Psyllid ID: psy6548

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MSLQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Secondary Structure (PSIPRED)
ccEEEccccHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHHHHHccEEEEEccccccccccccHHHcccccccHHHHHHHHccccccccEEEEccHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccEEccccHHHHEEcccccccHHHHHHHHHHcccEEccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccHHHHHHHHccccEEEEEEcccEcccccEcccccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHcccccEEEEcHHHHccccccEEEEEcHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEEEcccccccHHHHHHHHHHccEEccEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mslqfpvkskqvpaklksnpnicafmvepiqgeagavvpddgyLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIhyedvrpdIVILGKAlsgglypisavladdevmgtlvpgthgstyggnpLACKLAMTALDVILEENMIENAYKMGEIFRSELrsrlspdivpvvrgKGLLNAIVLDKSILEVYDVCIKMkdaglvtkpisnniirlspalniTEQELREGLDIIINTINTMAAKKT
Flexible Loop (DISEMBL)
mslqfpvkskqvpaklksnpNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDaglvtkpisnniirlspalNITEQELREGLDIIINTINTMAAKKT
Low Complexity Region (SEG)
MSLQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Disordered region (IsUnstruct)
********************NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT******
Disordered Region (DISOPRED)
MSLQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA****
Disordered Region (DISEMBL)
*************AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Disordered Region (DISPRO)
MSLQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q9VW26	431	Ornithine aminotransferas	yes	N/A	0.896	0.503	0.634	1e-79
P49724	432	Ornithine aminotransferas	N/A	N/A	0.896	0.502	0.648	7e-78
P04181	439	Ornithine aminotransferas	yes	N/A	0.892	0.492	0.610	2e-73
P29758	439	Ornithine aminotransferas	yes	N/A	0.892	0.492	0.605	4e-73
P04182	439	Ornithine aminotransferas	yes	N/A	0.892	0.492	0.600	1e-72
Q18040	422	Probable ornithine aminot	yes	N/A	0.909	0.521	0.563	6e-69
Q92413	454	Ornithine aminotransferas	yes	N/A	0.880	0.469	0.571	4e-68
Q3ZCF5	439	Ornithine aminotransferas	yes	N/A	0.892	0.492	0.614	6e-68
Q07805	414	Ornithine aminotransferas	N/A	N/A	0.958	0.560	0.515	2e-66
Q6LFH8	414	Ornithine aminotransferas	yes	N/A	0.958	0.560	0.515	2e-66

>sp|Q9VW26|OAT_DROME Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster GN=Oat PE=2 SV=1

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/219 (63%), Positives = 179/219 (81%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LC++YNVL+IADEVQTGL RTGKLLA+ Y
Sbjct: 215 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDY 274

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E V+PDI+ILGKALSGG+YP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 275 EQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 334

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMG++ R+EL S L  D+V VVRGKGLLNAIV+++   + ++VC+++K+ 
Sbjct: 335 QEEKLAENAFKMGDLLRNEL-STLPKDVVSVVRGKGLLNAIVINQK-FDAWEVCLRLKEN 392

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct: 393 GLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKTILSM 431

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 3

>sp|P49724|OAT_DROAN Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae GN=Oat PE=1 SV=1

 Score =  290 bits (741), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/219 (64%), Positives = 175/219 (79%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGE G VVP DGYLKKVR LCS+ NVL+IADEVQTGL RTGKLLA++Y
Sbjct: 216 DPNVCAFMVEPIQGERGVVVPSDGYLKKVRELCSKNNVLWIADEVQTGLARTGKLLAVNY 275

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           EDV+PDI+ILGKALSGGLYP+SAVL +D VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 276 EDVQPDILILGKALSGGLYPVSAVLCNDPVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 335

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMGE+ RSEL S L  D+V VVRGKGLLNAIV+++   + + VC+K+K+ 
Sbjct: 336 QEEKLAENAFKMGELLRSEL-STLPKDVVSVVRGKGLLNAIVINEK-YDAWKVCLKLKEN 393

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I    LRE ++II  TI +M
Sbjct: 394 GLLAKPTHGDIIRFAPPLVIMNPRLRESIEIIKKTILSM 432

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P04181|OAT_HUMAN Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P29758|OAT_MOUSE Ornithine aminotransferase, mitochondrial OS=Mus musculus GN=Oat PE=1 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/218 (60%), Positives = 171/218 (78%), Gaps = 2/218 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           +E+VRPD+V+LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 HENVRPDMVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEV 339

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA KMG I R EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKMGAILRKELM-KLPSDVVTSVRGKGLLNAIVIRETKDCDAWKVCLRLR 398

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTI 436

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P04182|OAT_RAT Ornithine aminotransferase, mitochondrial OS=Rattus norvegicus GN=Oat PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 171/218 (78%), Gaps = 2/218 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           +E+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 HENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEV 339

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EE++ ENA KMG I R EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEEHLAENADKMGAILRKEL-MKLPSDVVTAVRGKGLLNAIVIRETKDCDAWKVCLRLR 398

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTI 436

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q18040|OAT_CAEEL Probable ornithine aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=C16A3.10 PE=2 SV=3

 Score =  260 bits (665), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 125/222 (56%), Positives = 168/222 (75%), Gaps = 2/222 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           + N+ AFMVEPIQGEAG V+PD GYLK V  LC +YNVLFI DEVQ+GLGR+GKLLA ++
Sbjct: 202 DKNVAAFMVEPIQGEAGVVLPDPGYLKGVSDLCKKYNVLFITDEVQSGLGRSGKLLAHYH 261

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           ++VRPDIV+LGKALSGG YP+SAVL DD VM  + PG HGSTYGGNPLACK+A+ AL+++
Sbjct: 262 DNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPGEHGSTYGGNPLACKVAIAALEIL 321

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE ++EN+  MG++  S+L++ L  DIV  VRGKGL  AIV++K   + + VC+K+K+ 
Sbjct: 322 QEEKLVENSAVMGDLLMSKLKT-LPKDIVSTVRGKGLFCAIVINKK-YDAWKVCLKLKEN 379

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
           GL+ K    +IIR +P L I ++++ +  DIII T+   A +
Sbjct: 380 GLLAKNTHGDIIRFAPPLCINKEQVEQAADIIIKTVTDFAKQ 421

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q92413|OAT_EMENI Ornithine aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=otaA PE=3 SV=2

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/217 (57%), Positives = 165/217 (76%), Gaps = 4/217 (1%)

Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           K+  N+ AF+VEPIQGEAG +VPDD YL+  R+LC Q+NVL I DE+QTG+ RTGKLL  
Sbjct: 207 KAGSNLAAFLVEPIQGEAGIIVPDDDYLQLARSLCDQHNVLLICDEIQTGIARTGKLLCH 266

Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 136
            +  ++PD+V+LGKA+SGG+YP+S VL   +VM T+ PGTHGSTYGGNPLAC +A+ AL+
Sbjct: 267 EWSGIKPDMVLLGKAISGGMYPVSCVLGRKDVMLTVEPGTHGSTYGGNPLACAVAIRALE 326

Query: 137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILE---VYDVCI 193
           V+ EENM+E A K+G+ FRS L +  +P I+  VRGKGLLNAIV+D+S       +D+C+
Sbjct: 327 VVQEENMVERAEKLGQAFRSGLEAIQNP-IIQTVRGKGLLNAIVIDESKTNGHTAWDLCM 385

Query: 194 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
            MK+ GL+ KP   NIIRL+P L ITE+E+ + L+II
Sbjct: 386 LMKEKGLLAKPTHQNIIRLAPPLVITEEEIAKALEII 422

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q3ZCF5|OAT_BOVIN Ornithine aminotransferase, mitochondrial OS=Bos taurus GN=OAT PE=2 SV=1

 Score =  257 bits (656), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 170/218 (77%), Gaps = 2/218 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+Q+ VLFIADE+QTGL RTG+ LAI 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAID 279

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           +E+VRPDIV+LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 HENVRPDIVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA KMG I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENAEKMGIILRNELM-KLPSDVVTTVRGKGLLNAIVIRETKDCDAWKVCLRLR 398

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E E+ E ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDEILEAVEIINKTI 436

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q07805|OAT_PLAFD Ornithine aminotransferase OS=Plasmodium falciparum (isolate CDC / Honduras) GN=OAT PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/233 (51%), Positives = 165/233 (70%), Gaps = 1/233 (0%)

Query: 3   LQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62
           L+ P    +   K   +PN+CAF+VEP+QGEAG +VP D Y   V +LC +YNVLF+ADE
Sbjct: 175 LKVPYDDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADE 234

Query: 63  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG 122
           VQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA+D+VM  L PG HGSTYG
Sbjct: 235 VQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYG 294

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL 181
           GNPLA  + + AL V++ E + ENA K+G  F   L+ +L    +V  VRGKGLL AI  
Sbjct: 295 GNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEF 354

Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT+++L E  +II+ T+
Sbjct: 355 KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTV 407

The enzyme has a very narrow substrate specificity and can only catalyze the transamination of alpha-ketoglutarate with ornithine or N-acetylornithine and of glutamate-5-semialdehyde with glutamate and alanine.

Plasmodium falciparum (isolate CDC / Honduras) (taxid: 5836)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q6LFH8|OAT_PLAF7 Ornithine aminotransferase OS=Plasmodium falciparum (isolate 3D7) GN=OAT PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/233 (51%), Positives = 165/233 (70%), Gaps = 1/233 (0%)

Query: 3   LQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62
           L+ P    +   K   +PN+CAF+VEP+QGEAG +VP D Y   V +LC +YNVLF+ADE
Sbjct: 175 LKVPYDDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADE 234

Query: 63  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG 122
           VQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA+D+VM  L PG HGSTYG
Sbjct: 235 VQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYG 294

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL 181
           GNPLA  + + AL V++ E + ENA K+G  F   L+ +L    +V  VRGKGLL AI  
Sbjct: 295 GNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEF 354

Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT+++L E  +II+ T+
Sbjct: 355 KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTV 407

The enzyme has a very narrow substrate specificity and can only catalyze the transamination of alpha-ketoglutarate with ornithine or N-acetylornithine and of glutamate-5-semialdehyde with glutamate and alanine.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
193690595	436	PREDICTED: ornithine aminotransferase, m	0.896	0.497	0.665	1e-80
195496181	430	GE22477 [Drosophila yakuba] gi|194181685	0.896	0.504	0.652	4e-79
332376120	426	unknown [Dendroctonus ponderosae]	0.904	0.514	0.621	4e-79
195354226	431	GM16950 [Drosophila sechellia] gi|194127	0.896	0.503	0.643	8e-79
194874252	430	GG13385 [Drosophila erecta] gi|190655152	0.896	0.504	0.648	9e-79
125977866	433	GA21318 [Drosophila pseudoobscura pseudo	0.896	0.501	0.639	2e-78
195089262	433	GH24027 [Drosophila grimshawi] gi|193905	0.900	0.503	0.631	6e-78
195020608	433	GH14619 [Drosophila grimshawi] gi|193898	0.900	0.503	0.631	6e-78
91093629	433	PREDICTED: similar to AGAP004793-PA [Tri	0.921	0.515	0.600	8e-78
21357415	431	ornithine aminotransferase precursor [Dr	0.896	0.503	0.634	8e-78

>gi|193690595|ref|XP_001949004.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328701505|ref|XP_003241621.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|328701507|ref|XP_003241622.1| PREDICTED: ornithine aminotransferase, mitochondrial-like isoform 3 [Acyrthosiphon pisum]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 181/218 (83%), Gaps = 1/218 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           NPN+CAFMVEP+QGEAGAVVP  GYLK VR LC++YNVL+I DEVQ GLGRTGK+LA+ Y
Sbjct: 215 NPNVCAFMVEPLQGEAGAVVPTLGYLKGVRELCTKYNVLWIDDEVQAGLGRTGKMLAVDY 274

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E+V+PD++ILGKALSGG+YPISAVL + EVM  L PGTHGSTYGGN LACK+A+ +LDVI
Sbjct: 275 ENVKPDLLILGKALSGGVYPISAVLGNSEVMDVLTPGTHGSTYGGNALACKVALASLDVI 334

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD-KSILEVYDVCIKMKD 197
           + E ++ENA+KMGEIFRSEL +RL+ D V  VRG+GLLNAIVL+ K +  VY +  ++K 
Sbjct: 335 ISEGLVENAFKMGEIFRSELTARLNKDKVVQVRGRGLLNAIVLNTKGVSNVYKLNNELKS 394

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
            G+++KPI +  +R SP L ITE +LREG+DII+NTIN
Sbjct: 395 NGMISKPIGSGALRFSPPLIITEAQLREGIDIIVNTIN 432

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195496181|ref|XP_002095584.1| GE22477 [Drosophila yakuba] gi|194181685|gb|EDW95296.1| GE22477 [Drosophila yakuba]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/219 (65%), Positives = 179/219 (81%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LCS+YNVL+IADEVQTGL RTGKLLA++Y
Sbjct: 214 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCSKYNVLWIADEVQTGLARTGKLLAVNY 273

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E V+PDI+ILGKALSGGLYP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 274 EQVQPDILILGKALSGGLYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 333

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMGE+ R EL S L  D+V VVRGKGLLNAIV+++   + ++VC+K+K+ 
Sbjct: 334 QEEKLAENAFKMGELLRGEL-STLPKDVVSVVRGKGLLNAIVINQK-FDAWEVCLKLKEN 391

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct: 392 GLLAKPTHGDIIRFAPPLIINETQMRESIDIIRKTILSM 430

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376120|gb|AEE63200.1| unknown [Dendroctonus ponderosae]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 180/219 (82%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +P +C FMVEPIQGEAG  VPD+GYLK +R LC++YNVL+IADE+QTGLGRTGK LA+ Y
Sbjct: 206 DPLVCGFMVEPIQGEAGIKVPDEGYLKGIRELCTKYNVLWIADEIQTGLGRTGKRLAVDY 265

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           EDV+PDI++LGKAL GG+YP+SA LADD VM  + PGTHGST+GGNPL C++A+ +LDV+
Sbjct: 266 EDVKPDILVLGKALGGGVYPVSAALADDSVMLVIEPGTHGSTFGGNPLGCRVAIASLDVL 325

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            +E + ENAYKMGEI R EL SR++  +V  +RGKGLLNAIV++++  E +DVC+++K+ 
Sbjct: 326 EKEGISENAYKMGEIMRKELSSRINKKVVCEIRGKGLLNAIVMNRNYAEAWDVCLQLKEK 385

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP  ++IIR +P L I EQEL E L+II+NTIN++
Sbjct: 386 GLLAKPTHDDIIRFAPPLIINEQELSESLEIIVNTINSI 424

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354226|ref|XP_002043600.1| GM16950 [Drosophila sechellia] gi|194127768|gb|EDW49811.1| GM16950 [Drosophila sechellia]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 179/219 (81%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LC++YNVL+IADEVQTGL RTGKLLA++Y
Sbjct: 215 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVNY 274

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E V+PDI+ILGKALSGG+YP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 275 EQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 334

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMGE+ R EL S L  D+V VVRGKGLLNAIV+++   + ++VC+K+K+ 
Sbjct: 335 QEEKLAENAFKMGELLRKEL-STLPKDVVSVVRGKGLLNAIVINQK-FDAWEVCLKLKEN 392

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct: 393 GLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKTILSM 431

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194874252|ref|XP_001973369.1| GG13385 [Drosophila erecta] gi|190655152|gb|EDV52395.1| GG13385 [Drosophila erecta]

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/219 (64%), Positives = 178/219 (81%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LCS+YNVL+IADEVQTGL RTGKLLA++Y
Sbjct: 214 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCSKYNVLWIADEVQTGLARTGKLLAVNY 273

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E V+PDI+ILGKALSGG+YP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 274 EQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 333

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMGE+ R EL S L  D+V VVRGKGLLNAIV+++   + ++VC+K+K  
Sbjct: 334 QEEKLAENAFKMGELLRGEL-STLPQDVVSVVRGKGLLNAIVINQK-FDAWEVCLKLKQN 391

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct: 392 GLLAKPTHGDIIRFAPPLIINETQMRESIDIIRKTILSM 430

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125977866|ref|XP_001352966.1| GA21318 [Drosophila pseudoobscura pseudoobscura] gi|54641717|gb|EAL30467.1| GA21318 [Drosophila pseudoobscura pseudoobscura]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 181/219 (82%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LCS+YNVL+IADEVQTGL RTG++LA++Y
Sbjct: 217 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCSKYNVLWIADEVQTGLARTGRMLAVNY 276

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           EDV+PDI+ILGKALSGG+YP+SAVLA+D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 277 EDVQPDILILGKALSGGMYPVSAVLANDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 336

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENAYKMG++ RSEL  +L  D+V VVRGKGLLNAIV+++   + ++VC+++K+ 
Sbjct: 337 QEEKLAENAYKMGDLLRSEL-GQLPKDVVSVVRGKGLLNAIVINQK-YDAWNVCLRLKEN 394

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++ E +DII  TI +M
Sbjct: 395 GLLAKPTHGDIIRFAPPLVINEAQMLESIDIIKKTILSM 433

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195089262|ref|XP_001997481.1| GH24027 [Drosophila grimshawi] gi|193905702|gb|EDW04569.1| GH24027 [Drosophila grimshawi]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/220 (63%), Positives = 180/220 (81%), Gaps = 2/220 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+CAFMVEPIQGEAG VVPDDGYL++VR LC+++NVL+IADEVQTGL RTG++LAI 
Sbjct: 216 QDPNVCAFMVEPIQGEAGVVVPDDGYLRQVRDLCTKHNVLWIADEVQTGLARTGRMLAID 275

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE V+PDI+ILGKALSGG+YP+SA L +DE+M  + PG HGSTYGGNPL C++A+ AL V
Sbjct: 276 YEQVKPDILILGKALSGGIYPVSAALCNDEIMLCIKPGEHGSTYGGNPLGCRVAIAALTV 335

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           + EEN+ ENA+KMG++ RSEL S+L  D+V VVRGKGLLNAIV++ S  + +DVC+K++D
Sbjct: 336 LQEENLAENAFKMGQLLRSEL-SKLPKDVVSVVRGKGLLNAIVIN-SKFDAWDVCMKLRD 393

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
            GL+ KP   +IIR +P L ITE ++ E +DII  TI +M
Sbjct: 394 NGLLAKPTHGDIIRFAPPLVITETQMLESIDIIKKTILSM 433

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195020608|ref|XP_001985229.1| GH14619 [Drosophila grimshawi] gi|193898711|gb|EDV97577.1| GH14619 [Drosophila grimshawi]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/220 (63%), Positives = 180/220 (81%), Gaps = 2/220 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+CAFMVEPIQGEAG VVPDDGYL++VR LC+++NVL+IADEVQTGL RTG++LAI 
Sbjct: 216 QDPNVCAFMVEPIQGEAGVVVPDDGYLRQVRDLCTKHNVLWIADEVQTGLARTGRMLAID 275

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE V+PDI+ILGKALSGG+YP+SA L +DE+M  + PG HGSTYGGNPL C++A+ AL V
Sbjct: 276 YEQVKPDILILGKALSGGIYPVSAALCNDEIMLCIKPGEHGSTYGGNPLGCRVAIAALTV 335

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           + EEN+ ENA+KMG++ RSEL S+L  D+V VVRGKGLLNAIV++ S  + +DVC+K++D
Sbjct: 336 LQEENLAENAFKMGQLLRSEL-SKLPKDVVSVVRGKGLLNAIVIN-SKFDAWDVCMKLRD 393

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
            GL+ KP   +IIR +P L ITE ++ E +DII  TI +M
Sbjct: 394 NGLLAKPTHGDIIRFAPPLVITETQMLESIDIIKKTILSM 433

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093629|ref|XP_972301.1| PREDICTED: similar to AGAP004793-PA [Tribolium castaneum] gi|270015769|gb|EFA12217.1| hypothetical protein TcasGA2_TC005134 [Tribolium castaneum]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 182/223 (81%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +P +C FMVEPIQGEAG VVP +GYLK VR LC++YNVL+ ADE+QTGLGRTGK LA+ 
Sbjct: 211 QDPLVCGFMVEPIQGEAGVVVPSEGYLKGVRNLCTKYNVLWTADEIQTGLGRTGKRLAVD 270

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YEDV+PDI++LGKAL GG+YP+SA LA+D +M  + PGTHGST+GGNPL  K+A+ AL+V
Sbjct: 271 YEDVKPDILVLGKALGGGVYPVSACLANDPIMLVIEPGTHGSTFGGNPLGSKVAIAALEV 330

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           + EEN+ +NA+++GEIFR +LR RLS D+V  VRG+GLLNAIV++K+ +E +DVC+KMK+
Sbjct: 331 LEEENLAQNAFELGEIFRVQLRKRLSKDVVIEVRGRGLLNAIVINKNYIEAWDVCLKMKE 390

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
            GL+ K   +NIIR +P L +T+ +L+E ++II+ TIN++  K
Sbjct: 391 NGLIAKHTHDNIIRFAPPLIMTKDQLQESIEIIVKTINSIETK 433

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357415|ref|NP_649139.1| ornithine aminotransferase precursor [Drosophila melanogaster] gi|30315971|sp|Q9VW26.1|OAT_DROME RecName: Full=Ornithine aminotransferase, mitochondrial; AltName: Full=Ornithine--oxo-acid aminotransferase; Flags: Precursor gi|7293759|gb|AAF49127.1| ornithine aminotransferase precursor [Drosophila melanogaster] gi|15010402|gb|AAK77249.1| GH01984p [Drosophila melanogaster] gi|220944900|gb|ACL84993.1| Oat-PA [synthetic construct] gi|220954744|gb|ACL89915.1| Oat-PA [synthetic construct]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 139/219 (63%), Positives = 179/219 (81%), Gaps = 2/219 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAFMVEPIQGEAG VVP DGYLKKVR LC++YNVL+IADEVQTGL RTGKLLA+ Y
Sbjct: 215 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDY 274

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E V+PDI+ILGKALSGG+YP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct: 275 EQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 334

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + ENA+KMG++ R+EL S L  D+V VVRGKGLLNAIV+++   + ++VC+++K+ 
Sbjct: 335 QEEKLAENAFKMGDLLRNEL-STLPKDVVSVVRGKGLLNAIVINQK-FDAWEVCLRLKEN 392

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct: 393 GLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKTILSM 431

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
FB|FBgn0022774	431	Oat "Ornithine aminotransferas	0.896	0.503	0.634	1.6e-72
UNIPROTKB|E1BRW0	441	OAT "Uncharacterized protein"	0.888	0.487	0.625	2.7e-68
UNIPROTKB|F1NMV3	438	OAT "Uncharacterized protein"	0.888	0.490	0.620	3.5e-68
UNIPROTKB|P04181	439	OAT "Ornithine aminotransferas	0.888	0.489	0.612	1.9e-67
MGI|MGI:97394	439	Oat "ornithine aminotransferas	0.888	0.489	0.608	2.4e-67
UNIPROTKB|F1MYG0	439	OAT "Ornithine aminotransferas	0.888	0.489	0.617	4e-67
UNIPROTKB|Q3ZCF5	439	OAT "Ornithine aminotransferas	0.888	0.489	0.617	4e-67
UNIPROTKB|F1SDP3	439	OAT "Uncharacterized protein"	0.888	0.489	0.608	4e-67
RGD|621724	439	Oat "ornithine aminotransferas	0.888	0.489	0.603	5.1e-67
UNIPROTKB|F1Q2A2	440	OAT "Uncharacterized protein"	0.888	0.488	0.608	4.5e-66

FB|FBgn0022774 Oat "Ornithine aminotransferase precursor" [Drosophila melanogaster (taxid:7227)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/219 (63%), Positives = 179/219 (81%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+CAFMVEPIQGEAG VVP DGYLKKVR LC++YNVL+IADEVQTGL RTGKLLA+ Y
Sbjct:   215 DPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDY 274

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E V+PDI+ILGKALSGG+YP+SAVL +D+VM  + PG HGSTYGGNPL C++AM AL+V+
Sbjct:   275 EQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVL 334

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
              EE + ENA+KMG++ R+EL S L  D+V VVRGKGLLNAIV+++   + ++VC+++K+ 
Sbjct:   335 QEEKLAENAFKMGDLLRNEL-STLPKDVVSVVRGKGLLNAIVINQKF-DAWEVCLRLKEN 392

Query:   199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
             GL+ KP   +IIR +P L I E ++RE +DII  TI +M
Sbjct:   393 GLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKTILSM 431

GO:0005759 "mitochondrial matrix" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS;NAS

GO:0006591 "ornithine metabolic process" evidence=ISS;NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1BRW0 OAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 137/219 (62%), Positives = 173/219 (78%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++NVLFIADE+QTGL RTGK+LA+ +
Sbjct:   221 DPNVAAFMVEPIQGEAGVIVPDKGYLTGVRDLCTKHNVLFIADEIQTGLARTGKMLAVDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDI++LGKALSGGLYP+SAVL DDEVM T+ PG HGSTYGGNPLAC++A+ AL+VI
Sbjct:   281 ENVRPDIILLGKALSGGLYPVSAVLCDDEVMLTIKPGEHGSTYGGNPLACRVALAALEVI 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD---VCIKM 195
              EE +++NA  MG I R+EL    S DIV  VRG+GLLNAIV+ K   + YD   VC+++
Sbjct:   341 EEEGLVKNAEIMGNILRNELMKTPS-DIVTCVRGRGLLNAIVIRKPKPQYYDAWKVCLRL 399

Query:   196 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
             +D GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct:   400 RDNGLLAKPTHGDIIRLAPPLVIKEDEIRECIEIIHKTI 438

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1NMV3 OAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/216 (62%), Positives = 171/216 (79%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++NVLFIADE+QTGL RTGK+LA+ +
Sbjct:   221 DPNVAAFMVEPIQGEAGVIVPDKGYLTGVRDLCTKHNVLFIADEIQTGLARTGKMLAVDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDI++LGKALSGGLYP+SAVL DDEVM T+ PG HGSTYGGNPLAC++A+ AL+VI
Sbjct:   281 ENVRPDIILLGKALSGGLYPVSAVLCDDEVMLTIKPGEHGSTYGGNPLACRVALAALEVI 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
              EE +++NA  MG I R+EL    S DIV  VRG+GLLNAIV+     + + VC++++D 
Sbjct:   341 EEEGLVKNAEIMGNILRNELMKTPS-DIVTCVRGRGLLNAIVIRTKDYDAWKVCLRLRDN 399

Query:   199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
             GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct:   400 GLLAKPTHGDIIRLAPPLVIKEDEIRECIEIIHKTI 435

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P04181 OAT "Ornithine aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 133/217 (61%), Positives = 171/217 (78%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ Y
Sbjct:   221 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDY 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKD 197
              EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++D
Sbjct:   341 EEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct:   400 NGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0034214 "protein hexamerization" evidence=IDA

GO:0005739 "mitochondrion" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=EXP

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:97394 Oat "ornithine aminotransferase" [Mus musculus (taxid:10090)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 132/217 (60%), Positives = 170/217 (78%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ +
Sbjct:   221 DPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPD+V+LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDMVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EEN+ ENA KMG I R EL  +L  D+V  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   341 EEENLAENADKMGAILRKELM-KLPSDVVTSVRGKGLLNAIVIRETKDCDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct:   400 NGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTI 436

GO:0003824 "catalytic activity" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0034214 "protein hexamerization" evidence=ISO

UNIPROTKB|F1MYG0 OAT "Ornithine aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 134/217 (61%), Positives = 169/217 (77%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+Q+ VLFIADE+QTGL RTG+ LAI +
Sbjct:   221 DPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAIDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDIV+LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDIVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EEN+ ENA KMG I R+EL  +L  D+V  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   341 EEENLAENAEKMGIILRNELM-KLPSDVVTTVRGKGLLNAIVIRETKDCDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIR +P L I E E+ E ++II  TI
Sbjct:   400 NGLLAKPTHGDIIRFAPPLVIKEDEILEAVEIINKTI 436

GO:0005739 "mitochondrion" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q3ZCF5 OAT "Ornithine aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 134/217 (61%), Positives = 169/217 (77%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+Q+ VLFIADE+QTGL RTG+ LAI +
Sbjct:   221 DPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAIDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDIV+LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDIVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EEN+ ENA KMG I R+EL  +L  D+V  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   341 EEENLAENAEKMGIILRNELM-KLPSDVVTTVRGKGLLNAIVIRETKDCDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIR +P L I E E+ E ++II  TI
Sbjct:   400 NGLLAKPTHGDIIRFAPPLVIKEDEILEAVEIINKTI 436

GO:0034214 "protein hexamerization" evidence=ISS

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1SDP3 OAT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 132/217 (60%), Positives = 169/217 (77%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+Q+ VLFIADE+QTGL RTG+ LA+ +
Sbjct:   221 DPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDI++LGKALSGGLYP+SAVL DDE+M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EEN+ ENA KMG I R+EL  +L  DIV  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   341 EEENLAENAEKMGTILRNELM-KLPSDIVTTVRGKGLLNAIVIRETKDYDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIR +P L I E E+ E ++II  T+
Sbjct:   400 NGLLAKPTHGDIIRFAPPLVIKEDEILESVEIINKTV 436

GO:0005739 "mitochondrion" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

RGD|621724 Oat "ornithine aminotransferase" [Rattus norvegicus (taxid:10116)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 131/217 (60%), Positives = 170/217 (78%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG +VPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ +
Sbjct:   221 DPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDH 280

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V+
Sbjct:   281 ENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEVL 340

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EE++ ENA KMG I R EL  +L  D+V  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   341 EEEHLAENADKMGAILRKELM-KLPSDVVTAVRGKGLLNAIVIRETKDCDAWKVCLRLRD 399

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIRL+P L I E E+RE ++II  TI
Sbjct:   400 NGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTI 436

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=TAS

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006591 "ornithine metabolic process" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0034214 "protein hexamerization" evidence=ISO;ISS

GO:0055129 "L-proline biosynthetic process" evidence=IEA

UNIPROTKB|F1Q2A2 OAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 132/217 (60%), Positives = 168/217 (77%)

Query:    19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+Q+ VLFIADE+QTGL RTG+ LA+ +
Sbjct:   222 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTQHQVLFIADEIQTGLARTGRWLAVDH 281

Query:    79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             E VRPD+V+LGKALSGGLYP+SAVL DDE+M T+  G HGSTYGGNPL C++A+ AL+V+
Sbjct:   282 EGVRPDVVLLGKALSGGLYPVSAVLCDDEIMLTIKAGEHGSTYGGNPLGCRVAIAALEVL 341

Query:   139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKD 197
              EEN+ ENA KMG I R+EL  +L  DIV  VRGKGLLNAIV+ +    + + VC++++D
Sbjct:   342 EEENLGENAEKMGIILRNELM-KLPSDIVTAVRGKGLLNAIVIRETKDYDAWKVCLRLRD 400

Query:   198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              GL+ KP   +IIR +P L I E E++E ++II  TI
Sbjct:   401 NGLLAKPTHGDIIRFAPPLVIKEDEIQESVEIINKTI 437

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6LFH8	OAT_PLAF7	2, ., 6, ., 1, ., 1, 3	0.5150	0.9586	0.5603	yes	N/A
Q92413	OAT_EMENI	2, ., 6, ., 1, ., 1, 3	0.5714	0.8801	0.4691	yes	N/A
Q9P7L5	OAT_SCHPO	2, ., 6, ., 1, ., 1, 3	0.5384	0.8966	0.4954	yes	N/A
Q9FNK4	OAT_ARATH	2, ., 6, ., 1, ., 1, 3	0.5137	0.8801	0.4484	yes	N/A
Q18040	OAT_CAEEL	2, ., 6, ., 1, ., 1, 3	0.5630	0.9090	0.5213	yes	N/A
P04182	OAT_RAT	2, ., 6, ., 1, ., 1, 3	0.6009	0.8925	0.4920	yes	N/A
P04181	OAT_HUMAN	2, ., 6, ., 1, ., 1, 3	0.6100	0.8925	0.4920	yes	N/A
Q3ZCF5	OAT_BOVIN	2, ., 6, ., 1, ., 1, 3	0.6146	0.8925	0.4920	yes	N/A
Q54JP5	OAT_DICDI	2, ., 6, ., 1, ., 1, 3	0.5391	0.8884	0.5168	yes	N/A
Q9VW26	OAT_DROME	2, ., 6, ., 1, ., 1, 3	0.6347	0.8966	0.5034	yes	N/A
Q10G56	OAT_ORYSJ	2, ., 6, ., 1, ., 1, 3	0.5285	0.8471	0.4334	yes	N/A
P29758	OAT_MOUSE	2, ., 6, ., 1, ., 1, 3	0.6055	0.8925	0.4920	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	242
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	1e-128
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-118
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	1e-113
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	9e-95
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-86
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	9e-83
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-81
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	8e-80
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	3e-74
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	1e-70
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	9e-69
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-68
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	4e-65
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	8e-65
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	3e-63
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	6e-58
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	6e-58
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	4e-56
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	2e-54
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	4e-54
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	4e-54
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	4e-53
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	2e-52
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	3e-49
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	6e-49
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-48
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	1e-47
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	2e-47
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	5e-46
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-45
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	2e-45
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	4e-45
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	5e-45
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	7e-45
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	1e-44
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	6e-44
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	9e-44
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	2e-43
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	3e-43
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	3e-43
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	3e-43
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	7e-43
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	1e-42
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	5e-42
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	2e-40
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	3e-40
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	7e-39
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	3e-38
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	5e-38
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	7e-38
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	1e-37
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	4e-37
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	7e-36
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	9e-36
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	1e-34
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	1e-33
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	2e-33
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	4e-32
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	5e-32
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	1e-31
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	3e-31
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-30
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	3e-30
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	4e-30
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	9e-29
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	9e-29
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	1e-28
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	3e-27
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	3e-27
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	2e-26
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-25
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	4e-23
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	2e-22
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	7e-22
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	3e-19
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	7e-17
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	8e-17
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	4e-15
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	3e-14
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	6e-14
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	3e-12
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-04

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  367 bits (943), Expect = e-128
 Identities = 141/218 (64%), Positives = 180/218 (82%), Gaps = 3/218 (1%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
           PN+CAF+VEPIQGEAG VVPDDGYLKKVR LC+++NVL IADE+QTGLGRTGKLL + +E
Sbjct: 185 PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHE 244

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
           +V+PDIV+LGKALSGG+YP+SAVLADD+VM T+ PG HGSTYGGNPLAC +A+ AL+V+ 
Sbjct: 245 NVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLE 304

Query: 140 EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKMKD 197
           EE + ENA K+GEIFR +L+ +L   I+  VRG+GLLNAIV+D+S      +D+C+K+K+
Sbjct: 305 EEKLAENAEKLGEIFRDQLK-KLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKE 363

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
            GL+ KP   NIIRL+P L ITE++L EGL+II   I+
Sbjct: 364 KGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  342 bits (878), Expect = e-118
 Identities = 134/229 (58%), Positives = 174/229 (75%), Gaps = 2/229 (0%)

Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           KL  +PN+ AF+VEPIQGEAG +VPDDGYLK+V  LC +YNVL I DE+QTGLGRTGKLL
Sbjct: 172 KLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL 231

Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
           A  +E V+PDIV+LGKALSGGLYPISAVLA+D+VM  + PG HGSTYGGNPLAC +A+ A
Sbjct: 232 AHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEA 291

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVLDKS-ILEVYDVC 192
           L+V+ EE + ENA ++GE+FR  L+  L     V  +RGKGLLNAIV D S  +  +D+C
Sbjct: 292 LEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLC 351

Query: 193 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
           +K+K+ GL+ KP  +NIIR +P L IT+++L + L+II   + +  + K
Sbjct: 352 LKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSNK 400

Length = 400

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  331 bits (850), Expect = e-113
 Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 10/238 (4%)

Query: 14  AKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
              + +   I AF+ EPIQGEAG V+P DGYLK VR LCS++NVL IADE+QTGL RTGK
Sbjct: 216 KIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK 275

Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
           +LA  +E+VRPD+VILGKAL GG+ P+SAVLAD +VM  + PG HGST+GGNPLA  +AM
Sbjct: 276 MLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAM 335

Query: 133 TALDVILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAIVLDKSIL---E 187
            AL V+ +E + E + K+G+  R +L+   +  P ++  VRG+GLLNA+VL+   L    
Sbjct: 336 AALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVS 395

Query: 188 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL----DIIINTINTMAAKK 241
            YDVC+K+K+ GL+ KP  + IIRL+P L+I+E EL+E      D++ + +  + + K
Sbjct: 396 AYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKLQSAK 453

Length = 474

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  282 bits (725), Expect = 9e-95
 Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 3/224 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           + +  A +VEPIQGE G +     +LK +R LC ++  L I DEVQTGLGRTGKL A  +
Sbjct: 182 DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEH 241

