~p~~~g~~e----~~~~~~~~~~h~~g~~~~~~~~~~~~~-~~l~-~p~--~~g~div~  260 (471)
T d1wyub1         191 DLEALKREL--GPHVAALMLTNPNTLGLFE----RRILEISRLCKEAGVQLYYDGANLNAI-MGWA-RPG--DMGFDVVH  260 (471)
T ss_dssp             CHHHHHHHC--STTEEEEEECSSCTTSCCC----TTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTC-CHH--HHTCSEEE
T ss_pred             cchhhhhhh--hccccceeeccCCCccccc----chhhhhHHHHHhccccccccccchhhh-hhcc-ccC--cccccccc
Confidence            567777666  4578888887766655443    378899999999999888875542110 0100 001  11233433


Q ss_pred             --eccccc-----CCchhhhhheecHHhhhccCCC----------------CC---CCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547         107 --LGKALS-----GGLYPISAVLADDEVMGTLVPG----------------TH---GSTYGGNPLACKLAMTALDVILEE  160 (266)
Q Consensus       107 --~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~----------------~~---~~~~~~~~~~~~a~~~~l~~~~~~  160 (266)
                        .++.||     || --+|++.+.+++.+.+...                +|   -...+.+.+.+.++...+..+..+
T Consensus       261 vg~~q~~G~P~~~GG-P~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~  339 (471)
T d1wyub1         261 LNLHKTFTVPHGGGG-PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLE  339 (471)
T ss_dssp             CCTTTTTCCCCTTSC-CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccc-ccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCch
Confidence              345443     44 4578888998888777532                11   011233455555555566667665


Q ss_pred             ---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC-CCC
Q psy6547         161 ---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI-SNN  232 (266)
Q Consensus       161 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-~~~  232 (266)
                         ++-+++.+++.++.++|+. .+.....    ...+   |--|.+....+.+..++.++|.++|++..    |. ..+
T Consensus       340 GL~elA~~~~~~A~Yla~~L~~-~G~~~~~----~~~f---f~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~  411 (471)
T d1wyub1         340 GLKKAAALAVLNARYLKELLKE-KGYRVPY----DGPS---MHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKE  411 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTCBCSS----CSSC---CSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh-cCceecc----Ccce---eeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCC
Confidence               4667788899999999976 4432211    1122   33333333225678889999999999753    22 357


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547         233 IIRLSPALNITEQELREGLDIIINTINTM  261 (266)
Q Consensus       233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~  261 (266)
                      .+.+|+.-.+|++|||++++.|++++++.
T Consensus       412 ~llv~vTE~~tkedID~lv~aL~~i~~e~  440 (471)
T d1wyub1         412 ALMVEPTETEAKETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             CEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999998753

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=1.9e-08  Score=85.05  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=67.0

Q ss_pred             CCCCCCceeecCCC-HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547          14 GPHMPGYNIIPYND-VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   92 (266)
Q Consensus        14 ~~~~~~v~~~~~~d-~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~   92 (266)
                      ..++..+.+++.++ .+..+..+  ++++++|++|.+.|++..+.    ++++|+++|+++|+++|+|++...     .+
T Consensus       119 ~~~gi~~~~~d~~~~~~~~~~~~--~~~t~li~~EtpsNP~l~v~----Di~~i~~iA~~~g~~~vvDnT~a~-----tP  187 (421)
T d2ctza1         119 KRLGIEVRFTSREERPEEFLALT--DEKTRAWWVESIGNPALNIP----DLEALAQAAREKGVALIVDNTFGM-----GG  187 (421)
T ss_dssp             HHTTCEEEECCTTCCHHHHHHHC--CTTEEEEEEESSCTTTCCCC----CHHHHHHHHHHHTCEEEEECGGGG-----GG
T ss_pred             hhccccceecccccCcchhcccc--CCCceEEEEcCCCcceeEec----chHHHHHHHHhcCCceEecccccc-----cc
Confidence            45677778887555 45556666  56899999999999998888    999999999999999999999841     11


Q ss_pred             cccc--cCCCCcCeeeecccccC
Q psy6547          93 LAIH--YEDVRPDIVILGKALSG  113 (266)
Q Consensus        93 ~~~~--~~~~~~d~~~~sK~~~~  113 (266)
                      +.+.  .+|.+..+.+.+|.++|
T Consensus       188 ~~~~Pl~~GaDiVvhS~TKyl~G  210 (421)
T d2ctza1         188 YLLRPLAWGAALVTHSLTKWVGG  210 (421)
T ss_dssp             TSCCGGGGTCSEEEEETTTTTTC
T ss_pred             eeccccccCCcEEEEechhhccC
Confidence            1111  24555556668999994