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PDI+ L KAL GG +PI A+LA +E+     PG HGST+GGNPLAC +A+  L+V+
Sbjct: 242 YGVEPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVL 300

Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           LEE ++EN  + GE     LR       +V  VRG+GL+  I L +      D+   +++
Sbjct: 301 LEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY-RARDIVRALRE 359

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
            G++  P   N+IR  P L ITE+E+ E LD +   +   +A+ 
Sbjct: 360 EGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASARV 403

Length = 404

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  261 bits (670), Expect = 2e-86
 Identities = 102/224 (45%), Positives = 134/224 (59%), Gaps = 11/224 (4%)

Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +    + A +VEPIQGE G +VP  GYLK +R LC ++ +L IADEVQTG GRTGK+ A 
Sbjct: 187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAF 246

Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTA 134
            +  V PDIV LGK L GGL P+ AVL  +E+M      PG HG T+GGNPLAC  A+  
Sbjct: 247 EHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAV 305

Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK-------SIL 186
           L+V+ EE ++ENA ++GE  R  LR       +V  VRG+GL+  I L K          
Sbjct: 306 LEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKE 365

Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
               +     + GL+ +P   N+IRL P L ITE+E+ EGLD +
Sbjct: 366 LAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDAL 409

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  251 bits (645), Expect = 9e-83
 Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 5/221 (2%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
                A M+EPIQGE G    D  YL+ +R LC +  +L I DEVQTG+GRTGKL A  +
Sbjct: 180 TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI+ L K L GG+ PI AVLA ++V     PG HGST+GGNPLAC  A+  +++I
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEII 298

Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
            EE ++ENA ++GE  R++LR  L     +  VRG GL+  I LD+   E+     K  +
Sbjct: 299 EEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVK---KALE 355

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
            GL+     +N++RL P L I+++E+ E +D +   +  + 
Sbjct: 356 KGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKELL 396

Length = 396

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  249 bits (637), Expect = 1e-81
 Identities = 101/212 (47%), Positives = 144/212 (67%), Gaps = 4/212 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
            PN  AF+VEPIQGEAG  +P +G+LK  R LC + NVLFIADE+QTGLGRTGKL A  +
Sbjct: 184 TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDW 243

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           ++V PD+ ILGKAL GG++PIS V A+ +++G   PG+HGST+GGNPLAC +++ AL+V+
Sbjct: 244 DNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL 303

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + E + ++GE F+ +L+   +P I   VRG+GL   + L++        C  +K+ 
Sbjct: 304 EEEKLPERSLELGEYFKEQLKEIDNPMIKE-VRGRGLFIGVELNEP---ARPYCEALKEE 359

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
           GL+ K     +IR +P L IT++EL    + I
Sbjct: 360 GLLCKETHETVIRFAPPLVITKEELDWAFEKI 391

Length = 396

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  244 bits (625), Expect = 8e-80
 Identities = 110/218 (50%), Positives = 144/218 (66%), Gaps = 1/218 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
            PN  AF+VEPIQGEAG ++P  GY  +VR LC+  NV  I DE+QTGLGRTGKLLA  +
Sbjct: 185 TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEH 244

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           E +  D+ ++GKALSGG YP+SAVL++ EV+G L PG HGST+GGNPLAC +A  AL V+
Sbjct: 245 EGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVL 304

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE MIENA +MG  F   LRS  S  IV  VRG+GL+ A+ L+         C  +K+ 
Sbjct: 305 TEEGMIENAAEMGAYFLEGLRSIRSN-IVREVRGRGLMLAVELEPEAGGARQYCEALKER 363

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
           GL+ K   ++ IRL+P L IT +++   L+ I   +  
Sbjct: 364 GLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLAH 401

Length = 401

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  228 bits (584), Expect = 3e-74
 Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           K   + NI A +VEPIQGE G V P  G+L  +R +C ++ VL IADEVQTG GRTGKL 
Sbjct: 171 KAVHDDNIAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLF 230

Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
           A  +  V PDI+ L KAL+GG  P+SAVLA  E+M    PG+HG T+GGNPLAC  A+  
Sbjct: 231 ACEHYGVTPDIMTLAKALTGG-LPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAV 289

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDK 183
           LD+I +EN+++NA + G+  R  L +     ++  VRGKGL+ AI + K
Sbjct: 290 LDIIEDENLLQNAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIEIVK 338

Length = 338

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  220 bits (564), Expect = 1e-70
 Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 12/228 (5%)

Query: 11  QVP------AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 64
           QVP       K    PN  A ++EPIQGE G     D +LK +R LC +  +L I DEVQ
Sbjct: 159 QVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQ 218

Query: 65  TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN 124
            G+GRTGKL A  +  V PDI+ + K + GG +P+ A LA +E    + PGTHGSTYGGN
Sbjct: 219 CGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGN 277

Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLD 182
           PLA  +    LDVIL    ++N  +MG   + +L   +   PD++  VRGKGLL  +   
Sbjct: 278 PLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGL--- 334

Query: 183 KSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
           K ++   D+   ++D GL+T    +N++RL P L ITE+E+ E L+ +
Sbjct: 335 KCVVPNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERL 382

Length = 389

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  217 bits (556), Expect = 9e-69
 Identities = 97/218 (44%), Positives = 134/218 (61%), Gaps = 14/218 (6%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A ++EPIQGE G +VP  G+LK +R LC ++ +L IADEVQTG GRTGK+ A  +  V P
Sbjct: 225 AIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEP 284

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           DIV L K+L GGL P+SAV+   E+M    PG HG T+GGNP+AC  A+  LDVI EEN+
Sbjct: 285 DIVTLAKSLGGGL-PLSAVVGRAEIM-DWPPGGHGGTFGGNPVACAAALAVLDVIEEENL 342

Query: 144 IENAYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAI--VLDKSILEVY-----DVCIK 194
           +E A ++GE  R  L   L     ++  VRG GL+  +  V D+   E        +  +
Sbjct: 343 LERAAELGEYLRDRLE-ELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVAR 401

Query: 195 MKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
             + GL+  T     N++R+ P L I+++EL EGLDI+
Sbjct: 402 AFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDIL 439

Length = 447

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  215 bits (550), Expect = 1e-68
 Identities = 84/209 (40%), Positives = 116/209 (55%), Gaps = 4/209 (1%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
             A +VEPIQGE G       +LK +R +C   + L I DEVQTG+GRTGK  A  +  +
Sbjct: 171 TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI 230

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PDI+ L K L GG+ PI A LA +EV     PG HGST+GGNPLAC  A+  L+VI +E
Sbjct: 231 EPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKE 289

Query: 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLV 201
            ++EN  + G+ F+  L           VRGKGL+  I L+       D+  K  + GL+
Sbjct: 290 RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA---PCKDIVKKALEKGLL 346

Query: 202 TKPISNNIIRLSPALNITEQELREGLDII 230
                  ++R  P L IT++E+ E +  +
Sbjct: 347 VNCAGPKVLRFLPPLIITKEEIDEAVSAL 375

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  208 bits (531), Expect = 4e-65
 Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 16/234 (6%)

Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I AF+VEP+  G  G +VP  GYLK+VR +C +Y +L IADEV TG GRTGK+ A  + 
Sbjct: 214 TIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHA 273

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTA 134
            + PDI+ L K L+GG  P+SAVL  D +      G      HG TY GNPLAC  A+  
Sbjct: 274 GIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALAN 333

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL--DKSILEVYDV 191
           LD++ EE+++E   ++G   ++ L++ L    +V  VRG GL+ AI L  DK+    ++ 
Sbjct: 334 LDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEA 393

Query: 192 CI------KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
            +         + GL+ +P+  ++I L P L IT +E+ E +D +   ++   A
Sbjct: 394 RVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLA 446

Length = 449

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  207 bits (529), Expect = 8e-65
 Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 9/220 (4%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A +VEPIQGE G VVP   + K++R L  +Y +L I DEVQTG+GRTGK+ AI +  V
Sbjct: 222 VAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV 281

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PDI+ L KA++GGL P+ AV+   E+M  L PG+H +T+GGNP+A   A+  L+ + EE
Sbjct: 282 EPDIITLAKAIAGGL-PLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEEL-EE 338

Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVY-----DVCIKM 195
            ++ENA K+GE  R EL+      + +  VRG GL+  + L K   E        V  + 
Sbjct: 339 GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEA 398

Query: 196 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
              GL+      + IR+ P L ITE+E   GL+I+   I 
Sbjct: 399 FKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK 438

Length = 441

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  202 bits (515), Expect = 3e-63
 Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A  +EPIQGEAG V P  GYL   R +  ++  L + DEVQTG+GRTG   A  ++ V P
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP 245

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           D+V L K L GGL PI A LA       L PG HGST+GGNP+AC  A+  LD I  E +
Sbjct: 246 DVVTLAKGLGGGL-PIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGL 304

Query: 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK 203
           +ENA ++GE  R+ + +   P +V  VRG+GLL  IVL   + +   V    ++AG +  
Sbjct: 305 LENAERLGEQLRAGIEALGHP-LVDHVRGRGLLLGIVLTAPVAK--AVEAAAREAGFLVN 361

Query: 204 PISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
            ++ ++IRL+P L IT+ ++   +  +   ++  AA 
Sbjct: 362 AVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAAAA 398

Length = 398

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  188 bits (480), Expect = 6e-58
 Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 15/217 (6%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            + CA +VEPIQGE G +     +L+ +R LC Q+N L I DEVQTG+GRTG L A  + 
Sbjct: 183 DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHY 242

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
            V PDI+   KAL GG +PI A+L   E+      GTHGSTYGGNPLAC +A    D+I 
Sbjct: 243 GVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN 301

Query: 140 EENMIENAYKMGEIFRSELRS---RLSPDIVPVVRGKGLLNAIVLDKSILEVY-----DV 191
              ++E      + F   L+    +    +   +RG GLL    L       Y     D 
Sbjct: 302 TPEVLEGVKARRQRFVDGLQKINQKY--GVFSEIRGMGLLIGAELK----PQYKGRARDF 355

Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 228
                + G++      +++R +P+L I E ++ EGL 
Sbjct: 356 LNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLA 392

Length = 403

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  189 bits (483), Expect = 6e-58
 Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 9/226 (3%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A ++EPIQGE G ++P +GYL  VR LC ++  L I DEVQTG+GRTGK+ A  +E+V
Sbjct: 232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV 291

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVIL 139
           +PDI+ L KAL GG+ PI A +A +EV   L   P  H +T+GGNPLAC  A+  ++V+L
Sbjct: 292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL 351

Query: 140 EENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSILEV-YDVCIKMK 196
           E+N+   A + G+      R  +R  PD+V   RGKG+L AI    +  E+ Y+   +M 
Sbjct: 352 EQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--EIGYNFASEMF 409

Query: 197 DAGLVTKPISNN--IIRLSPALNITEQELREGLDIIINTINTMAAK 240
              ++     NN   IR+ P L +T ++  + L      +  M   
Sbjct: 410 RQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVS 455

Length = 459

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  184 bits (469), Expect = 4e-56
 Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 10/224 (4%)

Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I AF+VEP+ QG  G       YL+K+R LC +Y VL IADE+ TG GRTGKL A  + 
Sbjct: 195 EIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLFACEHA 254

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPLACKLAMT 133
            V PDI+ L K L+GG  P++A L  DE+              HG TY GNPLAC  A+ 
Sbjct: 255 GVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALA 314

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSILEVYDV 191
           +LD++ EE+ +E   ++    R+ L        V  VR  G + A+ L  D        +
Sbjct: 315 SLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVELVRDVEPYIGAKI 374

Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
                + G++ +P+  N+I L P   IT++EL +    I   I+
Sbjct: 375 QQFFLERGVLLRPL-GNVIYLMPPYIITDEELEKLTAAIKEAID 417

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  179 bits (455), Expect = 2e-54
 Identities = 80/217 (36%), Positives = 124/217 (57%), Gaps = 5/217 (2%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           N  + A M+E +QGE G +  D  +L++V+ LC ++  L I DEVQTG+GRTG L A   
Sbjct: 165 NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQ 224

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDIV + K L  G+ P+ A++   E+     PG+HGST+GGNPLA   A   L VI
Sbjct: 225 FGLDPDIVTVAKGLGNGI-PVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVI 283

Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
            + + +E   + GE F  +L+  L   + V  +RGKGL+  I   +   EV  V  ++++
Sbjct: 284 KQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE---EVAPVIEQLRE 340

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
            GL+      N+IRL P L +T++EL + + ++   +
Sbjct: 341 EGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377

Length = 377

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  179 bits (456), Expect = 4e-54
 Identities = 85/230 (36%), Positives = 135/230 (58%), Gaps = 15/230 (6%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A ++EP+ GE G +VP   +LKK+R +C ++ +L I DEVQTG GRTG+  A     V
Sbjct: 208 VAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV 267

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PDI+ + K ++ GL P+SAV+A  E+M     G+HG+T+GGNP+AC  A+  L+VI EE
Sbjct: 268 VPDIMTIAKGIASGL-PLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE 326

Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK--------SILEVYDVC 192
            +++NA +MG      L   +    ++  VRG GL+  I +          ++ ++ D C
Sbjct: 327 KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC 386

Query: 193 IKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINTMAAK 240
           +   + GL+     N  N++R+ P L +T++E+ EGLDI+   +    AK
Sbjct: 387 L---EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEAK 433

Length = 433

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  178 bits (453), Expect = 4e-54
 Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 3/211 (1%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
              CA +VEPIQGE G V  D  +LK +R LC ++N L I DEVQTG+GRTG+L A  + 
Sbjct: 178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHY 237

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
            V PDI+   KAL GG +PI A+L   E+   L  GTHG+TYGGNPLAC +A   LD++ 
Sbjct: 238 GVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN 296

Query: 140 EENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKD 197
              ++    +  ++F   L       ++   +RGKGLL   VL ++   +         +
Sbjct: 297 TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAE 356

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLD 228
            G++      N++R +P+L I++ ++ EGL 
Sbjct: 357 EGVIALIAGPNVVRFAPSLVISDDDIDEGLA 387

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  176 bits (449), Expect = 4e-53
 Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 9/217 (4%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A   EPIQG+AG +VP + Y KK++ +  ++ +L + DEVQ+GLGRTGK  AI +  V
Sbjct: 205 VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PDI+ LGK L GGL PISA +   E+M +L P  H  T  GNP+A   A+  ++ I E+
Sbjct: 265 EPDIITLGKPLGGGL-PISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK 323

Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVL-------DKSILEVYDVCI 193
           N+++ A K+G   +  L       +++  VRG GL+  + L       +++  E   V  
Sbjct: 324 NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVW 383

Query: 194 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
           +  + GL+    S N++R+ P L I ++ L EGLDI+
Sbjct: 384 RAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDIL 420

Length = 443

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  173 bits (441), Expect = 2e-52
 Identities = 87/218 (39%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
             A  VEP+QGE G       +L+ +RALC +   L + DEVQ GLGRTG L A     V
Sbjct: 168 TAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV 227

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PDI+ L K L+GGL PI AVL  ++V   + PG HGST+ G PL C  A+  LD I + 
Sbjct: 228 EPDIMTLAKPLAGGL-PIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP 286

Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL 200
             + +  K GE  R  LR +L     V  VRG GLL  I LD     + D C   +D+GL
Sbjct: 287 GFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDAC---RDSGL 343

Query: 201 VTKPISN-NIIRLSPALNITEQELREGLDIIINTINTM 237
           +       +++RL P L I+E EL + ++I+ + +  +
Sbjct: 344 LVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381

Length = 382

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  166 bits (421), Expect = 3e-49
 Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 15/218 (6%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +   CA +VEPIQGE G +  D  +L+ +R LC ++N L I DEVQTG+GRTG+L A  +
Sbjct: 181 DDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMH 240

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PD++   KAL GG +PI A+L  ++    +  GTHG+TYGGNPLA  +A   L++I
Sbjct: 241 YGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI 299

Query: 139 LEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
               M+    +  + F   L +      +   +RG GLL   VL+       +   K K 
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNA------EYAGKAKQ 353

Query: 198 -------AGLVTKPISNNIIRLSPALNITEQELREGLD 228
                  AG++      N++R +PALNI+E+E+  GLD
Sbjct: 354 ISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLD 391

Length = 406

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  166 bits (421), Expect = 6e-49
 Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 7/219 (3%)

Query: 10  KQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 69
           K +    K+  ++ A ++EPIQGE G ++P +GYL  VRALC ++  L I DEVQTG+GR
Sbjct: 213 KALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGR 272

Query: 70  TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLA 127
           TGK+ A  +E V+PDI+ L KAL GG+ PI A +A + V   L   P  H +T+GGNPLA
Sbjct: 273 TGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLA 332

Query: 128 CKLAMTALDVILEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSI 185
           C  A+  ++ +LE+N+   A   G+      +  +   PD++   RGKGLL AI    + 
Sbjct: 333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNE 392

Query: 186 LEVYDVCIKMKDAGLVTKPISNN--IIRLSPALNITEQE 222
           +  Y    ++    ++     NN   IR+ P L IT ++
Sbjct: 393 IG-YAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQ 430

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  164 bits (417), Expect = 2e-48
 Identities = 89/231 (38%), Positives = 129/231 (55%), Gaps = 15/231 (6%)

Query: 9   SKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
            KQV A      N+ A ++EPIQGE G +VP +G+L  +   C +  V+FIADEVQTG  
Sbjct: 212 EKQVGAD-----NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFA 266

Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
           RTG   A  +E + PD++   K ++GGL P+SAV    E+M    PG  G TYGGNP+AC
Sbjct: 267 RTGAWFACEHEGIVPDLITTAKGIAGGL-PLSAVTGRAEIMDAPHPGGLGGTYGGNPVAC 325

Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILE 187
             A+ A++ I E++++  A ++  +    LR+     D +  VRG+G + AI L K    
Sbjct: 326 AAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTT 385

Query: 188 VYD------VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
             D      +      AG++  T     N+IRL P L I ++ LREGLD++
Sbjct: 386 EPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVL 436

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  162 bits (412), Expect = 1e-47
 Identities = 87/244 (35%), Positives = 123/244 (50%), Gaps = 25/244 (10%)

Query: 22  ICAFMVEPIQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           I AF+ EPI G AG AVVP  GY K ++ +C  Y++LFIADEV TGLGRTG + A+ +  
Sbjct: 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----GSTYGGNPLACKLAMTALD 136
           V PDI+ LGK L  G  PI+A +  D VM  ++ G+     G T   NPL+   A+  L+
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE 319

Query: 137 VILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAI--VLDKSILEVYD-- 190
            + + N+ E A + GE     L+   + S  I+  VRGKGLL  +  V DK   + +   
Sbjct: 320 YMEKHNLPEKAAEKGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADKKTKQPFSKS 378

Query: 191 ------VCIKMKDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTINTM 237
                 +       GL+  P            + ++P + IT  EL E L I   ++  M
Sbjct: 379 QAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438

Query: 238 AAKK 241
             K 
Sbjct: 439 MQKG 442

Length = 447

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  162 bits (412), Expect = 2e-47
 Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 19/231 (8%)

Query: 22  ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           I A +VEP +QG  G +    GYLK +R LC++YNVLFI DEV TG GRTGK+ A  +E+
Sbjct: 224 IAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHEN 283

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
           V PDI+  GK L+GG  PI+  +  DE+               HG +Y GNPL C +A+ 
Sbjct: 284 VTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALA 343

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
            L++  + N+IE   +  E   ++L    +   V  +R  GL+  I  V +K   E ++ 
Sbjct: 344 NLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEW 403

Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
                  VC + ++ G++T+P+ N I+ + P L  T  EL E L I+   I
Sbjct: 404 TERVGVQVCKRSRELGMLTRPLGNTIVFMPP-LASTIDELDEMLRILYKAI 453

Length = 460

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  158 bits (402), Expect = 5e-46
 Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 21  NICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            + AF+ E + G  AGAV P  GY K++R +C +Y VL I DEV  G+GRTG L A   +
Sbjct: 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEED 258

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTAL 135
            V PD+V + K L  G  PI AVLA D +   +  G+    HG TY G+  AC  A+   
Sbjct: 259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQ 318

Query: 136 DVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
            VI E+ ++ N    GE  R+ LR RL   P  V  +RG+GL   +  V D++    +D 
Sbjct: 319 RVIAEDGLLANVRARGEQLRARLRERLGQHPH-VGDIRGRGLFVGVELVADRATKAPFDP 377

Query: 192 CIKM--------KDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTINT 236
            +K+           GL+  P+   I       + L+P   IT  ++ E ++ + + I+ 
Sbjct: 378 ALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437

Query: 237 MAAK 240
             A 
Sbjct: 438 ALAA 441

Length = 443

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  156 bits (397), Expect = 1e-45
 Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 10/219 (4%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ A ++EP+QGE G +VP  G++  +   C ++ ++FIADEVQTG  RTG + A  +E 
Sbjct: 197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
             PD++   K+L+ GL P+S V    E+M    PG  G TY GNPLAC  A+  L +I  
Sbjct: 257 PEPDLITTAKSLADGL-PLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES 315

Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAG 199
           E +IE A ++G +    L + +     +  VRG G + A+ L        D  +  + A 
Sbjct: 316 EGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIAT 375

Query: 200 --------LVTKPISNNIIRLSPALNITEQELREGLDII 230
                   L+T  +  NIIR  P L I ++ L EGLDI+
Sbjct: 376 AAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDIL 414

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  156 bits (398), Expect = 2e-45
 Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I A +VEP+ G AG +VP  GYL+++R +C ++ +L I DEV TG GR G   A     
Sbjct: 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFG 277

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 133
           V PDI+   K L+ G  P+ AV+A DE+    + G        HG TY  +P+AC   + 
Sbjct: 278 VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLA 337

Query: 134 ALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVL----DKSILEV 188
            LD+  EE++ E A ++   F   + S +  P ++  +R  GL+  I L           
Sbjct: 338 TLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVID-IRNIGLVAGIELAPRPGAPGARG 396

Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
           Y+  +K  + GL+ +  + + I LSP L I + ++ E +D + + +  +A
Sbjct: 397 YEAFMKCFEKGLLVR-YTGDTIALSPPLIIEKAQIDELVDALGDALRAVA 445

Length = 445

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  155 bits (394), Expect = 4e-45
 Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 28/231 (12%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A ++EP+QGE G       ++K +R LC Q+ +L IADEVQTG  RTGKL A+ + +V
Sbjct: 199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV 258

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
             D+  + K L+GG  P++AV    E+M    PG  G TYGGNPL    A   LDVI EE
Sbjct: 259 AADLTTMAKGLAGGF-PLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE 317

Query: 142 NMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
           ++ E A ++G   +   + LR  + P+I   +RG G +NA+       E  D    +  A
Sbjct: 318 DLCERANQLGNRLKQRLASLRETV-PEIAD-IRGPGFMNAV-------EFNDADSGLPSA 368

Query: 199 G---------------LVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
                           L+T  +  N+IR    + I +    E LDI+  +I
Sbjct: 369 EFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419

Length = 425

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  155 bits (392), Expect = 5e-45
 Identities = 85/216 (39%), Positives = 123/216 (56%), Gaps = 17/216 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           ++ A M+EPIQGE G +    G+L +VRALC Q++ L + DE+Q G+GRTG L A   E 
Sbjct: 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQ 246

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PDIV L KAL GG +PI A+LA  +V  T+  G HG+T+GGNPLA  +A  AL  +  
Sbjct: 247 VTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS 305

Query: 141 ENMIENAYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAIVLDK-------SILEVYDV 191
             +  N  +     R+ L   L+ +  +   VRG+GL+   VL         +IL++   
Sbjct: 306 PQIAANVARQSAALRAGL-EALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDL--- 361

Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 227
                + GL+      +++R  PALN+T+ EL +GL
Sbjct: 362 ---AAEHGLLLLQAGPDVLRFVPALNLTDAELADGL 394

Length = 408

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  153 bits (389), Expect = 7e-45
 Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 5/213 (2%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           N N  A M+E +QGE+G +  D  ++K +   C +  +L I DEVQTG+GRTGKL A  +
Sbjct: 163 NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEH 222

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI  L K L+ G+ P+ A+LA   + G    G+HGST+GGN L+   A   LD++
Sbjct: 223 YGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIM 281

Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           L    +E A + G   + +L+  L   + V  VRG G +  I     + ++ +     +D
Sbjct: 282 LTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVE---AARD 338

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDII 230
            GL+      N+IRL P L +T++E+ +G+ I+
Sbjct: 339 KGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAIL 371

Length = 375

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  154 bits (392), Expect = 1e-44
 Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 33/234 (14%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I AF+ EP+QG  G +VP   +   VR +C ++ +L IADEV TG GRTG         V
Sbjct: 214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV 273

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 134
           +PDI+ L K ++ G  P+ A + +  +               HG TY G+P+AC  A+  
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAI--VLDKSILE 187
           LD+++ E++  NA K G      L   L P     ++V  VRGKGL+ A+  V DK+  E
Sbjct: 334 LDIVVREDLPANAAKRGA----YLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATRE 389

Query: 188 -----------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
                      V DV    ++ G++ +P    II LSP L I  +++   +D +
Sbjct: 390 PIDPSKGYANAVADVA---RENGVLVRPSGTKII-LSPPLVIQREDVDRIVDAL 439

Length = 449

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  153 bits (387), Expect = 6e-44
 Identities = 81/219 (36%), Positives = 129/219 (58%), Gaps = 11/219 (5%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I A ++EP+QGE G +VP   ++++VR +CS++ +LF+ADE+QTG  RTGK  AI + DV
Sbjct: 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV 279

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PD++ + K+L  G+ PIS V+   E+M    PG  G TY G+PL C  A+  LD+I +E
Sbjct: 280 VPDLITVSKSLGAGV-PISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKE 338

Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAI--VLDKSILE-----VYDVCI 193
           N+ + A ++G++  +     +   + +  VRG G + A   V D+   E       ++C 
Sbjct: 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICK 398

Query: 194 KMKDAG--LVTKPISNNIIRLSPALNITEQELREGLDII 230
           +    G  L++     N+IR+   L IT+++L EGL II
Sbjct: 399 EANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTII 437

Length = 451

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  152 bits (387), Expect = 9e-44
 Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 17/220 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ AF  EPIQG  G +VP  G+LK +R  C +  +LF+ADEV TG GRTG L A   E 
Sbjct: 215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEG 274

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
           V PD++ + K L+ G  P+ AVL  D V   +  G        HG TY  +P++  + + 
Sbjct: 275 VVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLE 334

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
            L +  E  ++ N  K G  F + L +  +  +V  VRG+GLL A+  V DK+    +D 
Sbjct: 335 VLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDA 394

Query: 192 CIKMKDA--------GLVTKPISNNIIRLSPALNITEQEL 223
            +   D         GLV +   + ++  +PAL  TE E 
Sbjct: 395 ALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEF 434

Length = 459

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  151 bits (384), Expect = 2e-43
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I A +VEP+ G  G ++P  GYL+++R +C ++ +L I DEV TG GR G   A  Y  
Sbjct: 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
           V PD++   K L+ G  P+ AV    E+    + G        HG TY G+PLAC  A+ 
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334

Query: 134 ALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLD----KSILEV 188
            LD+   E ++  A ++   +   L S R +P ++  +R  GL+ A+ L     K     
Sbjct: 335 TLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVID-IRNLGLVGAVELAPRDGKPGKRA 393

Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
           Y+V +K  + GL+ +  + +I+ LSP L I E ++ E  DI+   +    
Sbjct: 394 YEVFLKCFEKGLMIR-YTGDILALSPPLIIEEAQIDELFDILAQALKETI 442

Length = 442

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  150 bits (382), Expect = 3e-43
 Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 28/238 (11%)

Query: 17  KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
           K    I AF+VEP +QG  G +  D  YL ++R +C ++ VL I DE+ TG GRTG L A
Sbjct: 195 KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA 254

Query: 76  IHYEDVRPDIVILGKALSGGLYPISAVLADDEV---------MGTLVPGTHGSTYGGNPL 126
                V PDI+ L K L+GG  P++A L   E+             +   H  +Y  NPL
Sbjct: 255 CEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFM---HSPSYTANPL 311

Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLDKS- 184
           AC  A  +LD+  +E ++E    +       L   R  P +   VR  G + A+ LD+  
Sbjct: 312 ACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVAD-VRVLGAIGAVELDRPV 370

Query: 185 ----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
                  +    +   + G++ +P+  N I L P   IT +E    LD I + I  +A
Sbjct: 371 LERDGPALRAFAL---ERGVLLRPL-GNTIYLMPPYIITAEE----LDRITDAIVEVA 420

Length = 423

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  151 bits (383), Expect = 3e-43
 Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 29/236 (12%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I A ++EPI    G ++P   Y+K V+ +C ++  L I+DEV  G GRTGK        V
Sbjct: 214 IAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV 273

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 134
           +PDI+ + K ++    P+SA     E+      G        H +T+GGNP AC LA+  
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFK-GKGEYEHFRHVNTFGGNPAACALALKN 332

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAI--VLDKSILEVYD 190
           L+++  EN+IE + ++GE+   +L+  L   P +V  +RGKGLL  I  V DK   E  D
Sbjct: 333 LEIMENENLIERSAQLGELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEPAD 391

Query: 191 ------VCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTI 234
                 V    K+ GL+      T    NN++ LSP L I+ +E+      I+ T+
Sbjct: 392 NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIA----FIVGTL 443

Length = 451

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  149 bits (379), Expect = 3e-43
 Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
                A M+EP+QGE G +     +++++RAL  Q+ +L I DEVQTG GRTG L A   
Sbjct: 177 TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYEL 236

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI+ LGK + GG+ P++A+LA  EV      G  G TY GNPL   + +  +  +
Sbjct: 237 SGIEPDIMTLGKGIGGGV-PLAALLAKAEV-AVFEAGDQGGTYNGNPLMTAVGVAVISQL 294

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKD 197
           L    +E     GE  + +L        +   RG+GLL A++L K I  ++ +    M+ 
Sbjct: 295 LAPGFLEGVRARGEYLKEKLLELSEERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQP 354

Query: 198 AGLVTKPISNNIIRLSPALNITEQELRE 225
            GL+      N++R  PALN+T +E+ +
Sbjct: 355 DGLLLNAPRPNLLRFMPALNVTTEEIDQ 382

Length = 395

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  150 bits (380), Expect = 7e-43
 Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 32/234 (13%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I A ++E + G AG +VP  GYL  VR LC ++ ++ IADEV  G GRTGK  AI +  
Sbjct: 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGT----LVPGTHGSTYGGNPLACKLAMTALD 136
           V PD++   K ++ G  P+  V   + +  T      PG  G TY G+PLAC  A+  ++
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPG--GLTYSGHPLACAAAVATIN 331

Query: 137 VILEENMIENAYKMG-EIFRSELRSRLSPD--IVPVVRGKGLLNAIVL------------ 181
            + EE ++ENA ++G E+    LR  L+     V  VRG G+  A+ L            
Sbjct: 332 AMEEEGIVENAARIGAEVLGPGLR-ELAERHPSVGEVRGLGVFWALELVADRETREPLAP 390

Query: 182 ----DKSILEVYDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQELREGLDII 230
                 ++  V   C   K+ GL+  P  N N I + P   +TE E+REGL I+
Sbjct: 391 YGASSAAMAAVKAAC---KERGLL--PFVNGNRIHVVPPCTVTEDEVREGLAIL 439

Length = 451

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  149 bits (378), Expect = 1e-42
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 26  MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85
           ++E IQG+ G + P  GY + +   C ++ +LF  D++Q GLGRTGK  +I + ++ PD+
Sbjct: 212 VIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDL 271

Query: 86  VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 145
           +  GK+L+GG+ P+SA++   E+M +L    H  T G NP++C  A+  +D+I +E++++
Sbjct: 272 MSFGKSLAGGM-PMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQ 330

Query: 146 NAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILE-----VYDVCIKMKD 197
            + + GE  R      +S  + V  VRG GL   I  V DK +          +C    +
Sbjct: 331 RSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE 390

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
            G+V   ++ N++R  P L IT ++L   L+ I      + A K
Sbjct: 391 HGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGK 434

Length = 445

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  148 bits (375), Expect = 5e-42
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I AF+ EP+ G  G +VP   Y +K++A+  +Y++L +ADEV  G GRTG +       +
Sbjct: 219 IAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI 278

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GT--HGSTYGGNPLACKLAMTA 134
           +PDI+++ K LS    P+SAVL +++V   +       GT  HG T  G+P+A  +A+  
Sbjct: 279 KPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALEN 338

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD-- 190
           L +I E +++ NA + G   ++ LR+     +V  VRG GL+ A+  V DK+    ++  
Sbjct: 339 LAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPP 398

Query: 191 ------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                       + G++++ + +  +   P L IT  ++ E +D     ++ +AA 
Sbjct: 399 GKVGARANAAAHEHGVISRAMGDT-LAFCPPLIITAAQVDEMVDRFGRALDDVAAW 453

Length = 460

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  143 bits (363), Expect = 2e-40
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 22/228 (9%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ AF+ EPIQG  G ++P   Y  +++ +C +Y++L +ADEV  G GRTG+     +  
Sbjct: 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFG 278

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 136
           ++PD++ + K L+ G  P+ AV   D V   L+       HG TY G+P+A  +A+  L 
Sbjct: 279 IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR 338

Query: 137 VILEENMIENAY-KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSILEVY---- 189
           ++ +E ++E      G   +  LR      +V  VRG GL+ AI L  DK+  E +    
Sbjct: 339 ILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGG 398

Query: 190 -------DVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
                  D C      GL+ + + + +I +SP L IT  E+ E ++  
Sbjct: 399 GVGTICRDHCFA---NGLIMRAVGDRMI-ISPPLVITHAEIDELVEKA 442

Length = 456

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  142 bits (360), Expect = 3e-40
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 13/221 (5%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQTG GRTG L A+    
Sbjct: 199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V  D+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ 317

Query: 141 ENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVL------DKSILE-VYDV 191
           EN+++ A  +GE  +  L +     P+I   VRG G + AI L       K   +    +
Sbjct: 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHSKPNAKLTAQI 376

Query: 192 CIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDII 230
             + +D GL+        N++R+   L I + ++R+GL+II
Sbjct: 377 VARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

Length = 425

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  139 bits (353), Expect = 7e-39
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I AF+ E ++      VP   Y K+VR +C ++NVL I DE+  G+GRTG+        +
Sbjct: 230 IGAFIAEAVRN-TDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI 288

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS-TYGGNPLACKLAMTALDVILE 140
            PDI+ +GK L GGL PI+A++  D+   T    + G  T+  +PL C  A+  ++VI +
Sbjct: 289 EPDILCIGKGLGGGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ 347

Query: 141 ENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------DKSILEVYD 190
           E ++E      +  R    E++++    ++  VRG GLL  + L       +++  E   
Sbjct: 348 EGLLEKVKADSQFMRERLLEMKAKYP--LIGDVRGIGLLWGVELVTDRHTKERAYDEAEA 405

Query: 191 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
           V  +  + GL  K    N+I+LSP L IT +EL + L I+
Sbjct: 406 VLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAIL 445

Length = 459

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  138 bits (349), Expect = 3e-38
 Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 23/241 (9%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YE 79
           NI AF+ EPI G  G +VP  GY  ++R +C +Y++L+I+DEV TG GR G   A     
Sbjct: 220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTL----VPG---THGSTYGGNPLACKLAM 132
            ++PDI+   K L+ G  P+ AV+  + ++  +      G   THG TY G+P+AC  A+
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAAL 339

Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
             ++++  E + E+  ++G  F   L S     +V  VRG  L+  +  V DK    +  
Sbjct: 340 KNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLP 399

Query: 191 VCI--------KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDI----IINTINTMA 238
             I          ++ GL+ +P+ +  + LSP L IT  ++ E + I    I  T + +A
Sbjct: 400 EDIAIGQRIDRHCQERGLLVRPLEHLCV-LSPPLIITRAQIDEIVAILRAAIEETADELA 458

Query: 239 A 239
           A
Sbjct: 459 A 459

Length = 466

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  136 bits (345), Expect = 5e-38
 Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 10/218 (4%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A ++EPIQGE G  V    ++  +R LC ++ +L IADEVQTG  RTGKL A+ Y DV
Sbjct: 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
           +PD++ + K+L GG  PISAV+   EVM    PG  G TY GNPLA   A+  LDVI EE
Sbjct: 259 KPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE 317

Query: 142 NMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLD--KSILEVYDVCIKMKDA 198
            + + A  +G      L +++ S   +  +R +G + A+  +  ++     +   + +  
Sbjct: 318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQ 377

Query: 199 G------LVTKPISNNIIRLSPALNITEQELREGLDII 230
                  L++  +  N+IR    L I + +  + L+I+
Sbjct: 378 ALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNIL 415

Length = 421

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  136 bits (345), Expect = 7e-38
 Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 16/238 (6%)

Query: 10  KQVPAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
            Q  A  + +P +I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG+G
Sbjct: 213 AQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVG 272

Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
            TG   A     VRPDIV  GK        +  ++A    DEV   +  V     ST+GG
Sbjct: 273 LTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGG 327

Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAIVL 181
           N +    A   L+VI E+ ++ENA + GE   + L       P +V  VRG+GL+ A  L
Sbjct: 328 NLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDL 387

Query: 182 DKSILEVYD-VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
             +     D V  ++ + G++  P     IR  PAL +T +E+   +D +   +  +A
Sbjct: 388 PTT--ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEVA 443

Length = 443

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  135 bits (340), Expect = 1e-37
 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 17/212 (8%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A + EPIQGE G V   + ++K +R L      L IADEVQ+GL RTGK LAI +  V P
Sbjct: 165 AVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEP 223

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           DIV +GK +  G+ P+S  L + +V      G HGST+GGNPLACK     L ++  E +
Sbjct: 224 DIVTMGKGIGNGV-PVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERL 278

Query: 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK 203
           +E A         E    +  + V   RG+GL+  IVL K + +  +   ++++ G +  
Sbjct: 279 VEKA--------GEKFIEIKGERVVTTRGRGLMIGIVLKKPVGKYVE---ELQNRGYLVH 327

Query: 204 PISNNIIRLSPALNITEQELREGLDIIINTIN 235
                +IRL P L I++  + E    I   IN
Sbjct: 328 TAGQRVIRLLPPLIISKDTMEEAKSAIEGVIN 359

Length = 364

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  135 bits (341), Expect = 4e-37
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 19/228 (8%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A  +EP+Q   G   P  GY ++VR +C +Y+VL ++DEV    GR G++        
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY 281

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDV 137
            PDI+   K ++ G  P+ A++A D +    + G     HG T+GG+P++  +A+  LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD----- 190
              E ++++       FR+ L   L   IV  VRG G    I  V DK+  E +      
Sbjct: 342 FEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESE 401

Query: 191 ------VCIKMKDAGLVTKPISNN--IIRLSPALNITEQELREGLDII 230
                 +   + +AGL  +       +++L+P L   ++E  E   I+
Sbjct: 402 RLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQIL 449

Length = 460

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  131 bits (331), Expect = 7e-36
 Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A   EPIQG+AG VVP + + K+++ L  ++ +L + DEVQTG+GRTGK  A  + +V
Sbjct: 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV 282

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
           +PD++I GK ++ G+  +S V+   E+M  L  G+   T   NP+    A   L++I EE
Sbjct: 283 KPDLIIFGKGVASGM-GLSGVIGRKELM-DLTSGSALLTPAANPVISAAAEATLEIIEEE 340

Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVL----DKSILEVY-DVCIKM 195
           N+++NA K+GE  +  L   + S +++  VRGKGL+  + +     K   E+   +C + 
Sbjct: 341 NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRA 400

Query: 196 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
            + GL+  +  +  N+IR++P L IT++   +GL+I+   I    A K
Sbjct: 401 FELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALAGK 448

Length = 457

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  132 bits (333), Expect = 9e-36
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 25/231 (10%)

Query: 16  LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           LK  P  I AF+ EP+ G  G + P   Y +K++A+  +Y++LFIADEV    GR G + 
Sbjct: 254 LKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF 313

Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYGGN 124
                +++PD+V L KALS    PI AVL   E+          +G+     HG TY G+
Sbjct: 314 GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF---AHGFTYSGH 370

Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLD 182
           P++C +A+ AL +  E N+ E+  K+   F+  +++     I+  +RG GL+     V +
Sbjct: 371 PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDN 430

Query: 183 KSILEVYDV--------CIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 225
           KS  + +            + K  G++ + ++ + I +SP L IT +E+ E
Sbjct: 431 KSPNDPFPAEWGVGAYFGAECKKRGMLVR-VAGDNIMMSPPLIITPEEVDE 480

Length = 504

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  127 bits (322), Expect = 1e-34
 Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 22  ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           I A ++EP+ QG  G       YL K R LC QY VL I DE+ TG GRTGKL A+ +  
Sbjct: 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAG 266

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 135
           V PDI+ +GKAL+GG   +SA +  + +  T+  G      HG T+  NPLAC +A  ++
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326

Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI 179
            ++LE    +N  ++    + EL      D V  VR   +L AI
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVR---VLGAI 367

Length = 429

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  125 bits (315), Expect = 1e-33
 Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 22  ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           I A ++EPI QG  G  +    +LK+VR LC +  +L IADE+ TG GRTGKL A  +  
Sbjct: 205 IAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAG 264

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 135
           + PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPLAC +A  +L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASL 324

Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI 179
            ++   +  +    +    R EL       +V  VR   +L AI
Sbjct: 325 SLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVR---VLGAI 365

Length = 428

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  124 bits (314), Expect = 2e-33
 Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 19/238 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I AF+ EP+ G  G V P  GY   ++A+  +Y++L IADEV TG GR G +    +  
Sbjct: 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYG 279

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
           + PD++ + K L+    P+S  +  ++V   L  G+       HG TY G+P+    A+ 
Sbjct: 280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALA 339

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAI--VLDKSILEVYD 190
            LD++  EN++ NA ++G  FR+ LR+      +V  VRG G+L A+  V D+     +D
Sbjct: 340 NLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFD 399

Query: 191 VCIK--------MKDAGLVTKPISN-NIIRLSPALNITEQELREGLDIIINTINTMAA 239
             +K          + G++ + + + +I+  +P L +T  E  E + I  + ++ +  
Sbjct: 400 PALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLG 457

Length = 461

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  121 bits (305), Expect = 4e-32
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 17/229 (7%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A +VE +QGE G  V    +L+++  LC ++++L I D++Q G GRTG   +     + P
Sbjct: 201 AVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260

Query: 84  DIVILGKALSG-GLYPISAVLADDE--VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           DIV L K++SG GL P++ VL   E  V     PG H  T+ GN LA   A  AL+    
Sbjct: 261 DIVTLSKSISGYGL-PMALVLIKPELDVWK---PGEHNGTFRGNNLAFVTATAALEEYWS 316

Query: 141 ENMIENAYK-MGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKM 195
           ++  E   K  GE+ R  L    +  P +   VRG+G++  I      L  ++       
Sbjct: 317 DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAF-- 374

Query: 196 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT 242
            + GL+  T    + +++L P L I E+EL EGLDI+   +  + A++ 
Sbjct: 375 -ENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAEEE 422

Length = 425

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  121 bits (304), Expect = 5e-32
 Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 11  QVPAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 69
           Q  A     P +I  F+ EPIQGE G       +L+ +RALC +++ L I DEVQTG+G 
Sbjct: 207 QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL 266

Query: 70  TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGN 124
           TG   A     V+PDIV  GK        +  ++A    DEV   +  VP    ST+GGN
Sbjct: 267 TGTAWAYQQLGVQPDIVAFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGN 321

Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLD 182
            +    A   L++I EE +++NA   G    + L   +   P +V   RG+GL+ A  L 
Sbjct: 322 LVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP 381

Query: 183 KSILEVYDVCIK-MKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
            +     D  I+ +   G++        IR  P L +T +E+   +D I
Sbjct: 382 ST--ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  120 bits (302), Expect = 1e-31
 Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 32/236 (13%)

Query: 22  ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           I A +VEP IQG  G  +    YLK +R  C +Y V  I DE+  G GRTG + A     
Sbjct: 215 IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAG 274

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEV-------MGTLVPGTHGSTYGGNPLACKLAMT 133
           +RPD + L KAL+GG  P++AVL  D V         TL    H  +Y GNPLAC  A+ 
Sbjct: 275 IRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALA 334

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSI------ 185
            LD+  ++N+IEN   +                V  VR  G++ AI  V DK+       
Sbjct: 335 TLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPW 394

Query: 186 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR-------EGLDI 229
                L+VY   ++    G + +P+ + +  L P + IT +++        EG+DI
Sbjct: 395 QERRGLKVYQHALE---RGALLRPLGSVVYFLPPYV-ITPEQIDFLAEVASEGIDI 446

Length = 466

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  119 bits (300), Expect = 3e-31
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A ++E +QGE G +     +L+ +R +  +  +  I DE+Q+G GRTGK+ A  +  + P
Sbjct: 234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP 293

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           D+V+L KA+ G L P++ V+  +  + T  PG H  T+ GN +A       L  I E  +
Sbjct: 294 DVVVLSKAIGGSL-PLAVVVYREW-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL 351

Query: 144 IENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLL 176
            E+A  MGE  R  LR   R  P +   VRG+GL+
Sbjct: 352 AEHAAAMGERLREHLRQLQRDYPQLGD-VRGRGLM 385

Length = 464

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  117 bits (294), Expect = 2e-30
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 36/230 (15%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A ++E IQGE G       +L+K+R +  ++ +L I DEVQ G  RTGK+ A  +  + P
Sbjct: 228 AVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           DI+++ KA+ GGL P+ AVL   +      PG H  T+ GN LA    +T L ++ EEN+
Sbjct: 288 DIIVMSKAVGGGL-PL-AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL 345

Query: 144 IENAYKMGEIFRSELRSRLSPDIVPV---VRGKGLLNAIVLDKSILEVYD---------- 190
            +NA + GE  +++L   L     P    VRG+GL+  I       E+ D          
Sbjct: 346 AQNAAERGEWLKAQLA-ELQKRY-PCIGNVRGRGLMIGI-------EIVDERQPADAMGS 396

Query: 191 --------VCIKMK--DAGLVTKP--ISNNIIRLSPALNITEQELREGLD 228
                     I+    + GL+ +    + N++RL P L IT+ E  E +D
Sbjct: 397 YPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446

Length = 459

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  116 bits (291), Expect = 3e-30
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 20/228 (8%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A ++E IQGE G V     +L+K+R +  ++++  I DEVQ G GR+G + A  +  + P
Sbjct: 209 AVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP 268

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           D V++ KA+ GGL P+ AVL          P  H  T+ GN LA      AL+   ++N+
Sbjct: 269 DFVVMSKAVGGGL-PL-AVLLIAPEFDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNL 326

Query: 144 IENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL-----DKSILEVYDVCIKMK 196
            +NA + GE   S L    +  P I   VRG+GL+  I++      K     Y    ++ 
Sbjct: 327 AQNAQERGERITSFLDDMIKEHPCI-GNVRGRGLMQGIMIVDERQSKDATGAYPRDCELA 385

Query: 197 DA--------GLV--TKPISNNIIRLSPALNITEQELREGLDIIINTI 234
            A        GL+  T      + RL   + I ++E  EG+      +
Sbjct: 386 AAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAV 433

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  115 bits (290), Expect = 4e-30
 Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 11/214 (5%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
           A ++E +QGE G  V  D +L+++  LC ++++L I D++Q G GRTG   +     + P
Sbjct: 197 AVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256

Query: 84  DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
           DIV L K++SG   P++  L   E +    PG H  T+ GN LA   A  AL+    ++ 
Sbjct: 257 DIVCLSKSISGYGLPLALTLIKPE-LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA 315

Query: 144 IENA-YKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKMKDA 198
            E A  +  EI +  L   ++  P+++  VRG+GL+  I      L  ++        + 
Sbjct: 316 FEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAF---EN 372

Query: 199 GLV--TKPISNNIIRLSPALNITEQELREGLDII 230
           GL+  T   ++ +I+L P L I E+ L++GLDI+
Sbjct: 373 GLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  112 bits (280), Expect = 9e-29
 Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYED 80
           + A + EP+QGE G  V     +  +R LC ++ ++ IADEVQ+G  RTGKL A+ HY D
Sbjct: 199 VAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD 258

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
            +PD++ + K+L+GG+ P+S V+ +  +M    PG  G TY GNPLA   A   L++I +
Sbjct: 259 -KPDLMTMAKSLAGGM-PLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK 316

Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNA 178
           E++ E A ++G+  ++ L       P I   VRG G + A
Sbjct: 317 ESLCERANQLGQRLKNTLIDAKESVPAIA-AVRGLGSMIA 355

Length = 421

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  113 bits (285), Expect = 9e-29
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 26/172 (15%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLK----KVRA---LCSQYNVLFIADEVQTGLGRTGKLLAI 76
            F+ E I   AG +   +GYL+     VRA   +C       IADEVQ G GR G     
Sbjct: 787 FFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVC-------IADEVQVGFGRVGS---- 835

Query: 77  HY-----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGSTYGGNPLACKL 130
           H+     + V PDIV +GK +  G +P+ AV+   E+  +   G  + +T+GGNP++C +
Sbjct: 836 HWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAI 894

Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVL 181
            +  LD+I +E++  NA ++G    + LR      DI+  VRG GL   I L
Sbjct: 895 GLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIEL 946

Length = 1013

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  112 bits (281), Expect = 1e-28
 Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 41/220 (18%)

Query: 21  NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A +VEP +Q  AG  + D  YL+ +RALC +Y V  IADE+  G GRTG   A    
Sbjct: 221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQA 280

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMT 133
            V PD + L K +SGG  P+S VL+ D +              H  +Y GNPLAC+ A+ 
Sbjct: 281 GVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALA 340

Query: 134 ALDVILEENMI-ENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEV 188
            LD+  E++++  NA K      + LR+ L+P      V  +R +G + A          
Sbjct: 341 TLDLFAEDDVLARNARK-----SARLRAALAPLAAHPQVRHLRQRGTIFA---------- 385

Query: 189 YDVCIKMKDA--------------GLVTKPISNNIIRLSP 214
           +DV +    A               L+ +PI   +  + P
Sbjct: 386 FDVALDGDAARTFSRRFFEAALERELLLRPIGTTVYLMPP 425

Length = 453

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  108 bits (270), Expect = 3e-27
 Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 18/172 (10%)

Query: 19  NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
           +  + A ++EPI QG  G    D   ++ VR LC ++++L IADE+ TG GRTG+L A  
Sbjct: 198 DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATL 257

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVM---------GTLVPGTHGSTYGGNPLAC 128
              V PDI+ +GKAL+GG    +A L  D+V          G L+   HG T+  NPLAC
Sbjct: 258 AAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALM---HGPTFMANPLAC 314

Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI 179
            +A  +L++I E  M     K  E   +EL + LSP   +P V    +L AI
Sbjct: 315 AVAHASLEII-ETGMWRKQVKRIE---AELIAGLSPLAHLPGVADVRVLGAI 362

Length = 422

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  108 bits (271), Expect = 3e-27
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 11/143 (7%)

Query: 22  ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           ICA ++EP +Q   G  +    YL++ R LC  +    IADE+ TG GRTG L A     
Sbjct: 237 ICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAG 296

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMTA 134
           V PD++ L K L+GG  P+SAVLA  ++    +  +      H  +Y GNPLAC  A+  
Sbjct: 297 VMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALAT 356

Query: 135 LDVILEENMIEN----AYKMGEI 153
           LD+  ++++I      A +M ++
Sbjct: 357 LDIFADDDVIARNQPTAARMTQL 379

Length = 472

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  105 bits (265), Expect = 2e-26
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I A +VEP+ G  G V P+ G+L+ +R L  ++  L I DEV TG  R     A  Y  V
Sbjct: 201 IAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYGV 259

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVI 138
            PD+  LGK + GGL PI A     E+M  L P        T  GNPLA    +  L+ +
Sbjct: 260 EPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL 318

Query: 139 -LEENMIENAYKMGEIFRSELRSRL 162
             EE + E    +GE     LR+  
Sbjct: 319 MTEEGVYERLDALGERLAEGLRAAA 343

Length = 432

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  104 bits (261), Expect = 1e-25
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 29/229 (12%)

Query: 24  AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY----- 78
            F+ EP+ G AG +    GYL++V A       + IADEVQ G GR G     HY     
Sbjct: 747 GFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-----HYFWGFE 801

Query: 79  -EDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-VPGTHGSTYGGNPLACKLAMTALD 136
            + V PDI+ + K +  G +P+ AV+   E+   L   G   S+ GG+P++C++ M  LD
Sbjct: 802 QQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860

Query: 137 VILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNA--IVLDKSIL-----E 187
           V+ EE + ENA ++G+  ++ L +     P ++  V G GL     +V D+  L     E
Sbjct: 861 VLREEKLQENARRVGDHLKARLEALADRHP-LIGAVHGMGLYLGVELVRDRQTLEPATEE 919

Query: 188 VYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTI 234
              +C ++ + G++ +P  +  NI+++ P L +     RE  D  ++ +
Sbjct: 920 TAAICDRLLELGVIMQPTGDHLNILKIKPPLCLD----RESADFFVDML 964

Length = 972

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 96.9 bits (241), Expect = 4e-23
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+  F+ EP QG  G + P + Y  +++ +C QY+VL  ADEV  G GRTG+  A  +  
Sbjct: 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFG 281

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 136
             PD + + K L+ G  P+  ++    +   LV       HG TY G+P+A  +A+  L 
Sbjct: 282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341

Query: 137 VILEENMIENAYK-MGEIFRSELRSRL-SPDIVPVVRGKGLLNAI 179
            + +E ++       G   +  LR       +V  V+G GL+ A+
Sbjct: 342 ALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAAL 386

Length = 460

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 94.7 bits (237), Expect = 2e-22
 Identities = 52/154 (33%), Positives = 68/154 (44%), Gaps = 21/154 (13%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I A +VEP+ G  G V P  G+L+ +R LC ++  L I DEV TG  R     A  Y  
Sbjct: 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYG 255

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMT 133
           V PD+  LGK + GGL P+ A     E+M  L P       G    T  GNP    LAM 
Sbjct: 256 VTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAG----TLSGNP----LAMA 306

Query: 134 A----LDVILEENMIENAYKMGEIFRSELRSRLS 163
           A    L ++ E    E    + +     L+    
Sbjct: 307 AGLATLKLLKEPGFYEELEALTKRLAEGLKEAAK 340

Length = 426

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 92.8 bits (231), Expect = 7e-22
 Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
             I   +VEP+ G  G V P   +L  +RAL  +Y  L I DEV TG  R     A  Y 
Sbjct: 194 EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYF 252

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGSTYGGNPLACKLAMTALD 136
            V PD+  LGK + GGL P+ A     E+M  L P G      T  GNPLA    +  L 
Sbjct: 253 GVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLK 311

Query: 137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           ++ EE +     ++ +     L   L    +P  
Sbjct: 312 LLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHT 345

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 16/219 (7%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + A +VEPIQ E G       + +K+R +  ++NV FI DEVQTG+G TGK  A  + ++
Sbjct: 252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311

Query: 82  R--PDIVILG-KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
              PD+V    K  + G +        D       P    +T+ G+P    +    +  I
Sbjct: 312 DDPPDMVTFSKKFQTAGYF------FHDPAFRPNKPYRQFNTWMGDPSRALILREIIQEI 365

Query: 139 LEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSILEVYD-VCIKM 195
             ++++EN   +G+   + L    +  P+ +  +RGKG    I  D       D +  K 
Sbjct: 366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKA 425

Query: 196 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           ++ G+         IRL P L   +       DI +  I
Sbjct: 426 RNNGVNIGGCGVKAIRLRPMLVFQKHH----ADIFLEII 460

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 27/151 (17%)

Query: 12  VPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT------ 65
           + A L    ++ A + EP     G V+P+ G+ + +R L  +Y  L + DE  T      
Sbjct: 210 LEAALADG-DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPG 268

Query: 66  GLGRTGKLLAIHYEDVRPDIVILGKALSGGL----YPISAVLAD--DEVMGTLVPGTH-- 117
           G  R   L         PD +++GK ++GG+    Y  SA LA+       +  PG    
Sbjct: 269 GYTRAHGL--------EPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGI 320

Query: 118 GSTYGGNPLACKLAMTALDVILEENMIENAY 148
           G+T   N     LAM A+   L E M E AY
Sbjct: 321 GTTLSANA----LAMAAMRATLAEVMTEAAY 347

Length = 453

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 78.7 bits (194), Expect = 8e-17
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
             +   + EPI    G V+P  G+++ +   C +   L I DEV TG  R  +  A    
Sbjct: 200 HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIY 258

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGSTYGGNPLACKLAMTALD 136
            V+PDI + GK L GGL P +AV+A   +M  L P GT     T  GNPLA      +++
Sbjct: 259 HVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASIN 317

Query: 137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIV 180
           +  E+        + + F       LSP I  ++R +G   ++V
Sbjct: 318 LCREQGFYTQLSTLEQNF-------LSP-IEEMIRSQGFPVSLV 353

Length = 433

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGKLLA 75
             + A +VEPI G  G V P  G+L+ V  L  +   L I DEV T      G    LL 
Sbjct: 199 DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLG 258

Query: 76  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT---LVPGTHGSTYGGNPLACKLAM 132
           +      PD+  LGK + GGL PI A     ++M     L P     T  GNP +    +
Sbjct: 259 VE-----PDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGI 312

Query: 133 TALDVILEENMIENAYKMGEI 153
             L+V+ +E + E   ++G +
Sbjct: 313 ACLEVLQQEGVYEKLDRLGAM 333

Length = 428

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I A ++EP+ G +G +VP   +L+ +R +  +   L + DEV TG  R     A  Y  +
Sbjct: 247 IAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI 305

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTA 134
            PD+  LGK + GGL P+ A     E+M  + P        T  GNP    LAMTA
Sbjct: 306 TPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGTLSGNP----LAMTA 356

Length = 474

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 20/185 (10%)

Query: 14  AKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
                N +I A ++EP + G  G ++ D  + + +  +C    +  I DEV TGL R G 
Sbjct: 577 EASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV 636

Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYG 122
             A      +PDI    K L+GGL P++A LA +EV             L    HG +Y 
Sbjct: 637 ESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL----HGHSYT 692

Query: 123 GNPLACKLAMTAL----DVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLN 177
            +P+ C  A  AL    D     N+I    ++ E++  EL   +S    V  V   G + 
Sbjct: 693 AHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVL 752

Query: 178 AIVLD 182
           A+ LD
Sbjct: 753 ALELD 757

Length = 817

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 22/143 (15%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I   ++EP    A A  P DG+L +VR LC +   LFI DE+ TG  R     A     +
Sbjct: 188 IACVILEP----ATADEPQDGFLHEVRRLCHENGALFILDEMITGF-RWHMRGAQKLYGI 242

Query: 82  RPDIVILGKALSGGLYPISAVLADDEVM--GT----------LVPGTHGSTYGGNPLACK 129
            PD+   GKAL  G + +SA+    E M  G           L+  THG+      LA  
Sbjct: 243 VPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHA--LAA- 298

Query: 130 LAMTALDVILEENMIENAYKMGE 152
            A+  + +  +E++IE  ++ G 
Sbjct: 299 -AIATMAIYRDEDVIERLHEQGA 320

Length = 431

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           +LK+ PN+   ++ P     G +VP    LK++R +  +Y +L + D    G       +
Sbjct: 86  ELKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPGV 141

Query: 75  AIHYEDVRPDIVILG--KALSG 94
            I       D+V     K L G
Sbjct: 142 LIPEG--GADVVTFSLHKNLGG 161

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
KOG1402|consensus	427		100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PLN00144	382	acetylornithine transaminase	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK07046	453	aminotransferase; Validated	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
KOG1404|consensus	442		100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
KOG1401|consensus	433		100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.97
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.96
PLN02822	481	serine palmitoyltransferase	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.95
PLN02955	476	8-amino-7-oxononanoate synthase	99.95
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.95
KOG1403|consensus	452		99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.95
PRK09064	407	5-aminolevulinate synthase; Validated	99.95
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.94
KOG1405|consensus	484		99.94
PRK13393	406	5-aminolevulinate synthase; Provisional	99.94
PRK13392	410	5-aminolevulinate synthase; Provisional	99.92
PRK07682	378	hypothetical protein; Validated	99.92
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.92
PRK07179	407	hypothetical protein; Provisional	99.92
PRK07505	402	hypothetical protein; Provisional	99.92
PRK06225	380	aspartate aminotransferase; Provisional	99.91
PRK07324	373	transaminase; Validated	99.91
PLN00175	413	aminotransferase family protein; Provisional	99.91
PRK07681	399	aspartate aminotransferase; Provisional	99.91
PRK06108	382	aspartate aminotransferase; Provisional	99.91
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.91
PRK06207	405	aspartate aminotransferase; Provisional	99.91
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.91
PRK05957	389	aspartate aminotransferase; Provisional	99.91
PLN02483	489	serine palmitoyltransferase	99.91
PRK06348	384	aspartate aminotransferase; Provisional	99.91
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.91
KOG1360|consensus	570		99.91
KOG1359|consensus	417		99.9
PRK08068	389	transaminase; Reviewed	99.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.9
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.9
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.9
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.9
PRK06290	410	aspartate aminotransferase; Provisional	99.9
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.9
PRK09082	386	methionine aminotransferase; Validated	99.9
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.9
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.9
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.89
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.89
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.89
PRK08960	387	hypothetical protein; Provisional	99.89
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.89
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.89
PLN02187	462	rooty/superroot1	99.89
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.89
PRK12414	384	putative aminotransferase; Provisional	99.89
PRK07683	387	aminotransferase A; Validated	99.89
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.89
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.89
PRK05942	394	aspartate aminotransferase; Provisional	99.88
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.88
PRK07568	397	aspartate aminotransferase; Provisional	99.88
PRK09148	405	aminotransferase; Validated	99.88
PRK08912	387	hypothetical protein; Provisional	99.88
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.88
PRK07777	387	aminotransferase; Validated	99.88
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.88
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.88
PRK08361	391	aspartate aminotransferase; Provisional	99.88
PRK08636	403	aspartate aminotransferase; Provisional	99.88
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.88
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.88
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.88
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.88
PLN02656	409	tyrosine transaminase	99.88
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.88
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.88
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.88
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.88
PRK07337	388	aminotransferase; Validated	99.88
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.87
PRK03321	352	putative aminotransferase; Provisional	99.87
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.87
PRK08175	395	aminotransferase; Validated	99.87
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.87
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.87
PRK08363	398	alanine aminotransferase; Validated	99.87
PRK05839	374	hypothetical protein; Provisional	99.87
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.87
PRK07550	386	hypothetical protein; Provisional	99.87
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.87
PRK05764	393	aspartate aminotransferase; Provisional	99.87
PRK06107	402	aspartate aminotransferase; Provisional	99.87
PTZ00433	412	tyrosine aminotransferase; Provisional	99.87
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.87
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.87
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.87
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.86
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.86
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.86
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.86
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.86
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.86
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.85
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.85
KOG0257|consensus	420		99.85
PLN02721	353	threonine aldolase	99.85
PRK09265	404	aminotransferase AlaT; Validated	99.85
PTZ00377	481	alanine aminotransferase; Provisional	99.85
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.85
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.85
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.84
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.84
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.84
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.84
PRK06855	433	aminotransferase; Validated	99.84
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.84
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.84
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.84
PRK09105	370	putative aminotransferase; Provisional	99.84
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.84
PRK09275	527	aspartate aminotransferase; Provisional	99.84
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.84
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.84
PTZ00376	404	aspartate aminotransferase; Provisional	99.83
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.83
PRK06836	394	aspartate aminotransferase; Provisional	99.83
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.83
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.83
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.83
PRK08637	388	hypothetical protein; Provisional	99.82
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.82
PLN02231	534	alanine transaminase	99.82
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.82
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.82
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.82
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.82
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.82
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.81
PRK07908	349	hypothetical protein; Provisional	99.81
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.81
PLN02397	423	aspartate transaminase	99.8
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.8
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.8
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.8
PRK02948	381	cysteine desulfurase; Provisional	99.79
PRK08354	311	putative aminotransferase; Provisional	99.79
PLN02672	1082	methionine S-methyltransferase	99.79
PRK10534	333	L-threonine aldolase; Provisional	99.79
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.78
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.78
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.78
PLN02409	401	serine--glyoxylate aminotransaminase	99.78
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.78
KOG0634|consensus	472		99.78
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.78
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.77
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.76
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.76
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.75
KOG0259|consensus	447		99.75
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.75
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.75
KOG1368|consensus	384		99.73
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.73
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.73
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.73
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.73
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.73
KOG1357|consensus	519		99.72
PLN02242	418	methionine gamma-lyase	99.71
PRK06460	376	hypothetical protein; Provisional	99.71
KOG1358|consensus	467		99.71
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.7
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.7
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.69
PLN02651	364	cysteine desulfurase	99.68
PRK03080	378	phosphoserine aminotransferase; Provisional	99.67
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.67
KOG0633|consensus	375		99.67
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.66
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.66
PLN02368	407	alanine transaminase	99.65
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.65
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.65
PRK06767	386	methionine gamma-lyase; Provisional	99.64
PRK06234	400	methionine gamma-lyase; Provisional	99.64
PRK08249	398	cystathionine gamma-synthase; Provisional	99.64
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.63
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.63
PRK14012	404	cysteine desulfurase; Provisional	99.62
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.62
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.62
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.61
PRK07049	427	methionine gamma-lyase; Validated	99.61
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.61
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.6
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.6
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.6
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.59
PRK08776	405	cystathionine gamma-synthase; Provisional	99.59
PRK07503	403	methionine gamma-lyase; Provisional	99.57
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.57
PRK08045	386	cystathionine gamma-synthase; Provisional	99.56
KOG0256|consensus	471		99.56
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.56
PRK07811	388	cystathionine gamma-synthase; Provisional	99.55
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.55
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.55
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.54
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.54
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.53
PRK08861	388	cystathionine gamma-synthase; Provisional	99.53
PRK07582	366	cystathionine gamma-lyase; Validated	99.53
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.52
PRK05968	389	hypothetical protein; Provisional	99.52
PLN02509	464	cystathionine beta-lyase	99.52
PRK09028	394	cystathionine beta-lyase; Provisional	99.51
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.5
PRK08574	385	cystathionine gamma-synthase; Provisional	99.5
KOG2862|consensus	385		99.48
PRK08064	390	cystathionine beta-lyase; Provisional	99.48
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.47
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.46
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.46
PLN02724	805	Molybdenum cofactor sulfurase	99.46
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.45
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.45
PRK07050	394	cystathionine beta-lyase; Provisional	99.45
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.44
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.43
PRK07671	377	cystathionine beta-lyase; Provisional	99.42
PRK05967	395	cystathionine beta-lyase; Provisional	99.42
PRK05939	397	hypothetical protein; Provisional	99.4
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.39
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.38
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.37
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.37
PRK08114	395	cystathionine beta-lyase; Provisional	99.37
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.36
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.35
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.35
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.34
PRK12566	954	glycine dehydrogenase; Provisional	99.33
PRK02769	380	histidine decarboxylase; Provisional	99.33
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.32
PRK05367	954	glycine dehydrogenase; Provisional	99.32
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.31
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.3
PRK04311	464	selenocysteine synthase; Provisional	99.28
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.26
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.26
KOG1549|consensus	428		99.24
PLN02271	586	serine hydroxymethyltransferase	99.24
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.21
PLN02880	490	tyrosine decarboxylase	99.2
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.17
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.17
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.17
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.17
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.17
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.16
PRK06434	384	cystathionine gamma-lyase; Validated	99.16
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.09
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.09
PLN03032	374	serine decarboxylase; Provisional	99.08
KOG0053|consensus	409		99.04
PLN02590	539	probable tyrosine decarboxylase	99.02
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.0
PRK05367	954	glycine dehydrogenase; Provisional	98.99
PLN02452	365	phosphoserine transaminase	98.99
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.96
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.95
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.91
PRK13237	460	tyrosine phenol-lyase; Provisional	98.89
PRK12462	364	phosphoserine aminotransferase; Provisional	98.89
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.87
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.85
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.83
PLN02263	470	serine decarboxylase	98.8
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.79
KOG3846|consensus	465		98.79
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.74
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.72
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.62
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.55
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.45
PRK15029	755	arginine decarboxylase; Provisional	98.45
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.37
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.32
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.26
KOG0258|consensus	475		98.24
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.23
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.19
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.12
KOG1383|consensus	491		98.1
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.05
PRK15400	714	lysine decarboxylase CadA; Provisional	97.99
PRK13578	720	ornithine decarboxylase; Provisional	97.97
PRK12566	954	glycine dehydrogenase; Provisional	97.95
KOG2467|consensus	477		97.83
KOG1412|consensus	410		97.81
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.78
KOG2040|consensus	1001		97.68
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	97.65
KOG0628|consensus	511		97.61
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.51
KOG0629|consensus	510		97.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.36
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.3
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	96.8
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	96.31
KOG2040|consensus	1001		94.39
COG4100	416	Cystathionine beta-lyase family protein involved i	94.18
KOG1411|consensus	427		93.85
KOG3843|consensus	432		93.81

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-46  Score=307.92  Aligned_cols=235  Identities=41%  Similarity=0.704  Sum_probs=220.3

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+||||+++ +.+.+++|++|++||+|+.+|-++|+++||++++++|++||+++|.||+|+|+||+|+.|+.+++++
T Consensus       165 g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV  244 (404)
T COG4992         165 GFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGV  244 (404)
T ss_pred             CceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCC
Confidence            467899999999 7777779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||+++++|++||| +|+|.++.++...+.+.++.|++||++||++++++.++++.+.++++.++.+++..+++++| ++
T Consensus       245 ~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L-~~  322 (404)
T COG4992         245 EPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRL-RE  322 (404)
T ss_pred             CCCEEEeeccccCC-ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999 99999999977788899999999999999999999999999999999999999999999999 77


Q ss_pred             cCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         162 LSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       162 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +..  ....++++.|+++++++..+ ..+..+.+.|.++|+++.+.+++.+||.|++..++|++++++++|+++++....
T Consensus       323 l~~~~~~v~~vRG~GLmiGiel~~~-~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         323 LKRRYPLVKEVRGRGLMIGIELKEP-YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             HhhcCCceeeeecceeEEEEEecCc-ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence            754  35788899999999999886 368899999999999999999999999999999999999999999999997654


Q ss_pred             h
Q psy6548         240 K  240 (242)
Q Consensus       240 ~  240 (242)
                      .
T Consensus       402 ~  402 (404)
T COG4992         402 R  402 (404)
T ss_pred             c
Confidence            3

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-41  Score=282.95  Aligned_cols=216  Identities=44%  Similarity=0.759  Sum_probs=201.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      ..+++++++||+|+.+|.++|+++|+++++++|++||+++|+||+|+|||++|+.|+++++|+.||++++||++++| +|
T Consensus       220 ~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G-~P  298 (447)
T COG0160         220 PEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LP  298 (447)
T ss_pred             CCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-Cc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +|.+++.+++++ ..+..+.+||.+||++++++++.|+.++++++.++..+..++++++| .++..  ..+..+++.|.+
T Consensus       299 l~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L-~~l~~~~~~IgdVRG~Glm  376 (447)
T COG0160         299 LSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRL-EELQEKHPLIGDVRGLGLM  376 (447)
T ss_pred             eeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HHHHhhcCceecccccceE
Confidence            999999999999 88888999999999999999999999999999999999999999999 77753  467788999999


Q ss_pred             EEEEecCCc-------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.+++..+.       .....+.++++++|+++..++  .+.+||.|++..++|++|++++.|++++++.
T Consensus       377 ~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         377 IGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             EEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            999998642       457789999999999999887  8999999999999999999999999998864

>KOG1402|consensus

Probab=100.00  E-value=1e-40  Score=262.69  Aligned_cols=231  Identities=60%  Similarity=0.995  Sum_probs=215.4

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+||||.++  ..+++++++++++||+|+..|-++|++.||++.+++|++||+++|.||+|+|++++|+.++.++.++
T Consensus       188 ~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env  267 (427)
T KOG1402|consen  188 VDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV  267 (427)
T ss_pred             ceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc
Confidence            45689999999  7788999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||+++++|+++||++|++.+++++++|-.+.++.|++||.+||++++++.|+|+.+.++.+.++.++++..++.+| +.
T Consensus       268 ~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L-~~  346 (427)
T KOG1402|consen  268 RPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQL-NK  346 (427)
T ss_pred             CCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             cCCC---CCCeEeeeceeEEEEecCCc---hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         162 LSPD---IVPVVRGKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       162 l~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++..   +...+++.|.+..+.+....   .++..++-.|.++|++..|.+++.+||.|++..+++|+++.++.+.+.+.
T Consensus       347 l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  347 LQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            8743   46778899999998877432   67888999999999999999999999999999999999999999988764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-39  Score=278.87  Aligned_cols=235  Identities=37%  Similarity=0.617  Sum_probs=208.1

Q ss_pred             cccccCCCChhh--hcCC-----CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc
Q psy6548           3 LQFPVKSKQVPA--KLKS-----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~-----~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~   75 (242)
                      .+..+||||+++  +.+.     .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..|+
T Consensus       206 ~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a  285 (459)
T PRK11522        206 GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA  285 (459)
T ss_pred             CCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh
Confidence            356789999987  3332     367999999999999999999999999999999999999999999999999999888