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.88  E-value=5e-08  Score=81.78  Aligned_cols=201  Identities=12%  Similarity=0.209  Sum_probs=123.1

Q ss_pred             CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeec----ccccC
Q psy6547          38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG----KALSG  113 (266)
Q Consensus        38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~s----K~~~~  113 (266)
                      .++++++++....+.   ..    +++++.++|+++|++||+|.+|+ +|   ..+.-...|-..|+.++|    |.+++
T Consensus       109 ~~~~~aii~~~~~G~---~~----d~~~i~~~~~~~~i~vIED~a~a-~g---~~~~~~~~G~~gd~~~fSf~~~K~l~t  177 (374)
T d1o69a_         109 EKKPKALILTHLYGN---AA----KMDEIVEICKENDIVLIEDAAEA-LG---SFYKNKALGTFGEFGVYSYNGNKIITT  177 (374)
T ss_dssp             SSCCCEEEEECGGGC---CC----CHHHHHHHHHHTTCEEEEECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCC
T ss_pred             ccccccccccccccc---hh----hhHHHHHHhhccCcchhhhhhhh-hc---ceECCeecCCCCceEEEeccCcccccc
Confidence            557888888777653   33    89999999999999999999995 32   211111233345666644    88884


Q ss_pred             Cchhhhhhee-cHHhhhccCCC--------------CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Q psy6547         114 GLYPISAVLA-DDEVMGTLVPG--------------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS  178 (266)
Q Consensus       114 g~~~~g~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~  178 (266)
                      | - .|+++. ++++.+.+...              ..+..+.++.+.++.+...|+.+  +...++.+++.+++.+.|.
T Consensus       178 g-e-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~  253 (374)
T d1o69a_         178 S-G-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLG  253 (374)
T ss_dssp             S-S-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHT
T ss_pred             c-c-ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhcc
Confidence            4 1 455554 55555444210              12345567778777777766544  3356666777888888887


Q ss_pred             cccccC--CCcccEEecCccceeeEEEEeeC-------------------ccchHHHHHHHHHHCCceeccCC-------
Q psy6547         179 SPANKS--KASFKLSSGGLKKSINTLILSVS-------------------AILEVYDVCIKMKDAGLVTKPIS-------  230 (266)
Q Consensus       179 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~gi~~~~~~-------  230 (266)
                      . ....  .... ......   +..+.+...                   ...+..++.+.|.++||-+++.-       
T Consensus       254 ~-~~~~~~~~~~-~~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~  328 (374)
T d1o69a_         254 E-YFSFLDELEN-SRSNRW---LSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQE  328 (374)
T ss_dssp             T-TEECCCCCTT-EECCCS---SEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCG
T ss_pred             c-cccccccccC-CCCChh---heeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhCh
Confidence            7 3321  1111 111111   111111100                   01246789999999999876431       


Q ss_pred             -----------------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547         231 -----------------NNIIRLSPALNITEQELREGLDIIINTI  258 (266)
Q Consensus       231 -----------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~  258 (266)
                                       ...+.+-.+...|++|+++.++.|.+++
T Consensus       329 ~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~l  373 (374)
T d1o69a_         329 VFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSI  373 (374)
T ss_dssp             GGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHH
Confidence                             1335555566789999999999999876

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.86  E-value=1  Score=36.02  Aligned_cols=79  Identities=14%  Similarity=0.044  Sum_probs=53.7

Q ss_pred             ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhc--CCCEEEEEEccccCCCC---------------------cc---
Q psy6547           3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS--NPNICAFMVEPIQGEAG---------------------AV---   56 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~--~~~~~~i~~~~~~~~~g---------------------~~---   56 (266)
                      +..|.++-|.|..+.++    .++.-..|++.|.-  .-.+.+|.+.|+....+                     .+   
T Consensus         2 ~~~~~~~~~~f~w~~~~----~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~   77 (393)
T d1hvxa2           2 APFNGTMMQYFEWYLPD----DGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTK   77 (393)
T ss_dssp             CCCCCCEEECCCTTCCS----SSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCS
T ss_pred             CCCCceEEEeEeeccCC----CCChHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCC
Confidence            44566666777666543    23345667766632  22689999999752211                     01   


Q ss_pred             cCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547          57 VPDDGYLKKVRALCSQYNVLFIADEVQTG   85 (266)
Q Consensus        57 ~~~~~~l~~l~~l~~~~g~~li~De~~~~   85 (266)
                      .-+.+.++++++.||++|+-||+|=|+..
T Consensus        78 ~Gt~~df~~LV~~aH~~GIkVIlDvV~NH  106 (393)
T d1hvxa2          78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH  106 (393)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            23568999999999999999999999843