Q ss_pred             cccCCCCCCEEEeeccccCCccchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        76 ~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                      ++++++.||++++||++++|++|+|.+++++++++.+.  +..+++||++||+++++++++++.++++++.++++++.++
T Consensus       286 ~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~  365 (459)
T PRK11522        286 CEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDY  365 (459)
T ss_pred             hhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            89999999999999999999779999999999888764  3467889999999999999999999888899999999999


Q ss_pred             HHHHHHhhcCC--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         154 FRSELRSRLSP--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       154 l~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +++.| +++..  . ....+.+.|.++.+++..+ .....+.+.|+++||++.+.  +.+.+|++|++.+|++|++++++
T Consensus       366 l~~~L-~~l~~~~~~~i~~VrG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~  443 (459)
T PRK11522        366 LLDGF-RQLAREYPDLVQEARGKGMLMAIEFVDN-EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLK  443 (459)
T ss_pred             HHHHH-HHHHHhCCCceeeEEeceeEEEEEecCc-hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHH
Confidence            99999 66642  2 4567788999999999875 45678999999999999765  46899999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy6548         229 IIINTINTMAA  239 (242)
Q Consensus       229 ~l~~~l~~~~~  239 (242)
                      +|++++.++.+
T Consensus       444 ~l~~~l~~~~~  454 (459)
T PRK11522        444 AARKALAAMRV  454 (459)
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=3.1e-39  Score=276.21  Aligned_cols=229  Identities=36%  Similarity=0.623  Sum_probs=202.6

Q ss_pred             ccccCCCChhh--hcCC-----CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc
Q psy6548           4 QFPVKSKQVPA--KLKS-----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~-----~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~   76 (242)
                      +..+|++|++.  +.+.     .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..|++
T Consensus       200 ~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~  279 (442)
T TIGR03372       200 FHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFAC  279 (442)
T ss_pred             CEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhh
Confidence            56789999887  3332     3689999999999999999999999999999999999999999999999999998888


Q ss_pred             ccCCCCCCEEEeeccccCCccchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548          77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  154 (242)
Q Consensus        77 ~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l  154 (242)
                      +++++.||++++||++++|++|+|.+++++++++.+.  +..+++||++||+++++++++++.++++++.++.+++.+++
T Consensus       280 e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l  359 (442)
T TIGR03372       280 EHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFL  359 (442)
T ss_pred             hhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999999999999999779999999999988773  34678899999999999999999999888999999999999


Q ss_pred             HHHHHhhcCC--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHH
Q psy6548         155 RSELRSRLSP--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       155 ~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      ++.| +++..  . ....+.+.|.++.+++.++ .....+.+.|+++|+++.+.  +.+.+||.|++.+|++|+++++++
T Consensus       360 ~~~L-~~l~~~~~~~i~~vRG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~  437 (442)
T TIGR03372       360 LDGF-QQLAAEYPDLIIEARGKGLLMAIEFRDN-EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKA  437 (442)
T ss_pred             HHHH-HHHHHhCCCceEEEecceEEEEEEeCCh-HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHH
Confidence            9999 66542  2 3466788999999999876 45678999999999999765  357999999999999999999999


Q ss_pred             HHHHH
Q psy6548         230 IINTI  234 (242)
Q Consensus       230 l~~~l  234 (242)
                      |++++
T Consensus       438 l~~~~  442 (442)
T TIGR03372       438 AKDAL  442 (442)
T ss_pred             HHHhC
Confidence            98763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1e-38  Score=271.94  Aligned_cols=232  Identities=37%  Similarity=0.627  Sum_probs=205.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+||||+++ +...++++++|++||+++++|.++|+.+++++|+++|++||+++|+||+|+|+|++|..++..++++.
T Consensus       161 ~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~  240 (397)
T TIGR03246       161 IKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT  240 (397)
T ss_pred             eEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCC
Confidence            45789999999 55555689999999999999988899999999999999999999999999999999987777888999


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++++.++.+++.++++++++++++.| +++
T Consensus       241 pDi~t~~K~lggG-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L-~~l  318 (397)
T TIGR03246       241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL-EKI  318 (397)
T ss_pred             CCEEEeehhhhCC-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999 99999999999999888766788999999999999999998877789999999999999999 666


Q ss_pred             CC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         163 SP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       163 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..  .....+++.|.++.+++.... .....+++.|+++|+++.+.+.+.+|++|++.+|++++++++++|++++.++
T Consensus       319 ~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       319 NARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             HhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            42  334456778888888876531 3567899999999999998877899999999999999999999999988764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=3.7e-38  Score=269.11  Aligned_cols=231  Identities=39%  Similarity=0.631  Sum_probs=205.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|++|++. +.+.++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++..++.
T Consensus       165 ~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~  244 (398)
T PRK03244        165 VEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVT  244 (398)
T ss_pred             ceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCC
Confidence            56788999988 54445789999999999999999999999999999999999999999999999999886666777889


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ||+++|||++++| +|+|++++++++++.+.+..+..+|+.++++++++.++++.++.+++.++++++++++++.| +.+
T Consensus       245 pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L-~~~  322 (398)
T PRK03244        245 PDVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGI-EAL  322 (398)
T ss_pred             CCEEEEchhhhCC-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-Hhc
Confidence            9999999999999 89999999999999888777888999999999999999998887788999999999999999 766


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +........+.|.+++++++.+  ....+.+.|.++|+++.+.+.+.+|++|++.++++|+++++++|++++.+++
T Consensus       323 ~~~~~~~v~g~g~~~~i~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        323 GHPLVDHVRGRGLLLGIVLTAP--VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             CCCceeeEeeccEEEEEEEecc--HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            5333345667899999999653  5778999999999999987778999999999999999999999999998754

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=8.5e-38  Score=267.05  Aligned_cols=235  Identities=34%  Similarity=0.597  Sum_probs=207.0

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+||||+++ +...++++++|++||+++++|.++|+.+++++|+++|++||+++|+||+|+|+|++|..++.+.+++.
T Consensus       165 ~~~~~~~d~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~  244 (406)
T PRK12381        165 IRHAAYNDLNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT  244 (406)
T ss_pred             eeEeCCCCHHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC
Confidence            46689999999 55555789999999999999988889999999999999999999999999999999987666778899


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ||++++||++++| +|+|++++++++++.+.+..+..|+++++++++++.++++.++.+++.++++++++++++.| +++
T Consensus       245 pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L-~~l  322 (406)
T PRK12381        245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL-NTI  322 (406)
T ss_pred             CCEEEehhhhhCC-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999 99999999999999998877888999999999999999999887789999999999999999 666


Q ss_pred             CC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         163 SP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       163 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ..  .....+++.|.+++++++.+. .....+.+.|+++||++.+.+++.+|++|++.+|++++++++++|+++++++.+
T Consensus       323 ~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        323 NARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFVS  402 (406)
T ss_pred             HhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence            42  233456678999999887641 246788999999999998877789999999999999999999999999998765


Q ss_pred             h
Q psy6548         240 K  240 (242)
Q Consensus       240 ~  240 (242)
                      +
T Consensus       403 ~  403 (406)
T PRK12381        403 R  403 (406)
T ss_pred             c
Confidence            4

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=6.6e-38  Score=272.06  Aligned_cols=218  Identities=31%  Similarity=0.529  Sum_probs=194.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+|
T Consensus       258 ~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~P  337 (504)
T PLN02760        258 PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMP  337 (504)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccc
Confidence            46799999999999999999999999999999999999999999999999999988889999999999999999999679


Q ss_pred             hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      +|.+++++++++.+.+       ..+++||++||+++++++++++.++++++.++++++.+++++.| +.+.. ..+..+
T Consensus       338 igAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~v~~v  416 (504)
T PLN02760        338 IGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGI-KAFSGSPIIGEI  416 (504)
T ss_pred             cceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHhcCCCeeeE
Confidence            9999999999988753       25788999999999999999999998899999999999999999 66642 355678


Q ss_pred             eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+.|.++.+++..+.          .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|++++.++.
T Consensus       417 rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        417 RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIMMSPPLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             EeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999886531          125568899999999998864 6799999999999999999999999998763

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=268.92  Aligned_cols=220  Identities=35%  Similarity=0.576  Sum_probs=197.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+|+
T Consensus       214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi  293 (459)
T PRK05965        214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPM  293 (459)
T ss_pred             CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcce
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999996699


Q ss_pred             heeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548         100 SAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR  171 (242)
Q Consensus       100 g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~  171 (242)
                      |.+++++++++.+..       ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+.
T Consensus       294 ~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~vr  372 (459)
T PRK05965        294 GAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL-DALRAHPLVGDVR  372 (459)
T ss_pred             eEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhhccCCCEEEEe
Confidence            999999999887643       25788999999999999999999999999999999999999999 66642 3456788


Q ss_pred             eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +.|.++.+++..+.          .....+.+.++++|+++.+.+.+.+|+.|++.+|++|+++++++|++++.++...
T Consensus       373 G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~  451 (459)
T PRK05965        373 GRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD  451 (459)
T ss_pred             ecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999885421          1246788899999999998777889999999999999999999999999987554

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.3e-37  Score=259.84  Aligned_cols=218  Identities=41%  Similarity=0.720  Sum_probs=200.0

Q ss_pred             CCEEEEEEcccccC-CCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          20 PNICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~-~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      ++++++++||+..- +|.++|++.|+++++++|++||+++|+||+.+||||+|+.|+.+++++.||+++++|++++||+|
T Consensus       213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~P  292 (449)
T COG0161         213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLP  292 (449)
T ss_pred             ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchh
Confidence            78999999998776 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh-cC-CCCCCeEe
Q psy6548          99 ISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR-LS-PDIVPVVR  171 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~-l~-~~~~~~~~  171 (242)
                      +|.++.++++.+.+...     .|++||++||+++++|++.|++++++++.++.+++..++.++| +. +. .....+++
T Consensus       293 l~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L-~~~l~~~p~VgdVR  371 (449)
T COG0161         293 LSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGL-QAALADHPLVGDVR  371 (449)
T ss_pred             hHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHhcccCCcEEEee
Confidence            99999999988877653     6899999999999999999999999999999999999999999 55 44 34677889


Q ss_pred             eeceeEEEEecCCchh---------HHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         172 GKGLLNAIVLDKSILE---------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +.|++..+++..+ ..         ...+.+.++++|++++|. ++.+=++|++..|++|++++++++.+++++..+.
T Consensus       372 ~~Gli~~iElv~d-~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         372 GLGLIGAIELVAD-KATKTPFEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             ccceEEEEEEecc-cccccchhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998887 33         567889999999999999 6689999999999999999999999999986553

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=4.4e-37  Score=260.22  Aligned_cols=230  Identities=38%  Similarity=0.615  Sum_probs=203.2

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|+||++.  +.+..+++++|++||+++++|..+++++|+++|+++|++||+++|+||+|+||+++|.+++.+.+++
T Consensus       148 ~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~  227 (382)
T PLN00144        148 VTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV  227 (382)
T ss_pred             eEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC
Confidence            56789999998  4566678999999999999888888999999999999999999999999999999998777677899


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||+++|||++++| +|+|++++++++++.+.+..+..|++++|++++++.++++.++++++.++++++++++++.|++.
T Consensus       228 ~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~  306 (382)
T PLN00144        228 EPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRK  306 (382)
T ss_pred             CCCEEEecccccCC-cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 89999999999999998777889999999999999999999988889999999999999998333


Q ss_pred             cCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         162 LSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       162 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.. .....+.+.|+++|+++..   ....+.+.++++||.+.+.+ .+.+|++|++..+++++++++++|++++.++
T Consensus       307 ~~~~~~~~~vrg~G~~~~l~l~~---~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        307 LGGNPHVKEVRGVGLLVGIQLDV---PAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             HhhCCCceeeecCceEEEEEecC---ccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence            332 2345666799999999933   35789999999999999864 4899999999899999999999999998764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=4.8e-37  Score=261.88  Aligned_cols=227  Identities=44%  Similarity=0.818  Sum_probs=198.7

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+||||+++ +...++++++|++||++|++|.+.++++++++|+++|++||+++|+||+|+||+++|..++.+..++.
T Consensus       168 ~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~  247 (396)
T PRK04073        168 IKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT  247 (396)
T ss_pred             ceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC
Confidence            45789999998 55556789999999999999999999999999999999999999999999999998876666667889


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ||++++||++++|.+|+|++++++++++.+....+..++++++++++++.++|+.++++++.++.+++++++++.| +++
T Consensus       248 pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L-~~l  326 (396)
T PRK04073        248 PDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQL-KEI  326 (396)
T ss_pred             CCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-Hhh
Confidence            9999999999954389999999999999888767788999999999999999998877788899999999999999 666


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ........++.|.+++++++.   ...++.++|+++||++.+.+.+.+|++|++.+|+|++++++++|++++
T Consensus       327 ~~~~i~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        327 DNPMIKEVRGRGLFIGVELNE---PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             cCCcccceecceEEEEEEecc---hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            433344556778899998864   367899999999999988777899999999999999999999998875

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=8.9e-37  Score=259.82  Aligned_cols=235  Identities=37%  Similarity=0.591  Sum_probs=208.1

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+||+|++.  +.+..++++++++||+++++|.+.++++|+++|+++|++||+++|+||+|+|||++|..+....+++
T Consensus       168 ~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~  247 (408)
T PRK04612        168 FRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQV  247 (408)
T ss_pred             ceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCC
Confidence            45689999998  4555679999999999999998888899999999999999999999999999999997666666788


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||++++||++++| +|+|++++++++++.+....+..||+++|++++++.++++.++++++.++++++.++++++| ++
T Consensus       248 ~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l-~~  325 (408)
T PRK04612        248 TPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGL-EA  325 (408)
T ss_pred             CCCEEEEcchhcCC-CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999 99999999998888887777888999999999999999999988889999999999999999 66


Q ss_pred             cCC--CCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         162 LSP--DIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       162 l~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +..  .....+.+.|.++.+++..+ ...+..+.+.|.++|+++.+.+.+.+|+.|++..+++|+++++++|++++.++.
T Consensus       326 l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~  405 (408)
T PRK04612        326 LNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYV  405 (408)
T ss_pred             HHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            642  35567889999999998642 134678899999999999988789999999999999999999999999999876


Q ss_pred             hh
Q psy6548         239 AK  240 (242)
Q Consensus       239 ~~  240 (242)
                      ++
T Consensus       406 ~~  407 (408)
T PRK04612        406 AQ  407 (408)
T ss_pred             hc
Confidence            54

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.6e-37  Score=264.66  Aligned_cols=216  Identities=38%  Similarity=0.658  Sum_probs=194.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +|
T Consensus       217 ~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G-~P  295 (443)
T PRK06058        217 ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG-LP  295 (443)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC-Cc
Confidence            47899999999999999999999999999999999999999999999999999888888899999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+.+..+++||++|+++++++.++++.++++++.++.+++++++++.| +++.  ......+.+.|.+
T Consensus       296 i~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~G~~  374 (443)
T PRK06058        296 LSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRL-RALAAEDDRIGDVRGRGAM  374 (443)
T ss_pred             cEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHhhCCcEEeeeccceE
Confidence            999999999999888777889999999999999999999988899999999999999999 6653  2455667899999


Q ss_pred             EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +.+++..+.      .....+.+.|+++|+++.+.+  ++.+|+.|++.+|++++++++++|++++++
T Consensus       375 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        375 IAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             EEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence            999885421      235678888999999998754  479999999999999999999999999875

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=6.4e-37  Score=260.70  Aligned_cols=227  Identities=41%  Similarity=0.675  Sum_probs=199.5

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..+||+|+++ +...++++++|++||+++++|..+++++++++|+++|++||+++|+||+|+||+++|..+..+.+++.|
T Consensus       158 ~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p  237 (389)
T PRK01278        158 DQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTP  237 (389)
T ss_pred             eEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCC
Confidence            3578899999 555556899999999999999899999999999999999999999999999999988766666778899


Q ss_pred             CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      |++++||++++| +|+||+++++++++.+....+..+++.|+++++++.++++.++++++.+++++++++++++| +.+.
T Consensus       238 di~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l-~~l~  315 (389)
T PRK01278        238 DIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL-EGLV  315 (389)
T ss_pred             CEEEEehhccCC-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHH
Confidence            999999999999 99999999999999988877888999999999999999998877778889999999999999 5543


Q ss_pred             C--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         164 P--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       164 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .  . +...+.+.|.++++++..   +..++++.|+++||.+.|++.+.+||+|++.++++++++++++|++++.+
T Consensus       316 ~~~~~~~~~v~g~G~~~~i~~~~---~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        316 DRFPDVIEEVRGKGLLLGLKCVV---PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             hhCCCceeeEecccEEEEEEEec---CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            1  2 344566778888888754   46789999999999999988899999999999999999999999998865

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=3.9e-37  Score=265.45  Aligned_cols=217  Identities=29%  Similarity=0.464  Sum_probs=193.7

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|+++|| +|+
T Consensus       230 ~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~Pl  308 (464)
T PRK06938        230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPL  308 (464)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCC-Cce
Confidence            3799999999999999999999999999999999999999999999999999988999999999999999999999 899


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN  177 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~  177 (242)
                      |.+++++++ +.+.+..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.  ......+.+.|.++
T Consensus       309 sAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~VrG~Glm~  386 (464)
T PRK06938        309 AVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHL-RQLQRDYPQLGDVRGRGLML  386 (464)
T ss_pred             EEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceEE
Confidence            999998775 6666667889999999999999999999988889999999999999999 6653  24567889999999


Q ss_pred             EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .+++..+.             .....+.+.|+++|+++.+.+  .+.+||.|++.+|++|++++++++++++.++..
T Consensus       387 gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~  463 (464)
T PRK06938        387 GVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAVA  463 (464)
T ss_pred             EEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            99985421             124568889999999998754  578999999999999999999999999988654

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=6.6e-37  Score=259.95  Aligned_cols=226  Identities=33%  Similarity=0.585  Sum_probs=196.2

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      +||||+++ +...++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++++++.||+
T Consensus       164 ~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi  243 (395)
T PRK03715        164 AELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDI  243 (395)
T ss_pred             eCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCce
Confidence            46799988 55445689999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             EEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-
Q psy6548          86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-  164 (242)
Q Consensus        86 ~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-  164 (242)
                      +++||++++| +|+|.++++++++. +.+..+++||+++|+++++++++++.++++++.++++++.+++++.| +++.. 
T Consensus       244 ~t~gK~lg~G-~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~  320 (395)
T PRK03715        244 MTLGKGIGGG-VPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL-LELSEE  320 (395)
T ss_pred             eeehhhhhCC-cceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHhhc
Confidence            9999999999 89999999988863 34445788999999999999999999988889999999999999999 66532 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC---CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA---GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .....+.+.|+++.+++..+  ....+.+.+.+.   |+++.+...+.+||+|++.+|++|+++++++|+++++++
T Consensus       321 ~~i~~vrG~Glm~~i~l~~~--~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        321 RGLEGERGEGLLRALLLGKD--IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             CCcCeEEcceeEEEEEecCc--hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            11345678899999999764  344555566665   999987767899999999999999999999999999875

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=5.4e-37  Score=264.29  Aligned_cols=219  Identities=33%  Similarity=0.583  Sum_probs=192.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++||+||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..+.++++|+.||+++++|+++||++|
T Consensus       211 ~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~P  290 (451)
T PRK07678        211 SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLP  290 (451)
T ss_pred             CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcc
Confidence            46899999999999999999999999999999999999999999999999999888888899999999999999988679


Q ss_pred             hheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEe
Q psy6548          99 ISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVR  171 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~  171 (242)
                      +|.+++++++++.+.+      ..+++||++||+++++++++++.++++++.++++++.+++++.|++.+. ......+.
T Consensus       291 i~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr  370 (451)
T PRK07678        291 LSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIR  370 (451)
T ss_pred             eeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9999999999887754      2478999999999999999999998888999999999999999933333 23556788


Q ss_pred             eeceeEEEEecCCc--------hhHHHHHHHHHHCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI--------LEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.|.++.+++..+.        .....+...|+++|+++.+.+      .+.+|++|++.+|++||+++++++++++.++
T Consensus       371 g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        371 GKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            99999999985321        235678899999999997642      3789999999999999999999999999865

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=5.1e-37  Score=264.27  Aligned_cols=218  Identities=33%  Similarity=0.563  Sum_probs=193.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+|
T Consensus       211 ~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~P  290 (449)
T PRK07481        211 PDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVP  290 (449)
T ss_pred             CCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcC
Confidence            46899999999999999999999999999999999999999999999999999988888999999999999999999669


Q ss_pred             hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCe
Q psy6548          99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPV  169 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~  169 (242)
                      +|.+++++++++.+.+       ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++..  .....
T Consensus       291 i~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~  369 (449)
T PRK07481        291 LGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGL-QPLKERFELVGD  369 (449)
T ss_pred             ceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhhcCCCeEE
Confidence            9999999999887753       25788999999999999999999988889999999999999999 66542  45677


Q ss_pred             EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.|.++.+++..+.          .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|+++++++.
T Consensus       370 vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        370 VRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             EeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            8899999999985321          134578888999999998874 4699999999999999999999999998754

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=1.2e-36  Score=259.90  Aligned_cols=233  Identities=36%  Similarity=0.585  Sum_probs=203.1

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+||||++. +...++++++|++||+++++|..+|+++++++|+++|++||+++|+||+|+|++++|.+++...+++
T Consensus       165 ~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~  244 (403)
T PRK05093        165 DITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGV  244 (403)
T ss_pred             CcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC
Confidence            357789999999 5544568999999999999998888999999999999999999999999999998887666567788


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++++.+..+++.++++++++++++.| +.
T Consensus       245 ~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L-~~  322 (403)
T PRK05093        245 TPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL-QK  322 (403)
T ss_pred             CCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999 99999999999999988766778889999999999999998877788899999999999999 66


Q ss_pred             cCC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         162 LSP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       162 l~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +..  .....+++.|.++|+.++... .+..++++.|+++||++.+.+.+.+|++|++.++++++++++++|++++.++
T Consensus       323 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        323 INQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             HHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            542  233456677899999987541 2567899999999999998877899999999999999999999999998764

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=262.79  Aligned_cols=219  Identities=30%  Similarity=0.534  Sum_probs=193.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++|+.||+++++|+++|||+|
T Consensus       218 ~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~P  297 (461)
T PRK07482        218 PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAP  297 (461)
T ss_pred             CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccc
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999569


Q ss_pred             hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCe
Q psy6548          99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPV  169 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~  169 (242)
                      +|.+++++++++.+..       ..+++||++||++++++.++++.++++++.++.+++.+++++.| +++.  ...+..
T Consensus       298 i~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~  376 (461)
T PRK07482        298 LSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARL-RAAFGDHPLVGE  376 (461)
T ss_pred             cceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHhcCCCEEE
Confidence            9999999998876642       24788999999999999999999999999999999999999999 5543  245567


Q ss_pred             EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.|.++.+++..+.          .....+...|+++|+++.+. +++.+|+.|++.+|++|+++++++|++++.++.
T Consensus       377 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~  456 (461)
T PRK07482        377 VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL  456 (461)
T ss_pred             EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999999986421          02467889999999998653 357899999999999999999999999998763

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=1e-36  Score=262.33  Aligned_cols=218  Identities=35%  Similarity=0.591  Sum_probs=192.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++++.||+++++|++++||+|+
T Consensus       213 ~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pi  292 (451)
T PRK06062        213 STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPL  292 (451)
T ss_pred             CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCc
Confidence            68999999999999999999999999999999999999999999999999999888899999999999999999996699


Q ss_pred             heeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhhcCC--CCCCeEeeec
Q psy6548         100 SAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG-EIFRSELRSRLSP--DIVPVVRGKG  174 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~--~~~~~~~~~~  174 (242)
                      |.+++++++++.+...  .+++||++||+++++++++|+.++++++.++.+++. .++++.| +++..  .....+.+.|
T Consensus       293 gav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L-~~l~~~~~~v~~vrG~G  371 (451)
T PRK06062        293 GGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGL-RELAERHPSVGEVRGLG  371 (451)
T ss_pred             EEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHhcCCcEEeEeccc
Confidence            9999999999888643  477899999999999999999998888999999998 5899999 66532  3455788899


Q ss_pred             eeEEEEecCCc-------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         175 LLNAIVLDKSI-------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       175 ~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .++.+++..+.             .....+.+.|+++|+++.+. .+.+|++|++.+|++|+++++++|++++.++..
T Consensus       372 l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~  448 (451)
T PRK06062        372 VFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVREGLAILDAALAVADA  448 (451)
T ss_pred             cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence            99999885321             02457899999999998875 578999999999999999999999999988653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=9.2e-37  Score=260.66  Aligned_cols=226  Identities=32%  Similarity=0.549  Sum_probs=198.6

Q ss_pred             CCCChhh--hcCC--CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           8 KSKQVPA--KLKS--NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         8 ~~~d~~~--~~~~--~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      ++||+++  +.+.  .+++++|++||+ ++.+|.++|+++||++|+++|++||+++|+||+|+|||++|.+++.+++++.
T Consensus       187 ~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~  266 (428)
T PRK07986        187 DERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA  266 (428)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC
Confidence            3567776  3343  468999999996 8888888999999999999999999999999999999999998888899999


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      ||++++||+++|||+++|.+++++++++.+...     .+++||++||+++++++++++.++++++.++++++.+++++.
T Consensus       267 PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~  346 (428)
T PRK07986        267 PDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREE  346 (428)
T ss_pred             CCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999999977999999999999888653     377899999999999999999998888999999999999999


Q ss_pred             HHhhcC-CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         158 LRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       158 l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      | +.+. ......+.+.|.++.+++..+ .....+.+.|+++|+++.+.+ +.+|++|++..|++|+++++++|++++++
T Consensus       347 l-~~l~~~~~i~~vRg~Gl~~~ve~~~~-~~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        347 L-APLRDAPMVADVRVLGAIGVVETTRP-VNMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             H-HHHhcCCCEEeEeccceEEEEEeCCc-ccHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9 6663 234456788899999999765 456789999999999998874 68999999999999999999999998864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.5e-36  Score=259.01  Aligned_cols=218  Identities=30%  Similarity=0.506  Sum_probs=194.0

Q ss_pred             CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+
T Consensus       219 ~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~  298 (453)
T PRK06943        219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYL  298 (453)
T ss_pred             CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcc
Confidence            47899999999 59999999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      |+|.+++++++++.+..      ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+
T Consensus       299 Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L-~~l~~~~~v~~v  377 (453)
T PRK06943        299 PLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAAL-APLAAHPQVRHL  377 (453)
T ss_pred             cceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHhcCCCEEeE
Confidence            99999999999887753      24788999999999999999999998899999999999999999 66642 334467


Q ss_pred             eeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+.|.++.+++..+.    .....+.+.++++|+++.+.+ +.+||+|++.+|++|+++++++|+++++++.
T Consensus       378 rG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~  448 (453)
T PRK06943        378 RQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLDATL  448 (453)
T ss_pred             eccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999996321    124678899999999998874 5799999999999999999999999998863

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=4.1e-36  Score=260.29  Aligned_cols=232  Identities=52%  Similarity=0.893  Sum_probs=200.9

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      +..+||||++.  +.+.  .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++.+.+
T Consensus       203 ~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~  282 (474)
T PLN02624        203 HLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWE  282 (474)
T ss_pred             ceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhc
Confidence            56789999988  4443  3679999999999999999999999999999999999999999999999999987776777


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      ++.||++++||++++|++|+|++++++++++.+.+..++.|+++++++++++.++++.++++++.++..++.+.+++.| 
T Consensus       283 ~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L-  361 (474)
T PLN02624        283 EVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQL-  361 (474)
T ss_pred             CCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-
Confidence            8999999999999977689999999999888887777888999999999999999998887778888999999999999 


Q ss_pred             hhcCCC---CCCeEeeeceeEEEEecCC---chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         160 SRLSPD---IVPVVRGKGLLNAIVLDKS---ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       160 ~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +.+...   ......+.|.++.+.+..+   .....++++.|.++||++.|.+++.+||+|++.+|++++++++++|+++
T Consensus       362 ~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~  441 (474)
T PLN02624        362 QKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDV  441 (474)
T ss_pred             HHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence            665421   2334567888888887643   1346789999999999999988899999999999999999999999988


Q ss_pred             HHH
Q psy6548         234 INT  236 (242)
Q Consensus       234 l~~  236 (242)
                      +..
T Consensus       442 l~~  444 (474)
T PLN02624        442 LEH  444 (474)
T ss_pred             HHH
Confidence            765

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-36  Score=261.36  Aligned_cols=219  Identities=38%  Similarity=0.652  Sum_probs=194.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|.+++.+++++.||++++||++++| +|
T Consensus       205 ~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G-~p  283 (433)
T PRK08117        205 PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LP  283 (433)
T ss_pred             CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-Cc
Confidence            46899999999999999999999999999999999999999999999999999877777889999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+....+++|+++||++++++.++++.++.+++.++++++.+++++.| +.+.  ......+++.|.+
T Consensus       284 igav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~Gl~  362 (433)
T PRK08117        284 LSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERL-EVLKEKHPVIGDVRGIGLM  362 (433)
T ss_pred             ceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhcCCceeeeecCCcE
Confidence            999999999998887777888999999999999999999987889999999999999999 6664  2344567888999


Q ss_pred             EEEEecCC-----chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKS-----ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +++++..+     ......+.+.|+++||++.+.+  .+.+|++|++.+|++++++++++|+++++++.+
T Consensus       363 ~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        363 IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence            99888532     1346678899999999997643  479999999999999999999999999988754

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=3.5e-36  Score=259.65  Aligned_cols=219  Identities=31%  Similarity=0.538  Sum_probs=194.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||+++||++|
T Consensus       216 ~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P  295 (460)
T PRK06105        216 PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQP  295 (460)
T ss_pred             CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCccc
Confidence            46899999999999999999999999999999999999999999999999999988888999999999999999988679


Q ss_pred             hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      +|.+++++++++.+.+       ..+++|+++||+++++++++++.++++++.++++++.+++++.| +++.. ..+..+
T Consensus       296 ~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L-~~l~~~~~v~~v  374 (460)
T PRK06105        296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARL-RALADHPLVGEV  374 (460)
T ss_pred             ceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEEE
Confidence            9999999999887653       13678999999999999999999998899999999999999999 66642 455678


Q ss_pred             eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .+.|.++.+++..+.          .....+...++++|+++.+.+ +.+|++|++..|++|+++++++|+++++++.+
T Consensus       375 rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~  452 (460)
T PRK06105        375 RGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMG-DTLAFCPPLIITAAQVDEMVDRFGRALDDVAA  452 (460)
T ss_pred             EecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999885321          123568888999999998864 68999999999999999999999999988754

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=5.1e-36  Score=258.21  Aligned_cols=219  Identities=32%  Similarity=0.550  Sum_probs=193.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||+++|||+|
T Consensus       217 ~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~P  296 (456)
T PRK07480        217 ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIP  296 (456)
T ss_pred             CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCcc
Confidence            46899999999999999999999999999999999999999999999999999988889999999999999999999669


Q ss_pred             hheeEeChhhhhccC--C--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHhhcCC-CCCCeEee
Q psy6548          99 ISAVLADDEVMGTLV--P--GTHGSTYGGNPLACKLAMTALDVILEENMIENA-YKMGEIFRSELRSRLSP-DIVPVVRG  172 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~-~~~~~~l~~~l~~~l~~-~~~~~~~~  172 (242)
                      +|.+++++++++.+.  .  ..+++||++||++++++.++|+.++++++.++. +++.+++++.| +++.. ..+..+.+
T Consensus       297 i~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l-~~l~~~~~i~~vrG  375 (456)
T PRK07480        297 MGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL-RELADHPLVGEVRG  375 (456)
T ss_pred             ceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHhhcCCCeeeEEe
Confidence            999999999988772  2  257889999999999999999999988899999 59999999999 55642 45667889


Q ss_pred             eceeEEEEecCCch----------hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         173 KGLLNAIVLDKSIL----------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       173 ~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .|.++.+++..+..          ....+.+.++++|+++.+. .+.+|++|++..|++|+++++++|++++.++.+
T Consensus       376 ~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        376 VGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             ecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999854310          1246778899999999876 478999999999999999999999999998754

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-36  Score=258.40  Aligned_cols=221  Identities=34%  Similarity=0.571  Sum_probs=194.4

Q ss_pred             CCCEEEEEEccccc-CCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+++ .+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+
T Consensus       197 ~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~  276 (443)
T PRK07483        197 PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQ  276 (443)
T ss_pred             CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCcc
Confidence            36899999999998 57889999999999999999999999999999999999999998999999999999999999955


Q ss_pred             chheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-C-CCCCCeEe
Q psy6548          98 PISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-S-PDIVPVVR  171 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l-~-~~~~~~~~  171 (242)
                      |+|.+++++++++.+...    .+++||++||++++++.++++.++++++.++.+++.+++++.| +++ . ......+.
T Consensus       277 Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vR  355 (443)
T PRK07483        277 PIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL-RERLGQHPHVGDIR  355 (443)
T ss_pred             ccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHhcCCCeeeEe
Confidence            999999999998877542    4788999999999999999999999999999999999999999 554 2 23456788


Q ss_pred             eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.|.++.+++..+.          .....+.+.++++|+++.+.+       ++.+||.|++..|++|+++++++|++++
T Consensus       356 G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l  435 (443)
T PRK07483        356 GRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAI  435 (443)
T ss_pred             ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999885421          124678899999999997653       3689999999999999999999999999


Q ss_pred             HHHhhh
Q psy6548         235 NTMAAK  240 (242)
Q Consensus       235 ~~~~~~  240 (242)
                      .++..-
T Consensus       436 ~~~~~~  441 (443)
T PRK07483        436 DAALAA  441 (443)
T ss_pred             HHHHhh
Confidence            987543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=7.5e-36  Score=254.99  Aligned_cols=230  Identities=62%  Similarity=1.025  Sum_probs=200.0

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      +..+||||+++  +.+.  .+++++|++||+++++|.+.|+++++++|+++|++||+++|+||+|+|+|++|.+++.+..
T Consensus       165 ~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~  244 (401)
T TIGR01885       165 FKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHE  244 (401)
T ss_pred             ceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhc
Confidence            56789999988  3343  3679999999999999999999999999999999999999999999999999987666667


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      ++.||++++||++++|++|+|++++++++++.+....+..++++++++++++.++++.++++++.++.+++++++++.| 
T Consensus       245 ~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L-  323 (401)
T TIGR01885       245 NVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQL-  323 (401)
T ss_pred             CCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-
Confidence            8889999999999966589999999999999887766777889999999999999999887778889999999999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++++.......++.|.++.+.++.+.  ....++.+.|.++||.+.+.+.+.+||+|++.++++++++++++|++.+
T Consensus       324 ~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       324 KKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             HhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            77764444456678899988876541  2578899999999999999888899999999999999999999998875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=6.2e-36  Score=255.85  Aligned_cols=217  Identities=31%  Similarity=0.557  Sum_probs=193.4

Q ss_pred             CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+ ++.+|.++|+++|+++++++|++||+++|+||+|+|||++|.+++.+++++.||++++||+++||++
T Consensus       204 ~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~  283 (429)
T PRK06173        204 GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYL  283 (429)
T ss_pred             CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCcc
Confidence            468999999996 9999999999999999999999999999999999999999998888889999999999999999967


Q ss_pred             chheeEeChhhhhccCC-----CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEe
Q psy6548          98 PISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVR  171 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~  171 (242)
                      +++.+++++++++.+.+     ..+++|++++|+++++++++++.++++++.++++++.+++++.| +.+. ......+.
T Consensus       284 p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L-~~~~~~~~v~~vR  362 (429)
T PRK06173        284 TLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQEL-APAAEFDSVAEVR  362 (429)
T ss_pred             ccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCeeeee
Confidence            99999999998887753     24777899999999999999999988888999999999999999 5552 22334567


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.|+++.+++... .....+.+.|+++|+++.+.+ +.+||.|++..|++|+++++++|++++.++.
T Consensus       363 g~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~  427 (429)
T PRK06173        363 VLGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPFG-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY  427 (429)
T ss_pred             ccceEEEEEeCCc-ccHHHHHHHHHHCCeEEEecC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            8899999999775 456789999999999998875 6999999999999999999999999998754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=6.8e-36  Score=257.82  Aligned_cols=218  Identities=29%  Similarity=0.518  Sum_probs=193.1

Q ss_pred             CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+
T Consensus       234 ~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~  313 (472)
T PRK08742        234 PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFL  313 (472)
T ss_pred             CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCC
Confidence            47899999999 69999999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      |+|.+++++++++.+..      ..+++||++||++++++.++++.++++++.++.++..+++++.+ +.+.. ..+..+
T Consensus       314 Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~-~~~~~~~~i~dv  392 (472)
T PRK08742        314 PLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLA-AQIGEHPHVADV  392 (472)
T ss_pred             CcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHhcCCCeeeE
Confidence            99999999999887642      24788999999999999999999999999999999999999877 55542 355678


Q ss_pred             eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+.|.++.+++..+.          .....+.+.++++|+++.+.+ +.+||.|++..|++|+++++++|+++++++.
T Consensus       393 RG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        393 RQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG-DVLYWMPPYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             eccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            899999999986431          013567888999999998874 7999999999999999999999999998764

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.8e-36  Score=256.93  Aligned_cols=232  Identities=32%  Similarity=0.535  Sum_probs=198.5

Q ss_pred             ccccCCCC-----hhh--hcCC--CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc
Q psy6548           4 QFPVKSKQ-----VPA--KLKS--NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL   73 (242)
Q Consensus         4 ~~~~~~~d-----~~~--~~~~--~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~   73 (242)
                      .+.+|+||     ++.  +.+.  .+++++|++|| +++.+|.++|+++|+++|+++|++||+++|+||+|+|||++|..
T Consensus       173 ~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~  252 (423)
T PRK05964        173 TAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL  252 (423)
T ss_pred             EeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence            35677777     666  3332  46899999999 69999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCEEEeeccccCCccchheeEeChhhhhccCCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          74 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG------THGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        74 ~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                      ++++.+++.||++++||++++|++|+|++++++++++.+...      .+++||++|+++++++.++++.++.+++.+++
T Consensus       253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~  332 (423)
T PRK05964        253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV  332 (423)
T ss_pred             hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            777888999999999999998868999999999998877531      46788899999999999999999888899999


Q ss_pred             HHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHH
Q psy6548         148 YKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR  224 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~  224 (242)
                      +++.+++++.| +++.. .......+.|.++.+++.++.  .....+.+.|.++||++.+.+ +.+|++|++.+|++||+
T Consensus       333 ~~~g~~l~~~l-~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~edId  410 (423)
T PRK05964        333 AALSAGLAEGL-EPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITAEELD  410 (423)
T ss_pred             HHHHHHHHHHH-HhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHH
Confidence            99999999999 66642 223345678899999987641  136789999999999998864 78999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINTM  237 (242)
Q Consensus       225 ~~~~~l~~~l~~~  237 (242)
                      +++++|+++++++
T Consensus       411 ~~v~~l~~al~~~  423 (423)
T PRK05964        411 RITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998763

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=9.5e-36  Score=257.18  Aligned_cols=218  Identities=32%  Similarity=0.607  Sum_probs=193.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc-cCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..+.++ ++++.||+++++|++++||+
T Consensus       218 ~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~  297 (466)
T PRK07036        218 ADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQ  297 (466)
T ss_pred             CCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCcc
Confidence            47899999999999999999999999999999999999999999999999999877777 68999999999999999966


Q ss_pred             chheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548          98 PISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV  169 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  169 (242)
                      |+|.+++++++++.+.+       ..+++||++||+++++++++++.++++++.++++++.+++++.| +.+.. ..+..
T Consensus       298 Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~v~~  376 (466)
T PRK07036        298 PLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERL-ASLRELPLVGD  376 (466)
T ss_pred             ccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhccCCCEEE
Confidence            99999999999887652       24678999999999999999999988899999999999999999 66642 45567


Q ss_pred             EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.|.++.+++..+.          .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|++++.++.
T Consensus       377 vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~  454 (466)
T PRK07036        377 VRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIEETA  454 (466)
T ss_pred             EEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999999985421          124568889999999998864 6899999999999999999999999998764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.6e-36  Score=257.56  Aligned_cols=217  Identities=32%  Similarity=0.541  Sum_probs=193.9

Q ss_pred             CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++|| +++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++|||+
T Consensus       212 ~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~  291 (466)
T PRK07030        212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYL  291 (466)
T ss_pred             CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcc
Confidence            47899999999 79999999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             chheeEeChhhhhccC-------CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548          98 PISAVLADDEVMGTLV-------PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV  169 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  169 (242)
                      |+|.+++++++++.+.       ...+++||++||++++++.++++.++++++.++.+++.+++++.| +++.. .....
T Consensus       292 Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L-~~l~~~~~v~~  370 (466)
T PRK07030        292 PLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEAT-AHLADHPHVAE  370 (466)
T ss_pred             cceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHhcCCCEEE
Confidence            9999999999987763       235789999999999999999999999899999999999999999 66642 34566


Q ss_pred             EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.+.|.++.+++..+.          .....+.+.++++|+++.+.+ +.+|+.|++.+|++|+++++++|+++++++
T Consensus       371 vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        371 VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG-SVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             eEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            8899999999985431          013568889999999998864 689999999999999999999999999987

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=5.5e-36  Score=255.77  Aligned_cols=213  Identities=31%  Similarity=0.573  Sum_probs=188.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccC-Cccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~-g~~~   98 (242)
                      +++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||++++ | +|
T Consensus       193 ~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~p  271 (412)
T TIGR02407       193 DLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LP  271 (412)
T ss_pred             CceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCc-cc
Confidence            578999999999999998999999999999999999999999999999999998888888999999999999997 9 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeec
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-ILEENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKG  174 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~  174 (242)
                      +|++++++++ +.+.+..+.+||++|+++++++.++++. ++++++.+++++++++++++| +.+..  . ....+++.|
T Consensus       272 igav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l-~~l~~~~~~~~~~vrg~G  349 (412)
T TIGR02407       272 LALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL-DRIVAEYPELIKQVRGRG  349 (412)
T ss_pred             eeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHhhCCCceEeeecce
Confidence            9999998876 6666566888999999999999999995 767779999999999999999 55432  1 345677889


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++|++++.. .....+.+.|+++||++.+.+  .+.+|++|++.+|++|+++++++|++++++
T Consensus       350 l~~~l~l~~~-~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       350 LMQGIECGDG-DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             eEEEEEecCh-HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            9999999875 567789999999999998654  478999999999999999999999998853

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.2e-35  Score=251.90  Aligned_cols=226  Identities=36%  Similarity=0.612  Sum_probs=196.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+||||+++ +...++++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||+++|.++....+++.
T Consensus       149 ~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~  228 (377)
T PRK02936        149 FTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD  228 (377)
T ss_pred             ceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC
Confidence            45689999998 55556789999999999999988889999999999999999999999999999998876666677888


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh-
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR-  161 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~-  161 (242)
                      ||++++||++++| +|+|++++++++++.+....+..++++++++++++.++++.+..+++.++++++++++++.| ++ 
T Consensus       229 ~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L-~~~  306 (377)
T PRK02936        229 PDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL-QEE  306 (377)
T ss_pred             CcEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999 89999999999999988776778889999999999999998876778899999999999999 54 


Q ss_pred             cCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         162 LSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       162 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.. .......+.|+++|++++.+   ...+.+.|.++||++.+.+.+++|++|++.++++++++++++|++++
T Consensus       307 ~~~~~~~~~v~~~g~~~~i~~~~~---~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        307 LEHLECVKNIRGKGLMIGIECTEE---VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             HhhCCcEEeEeecceEEEEEecch---HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            321 23334456788999998763   67889999999999999888999999999999999999999998753

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9.9e-36  Score=256.04  Aligned_cols=220  Identities=30%  Similarity=0.568  Sum_probs=196.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..++.+++++.||++++||++++| +|
T Consensus       205 ~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p  283 (445)
T PRK08593        205 ADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MP  283 (445)
T ss_pred             CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC-cc
Confidence            36899999999999999999999999999999999999999999999999999877778889999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+....+.+|++++|+++++++++++.++++++.++++++.+++++.| +++.  ......+.+.|.+
T Consensus       284 ~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrG~Gl~  362 (445)
T PRK08593        284 MSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRF-DQWVSKYNFVGDVRGYGLS  362 (445)
T ss_pred             cEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhcCCcEEEEeccceE
Confidence            999999999999887666778999999999999999999988889999999999999999 6653  2456678889999


Q ss_pred             EEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +.+++..+.       .....+.+.|+++||++.+.+.+.+|++|++.+|++|+++++++++++++++.++
T Consensus       363 ~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  433 (445)
T PRK08593        363 IGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAG  433 (445)
T ss_pred             EEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence            998885421       2356789999999999987667899999999999999999999999999887553

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-35  Score=253.10  Aligned_cols=219  Identities=36%  Similarity=0.617  Sum_probs=194.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|||++|..++++.+++.||++++||++++| +|
T Consensus       196 ~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G-~p  274 (425)
T PRK07495        196 PQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG-FP  274 (425)
T ss_pred             CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC-cc
Confidence            46899999999999988888999999999999999999999999999999999877888889999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+.+..+.+||++++++++++.++++.++++++.++++++++++++.| +.+..  .....+.+.|.+
T Consensus       275 igav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG~Gl~  353 (425)
T PRK07495        275 LAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRL-ASLRETVPEIADIRGPGFM  353 (425)
T ss_pred             ceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhhCCCeeeeecCceE
Confidence            999999999999888777889999999999999999999988889999999999999999 66542  234566788999


Q ss_pred             EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +|+++....      .....+.+.++++|+++.+.+  ++.+||.|++..|++++++++++|+++++++..
T Consensus       354 ~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~  424 (425)
T PRK07495        354 NAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEASA  424 (425)
T ss_pred             EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            999985431      124578888999999997653  489999999999999999999999999988653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=1.7e-35  Score=252.87  Aligned_cols=232  Identities=47%  Similarity=0.768  Sum_probs=199.0

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+||+|++. +...++++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|+|++|..+..+..++
T Consensus       168 ~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~  247 (401)
T PRK00854        168 GFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI  247 (401)
T ss_pred             CeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC
Confidence            456789999998 5555568999999999999999999999999999999999999999999999988887555556788


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||++++||++++|++|+|++++++++++.+.+..+..+++.+++.++++.++++.++.+++.++++++++++++.| +.
T Consensus       248 ~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L-~~  326 (401)
T PRK00854        248 EADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGL-RS  326 (401)
T ss_pred             CCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-Hh
Confidence            89999999999988679999999999999888766777888999999999999998877778899999999999999 66


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +.........+.|.++.+.+..+.....++++.|.++||.+.+.+.+.+|++|++.++++++++++++|++++.
T Consensus       327 ~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        327 IRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             hccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            65322334466788888776443245788999999999999887778999999999999999999999998763

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-35  Score=256.41  Aligned_cols=216  Identities=31%  Similarity=0.501  Sum_probs=192.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++||+||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +|+
T Consensus       224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi  302 (459)
T PRK06931        224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPL  302 (459)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCC-cce
Confidence            5699999999999999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN  177 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~  177 (242)
                      |.+++++++ +.+.+..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.  ......+.+.|.++
T Consensus       303 ~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~vrG~Glm~  380 (459)
T PRK06931        303 AVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQL-AELQKRYPCIGNVRGRGLMI  380 (459)
T ss_pred             eeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHhCCCeEeEecCceEE
Confidence            998887664 6666667889999999999999999999998899999999999999999 6663  34567888999999


Q ss_pred             EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+++..+.             .....+.+.|+++|+++.+.+  ++.+|+.|++.+|++|+++++++|++++.++.
T Consensus       381 giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~  456 (459)
T PRK06931        381 GIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAV  456 (459)
T ss_pred             EEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            99985421             124568888999999997653  57899999999999999999999999998754

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=9e-36  Score=255.52  Aligned_cols=217  Identities=31%  Similarity=0.571  Sum_probs=189.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccC-Cccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~-g~~~   98 (242)
                      +++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..+.++++++.||++++||++++ | +|
T Consensus       197 ~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G-~p  275 (425)
T PRK09264        197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYG-LP  275 (425)
T ss_pred             CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCc-cc
Confidence            479999999999999988999999999999999999999999999999999988788888999999999999996 8 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeec
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL-DVILEENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKG  174 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~  174 (242)
                      +|++++++++. .+.+..++.||++|+++++++.+++ +.++++++.++++++++++++.| +.+..  . ....+++.|
T Consensus       276 igav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l-~~l~~~~~~~~~~vrg~G  353 (425)
T PRK09264        276 MALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL-EEIAAKYPGLGAEVRGRG  353 (425)
T ss_pred             eEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhCCCceecceecc
Confidence            99999998873 5555567889999999999998999 56666679999999999999999 55531  2 224567889


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++++++++.. .....+.+.++++|+++.+.+  ...||++|++.+|++++++++++|+++++++.+.
T Consensus       354 l~~~i~l~~~-~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        354 MMQGIDFGDG-ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE  420 (425)
T ss_pred             cEEEEEecCh-HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999765 567889999999999998754  4799999999999999999999999999886543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=1.3e-35  Score=255.38  Aligned_cols=216  Identities=28%  Similarity=0.475  Sum_probs=192.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      ++++++++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||++++||++++| +|+
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pi  283 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPL  283 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCC-ccc
Confidence            6899999999999999999999999999999999999999999999999999988888899999999999999999 999


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN  177 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~  177 (242)
                      |+++++++ ++.+....+++||++||++++++.++++.++++++.++.+++++++++.| +++.  ...+..+.+.|.++
T Consensus       284 gav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrG~Gl~~  361 (442)
T TIGR00709       284 AVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFL-DDMIKEHPCIGNVRGRGLMQ  361 (442)
T ss_pred             EEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceEE
Confidence            99999987 45555556789999999999999999999988899999999999999999 6653  24567889999999


Q ss_pred             EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+++..+.             .....+...|+++|+++.+.+  ++.+|+.|++.+|++|++++++++++++.++.
T Consensus       362 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~  437 (442)
T TIGR00709       362 GIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEAL  437 (442)
T ss_pred             EEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99985431             125678888999999997653  68999999999999999999999999998763

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.4e-35  Score=254.81  Aligned_cols=217  Identities=34%  Similarity=0.623  Sum_probs=190.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++++++.||++++||++++|++|
T Consensus       213 ~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P  292 (442)
T PRK13360        213 ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIP  292 (442)
T ss_pred             CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccc
Confidence            36899999999999999999999999999999999999999999999999999988888999999999999999988789


Q ss_pred             hheeEeChhhhhccCCC-------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          99 ISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      +|.+++++++++.+...       .+++||+++|++++++.++++.++++++.++.+++.+++++.| +++.. .....+
T Consensus       293 ~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~v  371 (442)
T PRK13360        293 MGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDAL-HSLRDAPHVIDI  371 (442)
T ss_pred             eEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCeeee
Confidence            99999999998876532       3678999999999999999999988889999999999999999 66642 234566


Q ss_pred             eeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+.|.++.+.+....    ..+.++.+.|+++|+++.+.+ +.+||+|++.+|++|+++++++|+++++++
T Consensus       372 rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        372 RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG-DILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             eccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC-CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            788888887775321    235678889999999998764 689999999999999999999999999765

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.2e-36  Score=255.11  Aligned_cols=215  Identities=29%  Similarity=0.507  Sum_probs=192.1

Q ss_pred             CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      ++++++|++||+ ++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++|||+
T Consensus       198 ~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~  277 (422)
T PRK05630        198 DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFM  277 (422)
T ss_pred             hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCcc
Confidence            478999999996 9999999999999999999999999999999999999999998888899999999999999999966


Q ss_pred             chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      ++|++++++++++.+..      ..+++||++||++++++.++++.++++++.++++++.+++++.| +.+.. .....+
T Consensus       278 p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~v~~v  356 (422)
T PRK05630        278 SFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGL-SPLAHLPGVADV  356 (422)
T ss_pred             ccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHhhcCCCeeee
Confidence            99999999999887753      14788999999999999999999988888899999999999999 55542 234567


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+.|.++.+++..+ .....+.+.++++|+++.+.+ +.+||.|++..|++|+++++++|++++.+
T Consensus       357 Rg~Gl~~~ie~~~~-~~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        357 RVLGAIGVVEMEQP-VDMEEATQAAVDHGVWLRPFG-RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             eccccEEEEEECCc-ccHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            78899999999765 456789999999999998874 79999999999999999999999998864

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=3.1e-35  Score=251.33  Aligned_cols=236  Identities=58%  Similarity=0.961  Sum_probs=201.9

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..++|+|+++  +.+..+++++|++||++|++|.+.++++++++|+++|++||+++|+||+|+|+|++|..+..+.+++
T Consensus       159 ~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~  238 (400)
T PTZ00125        159 FELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV  238 (400)
T ss_pred             ceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC
Confidence            45678899999  4454578999999999999999999999999999999999999999999999998887666666788


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .||++++||++++|++|+|++++++++++.+.......+++.+++.++++.++++.++++++.++.+++.+.+++.| ++
T Consensus       239 ~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l-~~  317 (400)
T PTZ00125        239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGL-KE  317 (400)
T ss_pred             CCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HH
Confidence            99999999999977469999999999999887766777888999999999999998887788889999999999999 55


Q ss_pred             c-CC-CCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         162 L-SP-DIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       162 l-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      + .. .......+.|.++++.++.+ ......+.+.|.++||.+.|.+.+.+|++|++.++++++++++++|+++++++.
T Consensus       318 l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~  397 (400)
T PTZ00125        318 LLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFD  397 (400)
T ss_pred             HHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            4 21 22333466788888888642 246778999999999999998889999999999999999999999999998875


Q ss_pred             hh
Q psy6548         239 AK  240 (242)
Q Consensus       239 ~~  240 (242)
                      .+
T Consensus       398 ~~  399 (400)
T PTZ00125        398 SN  399 (400)
T ss_pred             cC
Confidence            44

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2e-35  Score=254.70  Aligned_cols=219  Identities=33%  Similarity=0.544  Sum_probs=191.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++ .++|+++|+++|+++|++||+++|+||+++|||++|..|+++++|+.||++++||++++|++|
T Consensus       227 ~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P  305 (459)
T PRK06082        227 EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVP  305 (459)
T ss_pred             CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCc
Confidence            3689999999999984 678999999999999999999999999999999999988889999999999999999988569


Q ss_pred             hheeEeChhhhhccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548          99 ISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL  175 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~  175 (242)
                      +|.+++++++++..... .+ +|+++||++++++.++++.++++++.++++++.+++++.| +++..  ..+..+.+.|.
T Consensus       306 ~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG~Gl  383 (459)
T PRK06082        306 IAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERL-LEMKAKYPLIGDVRGIGL  383 (459)
T ss_pred             ceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHhhCCCeeeeeeccc
Confidence            99999998877554322 24 7999999999999999999988889999999999999999 66632  45677889999


Q ss_pred             eEEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         176 LNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       176 ~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++.+++..+.       .....+...++++|+++.+.+.+.+|++|++.+|+++++++++++++++.++.++
T Consensus       384 ~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~  455 (459)
T PRK06082        384 LWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKICQD  455 (459)
T ss_pred             eeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence            9999986421       1245688889999999988777899999999999999999999999999987543

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.6e-35  Score=246.68  Aligned_cols=218  Identities=38%  Similarity=0.603  Sum_probs=190.1

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|+||++. +...++++++|++||+++++|..+++++|+++++++|++||+++|.||+++|+ ++|..++++++++.
T Consensus       144 ~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~  222 (364)
T PRK04013        144 FKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE  222 (364)
T ss_pred             cEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC
Confidence            45678999988 54445799999999999999999999999999999999999999999999999 99998888899999


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ||+++++|++++| +|+|.++.++++    .+..+++||++||++++++.++++.++++++.++.++.   ++ .+    
T Consensus       223 PDiv~~gK~lggG-~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~---l~-~l----  289 (364)
T PRK04013        223 PDIVTMGKGIGNG-VPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK---FI-EI----  289 (364)
T ss_pred             CCEEEecccccCC-ceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH---HH-Hh----
Confidence            9999999999999 899999887664    33458899999999999999999999988888777664   22 22    


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .......+++.|.++.+++..+   ...+.+.++++|+++.+.+.+.+||.|++..|++++++++++|+++++++.
T Consensus       290 ~~~~v~~vRG~Gl~~gve~~~~---~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~  362 (364)
T PRK04013        290 KGERVVTTRGRGLMIGIVLKKP---VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL  362 (364)
T ss_pred             ccCcceeeeeCcEEEEEEeCCc---HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence            2234567889999999999754   567889999999999988778999999999999999999999999998753

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=9.1e-36  Score=256.25  Aligned_cols=221  Identities=37%  Similarity=0.613  Sum_probs=193.6

Q ss_pred             CCEEEEEEcccccC-CCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          20 PNICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~-~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      +++++|++||++++ +|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||++++||+|
T Consensus       198 ~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~P  277 (447)
T PRK06917        198 EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTP  277 (447)
T ss_pred             CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcc
Confidence            57999999999985 56889999999999999999999999999999999999988888999999999999999999559


Q ss_pred             hheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEee
Q psy6548          99 ISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRG  172 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~  172 (242)
                      +|.+++++++++.+.+.    .+++|+++||++++++.++++.++++++.++++++.+++++.| +++..  .....+.+
T Consensus       278 i~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG  356 (447)
T PRK06917        278 IAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGL-QKVQQQSTIIGDVRG  356 (447)
T ss_pred             eEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhcCCCEEEEee
Confidence            99999999998877542    3577999999999999999999988889999999999999999 66642  45667889


Q ss_pred             eceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       173 ~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .|.++.+++..+.          .....+.+.|+++|+++.+.+       .+.+|++|++.+|++|+++++++|++++.
T Consensus       357 ~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~  436 (447)
T PRK06917        357 KGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE  436 (447)
T ss_pred             cceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence            9999999885320          235678899999999997652       57899999999999999999999999999


Q ss_pred             HHhhhc
Q psy6548         236 TMAAKK  241 (242)
Q Consensus       236 ~~~~~~  241 (242)
                      ++.++.
T Consensus       437 ~~~~~~  442 (447)
T PRK06917        437 EMMQKG  442 (447)
T ss_pred             HHHHhc
Confidence            886543

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=2.3e-35  Score=252.59  Aligned_cols=215  Identities=30%  Similarity=0.549  Sum_probs=191.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+++||+++|.+++++++++.||++++||++++| +|
T Consensus       196 ~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G-~p  274 (421)
T PRK09792        196 AKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG-MP  274 (421)
T ss_pred             CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC-Cc
Confidence            46899999999999999888999999999999999999999999999999999888888888999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+.+..+.+|+++|++++++++++++.++++++.++++++.+++++.| +.+..  .....+.+.|.+
T Consensus       275 igav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l-~~l~~~~p~v~~vrG~Gl~  353 (421)
T PRK09792        275 LSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL-IDAKESVPAIAAVRGLGSM  353 (421)
T ss_pred             eEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhCCCcceecccceE
Confidence            999999999999888777889999999999999999999988888899999999999999 66532  345677888999


Q ss_pred             EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +|+++.+..      .....+.+.++++|+++.+.+  ++.+||.|++..+++++++++++|++++.
T Consensus       354 ~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        354 IAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             EEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            999997531      245778999999999997543  58999999999999999999999999875

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-35  Score=253.05  Aligned_cols=218  Identities=35%  Similarity=0.617  Sum_probs=193.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+.+++++.||+++++|++++| +|
T Consensus       220 ~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~p  298 (457)
T PRK05639        220 PDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MG  298 (457)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC-Cc
Confidence            57899999999999999999999999999999999999999999999999999988888899999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|++++++++++ .....+.+|+++||+++++++++++.++++++.++.+++.+++++.| +++.  ......+.+.|.+
T Consensus       299 i~av~~~~~i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~VrG~Gl~  376 (457)
T PRK05639        299 LSGVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRL-LEMKESFEVIGDVRGKGLM  376 (457)
T ss_pred             ceeEEehHHHHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HHHHHhCCCEEeeccceeE
Confidence            999999999988 33344678999999999999999999998899999999999999999 6653  2456678899999


Q ss_pred             EEEEecCCc-----hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKSI-----LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.+++..+.     .....+.+.|+++|+++.+.+  .+.+||.|++.+|++|+++++++|+++++++.+
T Consensus       377 ~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~  446 (457)
T PRK05639        377 IGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALA  446 (457)
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            999885421     235678999999999998764  589999999999999999999999999988653

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=3.8e-35  Score=253.21  Aligned_cols=219  Identities=26%  Similarity=0.478  Sum_probs=191.0

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.+.|+++|+++|+++|++||+++|+||+++|||++|..++++++|+.||+++++|++++||+|
T Consensus       220 ~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~P  299 (460)
T PRK12403        220 AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVP  299 (460)
T ss_pred             CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccc
Confidence            36899999999999999999999999999999999999999999999999999988889999999999999999999669


Q ss_pred             hheeEeChhhhhccCC----CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhhcC--CCCCCeEe
Q psy6548          99 ISAVLADDEVMGTLVP----GTHGSTYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELRSRLS--PDIVPVVR  171 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~-~~~~~l~~~l~~~l~--~~~~~~~~  171 (242)
                      +|.+++++++++.+..    ..+++||++||+++++++++|+.++++++.++++ ++.+++++.| +++.  ......+.
T Consensus       300 iga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L-~~l~~~~~~i~~vr  378 (460)
T PRK12403        300 MGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL-REVFGDHPLVGEVQ  378 (460)
T ss_pred             eEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHhcCCCEEeEe
Confidence            9999999998887743    2367899999999999999999998888899996 8999999999 5543  24567788


Q ss_pred             eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.|.++.+++..+.          .....+...++++|+++.+.+ +.+|++|++..|++|++++++.|++++.++.+
T Consensus       379 G~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~  455 (460)
T PRK12403        379 GAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR  455 (460)
T ss_pred             ecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999985431          013345677789999998763 56999999999999999999999999998754

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=3.4e-35  Score=252.53  Aligned_cols=216  Identities=33%  Similarity=0.590  Sum_probs=190.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.+.|+++|+++++++|++||+++|+||+++|||++|..+.++++++.||++++||++++|++|+
T Consensus       217 ~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi  296 (445)
T PRK09221        217 STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPM  296 (445)
T ss_pred             CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccc
Confidence            68999999999999999999999999999999999999999999999999999888889999999999999999887899


Q ss_pred             heeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548         100 SAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR  171 (242)
Q Consensus       100 g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~  171 (242)
                      |.+++++++++.+..       ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+.
T Consensus       297 ~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~vr  375 (445)
T PRK09221        297 GAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAV-HSLKGLPHVIDIR  375 (445)
T ss_pred             eeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhhccCCCEEEEe
Confidence            999999998887643       23678999999999999999999988889999999999999999 66632 3345677


Q ss_pred             eeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.|.++.+++....    ....++.+.|+++|+++.+. ++.+||+|++.+|++|+++++++|++++.++
T Consensus       376 g~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        376 NIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             cCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            88889888875421    23467889999999999876 4789999999999999999999999999875

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=2.9e-35  Score=253.92  Aligned_cols=219  Identities=39%  Similarity=0.662  Sum_probs=193.8

Q ss_pred             CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|+++||++
T Consensus       221 ~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~  300 (460)
T PRK06916        221 HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYL  300 (460)
T ss_pred             CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCcc
Confidence            47899999999 69999999999999999999999999999999999999999998898999999999999999999966


Q ss_pred             chheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548          98 PISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV  169 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  169 (242)
                      |+|.+++++++++.+.+       ..+++|+++||++++++.++++.++++++.++++++.+++++.| +++.. .....
T Consensus       301 Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~  379 (460)
T PRK06916        301 PIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQL-EDLFALKHVGD  379 (460)
T ss_pred             ccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEE
Confidence            99999999998876542       34778999999999999999999988889999999999999999 66643 34457


Q ss_pred             EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.+.|.++.+++..+.          .....+...|+++|+++.+.+ +.+||.|++.+|++|+++++++|++++.++..
T Consensus       380 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~  458 (460)
T PRK06916        380 IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-NTIVFMPPLASTIDELDEMLRILYKAISDVTE  458 (460)
T ss_pred             eecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence            8889999999886431          013578899999999998864 68999999999999999999999999988654

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9e-35  Score=249.82  Aligned_cols=219  Identities=38%  Similarity=0.650  Sum_probs=194.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|++++.++|++||+++|+||+|+||+++|..++..++++.||++++||++++| +|
T Consensus       202 ~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G-~p  280 (443)
T PRK08360        202 AEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LP  280 (443)
T ss_pred             CCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC-ce
Confidence            37899999999999999999999999999999999999999999999999999876767789999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+....+.+|+++++++++++.++++.++++++.++++++.+++++.| +++.  ......+.+.|.+
T Consensus       281 igav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrg~Gl~  359 (443)
T PRK08360        281 ISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRL-EEMKKKHELIGDVRGIGLM  359 (443)
T ss_pred             eEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceE
Confidence            999999999999888766788999999999999999999988889999999999999999 6552  2355677889999


Q ss_pred             EEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.+++..+.       ..+..+.+.|+++|+++.+...+.+|++|++.+|++|++++++++++++.++.+
T Consensus       360 ~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        360 IGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             EEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999885431       235678999999999998766789999999999999999999999999988754

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=250.19  Aligned_cols=219  Identities=28%  Similarity=0.525  Sum_probs=190.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|||++|..++.+++++.||++++||++++|++|
T Consensus       219 ~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~p  298 (460)
T PRK06541        219 PDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSP  298 (460)
T ss_pred             CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccc
Confidence            46899999999999999999999999999999999999999999999999999988888899999999999999999459


Q ss_pred             hheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEeee
Q psy6548          99 ISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGK  173 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~  173 (242)
                      +|++++++++++.+.+.    .+++|+++||+++++++++++.++.+++.++++++++++++.| +++.. .....+.+.
T Consensus       299 igav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~v~~vrg~  377 (460)
T PRK06541        299 LGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATL-EKLLDLPIVGDVRGD  377 (460)
T ss_pred             eeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEEEEec
Confidence            99999999988776532    4667999999999999999999988889999999999999999 66642 344567789


Q ss_pred             ceeEEEEecCCc--------h-----hHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         174 GLLNAIVLDKSI--------L-----EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       174 ~~~~~~~~~~~~--------~-----~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |.++.+++..+.        .     ....+.+.|+++|+++.+.  +.+.+||+|++.+|++|+++++++|++++.++.
T Consensus       378 Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        378 GYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW  457 (460)
T ss_pred             ceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999985421        0     1135778999999999864  457899999999999999999999999998754

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.2e-34  Score=247.28  Aligned_cols=228  Identities=41%  Similarity=0.696  Sum_probs=197.0

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..+||+|+++ +...++++++|++||+++++|..+++++++++|+++|++||+++|+||+|+||+++|..++.+..++.|
T Consensus       165 ~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~p  244 (396)
T PRK02627        165 IYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEP  244 (396)
T ss_pred             eEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCC
Confidence            5578889998 554467899999999999999888899999999999999999999999999998888766666778889


Q ss_pred             CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      |+++|||++++| +|+||+++++++++.+....+..+++.++++++++.++++.++.+++.++++++.+.+++.| +++.
T Consensus       245 di~t~sK~~~~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~  322 (396)
T PRK02627        245 DIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKL-RELL  322 (396)
T ss_pred             CEEEEcchhhCC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHH
Confidence            999999999999 99999999999999888766778899999999999999998877778899999999999988 5542


Q ss_pred             C--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         164 P--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       164 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .  .......+.|.++|+.+..   +..++++.|.++||++.+.+.+.+|++|++.++++++++++++|+++++++
T Consensus       323 ~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        323 EKYPGIKEVRGLGLMIGIELDR---PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             HhCCCeeeeccCcEEEEEEecC---cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence            1  2233455678899998833   578899999999999999877899999999999999999999999988753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=9.3e-35  Score=249.16  Aligned_cols=215  Identities=37%  Similarity=0.632  Sum_probs=189.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|
T Consensus       195 ~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~p  273 (420)
T TIGR00700       195 ANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG-LP  273 (420)
T ss_pred             CCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC-cc
Confidence            57899999999999999999999999999999999999999999999999999877778889999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +||+++++++++.+.+..+.+|+++|+++++++.++++.++++++.+++++.++++++.| +.+..  .....+.+.|.+
T Consensus       274 ig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~G~~  352 (420)
T TIGR00700       274 LSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRL-TTLKAVDPRIGDVRGLGAM  352 (420)
T ss_pred             eEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhhCCCEEEeeccceE
Confidence            999999999999888777889999999999999999999888889999999999999999 55532  234456778999


Q ss_pred             EEEEecCC------chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKS------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       177 ~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +++++...      ......+.+.+.++||++.|++  ++.+||+|++..+++++++++++|+++++
T Consensus       353 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       353 IAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            99987421      1335678888889999998864  57999999998999999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-34  Score=248.11  Aligned_cols=215  Identities=35%  Similarity=0.603  Sum_probs=188.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|..+++++|+++|+++|++||+++|+||+|+||+++|..++..++++.||++++||++++| +|
T Consensus       196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G-~p  274 (421)
T PRK06777        196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG-MP  274 (421)
T ss_pred             CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC-Cc
Confidence            36899999999999999889999999999999999999999999999999999877778889999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +|++++++++++.+.+..+.+|+++|+++++++.++++.++++++.++++++++++++.| +++..  .....+.+.|.+
T Consensus       275 igav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~G~~  353 (421)
T PRK06777        275 ISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVL-EKAKASCPAIVDIRARGSM  353 (421)
T ss_pred             eEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHhCCCeEEecCceEE
Confidence            999999999999888777888999999999999999999888889999999999999999 66532  344556788888


Q ss_pred             EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +.+++..+.      .....+.+.++++|+++.+++  ++.+||.|++..+++++++++++|++.+.
T Consensus       354 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        354 VAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            888765320      234567777889999998864  47999999999999999999999998874

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=6.1e-35  Score=241.30  Aligned_cols=234  Identities=27%  Similarity=0.394  Sum_probs=198.4

Q ss_pred             ccccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           2 SLQFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      .+++.+||||+++  +.+.+  +++++||+||+.++.|.+.|.++|++.|+++|++||++||.||+++|| +.+.+++..
T Consensus       177 ~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~  255 (432)
T COG0001         177 KHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQG  255 (432)
T ss_pred             ccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCCccccc
Confidence            4678999999999  55553  699999999999999999999999999999999999999999999998 565567888


Q ss_pred             cCCCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q psy6548          78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEI  153 (242)
Q Consensus        78 ~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~  153 (242)
                      .+++.||+.+++|.+||| +|+|.+.++.++|+.+.+.   .+.+|+++||++++|+.++++.+.. ++..+++.++.++
T Consensus       256 ~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~  334 (432)
T COG0001         256 YYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGER  334 (432)
T ss_pred             ccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            999999999999999999 9999999999999988764   6778999999999999999999887 4589999999999


Q ss_pred             HHHHHHhhcC-CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548         154 FRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       154 l~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      |++.|++.+. .++.......|.++.+.+....            .....+.+.|+++||++.|..-...-+|  ..+++
T Consensus       335 L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~ea~flS--~ahte  412 (432)
T COG0001         335 LAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLS--TAHTE  412 (432)
T ss_pred             HHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccccceeee--cccCH
Confidence            9999954443 2566677777777877776631            1234567799999999999753434444  67999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy6548         221 QELREGLDIIINTINTMAA  239 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++|++.++.++++++++..
T Consensus       413 ~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         413 EDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999988653

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.6e-34  Score=245.46  Aligned_cols=215  Identities=41%  Similarity=0.670  Sum_probs=191.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|.++|++||+++|+||+|+|||++|..++++.+++.||++++||++++| +|
T Consensus       219 ~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p  297 (441)
T PRK05769        219 PEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LP  297 (441)
T ss_pred             CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC-cc
Confidence            46899999999999999999999999999999999999999999999999999887888889999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +|+++++++++... ...+++|+++++++++++.++++.+++ ++.++++++.+++++.| +++.  ......+.+.|.+
T Consensus       298 ~gav~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~G~~  374 (441)
T PRK05769        298 LGAVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKEL-KELKEKYEFIGDVRGLGLM  374 (441)
T ss_pred             cEEEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeecceEE
Confidence            99999999887644 446788999999999999999999988 99999999999999999 6654  2345577888999


Q ss_pred             EEEEecCCc-----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSI-----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       177 ~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.+++..+.     .....+.+.|+++|+++.+.+.+.+||+|++.+|++|++++++++++++.++
T Consensus       375 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        375 IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999885431     2356788899999999988777899999999999999999999999998764

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=8.3e-34  Score=245.10  Aligned_cols=220  Identities=36%  Similarity=0.655  Sum_probs=192.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|
T Consensus       217 ~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G-~p  295 (451)
T PRK06918        217 PETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG-VP  295 (451)
T ss_pred             CCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC-Cc
Confidence            46899999999999999999999999999999999999999999999999999877777888899999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +||+++++++++.+.+..+..|+++++++++++.++++.++++++.+++++++++++++| +.+.  ......+.+.|.+
T Consensus       296 ig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l-~~l~~~~~~~~~vrg~G~~  374 (451)
T PRK06918        296 ISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF-EEMKNKYNCIGDVRGLGAM  374 (451)
T ss_pred             cEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhhCCCceeeccceeE
Confidence            999999999999888777889999999999999999999988889999999999999999 6653  2334456677888


Q ss_pred             EEEEecC-------CchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         177 NAIVLDK-------SILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       177 ~~~~~~~-------~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +.+.+..       +......+.+.|.++||++.+.+  ++.+|++|++.++++++++++++|++++.++..+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~  447 (451)
T PRK06918        375 CAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYEK  447 (451)
T ss_pred             EEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence            8877631       11346678888899999998864  4889999999899999999999999999887554

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=6e-34  Score=264.73  Aligned_cols=217  Identities=29%  Similarity=0.510  Sum_probs=195.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++||+||+++++|.++|+++|+++++++|++||+++|+||+++|||++|. .|+++++|+.||+++++|++++| +
T Consensus       782 ~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG-~  860 (1013)
T PRK06148        782 GRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNG-H  860 (1013)
T ss_pred             CCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCC-c
Confidence            367999999999999999999999999999999999999999999999999996 67889999999999999999999 8


Q ss_pred             chheeEeChhhhhccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeec
Q psy6548          98 PISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKG  174 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~  174 (242)
                      |+|.+++++++++.+.+. .+.+||++||+++++++++++.++++++.++.+++.+++++.| +++.  ......+.+.|
T Consensus       861 Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~VrG~G  939 (1013)
T PRK06148        861 PMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL-RELQDRFDIIGDVRGMG  939 (1013)
T ss_pred             ceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHhCCCceEEeeec
Confidence            999999999999988765 3778999999999999999999998899999999999999999 6663  24567889999


Q ss_pred             eeEEEEecCCc-------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       175 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .++.+++..+.       .....+.+.|+++||++.+.+  .+.+||.|++.+|++++++++++|++++.++
T Consensus       940 l~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        940 LFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             eEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            99999986431       235678899999999998764  4899999999999999999999999999875

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-33  Score=239.31  Aligned_cols=223  Identities=35%  Similarity=0.604  Sum_probs=193.4

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      +++||++. +...++++++|++||+++++|.+.++.++++++.++|++||+++|+||+|+|+++.|.++....+++.||+
T Consensus       150 ~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi  229 (375)
T PRK04260        150 AIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDI  229 (375)
T ss_pred             eCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCE
Confidence            46889998 55555689999999999999999999999999999999999999999999999888876565567889999


Q ss_pred             EEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-
Q psy6548          86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-  164 (242)
Q Consensus        86 ~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-  164 (242)
                      ++|||++++| +|+|++++++++++.+....+..++++++++++++.++++.++.+++.+++++..+.+++.+.+.+.. 
T Consensus       230 ~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  308 (375)
T PRK04260        230 FTLAKGLANG-VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDK  308 (375)
T ss_pred             EEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999 89999999999999888767788999999999999999998877778888999999999888433332 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ......++.|+++|+++..   +..++.+.|.++||.+.+.+.+.+|++|++.++++++++++++|+++
T Consensus       309 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        309 ETVTTVRGLGYMIGIETTA---DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             CCeeEEeccceEEEEEecC---cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            2334556689999999843   46789999999999999887789999999999999999999999875

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=4.2e-34  Score=246.43  Aligned_cols=230  Identities=21%  Similarity=0.304  Sum_probs=188.5

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      .++.+||||+++  +.+.  .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|| ++|..++.++
T Consensus       224 ~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~  302 (474)
T PLN02482        224 ATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY  302 (474)
T ss_pred             CeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHH
Confidence            357799999998  3443  4689999999999999999999999999999999999999999999999 8888778788


Q ss_pred             CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      +++.||+++++|+++|| +|+|.+.+++++++.+.+   ..+++||++||+++++++++|+.++++++.++++++.++++
T Consensus       303 ~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~  381 (474)
T PLN02482        303 FGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLI  381 (474)
T ss_pred             hCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            89999999999999999 899999999999998863   34778999999999999999999988889999999999999


Q ss_pred             HHHHhhcCCC--CCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLSPD--IVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      ++| +++...  ........+.++.+.+..+.            .....+.+.|+++||++.+.+... + .|++.+|++
T Consensus       382 ~~L-~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~-~-~psl~ht~~  458 (474)
T PLN02482        382 QGI-LEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA-G-FTSLAHTEE  458 (474)
T ss_pred             HHH-HHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC-C-cCCCCCCHH
Confidence            999 665321  22111222235555553310            124578899999999998753322 2 378999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      ||+++++++++++.++
T Consensus       459 dId~~l~al~~~l~~~  474 (474)
T PLN02482        459 DIDFTIAAAERVLARI  474 (474)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998753

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=1.2e-33  Score=243.15  Aligned_cols=229  Identities=18%  Similarity=0.289  Sum_probs=191.7

Q ss_pred             cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      +++.+||||++.  +.+..+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++ | +.|.+....+++
T Consensus       198 ~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~g  275 (453)
T PRK07046        198 TTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPGGYTRAHG  275 (453)
T ss_pred             ceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCcchhHHhC
Confidence            467899999999  555568899999999999999999999999999999999999999999998 4 344444556779


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCC---------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  151 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~  151 (242)
                      +.||+++++|+++|| +|+|.+++++++++.+.+         ..+++||++||+++++++++++.++++++.++++++.
T Consensus       276 v~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g  354 (453)
T PRK07046        276 LEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALA  354 (453)
T ss_pred             CCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            999999999999999 899999999999988752         1366799999999999999999998888999999999


Q ss_pred             HHHHHHHHhhcC--CCCCCeEeeeceeEEEEecCCc-------------hhHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6548         152 EIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSI-------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  216 (242)
Q Consensus       152 ~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~  216 (242)
                      ++++++| +++.  ......+.+.|.++.+.+..+.             .....+...|+++||++.+. .+.++++|+ 
T Consensus       355 ~~l~~~L-~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~~~~~p~-  431 (453)
T PRK07046        355 ARLAAGL-RAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-HNMMLVCPA-  431 (453)
T ss_pred             HHHHHHH-HHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-cCcEEEeCC-
Confidence            9999999 5542  2455667788888888763210             12346788889999999885 456788864 


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHh
Q psy6548         217 NITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                       +|++|+++++++++++++++.
T Consensus       432 -~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        432 -TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHh
Confidence             899999999999999998764

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=1.4e-33  Score=241.80  Aligned_cols=215  Identities=37%  Similarity=0.623  Sum_probs=190.0

Q ss_pred             CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+ ++.+|.++++.+++++|+++|++||+++|+||+|+|+|++|..+..+++++.||++++||+++||++
T Consensus       205 ~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~  284 (427)
T TIGR00508       205 SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYM  284 (427)
T ss_pred             CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcc
Confidence            468999999997 8888999999999999999999999999999999999999988888889999999999999999966


Q ss_pred             chheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548          98 PISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR  171 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~  171 (242)
                      +++.+++++++++.+...     .++.||++||+++++++++++.++++++.++++++.+++++.| +++.. .....+.
T Consensus       285 p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L-~~l~~~~~i~~vr  363 (427)
T TIGR00508       285 TLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKREL-SPLRKNPVVKDVR  363 (427)
T ss_pred             cceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCEEeEe
Confidence            999999999998887642     3677889999999999999999988888999999999999999 66653 2233566


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +.|.++.+.+..+ .....+.++|+++||++.+.+ +.+|++|++.+|++||+++++++++++.+
T Consensus       364 g~G~~~~i~~~~~-~~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       364 VLGAIGVVEMYKP-VNVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             ccccEEEEEECCc-cCHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            7799999999765 567889999999999998764 68999999999999999999999998864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=1.7e-33  Score=241.47  Aligned_cols=230  Identities=45%  Similarity=0.740  Sum_probs=196.2

Q ss_pred             cccccCCC-----------Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548           3 LQFPVKSK-----------QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   67 (242)
Q Consensus         3 ~~~~~~~~-----------d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~   67 (242)
                      ++..+|||           |++.  +.+..  ++++++++||+++++|.++++++++++|+++|++||+++|+||+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~  237 (413)
T cd00610         158 GVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF  237 (413)
T ss_pred             CcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            46788998           7777  44444  589999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhcc--CCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHH
Q psy6548          68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL--VPGTHGSTYGGNPLACKLAMTALDVILEENMIE  145 (242)
Q Consensus        68 ~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~  145 (242)
                      ++.|..+..+.+++.||++++||++++| +|+|++++++++++.+  ....+.++++.++++++++.++++.++.+++.+
T Consensus       238 g~~g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~  316 (413)
T cd00610         238 GRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLE  316 (413)
T ss_pred             CcCcchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHH
Confidence            8888766667778899999999999999 9999999999999986  445567788999999999999999888778899


Q ss_pred             HHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6548         146 NAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPAL  216 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~  216 (242)
                      +++++++++++.| +.+..  .......+.|.++++.++.+.       .....+.+.|.++||.+.+.+.+.+|+++++
T Consensus       317 ~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~  395 (413)
T cd00610         317 NAAELGEYLRERL-RELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPL  395 (413)
T ss_pred             HHHHHHHHHHHHH-HHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCC
Confidence            9999999999999 65542  233334567889998886531       3567899999999999999877899999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy6548         217 NITEQELREGLDIIINTI  234 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l  234 (242)
                      .+|++++++++++|++++
T Consensus       396 ~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         396 IITEEEIDEGLDALDEAL  413 (413)
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.2e-33  Score=242.41  Aligned_cols=228  Identities=25%  Similarity=0.358  Sum_probs=190.3

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      .++.+||||++.  +.+.  .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|| +++..++.++
T Consensus       178 ~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~  256 (428)
T PRK12389        178 EVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL  256 (428)
T ss_pred             ceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHH
Confidence            467889999988  4443  3689999999999999999999999999999999999999999999999 8877667778


Q ss_pred             CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      +++.||+++++|++++| +|+|.+++++++++.+.+   ..+++||++||+++++++++++.++++++.++++++.++++
T Consensus       257 ~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~  335 (428)
T PRK12389        257 LGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLE  335 (428)
T ss_pred             hCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            89999999999999999 899999999999998853   35778999999999999999999988889999999999999


Q ss_pred             HHHHhhcCC--CCCCeE-eeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548         156 SELRSRLSP--DIVPVV-RGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       156 ~~l~~~l~~--~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      +.| +++..  ...... .+.| ++.+++..+.            .....+.+.|+++|+++.+.+.+.+  .|++.+|+
T Consensus       336 ~~L-~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~~~l~~t~  411 (428)
T PRK12389        336 EGI-LEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAW--FLTTAHTE  411 (428)
T ss_pred             HHH-HHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCe--eecCCCCH
Confidence            999 55531  233334 4445 6666664321            1256789999999999988644433  46799999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINT  236 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~  236 (242)
                      +|++++++++++++++
T Consensus       412 e~id~~~~~l~~~l~~  427 (428)
T PRK12389        412 EDIEETLEAVDRAFAQ  427 (428)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999865

>KOG1404|consensus

Probab=100.00  E-value=3e-34  Score=230.92  Aligned_cols=210  Identities=36%  Similarity=0.584  Sum_probs=191.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      ...+++++.|++++.+|.+.+++.||++..++|+++|.++|.||+++||||+|..|.++..++.||+++++|++|+| +|
T Consensus       210 ~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~P  288 (442)
T KOG1404|consen  210 PETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG-FP  288 (442)
T ss_pred             CCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC-Cc
Confidence            45699999999999999999999999999999999999999999999999999989999999999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548          99 ISAVLADDEVMGTLVPGT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL  175 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~  175 (242)
                      +|.++.+++++..+.+.. +..|+++||++++++.++|+.+++++++++..+.+.++++.| .++.+  .++..+++.|+
T Consensus       289 l~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l-~~l~d~h~iIGdVRG~GL  367 (442)
T KOG1404|consen  289 LGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKL-AALKDKHPIIGDVRGRGL  367 (442)
T ss_pred             ceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHhhcCCceeeccccee
Confidence            999999999999988766 888999999999999999999999999999999999999999 77765  56778899999


Q ss_pred             eEEEEecCCc--------hhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSI--------LEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       176 ~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      ++++++.++.        .....+.+.+.++|+.+..+  .++.+|++|+++.|+||++.+++..
T Consensus       368 m~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  368 MLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             EEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence            9999987763        33556889999999999655  4669999999999999997777755

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=262.17  Aligned_cols=216  Identities=30%  Similarity=0.569  Sum_probs=192.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|. .++++++|+.||++++||++++| +
T Consensus       742 ~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G-~  820 (972)
T PRK06149        742 GRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNG-H  820 (972)
T ss_pred             CCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCC-e
Confidence            468999999999999999999999999999999999999999999999999997 55788899999999999999999 8


Q ss_pred             chheeEeChhhhhccCC-CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeec
Q psy6548          98 PISAVLADDEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKG  174 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~  174 (242)
                      ++|++++++++++.+.+ ..+.+|+++||+++++++++++.++++++.++.+++.+++++.| +++.  ..+...+.+.|
T Consensus       821 Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~vrG~G  899 (972)
T PRK06149        821 PLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARL-EALADRHPLIGAVHGMG  899 (972)
T ss_pred             eeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeecc
Confidence            99999999999988864 34556789999999999999999998899999999999999999 6663  24567788999


Q ss_pred             eeEEEEecCCc-------hhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       175 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++.+++..+.       .....+.+.|+++||++.+.+.  +.+||.|++.+|++++++++++|++++.+
T Consensus       900 l~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        900 LYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             eEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            99999985321       2356789999999999988754  78999999999999999999999999875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=1.1e-33  Score=243.07  Aligned_cols=212  Identities=33%  Similarity=0.523  Sum_probs=181.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++.    
T Consensus       223 ~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~----  298 (443)
T PRK08297        223 PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQV----  298 (443)
T ss_pred             CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEecccccc----
Confidence            4789999999999999999999999999999999999999999999999999998888899999999999999861    


Q ss_pred             hheeEeChhhhhc----cC-CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCC-eE
Q psy6548          99 ISAVLADDEVMGT----LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVP-VV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~----l~-~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~-~~  170 (242)
                       |.++..+++.+.    +. ...+++|+++||++++++.++++.++++++.++++++.+++++.| +++..  .... .+
T Consensus       299 -~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~~v  376 (443)
T PRK08297        299 -CGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARL-EELAAEFPAVVSNV  376 (443)
T ss_pred             -cceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHCCCcceee
Confidence             223334333221    11 234788999999999999999999988889999999999999999 65532  2223 67


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+.|.++.+++... .....+.+.|+++|+++.+.+.+.+||+|++.+|++|+++++++|++++.++
T Consensus       377 rg~G~~~~i~~~~~-~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        377 RGRGLMCAFDLPTT-ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             eccceEEEEEecCH-HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            78899999999764 4567899999999999998877899999999999999999999999998865

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.9e-33  Score=238.54  Aligned_cols=229  Identities=21%  Similarity=0.348  Sum_probs=189.5

Q ss_pred             cccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           5 FPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         5 ~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      ..+||||+++  +.+.  .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|| ++|..++.++++
T Consensus       181 ~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~g  259 (433)
T PRK00615        181 LSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYH  259 (433)
T ss_pred             EeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcC
Confidence            5578999988  4443  3689999999999999999999999999999999999999999999999 788777778899


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      +.||++++||++++| +++|++++++++++.+.+.   .+.+|++++|+++++++++++.++++++.++++++.+++++.
T Consensus       260 v~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~  338 (433)
T PRK00615        260 VKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSP  338 (433)
T ss_pred             CCCCeEEEcccccCC-cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999 8999999999999988642   366789999999999999999998888899999999999988


Q ss_pred             HHhhcCC-CCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHH
Q psy6548         158 LRSRLSP-DIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR  224 (242)
Q Consensus       158 l~~~l~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~  224 (242)
                      |++.+.. +........|.++.+++..+.            .....+..+|.++||++.+...+.  ..++..+|++||+
T Consensus       339 l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~ls~~ht~~did  416 (433)
T PRK00615        339 IEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA--SFLSSAHSMENLD  416 (433)
T ss_pred             HHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc--cceecCCCHHHHH
Confidence            8432222 222233337889998886531            124579999999999998763322  1334679999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINTM  237 (242)
Q Consensus       225 ~~~~~l~~~l~~~  237 (242)
                      ++++.++++++++
T Consensus       417 ~~~~a~~~~~~~~  429 (433)
T PRK00615        417 YAQNVLIDSLEKV  429 (433)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=3.8e-33  Score=239.92  Aligned_cols=230  Identities=27%  Similarity=0.399  Sum_probs=188.4

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||||+++  +.+.  .+++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|| ++|..+..+++
T Consensus       174 ~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~  252 (423)
T TIGR00713       174 TLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYF  252 (423)
T ss_pred             eEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHh
Confidence            46788999988  3343  2689999999999999988888999999999999999999999999998 67665566677


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ++.||+++|||++++| +|+||+++++++++.+.+   ..+.+|+++++++++++.++++.++++++.++++++.+++++
T Consensus       253 ~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~  331 (423)
T TIGR00713       253 GVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAE  331 (423)
T ss_pred             CCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999999998874   236678999999999999999998877788889999999988


Q ss_pred             HHHhhcCC-CCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHH
Q psy6548         157 ELRSRLSP-DIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL  223 (242)
Q Consensus       157 ~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i  223 (242)
                      .|++.+.. .....+.+.|.++.+.+..+.            .....+.+.|+++||++.+.+.+.+|++++  +|++++
T Consensus       332 ~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i  409 (423)
T TIGR00713       332 GLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDI  409 (423)
T ss_pred             HHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--CCHHHH
Confidence            88433332 344445667888887665320            123468889999999998765567899865  799999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         224 REGLDIIINTINTM  237 (242)
Q Consensus       224 ~~~~~~l~~~l~~~  237 (242)
                      ++++++|+++++++
T Consensus       410 ~~~~~~l~~~l~~~  423 (423)
T TIGR00713       410 ENTIEAAEEVFAEL  423 (423)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>KOG1401|consensus

Probab=100.00  E-value=3.7e-33  Score=226.08  Aligned_cols=233  Identities=32%  Similarity=0.526  Sum_probs=195.7

Q ss_pred             ccccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           2 SLQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      ..+..+++||+.+  +.++  +++++++|+||+++.+|.++++++|+..|+++|+++|+++|.||+++||||.|..|+.+
T Consensus       183 p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e  262 (433)
T KOG1401|consen  183 PDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQE  262 (433)
T ss_pred             CceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHH
Confidence            4678899999999  5555  45699999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCC---CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548          78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  154 (242)
Q Consensus        78 ~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l  154 (242)
                      +++..||+.+++|.++|| +|+|.+.+++++++.+.+..+   ++||++||+++.++..+++.+.++++.+++.+..+.+
T Consensus       263 ~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L  341 (433)
T KOG1401|consen  263 YFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKEL  341 (433)
T ss_pred             HhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            999999999999999999 999999999999999998755   9999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCC----EEEEec----cCcCCHHHHH
Q psy6548         155 RSELRSRLSP-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNN----IIRLSP----ALNITEQELR  224 (242)
Q Consensus       155 ~~~l~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~----~lR~~~----~~~~t~e~i~  224 (242)
                      ++.+.+.+.. . ......+.+.++.+.+..+   ...+.+...+.|.++.+.+.+    .+|+.|    ...+++|.++
T Consensus       342 ~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p---~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~  418 (433)
T KOG1401|consen  342 RKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP---VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQ  418 (433)
T ss_pred             HHHHHHHhccCCCceeeeeeeEEEEEEEEeec---hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHH
Confidence            9999555543 1 2222256677777776664   445555566666555544333    377777    2345689999


Q ss_pred             HHHHHHHHHHHHHh
Q psy6548         225 EGLDIIINTINTMA  238 (242)
Q Consensus       225 ~~~~~l~~~l~~~~  238 (242)
                      ++++.+.+.+.++.
T Consensus       419 ~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  419 RLLTILEKVLSALN  432 (433)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=1.5e-32  Score=247.89  Aligned_cols=215  Identities=27%  Similarity=0.428  Sum_probs=182.5

Q ss_pred             CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .++++++|+||+ ++.+|.++|+++|+++|+++|++||+++|+||+++||||+|..++.+++|+.||+++++|+++|||+
T Consensus       582 ~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~  661 (817)
T PLN02974        582 NGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLV  661 (817)
T ss_pred             CCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccCCCC
Confidence            368999999995 8999999999999999999999999999999999999999999999999999999999999999978


Q ss_pred             chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHhhcC-CCC
Q psy6548          98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAY----KMGEIFRSELRSRLS-PDI  166 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~----~~~~~l~~~l~~~l~-~~~  166 (242)
                      |+|.+++++++++.+..      ..|++||++||+++++++++|+.++++++.+++.    ++...+++.|.+.+. ...
T Consensus       662 Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~  741 (817)
T PLN02974        662 PLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPN  741 (817)
T ss_pred             ccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999988742      3488999999999999999999998875444444    444444555522332 235


Q ss_pred             CCeEeeeceeEEEEecCCc-------hhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ...+.+.|.++.+++..+.       ..+..+.+.++ ++|+++++.+ +.+++.|+...++++++++++++.+.+
T Consensus       742 V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-nvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        742 VERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-NVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             eeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            6778899999999996531       12456888889 9999999874 789999999999999999999998865

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=1.2e-32  Score=236.21  Aligned_cols=208  Identities=27%  Similarity=0.418  Sum_probs=178.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC--CCEEEeecccc-CC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PDIVILGKALS-GG   95 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~~~~~~sK~~~-~g   95 (242)
                      .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++|+.  ||++++||+++ +|
T Consensus       249 ~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG  328 (464)
T TIGR00699       249 HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAG  328 (464)
T ss_pred             CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCC
Confidence            3679999999999999999999999999999999999999999999999999998888999987  99999999996 67


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CC-CCCeEe-
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PD-IVPVVR-  171 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~~~-  171 (242)
                       +    +++.+ .+....+..+++|+++||++++++.++++.++++++.++.+++.+++++.| +++.  .. .+..+. 
T Consensus       329 -~----~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~i~~vRg  401 (464)
T TIGR00699       329 -Y----FFHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL-EDLQKKYPEFIQNLRG  401 (464)
T ss_pred             -c----cccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCceeeecc
Confidence             3    22332 222122345888999999999999999999998899999999999999999 6653  22 344556 


Q ss_pred             -eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         172 -GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                       +.|+++.++++.. .....+.+.++++|+++.+.+.+.+||.|++.+|++|+++++++|++++
T Consensus       402 ~G~Glm~gie~~~~-~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       402 KGRGTFIAWDTPDE-AKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             cCeEEEEEEecCCH-HHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence             8899999998654 4577899999999999988777899999999999999999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=3.4e-32  Score=231.01  Aligned_cols=225  Identities=39%  Similarity=0.658  Sum_probs=188.2

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++|||++. +...++++++|+++|+++++|..+++.+++++|.++|++||+++|+||+|++|++.|........++.+
T Consensus       153 ~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~  232 (379)
T TIGR00707       153 SYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEP  232 (379)
T ss_pred             eeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCC
Confidence            3467888888 555456799999999999988777889999999999999999999999999888776544444567788


Q ss_pred             CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      |++++||++++| +|+||+++++++++.+.+.....+++.++++++++.++++.++.+++.+++++++++++++| +++.
T Consensus       233 d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l-~~~~  310 (379)
T TIGR00707       233 DIITLAKGLGGG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERL-EELG  310 (379)
T ss_pred             CEEEEcccccCC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHH
Confidence            999999999999 99999999999999988766677888899999999999998876678899999999999999 5543


Q ss_pred             CCC-CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         164 PDI-VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ... ....++.|.++++.++.+   ..++.+.|.++||.+.|.+.+++|+++++.++++++++++++|++++
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       311 KNYPNKEVRGKGLMLGIELEAP---CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             hhCCCCccccCceEEEEEecCc---HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            211 122345678888887653   57899999999999999877899999999999999999999998753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1e-32  Score=236.78  Aligned_cols=229  Identities=26%  Similarity=0.402  Sum_probs=193.3

Q ss_pred             ccccCCCChhh-h-cCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA-K-LKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~-~-~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      .+.+||||+++ + .+.  .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|+ ++|..+...++
T Consensus       176 ~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~  254 (426)
T PRK00062        176 TLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYY  254 (426)
T ss_pred             eEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHh
Confidence            57789999988 3 342  3689999999999999999999999999999999999999999999998 67766666678


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ++.||++++||++++| +|+|++++++++++.+.+   ..+.+|+++++++++++.++++.++++++.++++++.+++++
T Consensus       255 ~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~  333 (426)
T PRK00062        255 GVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAE  333 (426)
T ss_pred             CCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999999998853   245678899999999999999999877889999999999999


Q ss_pred             HHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         157 ELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       157 ~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      .| +++.  ........+.|.++.+.+..+.            ..+..+.+.|+++|+++.+.+.+.++++  +.+|++|
T Consensus       334 ~l-~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~--~~~t~~e  410 (426)
T PRK00062        334 GL-KEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVS--AAHTDED  410 (426)
T ss_pred             HH-HHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeee--ccCCHHH
Confidence            99 5442  2344556788999998886421            1246899999999999988766677775  7899999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINTM  237 (242)
Q Consensus       223 i~~~~~~l~~~l~~~  237 (242)
                      +++++++|++++..+
T Consensus       411 i~~~~~~l~~~l~~~  425 (426)
T PRK00062        411 IEKTLEAARKAFAAL  425 (426)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=6.4e-32  Score=232.08  Aligned_cols=217  Identities=34%  Similarity=0.642  Sum_probs=189.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|++++|..++++..++.||+.+|||++++| +|
T Consensus       197 ~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~r  275 (425)
T PRK08088        197 PEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG-FP  275 (425)
T ss_pred             CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-Cc
Confidence            47899999999999999999999999999999999999999999999998888766666778899999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~  176 (242)
                      +||+++++++++.+....+..+++++++.++++.++++.++.+++.+++++..+++++.| +.+..  .....+.+.|++
T Consensus       276 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~v~g~G~~  354 (425)
T PRK08088        276 LAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL-LAIAEKHPEIGDVRGLGAM  354 (425)
T ss_pred             ceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeccceE
Confidence            999999999999998877888999999999999999998887888999999999999998 55532  233455677999


Q ss_pred             EEEEecCC-------chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKS-------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       177 ~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +|+.+.++       ......+.+.+.++|+.+.+.+  .+.+|++|++.++++++++++++|++++.++
T Consensus       355 ~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        355 IAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            99998432       1347789999999999887653  4889999999999999999999999998764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=2.3e-31  Score=228.51  Aligned_cols=208  Identities=33%  Similarity=0.499  Sum_probs=174.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .++++++++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++..    
T Consensus       216 ~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~~~----  291 (431)
T TIGR03251       216 PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQV----  291 (431)
T ss_pred             CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccCcc----
Confidence            5789999999999999999999999999999999999999999999999999988888899999999999999741    


Q ss_pred             hheeEeCh--hhhhc-cC-CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CC-CCCeEe
Q psy6548          99 ISAVLADD--EVMGT-LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PD-IVPVVR  171 (242)
Q Consensus        99 ~g~~~~~~--~~~~~-l~-~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~~~  171 (242)
                      .|++.+.+  +++.. +. +..+.+||++||++++++.++++.++++++.++++++.+++++.| +++.  .. ....+.
T Consensus       292 ~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~i~~vr  370 (431)
T TIGR03251       292 CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARL-HELAAEFPHLVSNPR  370 (431)
T ss_pred             ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCccceeccc
Confidence            23333332  22221 11 224678999999999999999999988888899999999999999 5542  22 445567


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.|.++.++++.. .....+.+.|+++||++.+.+.+.+|++|++.+|++|+++++++|++
T Consensus       371 g~G~~~~i~~~~~-~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       371 GRGLMCAFDLPST-ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             ccceeEEEEeCCH-HHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            7899999999764 45667999999999999988778999999999999999999999875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.97  E-value=2.2e-30  Score=216.03  Aligned_cols=164  Identities=48%  Similarity=0.850  Sum_probs=150.9

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      ..+++++|++||+++.+|.++++++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +
T Consensus       174 ~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~  252 (339)
T PF00202_consen  174 NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-L  252 (339)
T ss_dssp             HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-S
T ss_pred             cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-h
Confidence            367899999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL  175 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~  175 (242)
                      |+|.+++++++++.+.+..+++|++++|+++++++++++.++++++.+++++...++++.| +++..  ..+..+.+.|.
T Consensus       253 p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~Gl  331 (339)
T PF00202_consen  253 PISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGL-RELAARYPLIGEVRGIGL  331 (339)
T ss_dssp             SEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHTTTEEEEEEETT
T ss_pred             hcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeeeCe
Confidence            9999999999999998888999999999999999999999999999999999999999999 67753  56778899999


Q ss_pred             eEEEEecC
Q psy6548         176 LNAIVLDK  183 (242)
Q Consensus       176 ~~~~~~~~  183 (242)
                      ++.+++.+
T Consensus       332 ~~~ie~~k  339 (339)
T PF00202_consen  332 MIGIELVK  339 (339)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEEC
Confidence            99998753

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.96  E-value=4.4e-28  Score=208.21  Aligned_cols=221  Identities=21%  Similarity=0.322  Sum_probs=173.4

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      +..|+|||+++  +.+.  .+++++|++||++++    .|+.+|+++|.++|++||+++|+||+|+|++..+. +....+
T Consensus       166 ~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~-g~~~~~  240 (431)
T PRK06209        166 TVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR-GAQKLY  240 (431)
T ss_pred             ccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc-hhhHHh
Confidence            46789999998  4443  358999999999876    77889999999999999999999999999865432 233457


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhc--cC----C--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGT--LV----P--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  151 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~--l~----~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~  151 (242)
                      ++.||++++||++++| +++|++++++++++.  +.    .  ..+++|+++||+++++++++++.++++++.++++++.
T Consensus       241 gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g  319 (431)
T PRK06209        241 GIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQG  319 (431)
T ss_pred             CCCcceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            8999999999999999 899999999998876  31    1  1367788899999999999999998888999999999


Q ss_pred             HHHHHHHHhhcC--CCCCCeEeeeceeEEEEecC------Cc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         152 EIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDK------SI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       152 ~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      +++++.| +++.  ......+.+.|.++.+.+..      +. .....+.++|+++|+++.+     ++++  ..+|++|
T Consensus       320 ~~l~~~L-~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht~~d  391 (431)
T PRK06209        320 AKLAAGV-NEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHGDAD  391 (431)
T ss_pred             HHHHHHH-HHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCCHHH
Confidence            9999999 5543  23333445555555544421      10 1233678899999998732     4454  7899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy6548         223 LREGLDIIINTINTMA  238 (242)
Q Consensus       223 i~~~~~~l~~~l~~~~  238 (242)
                      |++++++|++++.++.
T Consensus       392 Id~~l~~l~~~l~~~~  407 (431)
T PRK06209        392 IERTIDAVHGALGVYR  407 (431)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998874

>PLN02822 serine palmitoyltransferase

Probab=99.96  E-value=1.3e-27  Score=207.54  Aligned_cols=227  Identities=18%  Similarity=0.234  Sum_probs=176.3

Q ss_pred             cccccCCCChhh--hcC---CC-----CCE-EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCc
Q psy6548           3 LQFPVKSKQVPA--KLK---SN-----PNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGR   69 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~---~~-----~~~-~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~   69 (242)
                      .++.|+|||.++  +.+   .+     +++ ++|++|++++++|.+.+    +++|+++|++||+++|+||+|+ | +|+
T Consensus       216 ~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~  291 (481)
T PLN02822        216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGK  291 (481)
T ss_pred             eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCC
Confidence            467899999977  222   11     234 89999999999998887    8999999999999999999996 2 466


Q ss_pred             cCcccccccCCC---CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHHHHh-c
Q psy6548          70 TGKLLAIHYEDV---RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVILE-E  141 (242)
Q Consensus        70 ~g~~~~~~~~~~---~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~~~~-~  141 (242)
                      +|.+ ..+++++   .+|+++  |||+++   ...||+++++++++.++....+++|+++  +..++++.++++.++. +
T Consensus       292 ~G~G-~~e~~~v~~~~~dii~~s~sKalg---~~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~  367 (481)
T PLN02822        292 SGRG-LSEHFGVPIEKIDIITAAMGHALA---TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNP  367 (481)
T ss_pred             CCCC-hHHHcCCCCCCCeEEEecchhhhh---hCCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCH
Confidence            6655 4466776   578877  789998   2236789999999988876677788766  6677888888987765 5


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHH-HCCceeccC--------
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMK-DAGLVTKPI--------  205 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-~~gi~~~~~--------  205 (242)
                      +..++++++++++++.| +.+.. +....+..++++++.++..       .....++++.|+ ++||++.+.        
T Consensus       368 ~~~~~l~~~~~~l~~~L-~~~~g-~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~  445 (481)
T PLN02822        368 SVLAKLKENIALLHKGL-SDIPG-LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKC  445 (481)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCC-cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCC
Confidence            68899999999999999 65431 2222234678888888642       022468999998 889999864        


Q ss_pred             -CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         206 -SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       206 -~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                       .+..+|+++++.+|++||++++++|++++.++.+
T Consensus       446 ~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~  480 (481)
T PLN02822        446 RLPVGIRLFVSAGHTESDILKASESLKRVAASVLK  480 (481)
T ss_pred             CCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence             1347999999999999999999999999988754

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.95  E-value=4.3e-27  Score=196.02  Aligned_cols=219  Identities=19%  Similarity=0.287  Sum_probs=171.8

Q ss_pred             ccccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCc
Q psy6548           2 SLQFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGK   72 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~   72 (242)
                      +.++.|+|||+++  +.+++   .  +...|++|+++||.|++.|    |++|.+++++|++++++||+| .| +|..|.
T Consensus       145 a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr  220 (388)
T COG0156         145 AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGR  220 (388)
T ss_pred             CcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCc
Confidence            3578999999988  44433   2  4799999999999999998    999999999999999999999 45 566776


Q ss_pred             ccccccCCCCC---CEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHh-ccHH
Q psy6548          73 LLAIHYEDVRP---DIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILE-ENMI  144 (242)
Q Consensus        73 ~~~~~~~~~~~---~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~-~~~~  144 (242)
                      ++. +++|+.+   |++  +|||+||+   -.||+.+++.+++.+........|+  .+|...+++.++++.+++ ++.+
T Consensus       221 G~~-e~~g~~~~~vdi~~gTlsKAlGs---~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r  296 (388)
T COG0156         221 GLA-EHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERR  296 (388)
T ss_pred             cHH-HHhCCCCccceEEEEEchhhhcc---cCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHH
Confidence            543 5666643   333  39999992   2467999999999998765555454  456666678889998875 5678


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCc
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALN  217 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~  217 (242)
                      ++++++...++..+ +..+.   ...+..++++.+.+.++ ..+.++..+|+++||.+.+       .+..++|++++..
T Consensus       297 ~~L~~~~~~~~~~~-~~~~~---~~~~s~s~I~pv~~gd~-~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~  371 (388)
T COG0156         297 ERLQELAAFFRSLL-KALGL---VLLPSESPIIPVILGDE-ERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAA  371 (388)
T ss_pred             HHHHHHHHHHHHHH-HhcCC---ccCCCCCCeeeeEeCCH-HHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCC
Confidence            89999999998666 55442   11344567777888776 6789999999999999963       3668999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy6548         218 ITEQELREGLDIIINT  233 (242)
Q Consensus       218 ~t~e~i~~~~~~l~~~  233 (242)
                      +|++||+++++.|.++
T Consensus       372 ht~~~I~~l~~~l~~~  387 (388)
T COG0156         372 HTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998764

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=1.6e-26  Score=196.81  Aligned_cols=216  Identities=11%  Similarity=0.113  Sum_probs=164.5

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI   76 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~   76 (242)
                      +++.|+|||+++  +.++  .++.++|++|++++|.|+++|    +++|.++|++||+++|+||+|+.  +|..|.+ ..
T Consensus       227 ~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G-~~  301 (476)
T PLN02955        227 EVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGG-VA  301 (476)
T ss_pred             eEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCc-HH
Confidence            467899999999  4443  346789999999999999888    99999999999999999999963  4665554 34


Q ss_pred             ccCCCCCCE----EEeeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548          77 HYEDVRPDI----VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILEE-NMIENAYK  149 (242)
Q Consensus        77 ~~~~~~~~~----~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~~-~~~~~~~~  149 (242)
                      +++++.+++    .+|||++|   .+.|++++++++++.++.......|+  .++...++++++++.++.+ ..++++++
T Consensus       302 e~~g~~~di~ii~~TLsKA~G---~~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~  378 (476)
T PLN02955        302 EEFNCEADVDLCVGTLSKAAG---CHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWE  378 (476)
T ss_pred             HHhCCCCCCcEEEEeCccchh---ccCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            566765554    44999998   34566889998888887654444443  3455666777888887653 45567777


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQE  222 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e~  222 (242)
                      +.+++++.+    +  ...    .++++.+.+..+ ..+..++++|+++||++.+       .+..++|++++..||++|
T Consensus       379 n~~~fr~~~----G--~~~----~sPI~pI~ig~~-~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~ed  447 (476)
T PLN02955        379 RVKEFKALS----G--VDI----SSPIISLVVGNQ-EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTED  447 (476)
T ss_pred             HHHHHHHhc----C--CCC----CCCEEEEEeCCH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHH
Confidence            777776632    2  111    267788888776 7788899999999999963       356689999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINTM  237 (242)
Q Consensus       223 i~~~~~~l~~~l~~~  237 (242)
                      |+++++.|.++....
T Consensus       448 Id~lv~~L~~~~~~~  462 (476)
T PLN02955        448 VKKLITALSSCLDFD  462 (476)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887654

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=195.39  Aligned_cols=220  Identities=19%  Similarity=0.221  Sum_probs=167.1

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccc-cccCCCCCCEEE-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLA-IHYEDVRPDIVI-   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~-~~~~~~~~~~~~-   87 (242)
                      ++. +...+.+|++|+++.++|||| .+.+++++++|+++|++||++||+||+|.++.+.+. ..+ .+..+.....++ 
T Consensus       153 ~~~l~~~i~~ktk~i~ln~P~NPTG-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i  231 (393)
T COG0436         153 LEDLEAAITPKTKAIILNSPNNPTG-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITI  231 (393)
T ss_pred             HHHHHhhcCccceEEEEeCCCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEE
Confidence            444 444555999999999999999 466788999999999999999999999999866663 221 122221112222 


Q ss_pred             --eecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy6548          88 --LGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        88 --~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~  159 (242)
                        |||.++ +| ||+||++++ +++++.+.......+++.+.++|.++.++|+....    +...+.++++++.+.+.| 
T Consensus       232 ~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l-  309 (393)
T COG0436         232 NSFSKTYGMTG-WRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEAL-  309 (393)
T ss_pred             ecccccccccc-cceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH-
Confidence              899999 99 999999998 77877777554555667888999999999884321    233466888899999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI-------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      ++++.-.....+..+++.|.+++.. .+..+|+..|+++ ||.+.|+       +.+++|++  +..+.+++++++++++
T Consensus       310 ~~~~g~~~~~~p~Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~  386 (393)
T COG0436         310 NEIGGLSVVKPPEGAFYLFPKIPEL-LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLA  386 (393)
T ss_pred             HhcCCeeeccCCCeeEEEEeecCCC-CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHH
Confidence            6665322333355778999998875 5789999999876 7999885       45799999  6677799999999999


Q ss_pred             HHHHHH
Q psy6548         232 NTINTM  237 (242)
Q Consensus       232 ~~l~~~  237 (242)
                      +.+...
T Consensus       387 ~~~~~~  392 (393)
T COG0436         387 RFLAEY  392 (393)
T ss_pred             HHHHhc
Confidence            988753

>KOG1403|consensus

Probab=99.95  E-value=8.2e-27  Score=182.47  Aligned_cols=218  Identities=30%  Similarity=0.481  Sum_probs=191.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      ...+++++.|+.++-+|+++|++.|++.+++-.+.+|-+.|.||++.|||+.|. .|+++.+++.||+++++|.+|.| .
T Consensus       207 g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNG-h  285 (452)
T KOG1403|consen  207 GQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNG-H  285 (452)
T ss_pred             CCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCC-C
Confidence            346889999999999999999999999999999999999999999999999997 56888899999999999999999 9


Q ss_pred             chheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeee
Q psy6548          98 PISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGK  173 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~  173 (242)
                      |++.+..++++++.+...  ....||++||++++++++.++..+++++..+.++.+.+|...| +++.  ..++..+++.
T Consensus       286 PVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL-~~~k~kh~~IGDvRGv  364 (452)
T KOG1403|consen  286 PVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLL-RRLKQKHECIGDVRGV  364 (452)
T ss_pred             eeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHhhhccceeccccc
Confidence            999999999999988763  3345889999999999999999999999999999999999999 5554  3577788999


Q ss_pred             ceeEEEEecCCc-------hhHHHHHHHHHHC-CceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         174 GLLNAIVLDKSI-------LEVYDVCIKMKDA-GLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       174 ~~~~~~~~~~~~-------~~~~~~~~~l~~~-gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |++|++++.++.       ..+..+..+|++. +|+++..  +.+.+.|-|+.+.++|+.++++..|++++..+.
T Consensus       365 GLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~me  439 (452)
T KOG1403|consen  365 GLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVME  439 (452)
T ss_pred             eEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence            999999988764       3355567777764 6888754  467899999999999999999999999988654

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.95  E-value=8.6e-26  Score=192.03  Aligned_cols=226  Identities=15%  Similarity=0.197  Sum_probs=168.4

Q ss_pred             ccccCCCChhh-h----cCC----------CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc--c
Q psy6548           4 QFPVKSKQVPA-K----LKS----------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT--G   66 (242)
Q Consensus         4 ~~~~~~~d~~~-~----~~~----------~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~--~   66 (242)
                      +..|+|||+++ +    .+.          ++++++|++|+++|++|.++|    +++++++|++||+++|+||+|+  .
T Consensus       106 ~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~  181 (392)
T PLN03227        106 VRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGT  181 (392)
T ss_pred             EEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccc
Confidence            45689998876 2    222          246899999999999998887    8999999999999999999996  2


Q ss_pred             cCccCcccccccCCCCC----CEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHH-
Q psy6548          67 LGRTGKLLAIHYEDVRP----DIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDV-  137 (242)
Q Consensus        67 ~~~~g~~~~~~~~~~~~----~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~-  137 (242)
                      +|++|. +..+++++.|    |++++|  |+++   ...|++++++++++.++...++.+++++  |+.+.++.++++. 
T Consensus       182 ~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~  257 (392)
T PLN03227        182 LGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE  257 (392)
T ss_pred             cCCCCC-cHHHHcCCCCCCCceEEEeechhhhh---ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH
Confidence            455555 4567788877    888855  6655   5567788898888777655566677765  6667777766654 


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeE--------eeeceeEEEEecCCch--------hHHHHHHHHHHCCce
Q psy6548         138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVV--------RGKGLLNAIVLDKSIL--------EVYDVCIKMKDAGLV  201 (242)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~  201 (242)
                      .+.+++.++++++++++++.| +..+......+        ...++++.+.+.+...        ....+.+.|+++|++
T Consensus       258 ~~~~~~~~~l~~~~~~l~~~L-~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~  336 (392)
T PLN03227        258 LAGPQLLNRLHDSIANLYSTL-TNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVA  336 (392)
T ss_pred             hcCHHHHHHHHHHHHHHHHHH-HhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCE
Confidence            344568899999999999999 54322111111        2346788888865311        135899999999998


Q ss_pred             eccC-----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         202 TKPI-----------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       202 ~~~~-----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.           .+..+|++++..+|+||++++++.|+++++++.
T Consensus       337 ~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~  384 (392)
T PLN03227        337 VVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL  384 (392)
T ss_pred             EEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8531           356789999999999999999999999998764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.95  E-value=5e-26  Score=194.99  Aligned_cols=222  Identities=15%  Similarity=0.249  Sum_probs=167.1

Q ss_pred             cccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccc
Q psy6548           3 LQFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~   75 (242)
                      ++..++|+|+++  +.+.   ++++++|+++++++++|.+.|    +++|.++|++||+++|+||+|+ | +|+.|.++ 
T Consensus       155 ~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-  229 (407)
T PRK09064        155 EKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-  229 (407)
T ss_pred             cEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-
Confidence            345788998887  3332   257899999999999998887    9999999999999999999996 5 56666543 


Q ss_pred             cccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhc-cHHHHHH
Q psy6548          76 IHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIENAY  148 (242)
Q Consensus        76 ~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~  148 (242)
                      ..+.++  .++++  +|||+||   ...||+++++++++.+......  .+.+.++.+++++.++++.++.. ...++++
T Consensus       230 ~~~~~~~~~~div~~t~sKa~g---~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~  306 (407)
T PRK09064        230 AERDGLMDRIDIIEGTLAKAFG---VMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQ  306 (407)
T ss_pred             HHhcCCCCCCeEEEEecchhhh---ccCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            234443  45777  6999998   2236788898888877543222  24456777888888899888754 3457888


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITE  220 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~  220 (242)
                      ++++++++.| +.++...   ..+.+.++.+.++.. ....++.++|++ +||++.+.       +.+++|+++++.+|+
T Consensus       307 ~~~~~l~~~L-~~~g~~~---~~~~~~iv~i~~~~~-~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~  381 (407)
T PRK09064        307 ERAAKLKAAL-DAAGIPV---MPNESHIVPVMVGDP-EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTD  381 (407)
T ss_pred             HHHHHHHHHH-HHcCCCC---CCCCCCEEEEEeCCH-HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCH
Confidence            9999999999 6654221   123356777776553 467889999875 59999753       346899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINTM  237 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~  237 (242)
                      +|++++++.|+++++++
T Consensus       382 edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        382 EMIDHLVEALVEVWARL  398 (407)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999998765

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.94  E-value=1.3e-25  Score=192.00  Aligned_cols=221  Identities=16%  Similarity=0.253  Sum_probs=164.1

Q ss_pred             ccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548           4 QFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~   76 (242)
                      +..|+++|+++  +.+.   ++++++|++|+++|++|.+.|    +++|+++|++||+++|+||+|+ | ++..|.+. .
T Consensus       155 ~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~  229 (402)
T TIGR01821       155 KFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-A  229 (402)
T ss_pred             EEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-c
Confidence            45678888887  3332   246899999999999998877    9999999999999999999996 5 35555432 2


Q ss_pred             ccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548          77 HYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE-NMIENAYK  149 (242)
Q Consensus        77 ~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~~  149 (242)
                      ...++  .+|++  +|||+++.   ..||+++++++++.+.....  .++.+.++.+++++.++++.+++. .+.+..++
T Consensus       230 ~~~~~~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~  306 (402)
T TIGR01821       230 ERDGLMHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQE  306 (402)
T ss_pred             hhccCCCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            34443  35666  59999982   23678889888887764322  234457788889999999987654 35566778


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITEQ  221 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~e  221 (242)
                      +++++++.| ++++...   ..+.+.++.+.++.. ..+.++.+.|++ +||++.+.       +.+++|+++++.+|++
T Consensus       307 ~~~~l~~~L-~~~g~~~---~~~~~~i~~i~~~~~-~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~e  381 (402)
T TIGR01821       307 NVKRLKNLL-EALGIPV---IPNPSHIVPVIIGDA-ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDK  381 (402)
T ss_pred             HHHHHHHHH-HHcCCCc---CCCCCCEEEEEeCCH-HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHH
Confidence            899999999 6665221   123456777766543 356789999875 59998752       4478999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      |++++++.|+++++++
T Consensus       382 di~~~~~~l~~~~~~~  397 (402)
T TIGR01821       382 MIDDLVEALLLVWDRL  397 (402)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>KOG1405|consensus

Probab=99.94  E-value=6.1e-26  Score=180.98  Aligned_cols=209  Identities=26%  Similarity=0.364  Sum_probs=179.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEeecccc-CC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILGKALS-GG   95 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~sK~~~-~g   95 (242)
                      +..+++|++||+|+.||+.-.+++|++.|+++|++||+.+|+||+|+|.|.+|..|+.++|++  .||+++|||-|. ||
T Consensus       269 ~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG  348 (484)
T KOG1405|consen  269 KKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG  348 (484)
T ss_pred             CCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc
Confidence            347999999999999999999999999999999999999999999999999999999999987  689999999888 55


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC---CCCCeEee
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP---DIVPVVRG  172 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~  172 (242)
                      |     + -.++++- -.+..+..||.+.|.-...+.+.++.++.+++..+.++.++.+..+| .+|..   ......++
T Consensus       349 f-----f-h~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL-~~Lq~~~p~~~~~~RG  420 (484)
T KOG1405|consen  349 F-----F-HDEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGL-LELQAKYPGKINNLRG  420 (484)
T ss_pred             c-----c-cCcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhCchhhhcccc
Confidence            3     2 2322221 11233567888888877777788888888899999999999999999 77752   34556678


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .|.++.++.+.. ...+.+...++-+|+.+..|+...+||.|++..++-..+-+++++++.++.
T Consensus       421 rGTF~a~d~ps~-~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  421 RGTFIAWDCPSG-SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             cceEEEEeCCCh-HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence            999999999998 778889999999999999999999999999999999999999999998864

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=3.6e-25  Score=189.57  Aligned_cols=221  Identities=14%  Similarity=0.184  Sum_probs=165.9

Q ss_pred             ccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccccc
Q psy6548           4 QFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~~~   76 (242)
                      +..|||+|+++  +.+.   ++++++|++|++++++|.+.|    +++|.++|++||+++|+||+|+ |+ |+.|.++. 
T Consensus       155 ~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~-  229 (406)
T PRK13393        155 KRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIA-  229 (406)
T ss_pred             EEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchh-
Confidence            55689999987  3332   347899999999999998887    9999999999999999999995 64 77765442 


Q ss_pred             ccCCCC--CCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhcc-HHHHHHH
Q psy6548          77 HYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEEN-MIENAYK  149 (242)
Q Consensus        77 ~~~~~~--~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~~-~~~~~~~  149 (242)
                      ...++.  ++++  +|||+++.   ..||+++++++++.+.+....  .+.+.++.+++++.++++.++... ...++++
T Consensus       230 ~~~~~~~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~  306 (406)
T PRK13393        230 EREGLADRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQD  306 (406)
T ss_pred             hhcCCCCCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            444543  4666  69999992   236788888888877654433  244567788888889998776432 3455678


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITEQ  221 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~e  221 (242)
                      +++++++.| +.++...   .++.+.++.+.+... ....++.++|++ +||++.+.       +.+.+|+++++.+|++
T Consensus       307 ~~~~l~~~L-~~~g~~~---~~~~~~i~~v~~~~~-~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~e  381 (406)
T PRK13393        307 RVARLRARL-DKAGIPH---LPNPSHIVPVMVGDP-VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDA  381 (406)
T ss_pred             HHHHHHHHH-HHcCCCc---CCCCCCeEEEEeCCH-HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHH
Confidence            888999999 6554221   234566777766443 457889999987 59999642       3478999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      |++++++.|++++.++
T Consensus       382 did~l~~~l~~~~~~~  397 (406)
T PRK13393        382 DIEHLVQALSEIWARL  397 (406)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.92  E-value=7.2e-24  Score=181.75  Aligned_cols=221  Identities=14%  Similarity=0.225  Sum_probs=159.7

Q ss_pred             ccccCCCChhh--hcC---CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548           4 QFPVKSKQVPA--KLK---SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~---~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~   76 (242)
                      +..++++|.++  +.+   .++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ | ++..|.+. .
T Consensus       156 ~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~  230 (410)
T PRK13392        156 KQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-A  230 (410)
T ss_pred             EEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-h
Confidence            44567887766  222   3468999999999999998876    9999999999999999999997 4 34554432 2


Q ss_pred             ccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548          77 HYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIENAYK  149 (242)
Q Consensus        77 ~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~~  149 (242)
                      ...+.  .+|++  ++||+|+.   ..||+.+++++++.++.....  .+.+.++++++++.++++.++.. ...+.+++
T Consensus       231 ~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~  307 (410)
T PRK13392        231 ERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQD  307 (410)
T ss_pred             hhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            22333  34666  59999982   237788898888876654332  23345667788888889877543 34566788


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-------CCCEEEEeccCcCCHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-------SNNIIRLSPALNITEQ  221 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~lR~~~~~~~t~e  221 (242)
                      +++++++.| +.++...   .++.+.++.+.++.. ....++.++|+ ++||++.+.       +..++|++++..+|++
T Consensus       308 ~~~~l~~~L-~~~g~~~---~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~e  382 (410)
T PRK13392        308 RVAALKAKL-NANGIPV---MPSPSHIVPVMVGDP-TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDE  382 (410)
T ss_pred             HHHHHHHHH-HHcCCCC---CCCCCCEEEEEeCCH-HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHH
Confidence            888999999 6654221   123455555555543 35678999997 679999753       3468999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      |++++++.|+++++++
T Consensus       383 did~l~~aL~~~~~~~  398 (410)
T PRK13392        383 DIDALVAALVAIWDRL  398 (410)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999987753

>PRK07682 hypothetical protein; Validated

Probab=99.92  E-value=3.9e-24  Score=181.62  Aligned_cols=220  Identities=14%  Similarity=0.161  Sum_probs=156.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCCE---
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDI---   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~---   85 (242)
                      |+++ +...+++++++++++++|++|. +.+.+.+++|+++|++|++++|+||+|.++...+..... ...+....+   
T Consensus       143 d~~~l~~~~~~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~  221 (378)
T PRK07682        143 QPAQIEAAITAKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILI  221 (378)
T ss_pred             CHHHHHhhcCcccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEE
Confidence            3444 3333457888888888999995 667788999999999999999999999887544321111 111222233   


Q ss_pred             EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhc
Q psy6548          86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      .+|||.|+ +| +|+||+++++++++.+........++.+++++.++.++++...  .+...+.++++++.+.+.| +.+
T Consensus       222 ~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~  299 (378)
T PRK07682        222 SGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSF-NEI  299 (378)
T ss_pred             ecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence            33899999 89 9999999999999888754333345667788877777775321  1234566778888888888 555


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +  +....+..++++|+.++....+..++++.|+ ++||.+.|+      +++++|+++.  .+.+++++++++|++.++
T Consensus       300 ~--~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~  375 (378)
T PRK07682        300 G--LTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVE  375 (378)
T ss_pred             C--CccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHh
Confidence            3  2222344567888877542246788998876 679999875      2589999954  578999999999999887


Q ss_pred             HH
Q psy6548         236 TM  237 (242)
Q Consensus       236 ~~  237 (242)
                      ++
T Consensus       376 ~~  377 (378)
T PRK07682        376 NK  377 (378)
T ss_pred             hc
Confidence            54

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.92  E-value=2.8e-24  Score=173.84  Aligned_cols=218  Identities=15%  Similarity=0.154  Sum_probs=162.5

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-cccccccC--CCCCCEEE---e
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLAIHYE--DVRPDIVI---L   88 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~--~~~~~~~~---~   88 (242)
                      +.+.+.++++++++++|||+| +++++++|.+|.++|.+||+.+|+||+|+++...| ....+...  +.....++   -
T Consensus       152 ~~~~~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~sa  230 (388)
T COG1168         152 KAFVDERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSA  230 (388)
T ss_pred             HHHhcCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeec
Confidence            677788899999999999999 89999999999999999999999999999975555 22221111  11122222   5


Q ss_pred             ecccc-CCccchheeEeC-hhhhhccCC-CCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          89 GKALS-GGLYPISAVLAD-DEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~-~~~~~~l~~-~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      ||+|. +| +.+++++.+ +++..++.+ .........|.+++.|..++++..+.  +++.+.++.+++++.+.+.+.++
T Consensus       231 SKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P  309 (388)
T COG1168         231 SKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLP  309 (388)
T ss_pred             cccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            79999 89 899987755 555344332 22334445788999999999987765  67899999999999999966665


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-Ccee------ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVT------KPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~------~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..... .+..++..|+++..-+.+..+..+.|+++ +|.+      .+.+.+++|++  ..++.+-+++++++|..+++.
T Consensus       310 ~v~v~-~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         310 GVKVT-EPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRALKK  386 (388)
T ss_pred             CcEEe-cCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHHhc
Confidence            43233 34455788999888655556777777754 4554      44578999999  889999999999999988875


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      .
T Consensus       387 ~  387 (388)
T COG1168         387 R  387 (388)
T ss_pred             c
Confidence            3

>PRK07179 hypothetical protein; Provisional

Probab=99.92  E-value=1.5e-23  Score=179.70  Aligned_cols=220  Identities=16%  Similarity=0.222  Sum_probs=160.2

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~   79 (242)
                      +..++++|+++  +.+.+.++++|++++++|++|.+.|    +++|+++|++||+++|+||+|+.  ++..|.++ ...+
T Consensus       162 ~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~  236 (407)
T PRK07179        162 AHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAEL  236 (407)
T ss_pred             EEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhc
Confidence            45678899998  4444446889999999999998887    89999999999999999999963  33344332 2344


Q ss_pred             CCC--CCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Q psy6548          80 DVR--PDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE-NMIENAYKMGE  152 (242)
Q Consensus        80 ~~~--~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~~-~~~~~~~~~~~  152 (242)
                      ++.  +|+++  ++|+++   .++|++++++++++.+........+  +.++..++++.++++.+... +..++++++++
T Consensus       237 ~~~~~vdi~~~S~sK~~g---~~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~  313 (407)
T PRK07179        237 GLTSRVHFITASLAKAFA---GRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANAR  313 (407)
T ss_pred             CCCCCCCEEEeechHhhh---ccCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            542  36655  789997   4589999998887766532111112  22344455556677776553 46788999999


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC---CCCEEEEeccCcCCHHHHHH
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~---~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++++.| +.++..+    .+.+.++++.++.. .....+.+.|.++||.+.    |.   +.+.+|++++..+|++|+++
T Consensus       314 ~l~~~L-~~~g~~v----~~~~~i~~l~~~~~-~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~  387 (407)
T PRK07179        314 FLREGL-SELGYNI----RSESQIIALETGSE-RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR  387 (407)
T ss_pred             HHHHHH-HHcCCCC----CCCCCEEEEEeCCH-HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence            999999 6664211    23467788877653 456788899999999743    32   35799999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         226 GLDIIINTINTM  237 (242)
Q Consensus       226 ~~~~l~~~l~~~  237 (242)
                      +++.|++++++.
T Consensus       388 ~~~~l~~~~~~~  399 (407)
T PRK07179        388 VLEVCREARDEV  399 (407)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>PRK07505 hypothetical protein; Provisional

Probab=99.92  E-value=6.7e-24  Score=181.49  Aligned_cols=217  Identities=15%  Similarity=0.225  Sum_probs=149.5

Q ss_pred             cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc--cccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ--TGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~--~~~~~~g~~~~~~~   78 (242)
                      ++..+||+|+++  +.+.++...+++++|++++ |.+.+    +++|.++|++||+++|+||+|  .+++++|.++..+.
T Consensus       160 ~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~  234 (402)
T PRK07505        160 EVETIDHNDLDALEDICKTNKTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSE  234 (402)
T ss_pred             eEEEeCCCCHHHHHHHHhcCCCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHH
Confidence            467789999999  4455555778888887655 65665    899999999999999999999  45777776555556


Q ss_pred             CCC-CCCEE----EeeccccCCccchheeE-eChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHHHHhccHH---HHH
Q psy6548          79 EDV-RPDIV----ILGKALSGGLYPISAVL-ADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVILEENMI---ENA  147 (242)
Q Consensus        79 ~~~-~~~~~----~~sK~~~~g~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~~~~~~~~---~~~  147 (242)
                      ++. .+|.+    ++||+++++   .|+++ .++++++.+......++++++  +++++++.++++....+.+.   +.+
T Consensus       235 ~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l  311 (402)
T PRK07505        235 LDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKL  311 (402)
T ss_pred             cCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            665 56633    489999843   36665 467888877765566666544  57888888888866554433   223


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeE-EEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCC
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLN-AIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNIT  219 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t  219 (242)
                      +++.+.+...+ .  .     ...+.+.++ ++.+... ....++.+.|+++||++++.       +.+.+|+++++.+|
T Consensus       312 ~~~~~~~~~~~-~--~-----~~~g~~~~i~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t  382 (402)
T PRK07505        312 QNNIALFDSLI-P--T-----EQSGSFLPIRLIYIGDE-DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHT  382 (402)
T ss_pred             HHHHHHHHHHH-H--h-----cCCCCCCCEEEEEeCCH-HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCC
Confidence            23222222211 1  1     112233332 3333332 35788999999999999764       23689999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTINT  236 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~  236 (242)
                      +||++++++.|++++.+
T Consensus       383 ~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        383 NDEIKRLCSLLKEILDE  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.91  E-value=2.3e-23  Score=177.02  Aligned_cols=222  Identities=15%  Similarity=0.211  Sum_probs=153.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~   88 (242)
                      |++. +...+++++++++.+++|++|.+ .+.+.+++|+++|++||+++|+||+|.+|.. +........ .....+.+|
T Consensus       146 d~~~l~~~~~~~~~~v~l~~p~NptG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~  223 (380)
T PRK06225        146 TPELVKENMDENTRLIYLIDPLNPLGSS-YTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSF  223 (380)
T ss_pred             CHHHHHhhcCCCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeec
Confidence            3444 33335578888877778899854 4677899999999999999999999987632 211111110 111224458


Q ss_pred             ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      ||.++ +| +|+||+++++++++.+.+.. ..+++.+.+++.++.++++....  +...+..+++.+.+++.| +++...
T Consensus       224 SK~~g~~G-~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~  300 (380)
T PRK06225        224 SKIFGMAG-LRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAV-DEIEGV  300 (380)
T ss_pred             hhhcCCcc-ceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HhCcCC
Confidence            99998 89 99999999999988876532 23556677887777666653211  223344455566667777 554321


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .....+..|.++|+.++....+..++.+.|.++||.+.++       +.+++|+++  ..++|++++++++|+++++.++
T Consensus       301 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~~~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        301 FLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--SIPREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             ccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence            1222344577888888653246788999999999999875       346899994  4589999999999999999876


Q ss_pred             h
Q psy6548         239 A  239 (242)
Q Consensus       239 ~  239 (242)
                      +
T Consensus       379 ~  379 (380)
T PRK06225        379 T  379 (380)
T ss_pred             c
Confidence            5

>PRK07324 transaminase; Validated

Probab=99.91  E-value=2.3e-23  Score=176.39  Aligned_cols=219  Identities=17%  Similarity=0.207  Sum_probs=153.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~~   88 (242)
                      |+++ +...+++++++++++++|++|. +.+++.+++|+++|++||+++|+||+|.++...+.... ....+....+-+|
T Consensus       142 d~~~l~~~~~~~~kli~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~  220 (373)
T PRK07324        142 DLDELRRLVRPNTKLICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSM  220 (373)
T ss_pred             CHHHHHHhCCCCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecc
Confidence            4455 4444567899999999999995 55678899999999999999999999988754332111 1111111112339


Q ss_pred             ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      ||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+++..+.  +...+.++++++.+.+.| +..+ .
T Consensus       221 SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l-~~~~-~  297 (373)
T PRK07324        221 SKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWV-AKEP-R  297 (373)
T ss_pred             hhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH-hcCC-C
Confidence            99999 89 99999999999988887755555666777887777766653211  233455566666676777 4432 2


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +....+..|++.|+.++.. .+..+++++|+ ++||.+.|+.    ++++|++  +..+++.+++++++|++.+++
T Consensus       298 ~~~~~p~gg~~~~i~~~~~-~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        298 VSYVKPKAVSTSFVKLDVD-MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             ceEECCCceEEEEEEeCCC-CCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            2222233456667766654 46788999876 6799999873    5799999  456789999999999998875

>PLN00175 aminotransferase family protein; Provisional

Probab=99.91  E-value=2.7e-23  Score=178.09  Aligned_cols=214  Identities=17%  Similarity=0.213  Sum_probs=154.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCCEEE---eec
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVI---LGK   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~---~sK   90 (242)
                      +...+.+++++++.+++|++|. +.+++.+++|+++|++|++++|+||+|.++...+..... ...+....+++   |||
T Consensus       181 ~~~~~~~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK  259 (413)
T PLN00175        181 KAAFTSKTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGK  259 (413)
T ss_pred             HHhcCcCceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchh
Confidence            3333457899999999999995 557889999999999999999999999876433322111 11122223333   899


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      .|+ +| +|+||+++++++++.+.......+++.+.+.+.++.++++..+.  ++..+.++++++.+.+.| +..+  +.
T Consensus       260 ~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~  335 (413)
T PLN00175        260 TFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGL-KEVG--FK  335 (413)
T ss_pred             hccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--Ce
Confidence            999 89 99999999999988887644445677888888887777753211  345667778888888888 5553  22


Q ss_pred             CeEeeeceeEEEEecCCch-hHHHHHHHHH-HCCceeccC---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSIL-EVYDVCIKMK-DAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ...+..++++|+++...+. +..++++.|+ ++||.+.|+         +.+++|+++.  .+++++++++++|.+.++
T Consensus       336 ~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        336 VYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             ecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            2234457889998753212 4678989887 569999875         1468999954  589999999999998775

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.91  E-value=3.4e-23  Score=177.01  Aligned_cols=206  Identities=16%  Similarity=0.159  Sum_probs=149.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccCCCCCC---EEEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYEDVRPD---IVILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~~~~~~---~~~~sK~~~   93 (242)
                      .+++++++++.++|++|. +.+++.+++|+++|++||++||+||+|.+|...+... . ....+....   +-+|||.++
T Consensus       164 ~~~~k~v~l~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  242 (399)
T PRK07681        164 ADKAKMMILNFPGNPVPA-MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS  242 (399)
T ss_pred             cccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC
Confidence            457889999988999995 5567889999999999999999999998764333211 1 111111112   233899998


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+........++.+.+++.++.++++....  +...+.++++++.+.+.| +..+  +....
T Consensus       243 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~  318 (399)
T PRK07681        243 LAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGF-RTFG--WNVDK  318 (399)
T ss_pred             Ccc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccC
Confidence             99 99999999999988887543334566777888777777753211  233456677777788888 5543  22223


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +..|+++|++++.. .+..++++.|.+ +||.+.|+      +++++|+++.  .+++++++++++|++
T Consensus       319 p~~g~f~~~~l~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        319 PAGSMFVWAEIPKG-WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             CCeeeEEEEECCCC-CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            45689999998765 567889999987 89999875      2468999954  678999999999987

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.91  E-value=3.3e-23  Score=176.14  Aligned_cols=217  Identities=15%  Similarity=0.173  Sum_probs=153.3

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cccc-c-cccCCCCCCEE-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GKLL-A-IHYEDVRPDIV-   86 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~-~-~~~~~~~~~~~-   86 (242)
                      +++ +...+++++++++++++|++|.+ .+.+.+++|+++|++||+++|+||+|.++... +... . .........++ 
T Consensus       148 ~~~l~~~~~~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~  226 (382)
T PRK06108        148 LDRLLAAITPRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIF  226 (382)
T ss_pred             HHHHHHhcCccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEE
Confidence            444 33335578888888899999955 57788999999999999999999999876432 1111 1 11111122333 


Q ss_pred             --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                        +|||.++ +| +|+||+++++++++.+.......+.+.+++.+.++.++++....  ++..++++++++.+++.| +.
T Consensus       227 ~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  304 (382)
T PRK06108        227 VNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDAL-RA  304 (382)
T ss_pred             EeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence              3899998 88 99999999998888776543333445677787777777754221  345667777888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++. +....+..|+++|+.++.. .+..+++++|+ ++||.+.|+      +.+++|++++.  +++++++++++|++.+
T Consensus       305 ~~~-~~~~~p~~g~~~~~~l~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l  380 (382)
T PRK06108        305 LPG-VEVAKPDGAMYAFFRIPGV-TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFL  380 (382)
T ss_pred             CCC-CcccCCCeeEEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence            532 2222234577888888764 46778999886 579999775      35799999765  8999999999998876


Q ss_pred             H
Q psy6548         235 N  235 (242)
Q Consensus       235 ~  235 (242)
                      +
T Consensus       381 ~  381 (382)
T PRK06108        381 A  381 (382)
T ss_pred             h
Confidence            4

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=2.5e-23  Score=173.68  Aligned_cols=216  Identities=11%  Similarity=0.113  Sum_probs=146.1

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|.++.+.  +.+...+++++++++++||+|.+ .+.+.+++|+++|++||++||+||+|.+|...+........+.
T Consensus       103 v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~  181 (332)
T PRK06425        103 ISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNL-ISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRS  181 (332)
T ss_pred             EEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCc-cCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhcc
Confidence            34455543211  33334577888888999999964 5678899999999999999999999988743331111111111


Q ss_pred             CCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~  156 (242)
                      .+++++   |||+++ +| +|+||+++++++++.+...  ...+..+.+++.+.. ....-. .+...+.+++.++.+.+
T Consensus       182 ~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~r~~l~~  257 (332)
T PRK06425        182 YGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKHSLDIMENERSYLIN  257 (332)
T ss_pred             CCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence            234433   899999 99 9999999999998888763  223444444432221 111100 12356677788888888


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      .| +.++  +....++.|.++|+.++    +..++++.|.++||.+.++      +++++|++   ..+.++++++++.|
T Consensus       258 ~L-~~~g--~~~~~~~~g~f~~~~~~----~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al  327 (332)
T PRK06425        258 NL-EAMG--FRAAGDPSANFITFMIP----DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNAL  327 (332)
T ss_pred             HH-HHCC--CEECCCCCceEEEEEcC----CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHH
Confidence            88 5553  21112345778888876    3578999999999999875      24699999   44789999999999


Q ss_pred             HHHH
Q psy6548         231 INTI  234 (242)
Q Consensus       231 ~~~l  234 (242)
                      ++++
T Consensus       328 ~~~~  331 (332)
T PRK06425        328 RNFL  331 (332)
T ss_pred             HHHh
Confidence            8775

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.91  E-value=4.6e-23  Score=176.38  Aligned_cols=222  Identities=13%  Similarity=0.150  Sum_probs=153.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCC-CCEEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVR-PDIVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~-~~~~~   87 (242)
                      |++. +...++++++++++.++|++|. +.+.+.+++|+++|++||++||+||+|.++...+... ....+... ..+++
T Consensus       167 d~~~l~~~~~~~~k~v~l~~P~NPTG~-~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~  245 (405)
T PRK06207        167 DLDQLEEAFKAGVRVFLFSNPNNPAGV-VYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVIT  245 (405)
T ss_pred             CHHHHHHhhhhcCeEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEE
Confidence            3444 3333456788888888999995 5567889999999999999999999998874434221 11111221 22332


Q ss_pred             ---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548          88 ---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        88 ---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                         |||+++ +| +|+||+++++++++.+.........+.+.+.+.++.++++...  -++..+..+++++.+.+.| +.
T Consensus       246 i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~  323 (405)
T PRK06207        246 IMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVL-RG  323 (405)
T ss_pred             EecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence               899999 99 9999999999988888754333444556677777666664210  1223445555666676777 44


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +. .+....+..|+++|++++....+..++++.|. ++||.+.|+      +.+++|+++.  .+.+++++++++|.+.+
T Consensus       324 ~~-~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l  400 (405)
T PRK06207        324 VE-GVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLI  400 (405)
T ss_pred             CC-CceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence            42 22222345688999998752135678999997 679999886      2578999954  57899999999999998


Q ss_pred             HHHh
Q psy6548         235 NTMA  238 (242)
Q Consensus       235 ~~~~  238 (242)
                      ++.+
T Consensus       401 ~~~~  404 (405)
T PRK06207        401 ERYR  404 (405)
T ss_pred             HHhh
Confidence            7754

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.91  E-value=2.7e-23  Score=173.38  Aligned_cols=217  Identities=14%  Similarity=0.165  Sum_probs=163.0

Q ss_pred             ccccCCC----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           4 QFPVKSK----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         4 ~~~~~~~----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      ++.+|.+    |+++ ....++++.+|++++++||||. ..+.+.++++.+.+.+ +.++|+||+|.+|..  .. ....
T Consensus       123 ~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~-~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~~-~~~l  197 (356)
T COG0079         123 VVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGT-LLPREELRALLEALPE-GGLVVIDEAYIEFSP--ES-SLEL  197 (356)
T ss_pred             EEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--ch-hhhh
Confidence            4556663    3444 3333448999999999999995 4456778888888888 999999999998855  21 1122


Q ss_pred             CCCCCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q psy6548          79 EDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEI  153 (242)
Q Consensus        79 ~~~~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~  153 (242)
                      ....+++++   |||+|| +| +|+||+++++++++.+.+  ....|+.|.++++++.++++.-.. +...+.+.+.+.+
T Consensus       198 ~~~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~r  274 (356)
T COG0079         198 LKYPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDADYLEESVERIREERER  274 (356)
T ss_pred             ccCCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            222333554   999999 99 999999999999999987  666788899999999888774421 3456667777777


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +.+.| +.++  .....++.++|++++.+.. . +..+.++|.++||+++.++     ++++|++   ..|+|+.+++++
T Consensus       275 l~~~l-~~~~--~~~v~pS~aNFvlv~~~~~-~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~  346 (356)
T COG0079         275 LYAAL-KALG--LFGVFPSQANFVLVRVPDA-E-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLA  346 (356)
T ss_pred             HHHHH-HhCC--CCeecCCCCcEEEEECCCc-c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHH
Confidence            77777 6554  1112344588999998874 4 7789999999999999773     3599999   568899999999


Q ss_pred             HHHHHHHH
Q psy6548         229 IIINTINT  236 (242)
Q Consensus       229 ~l~~~l~~  236 (242)
                      .|+++++.
T Consensus       347 AL~~~~~~  354 (356)
T COG0079         347 ALREVLKG  354 (356)
T ss_pred             HHHHHHhc
Confidence            99988764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.91  E-value=7e-23  Score=174.50  Aligned_cols=224  Identities=13%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCCCCE---
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVRPDI---   85 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~~~~---   85 (242)
                      +++ +...+++++++++.+++|++|.+. +.+.+++|+++|++||+++|+||+|.++...+... .. ...+....+   
T Consensus       150 ~~~l~~~i~~~~klv~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (389)
T PRK05957        150 PEAIEQAITPKTRAIVTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISL  228 (389)
T ss_pred             HHHHHHhcCcCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEE
Confidence            444 344456788988999999999554 56789999999999999999999998764332211 11 111222233   


Q ss_pred             EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhc
Q psy6548          86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      .+|||.++ +| +|+||+++++++++++.........+.+.+++.++..+++...  -++..+.++++++.+.+.| +.+
T Consensus       229 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~~  306 (389)
T PRK05957        229 YSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSL-GQL  306 (389)
T ss_pred             ecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            33899998 89 9999999999999888764433344556677777666664211  1234456777888888888 555


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +.......+..|+++|++++.. .+..++++.|. ++||.+.|+.      .+++|+++.. .+++++++++++|.+.++
T Consensus       307 ~~~~~~~~~~gg~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~  384 (389)
T PRK05957        307 QDRCTLHPANGAFYCFLKVNTD-LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLK  384 (389)
T ss_pred             CCCccccCCCeeEEEEEeCCCC-CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence            4211223345578899998765 56788999987 5899999862      4589999643 478899999999999988


Q ss_pred             HHhhh
Q psy6548         236 TMAAK  240 (242)
Q Consensus       236 ~~~~~  240 (242)
                      .+.+|
T Consensus       385 ~~~~~  389 (389)
T PRK05957        385 TIVQQ  389 (389)
T ss_pred             hhhcC
Confidence            86543

>PLN02483 serine palmitoyltransferase

Probab=99.91  E-value=1e-22  Score=177.32  Aligned_cols=223  Identities=18%  Similarity=0.255  Sum_probs=160.4

Q ss_pred             cccccCCCChhh--hcCC------CCC------EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-
Q psy6548           3 LQFPVKSKQVPA--KLKS------NPN------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-   66 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~------~~~------~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-   66 (242)
                      .+..||+||+++  +.+.      .++      ..+|++|+++++.|.+.+    +++|+++|++||+++|+||+|+ + 
T Consensus       208 ~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~  283 (489)
T PLN02483        208 TIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGA  283 (489)
T ss_pred             eEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCc
Confidence            456789998876  2221      122      358899999999998876    9999999999999999999996 2 


Q ss_pred             cCccCcccccccCCCC---CCEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q psy6548          67 LGRTGKLLAIHYEDVR---PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVIL  139 (242)
Q Consensus        67 ~~~~g~~~~~~~~~~~---~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~  139 (242)
                      +|++|.+ ..+.+++.   .|++  +|||+|++   ..||+++++++++.++......++  +.++..+.++.++++.+.
T Consensus       284 ~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~  359 (489)
T PLN02483        284 VGKTGRG-VCELLGVDPADVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVIL  359 (489)
T ss_pred             cCCCCCc-hHHhcCCCcccCcEEEEecchhccc---CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHH
Confidence            3444443 22344443   3555  49999982   348899999999998865444333  335555556677787654


Q ss_pred             hc-------cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------
Q psy6548         140 EE-------NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------  205 (242)
Q Consensus       140 ~~-------~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------  205 (242)
                      .+       +..+.++++++++++.| ++++-  .......++++++.+... .+..++++.|+++||.+.+.       
T Consensus       360 ~~~g~~~~~~~~~~l~~~~~~l~~~L-~~~G~--~v~~~~~sp~~~l~l~~~-~~~~~~~~~Ll~~GI~v~~~~fp~~p~  435 (489)
T PLN02483        360 GEDGTNRGAQKLAQIRENSNFFRSEL-QKMGF--EVLGDNDSPVMPIMLYNP-AKIPAFSRECLKQNVAVVVVGFPATPL  435 (489)
T ss_pred             hCccccchHHHHHHHHHHHHHHHHHH-HHCCC--cccCCCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEeeeCCCCCCC
Confidence            21       34677888999999999 66542  111123346677766654 46778999999999999742       


Q ss_pred             CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 ~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..+.+|+++++.+|+|++++++++|+++++.+
T Consensus       436 ~~~~vRi~isa~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        436 LLARARICISASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            23689999999999999999999999988765

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.91  E-value=4.7e-23  Score=175.28  Aligned_cols=216  Identities=18%  Similarity=0.229  Sum_probs=152.3

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~--   87 (242)
                      +++ +...+++++++++++++|++|. +.+.+.+++|.++|++||++||+||+|.++...+........ +...++++  
T Consensus       152 ~~~l~~~~~~~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~  230 (384)
T PRK06348        152 VKKLEALITSKTKAIILNSPNNPTGA-VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFG  230 (384)
T ss_pred             HHHHHHhhCcCccEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEe
Confidence            444 3333457788888888999995 557788999999999999999999999886433221111111 22223333  


Q ss_pred             -eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          88 -LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       |||.++ +| +|+||+++++++++.+........++.+++++.++..+++..+.  +.+.+.++++++.+.+.| +.++
T Consensus       231 SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L-~~~~  308 (384)
T PRK06348        231 SFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRI-ESIP  308 (384)
T ss_pred             cchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence             899999 89 99999999998888777544445667788888887777653221  234566677777788888 5553


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      . .....+..|+++|++++....+..++++.|. +.||.+.|+      +++++|++.  ..+++++++++++|++.
T Consensus       309 ~-~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        309 N-LSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             C-ceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            2 2222344678889998743246788998887 569999875      257999995  45889999999998653

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.91  E-value=1.7e-22  Score=172.34  Aligned_cols=222  Identities=18%  Similarity=0.281  Sum_probs=157.8

Q ss_pred             ccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccc
Q psy6548           4 QFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLL   74 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~   74 (242)
                      .+.++++|+++  +.+.+   .  ++++|++++++|++|.+.+    +++|+++|++||+++|+||+|. |+ +..+.+ 
T Consensus       146 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-  220 (393)
T TIGR01822       146 RYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-  220 (393)
T ss_pred             eEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-
Confidence            34567888888  33432   2  7899999999999998776    9999999999999999999994 32 233322 


Q ss_pred             ccccCCC--CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHh-ccHHHHH
Q psy6548          75 AIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILE-ENMIENA  147 (242)
Q Consensus        75 ~~~~~~~--~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~-~~~~~~~  147 (242)
                      .....+.  .+|+++  +||+++|  +++||+.+++++++.+.+......++  .++..++++.++++.++. ++..+++
T Consensus       221 ~~~~~~~~~~~di~~~s~sK~l~g--~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  298 (393)
T TIGR01822       221 SHELCGVMGRVDIITGTLGKALGG--ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRL  298 (393)
T ss_pred             hHHhcCCCCCCeEEEEEChHHhhC--CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            1122232  356664  8899874  68999999999888776532222222  345555566777776643 4577889


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCH
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITE  220 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~  220 (242)
                      +++++++++.| +..+-...   .+.+.++.+.++.. .+..++++.|.++||.+..       .+...+|+++++.+|+
T Consensus       299 ~~~~~~l~~~L-~~~g~~~~---~~~~~~~~i~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~  373 (393)
T TIGR01822       299 WANTRYFRERM-EAAGFDIK---PADHPIIPVMLYDA-VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTE  373 (393)
T ss_pred             HHHHHHHHHHH-HHcCCCCC---CCCCCEEEEEeCCH-HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCH
Confidence            99999999999 65532111   12344555555543 4678899999999999862       1345799999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINTM  237 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~  237 (242)
                      +|+++++++|+++.+++
T Consensus       374 edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       374 EQLDRAVEAFTRIGREL  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG1360|consensus

Probab=99.91  E-value=1e-22  Score=165.03  Aligned_cols=222  Identities=16%  Similarity=0.229  Sum_probs=173.7

Q ss_pred             cccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCcccc
Q psy6548           3 LQFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~~~~   75 (242)
                      +.+.|.|||++.  +.++   ...+++|.+|.+++|+|.+.|    ++||.+++++||++-++||+| .| +|..|.+..
T Consensus       280 ~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvg  355 (570)
T KOG1360|consen  280 PKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVG  355 (570)
T ss_pred             cceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCcc
Confidence            567899999999  4443   567889999999999999999    999999999999999999999 45 455554332


Q ss_pred             cccCCC--CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHhc---cHHHH
Q psy6548          76 IHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILEE---NMIEN  146 (242)
Q Consensus        76 ~~~~~~--~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~~---~~~~~  146 (242)
                       ++.|+  ..|+++  ++|+||   .-.||+.++..+++.++....+..|+  .+|.-+++|++++++++.+   .++..
T Consensus       356 -erdGvm~kvDiIsGTLgKafG---cVGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~  431 (570)
T KOG1360|consen  356 -ERDGVMHKVDIISGTLGKAFG---CVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQ  431 (570)
T ss_pred             -ccCCcchhhhhcccchhhhcc---cccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHH
Confidence             44554  456776  889999   33456889999999998877666554  5677888899999998764   25566


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceec-------cCCCCEEEEeccCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTK-------PISNNIIRLSPALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~-------~~~~~~lR~~~~~~~  218 (242)
                      -+++.++++..| .+++-.   ..+.-+.++.+.+.+. ..+.+..+.|+ ++||++-       +.|...+|+.|+-.+
T Consensus       432 hqrnv~~~kq~l-~~~GiP---Vi~~pSHIiPv~vgda-~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~H  506 (570)
T KOG1360|consen  432 HQRNVKYVKQLL-MELGIP---VIPNPSHIIPVRVGDA-ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHH  506 (570)
T ss_pred             HHHHHHHHHHHH-HHcCCc---ccCCCcceeeeeccCH-HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCC
Confidence            667788888888 666632   2233456778888776 67788888888 4699884       347889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTINTM  237 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~  237 (242)
                      |++.++.+++.+..+.+++
T Consensus       507 T~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  507 TPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             CHHHHHHHHHHHHHHHHHc
Confidence            9999999999999988875

>KOG1359|consensus

Probab=99.90  E-value=1.8e-22  Score=157.74  Aligned_cols=209  Identities=18%  Similarity=0.262  Sum_probs=159.9

Q ss_pred             CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCcccccccCCC--CCCEEE--eec
Q psy6548          17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV--RPDIVI--LGK   90 (242)
Q Consensus        17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~~~~~~~~~~--~~~~~~--~sK   90 (242)
                      ..+.+.++|..+++++|.|++.|    +++|.+++++||+++++||+| +| ||.+|.+-. +.++.  .+|++.  ++|
T Consensus       189 a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~vm~~vdiinsTLgK  263 (417)
T KOG1359|consen  189 ACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEFGVMGDVDIINSTLGK  263 (417)
T ss_pred             hhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHhCCCCcceehhhhhhh
Confidence            34678999999999999999999    999999999999999999999 56 577776533 56665  345443  899


Q ss_pred             cccCCccchheeEeChhhhhccCCCCCCCCCCCCH--HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          91 ALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNP--LACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      ++||.  ..||..+++.++..+++....+.|+.+.  .-...+.++++.+. +....+..+.+.+++++.+ ..-+-   
T Consensus       264 AlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~m-e~aGf---  337 (417)
T KOG1359|consen  264 ALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFM-EAAGF---  337 (417)
T ss_pred             hhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhcCc---
Confidence            99953  4678999999999998876666665442  22223445666554 4557788888999999988 44331   


Q ss_pred             CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec-------cCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-------PISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-------~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +-.....++..+.+.+. +.+..+++.|+++||++-       |.+...+|+..+..||+|||+++++++.++....
T Consensus       338 tIsg~~hPI~pv~lGda-~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~  413 (417)
T KOG1359|consen  338 TISGASHPICPVMLGDA-RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL  413 (417)
T ss_pred             eecCCCCCccceecccH-HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence            11112235666777776 788899999999999983       4577889999999999999999999999887654

>PRK08068 transaminase; Reviewed

Probab=99.90  E-value=1.6e-22  Score=172.25  Aligned_cols=206  Identities=13%  Similarity=0.132  Sum_probs=143.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccc-cccCCCCCC-E--EEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLA-IHYEDVRPD-I--VILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~-~~~~~~~~~-~--~~~sK~~~   93 (242)
                      .++++++++.+++|++| ...+.+.+++|+++|++||+++|+||+|.++...+. ... ....+.... +  .+|||.|+
T Consensus       165 ~~~~~~v~l~~P~NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g  243 (389)
T PRK08068        165 AEKAKLMYLNYPNNPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN  243 (389)
T ss_pred             cccceEEEEECCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC
Confidence            45788888887799999 466778899999999999999999999987644432 111 122222222 2  23999998


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+.........+.+++.+.++.+++.....  +...+.++++++.+.+.| +.++  +....
T Consensus       244 ~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L-~~~g--~~~~~  319 (389)
T PRK08068        244 MAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISAC-REIG--WEVDA  319 (389)
T ss_pred             Ccc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccC
Confidence             89 99999999999988886543333334444455555555432111  345677778888888888 6654  22223


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +..|+++|+.++.. .+..++++.|.+ +||.+.|+      +.+++|++.  ..+++++++++++|.+
T Consensus       320 ~~g~~~~~v~~~~~-~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~  385 (389)
T PRK08068        320 PKGSFFAWMPVPKG-YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVERIGK  385 (389)
T ss_pred             CCeeEEEEEECCCC-CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHHHHHH
Confidence            34567889998764 467899999986 69999875      257999995  4567788888888765

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2.6e-22  Score=169.86  Aligned_cols=210  Identities=12%  Similarity=0.088  Sum_probs=149.1

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eeccc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKAL   92 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~   92 (242)
                      .+.+++++++++..++|++|.+ .+.+.++++.++|+ ++++||+||+|.++...+....+.  ...+++++   |||.+
T Consensus       150 ~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~  225 (369)
T PRK08153        150 AARRENAPLVYLANPDNPMGSW-HPAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAY  225 (369)
T ss_pred             HhcccCCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhc
Confidence            3445678888888889999854 46677888888886 499999999998875443211111  12334433   99999


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      + +| +|+||+++++++++.+....  .+++.+++++.++.++++..+ .+...+.++++++.+.+.| +..+  . ...
T Consensus       226 g~~G-lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L-~~~g--~-~~~  298 (369)
T PRK08153        226 GLAG-ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIA-RANG--L-TPL  298 (369)
T ss_pred             cCcc-hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC--C-ccC
Confidence            9 89 99999999999988776532  346788899888888775211 1223455556666666666 4443  2 223


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceec-cC---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-PI---SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +..+++++++++.+...+.++.++|.++||.++ |+   +.+++|+++   .++++++++++.|++++..+++
T Consensus       299 p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~---~~~~~~~~~~~al~~~~~~~~~  368 (369)
T PRK08153        299 PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSC---GPDEELDLFAEALPEALEAARK  368 (369)
T ss_pred             CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHHHhhc
Confidence            456788888875432467889999999999995 43   246899993   3789999999999999876543

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.90  E-value=6.6e-22  Score=168.18  Aligned_cols=220  Identities=20%  Similarity=0.268  Sum_probs=157.9

Q ss_pred             cccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548           3 LQFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI   76 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~   76 (242)
                      ++..+|.+|+++  +.+.+  +++++++++++++++|...+    +++|+++|++||+++|+||+|. + ++..|.....
T Consensus       146 ~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~  221 (385)
T PRK05958        146 RVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA  221 (385)
T ss_pred             ceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHH
Confidence            345677788887  44433  25888999999999996655    9999999999999999999995 3 3333332211


Q ss_pred             -ccCCCCCC---EEEeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHH
Q psy6548          77 -HYEDVRPD---IVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMIENAYK  149 (242)
Q Consensus        77 -~~~~~~~~---~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~  149 (242)
                       ......++   +.++||+++.   +.||+++++++++.+....  ...+.+.++++++++.++++.++. +++.+++++
T Consensus       222 ~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~  298 (385)
T PRK05958        222 EAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAA  298 (385)
T ss_pred             hhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence             01222345   3448999972   3478888888877664321  222334667777777888887765 367788999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQE  222 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~  222 (242)
                      +++++++.| +.++-.   ..++.+.++++.++.. .+..++.+.|.++||.+.+.       +++++|++++..+++++
T Consensus       299 ~~~~l~~~L-~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~  373 (385)
T PRK05958        299 LIARLRAGL-RALGFQ---LMDSQSAIQPLIVGDN-ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEAD  373 (385)
T ss_pred             HHHHHHHHH-HHcCCC---cCCCCCCEEEEEeCCH-HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHH
Confidence            999999999 665421   1234567788887654 56778999999999999752       34689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTI  234 (242)
Q Consensus       223 i~~~~~~l~~~l  234 (242)
                      +++++++|++++
T Consensus       374 i~~~l~~l~~~~  385 (385)
T PRK05958        374 IDRLLEALAEAL  385 (385)
T ss_pred             HHHHHHHHHhcC
Confidence            999999998753

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.90  E-value=2e-22  Score=169.42  Aligned_cols=213  Identities=14%  Similarity=0.143  Sum_probs=146.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---   86 (242)
                      |+++ +.....+++++++++++|++|. ..+.+.+++|+++|++||+++|+||+|.++...+........+. ..++   
T Consensus       125 d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~  202 (350)
T TIGR03537       125 RLEKVEKSILEETKIVWINYPHNPTGA-TAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAFH  202 (350)
T ss_pred             CHHHHHHhhhhccEEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEEe
Confidence            4454 3333457888999989999994 55678899999999999999999999976532222211111121 2232   


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      ++||.++ +| +|+||+++++++++.+.......+.+.+++++.++.+++.... .....+.++++++.+.+.| +..+ 
T Consensus       203 s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l-~~~g-  279 (350)
T TIGR03537       203 SLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFF-NKVG-  279 (350)
T ss_pred             ecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-HHCC-
Confidence            3899997 88 9999999999888877754333344455566666655543111 1234566667777777777 4443 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                       .....+..|+++|++++.. .+..+++++|.++||.+.++      ..+++|++.  ..+++++++++++|++
T Consensus       280 -~~~~~~~g~~~~~~~~~~~-~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       280 -LEYLYPDATFYLWVKVPSG-IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             -CcccCCCeEEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence             2222344577889998864 56789999999999999875      257899994  4688999999998865

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.90  E-value=2.8e-22  Score=170.79  Aligned_cols=208  Identities=13%  Similarity=0.174  Sum_probs=142.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc--cccccCC-CCCCEE---Eeeccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL--LAIHYED-VRPDIV---ILGKAL   92 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~-~~~~~~---~~sK~~   92 (242)
                      ..+++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+..  ....... ....++   +|||.+
T Consensus       163 ~~~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  241 (388)
T PRK07366        163 LAQARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY  241 (388)
T ss_pred             cccceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc
Confidence            346788899999999995 557788999999999999999999999887433321  1111111 112222   499999


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      + +| +|+||+++++++++.+........++..+..+.++.+++...+  -+...+.++++++.+.+.| +.++  +...
T Consensus       242 g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L-~~~~--~~~~  317 (388)
T PRK07366        242 NMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINAL-HQIG--WPVP  317 (388)
T ss_pred             CCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--Cccc
Confidence            7 99 9999999999998888754333333333333334444443111  1335666777788888888 5553  2223


Q ss_pred             EeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .+..|+++|++++... .+..++++.|. ++||.+.|+      +.+++|++.  ..+++++++++++|++.
T Consensus       318 ~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        318 LPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAF  387 (388)
T ss_pred             CCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHh
Confidence            3557899999987631 23567877774 679999886      247899995  45789999999999764

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.90  E-value=1.9e-22  Score=172.66  Aligned_cols=222  Identities=15%  Similarity=0.181  Sum_probs=152.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCC-EE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPD-IV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~-~~-   86 (242)
                      |++. +....++++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.++...+....+ ...+.... ++ 
T Consensus       168 d~~~l~~~~~~~~k~i~l~nP~NPTG~-v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i  246 (410)
T PRK06290        168 DLDSIPKDIKEKAKLLYLNYPNNPTGA-VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEI  246 (410)
T ss_pred             CHHHHHHhhcccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEE
Confidence            4444 3333457889998888999995 557788999999999999999999999876333221111 11111112 33 


Q ss_pred             -Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          87 -ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        87 -~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       +|||.++ +| +|+||+++++++++.+.........+.+.+++.++.++++..+ .+...+.++++++.+.+.| +..+
T Consensus       247 ~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g  324 (410)
T PRK06290        247 HSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKIL-NEVG  324 (410)
T ss_pred             eechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence             3999997 89 9999999999998888754333444455567776666665321 1335666777888888888 5553


Q ss_pred             CCCCCeEeeeceeEEEEecCCc------hhHHHHHHHHHHCCcee-ccC--CCCEEEEecc-CcCCHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSI------LEVYDVCIKMKDAGLVT-KPI--SNNIIRLSPA-LNITEQELREGLDIIINT  233 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~-~~~--~~~~lR~~~~-~~~t~e~i~~~~~~l~~~  233 (242)
                        +....+..++++|+.++...      .+..+++++|.++|+++ .|+  .++++|++.. ...++|+.+++++.|++.
T Consensus       325 --~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~  402 (410)
T PRK06290        325 --FKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRR  402 (410)
T ss_pred             --CeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHH
Confidence              22222345788888887531      25778999999886544 454  2468999943 234889999999999999


Q ss_pred             HHHH
Q psy6548         234 INTM  237 (242)
Q Consensus       234 l~~~  237 (242)
                      ++++
T Consensus       403 ~~~~  406 (410)
T PRK06290        403 LSDV  406 (410)
T ss_pred             Hhhc
Confidence            9875

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=2.3e-22  Score=170.16  Aligned_cols=205  Identities=16%  Similarity=0.145  Sum_probs=142.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~   91 (242)
                      +.+.+++++++++++++|++|.+.+    .+++.++++.+++++|+||+|.+|++.+........+..++++   +|||+
T Consensus       154 ~~~~~~~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~  229 (368)
T PRK03317        154 AAIAEHRPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKA  229 (368)
T ss_pred             HHHhccCCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhh
Confidence            4444557778888899999997665    4555556666689999999999886554332223333345655   59999


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      ++ +| +|+||+++++++++.+....  .+++.+++++.++.++++.... .+..+.++++++.+.+.| +..+  ....
T Consensus       230 ~g~~G-lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~  303 (368)
T PRK03317        230 FAFAG-GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWL-RELG--LRVA  303 (368)
T ss_pred             hccch-hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH-HHCC--CEeC
Confidence            98 89 99999999999998887633  4667888998888888764322 223345566666777777 4443  2111


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+..++++|..+.    +..++.+.|.++||.+.+.+ ++++|+++   .+.++++++++.|+++++.
T Consensus       304 ~~~~~~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~---~~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        304 PSDANFVLFGRFA----DRHAVWQGLLDRGVLIRDVGIPGWLRVTI---GTPEENDAFLAALAEVLAT  364 (368)
T ss_pred             CCCCcEEEEeccC----CHHHHHHHHHHCCEEEEeCCCCCeEEEec---CCHHHHHHHHHHHHHHHHH
Confidence            1223444443432    35789999999999998754 57999993   3788999999999988764

>PRK09082 methionine aminotransferase; Validated

Probab=99.90  E-value=2.3e-22  Score=171.16  Aligned_cols=215  Identities=13%  Similarity=0.164  Sum_probs=149.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cc-cccCCCCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LA-IHYEDVRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~-~~~~~~~~~~~-   86 (242)
                      |+++ +...+++++++++++++|++|.+ .+.+.++++.++|++||+++|+||+|.++...+.. .. ....+....++ 
T Consensus       152 d~~~l~~~~~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~  230 (386)
T PRK09082        152 DWQRFAAAISPRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFV  230 (386)
T ss_pred             CHHHHHHhcCccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEE
Confidence            3444 33334578888888889999954 46788999999999999999999999876433321 11 11222223333 


Q ss_pred             --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                        +|||.++ +| +|+||+++++++++.+........++.+.+++.++.+.++...  .+.+.+.++++++.+.+.| +.
T Consensus       231 ~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~  308 (386)
T PRK09082        231 VSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL-AN  308 (386)
T ss_pred             Eeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence              3899997 89 9999999999998888765444556677777776555554111  1234556677888888888 54


Q ss_pred             cCCCCCCeEeeeceeEEEEecC-CchhHHHHHHHH-HHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDK-SILEVYDVCIKM-KDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      .+  +....+..|+++|++++. +..+..++++.| .++||.+.|+        +.+++|++.  ..+++++++++++|+
T Consensus       309 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~  384 (386)
T PRK09082        309 SR--FKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLC  384 (386)
T ss_pred             CC--CcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHh
Confidence            43  222334567889998873 114678898886 5779999875        246899995  458899999999886


Q ss_pred             H
Q psy6548         232 N  232 (242)
Q Consensus       232 ~  232 (242)
                      +
T Consensus       385 ~  385 (386)
T PRK09082        385 Q  385 (386)
T ss_pred             h
Confidence            4

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.90  E-value=8.6e-22  Score=168.19  Aligned_cols=222  Identities=16%  Similarity=0.283  Sum_probs=155.6

Q ss_pred             ccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccc
Q psy6548           4 QFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLL   74 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~   74 (242)
                      ++.++++|+++  +.+.+   +  ++++|+++++++++|...+    +++|+++|++||+++|+||+|+ ++ +..+.+ 
T Consensus       150 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-  224 (397)
T PRK06939        150 RYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-  224 (397)
T ss_pred             eEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-
Confidence            45567788887  33322   3  7889999999999996443    9999999999999999999994 33 222321 


Q ss_pred             ccccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHh-ccHHHHH
Q psy6548          75 AIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILE-ENMIENA  147 (242)
Q Consensus        75 ~~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~-~~~~~~~  147 (242)
                      .....++  .++++  ++||+++|  +++||+++++++++.+.+......+  +.++..++++.++++.+.. +++.+++
T Consensus       225 ~~~~~~~~~~~~i~~~S~sK~~~g--~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  302 (397)
T PRK06939        225 TVEHFGVMDRVDIITGTLGKALGG--ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRL  302 (397)
T ss_pred             HHHHcCCCCCCcEEEEECHHHhCc--cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            1222333  34566  48999964  5789999999988887653222222  2334455666777776654 3567888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCH
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITE  220 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~  220 (242)
                      +++++.+++.| +.++...   ..+.+.++++.++.. .+..++++.|.++||.+.+.       +.+++|+++++.+++
T Consensus       303 ~~~~~~l~~~L-~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~  377 (397)
T PRK06939        303 WENARYFREGM-TAAGFTL---GPGEHPIIPVMLGDA-KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTK  377 (397)
T ss_pred             HHHHHHHHHHH-HHcCCCc---CCCCCCEEEEEECCH-HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCH
Confidence            89999999999 6654211   112344444445443 46788999999999988642       246899999998999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINTM  237 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~  237 (242)
                      +++++++++|+++++++
T Consensus       378 ~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        378 EQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.90  E-value=3.2e-22  Score=170.25  Aligned_cols=206  Identities=14%  Similarity=0.203  Sum_probs=142.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCC---CCEEEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVR---PDIVILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~---~~~~~~sK~~~   93 (242)
                      .++++++++++++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+... .. ...+..   ..+.+|||.|+
T Consensus       164 ~~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  242 (385)
T PRK09276        164 AKKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN  242 (385)
T ss_pred             cccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence            457889999988999995 5577889999999999999999999998764332211 11 111111   12334999998


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+.........+.+.+.+.++.++++..+.  +...+.++++++.+.+.| +..+  +....
T Consensus       243 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~~~~~  318 (385)
T PRK09276        243 MTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGL-RKLG--LEVEP  318 (385)
T ss_pred             Ccc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH-HhCC--CcccC
Confidence             89 99999999999888876532222334455666666666542111  234566677777788888 5543  22222


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +..++++|+.++.. .+..+++++|+ ++||.+.|+      +++++|+++  ..+++++.+++++|.+
T Consensus       319 ~~~~~~~~v~~~~~-~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        319 PKATFYVWAPVPKG-YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVERIKK  384 (385)
T ss_pred             CCcceEEEEECCCC-CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHhh
Confidence            34577889998765 56788888887 579999886      247999995  4578888888888754

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.89  E-value=3.6e-22  Score=172.32  Aligned_cols=206  Identities=16%  Similarity=0.123  Sum_probs=148.5

Q ss_pred             CCCEEEEEEc-ccccCCCcccCCHHHHHHHHHHHHhh-CCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc
Q psy6548          19 NPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e-~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~   93 (242)
                      +.+++++++. +++||+|. ..+.+.+++|.++|++| +++||+||+|.+|...+.......  ..+.+++   |||.|+
T Consensus       209 ~~~~k~i~~~p~p~NPTG~-~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~  285 (431)
T PRK15481        209 AQGARAVILTPRAHNPTGC-SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ--TTQRWALIRSVSKALG  285 (431)
T ss_pred             hcCCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC--CCCCEEEEeeeccccC
Confidence            3467787887 68999995 55678899999999999 999999999988743221111111  1233333   999999


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      +| +|+||+++++++++.+.......+++.+.+++.++.++++...-    +...+.++++++.+.+.| +..+  +...
T Consensus       286 ~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L-~~~~--~~~~  361 (431)
T PRK15481        286 PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARAL-QQYG--IAIP  361 (431)
T ss_pred             CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH-HHcC--Cccc
Confidence            99 99999999998888876433333455778888887777763211    234566677777777777 5443  2222


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .+..|+++|++++..   ..++++.|.++||.+.|+.       .+++|+++... +++++++++++|+++++
T Consensus       362 ~p~gg~f~~~~l~~~---~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        362 SPGDGLNLWLPLDTD---SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTL-NDAEINRLAADLHQALN  430 (431)
T ss_pred             cCCCeEEEEEECCCC---HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCC-ChHHHHHHHHHHHHHhc
Confidence            456789999998753   5788899999999998851       35799996543 68999999999998875

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.89  E-value=1.1e-21  Score=167.04  Aligned_cols=219  Identities=16%  Similarity=0.243  Sum_probs=153.8

Q ss_pred             ccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccccc
Q psy6548           6 PVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHY   78 (242)
Q Consensus         6 ~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~   78 (242)
                      .+++.|+++  +.+.   +.++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  +++.+.+ ....
T Consensus       143 ~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~  217 (385)
T TIGR01825       143 IYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG-TVHH  217 (385)
T ss_pred             EeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCc-cHhh
Confidence            355666665  3333   247899999999999997776    89999999999999999999964  3333321 1222


Q ss_pred             CCCCCC----EEEeeccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Q psy6548          79 EDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENMIENAYKMG  151 (242)
Q Consensus        79 ~~~~~~----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~  151 (242)
                      +++.++    +.++||+++   .+.||+++++++++.+......+  +...++..++++.++++.+.. .+..+++++++
T Consensus       218 ~~~~~~~~i~~~s~sK~~~---~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  294 (385)
T TIGR01825       218 FGLEDKVDIQVGTLSKAIG---VVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNT  294 (385)
T ss_pred             cCCCcCCcEEEEeccHHhh---cCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            333333    345999997   34588888988888775432212  123456777777888876643 45678888899


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHHHHH
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQELR  224 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e~i~  224 (242)
                      +++++.| +.++-.+.   .+.+.++++.++.. .+..++++.|+++||.+.+       .+..++|+++++.+++++++
T Consensus       295 ~~l~~~L-~~~g~~~~---~~~~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~  369 (385)
T TIGR01825       295 RFFKAGL-GKLGYDTG---GSETPITPVVIGDE-KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLD  369 (385)
T ss_pred             HHHHHHH-HHcCCCCC---CCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHH
Confidence            9999999 66542211   12234555555443 3567899999999999853       23478999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINTM  237 (242)
Q Consensus       225 ~~~~~l~~~l~~~  237 (242)
                      +++++|+++++++
T Consensus       370 ~~~~~l~~~~~~~  382 (385)
T TIGR01825       370 QALDAYEKVGKEL  382 (385)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.89  E-value=4.7e-22  Score=169.12  Aligned_cols=206  Identities=13%  Similarity=0.187  Sum_probs=143.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCC---EEEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPD---IVILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~---~~~~sK~~~   93 (242)
                      ..+++++++++++|++| ...+.+.+++|+++|++||+++|+||+|.++...+. ....... +....   +.+|||.||
T Consensus       162 ~~~~~~v~i~~P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g  240 (383)
T TIGR03540       162 AKKAKLMFINYPNNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN  240 (383)
T ss_pred             cccceEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence            45788888888899999 456778899999999999999999999987643332 1111111 11122   334999997


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+.........+.+.+++.++.++++....  ++..+.++++++.+.+.| +..+  +....
T Consensus       241 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~--~~~~~  316 (383)
T TIGR03540       241 MTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEAL-KKIG--IDVEK  316 (383)
T ss_pred             Ccc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC--CEecC
Confidence             89 99999999999888776532222334455667666666653211  234566777788888888 5543  22223


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +..|+++|+.++.. .+..+++++|+ ++||.+.++      +.+++|+++  ..+++++++++++|++
T Consensus       317 ~~~~~~~~~~l~~~-~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       317 PKATFYVWVPVPEG-YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK  382 (383)
T ss_pred             CCcceEEEEECCCC-CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence            34578899998764 56788999876 679999875      257899995  4678888888888754

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08960 hypothetical protein; Provisional

Probab=99.89  E-value=1.2e-21  Score=166.89  Aligned_cols=210  Identities=13%  Similarity=0.137  Sum_probs=147.6

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-   93 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-   93 (242)
                      .+.+++++++..++|++|.++ +.+.+++|+++|++||+++|+||+|.++...+...  ......+++++   |||.++ 
T Consensus       162 ~~~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~  238 (387)
T PRK08960        162 WNADTVGALVASPANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGM  238 (387)
T ss_pred             hCccceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCC
Confidence            344566777777889999554 67889999999999999999999998764322211  11233445544   899998 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-H--hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-L--EENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      +| +|+||+++++++++.+.......+.+.+.+.+.++.++++.. .  -+...+.++++++.+.+.| +.++... ...
T Consensus       239 ~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~~~-~~~  315 (387)
T PRK08960        239 TG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPAL-RELGFGI-AVE  315 (387)
T ss_pred             cc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCcC-CcC
Confidence            89 999999999998887765444445566778877777666421 0  1234556677777788888 5544211 123


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +..|+++|++++....+..++++.|. ++||.+.|+       ..+++|+++.  .+.+++++++++|.+.+.
T Consensus       316 p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        316 PQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR  386 (387)
T ss_pred             CCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            45688999998752135678888876 579999875       2468999965  377889999998887664

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.89  E-value=1.8e-21  Score=166.81  Aligned_cols=224  Identities=14%  Similarity=0.163  Sum_probs=144.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~-   87 (242)
                      |+++ +.+.+.+++.+++..++|++|. +.+.+.+++|+++|++|+++||+||+|.++...+... ....+.....+++ 
T Consensus       159 d~~~l~~~~~~~~~~~~~~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~  237 (409)
T PLN00143        159 DLDAVEAIADENTIAMVIINPGNPCGS-VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITL  237 (409)
T ss_pred             CHHHHHHhcccCCEEEEEECCCCCCCC-ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEE
Confidence            3455 4333455666666677999994 5577889999999999999999999998875443221 1111221223333 


Q ss_pred             --eecccc-CCccchheeEeC-h-hhh------hccCCCCCCCCCCCCHHHHHHHHHHHHHH-H--hccHHHHHHHHHHH
Q psy6548          88 --LGKALS-GGLYPISAVLAD-D-EVM------GTLVPGTHGSTYGGNPLACKLAMTALDVI-L--EENMIENAYKMGEI  153 (242)
Q Consensus        88 --~sK~~~-~g~~~~g~~~~~-~-~~~------~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-~--~~~~~~~~~~~~~~  153 (242)
                        |||.|+ +| +|+||++++ + .++      +.+........+ .+.+++.++.++++.. .  -++..+.+++.++.
T Consensus       238 ~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  315 (409)
T PLN00143        238 GSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAF  315 (409)
T ss_pred             ccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence              899987 89 999999983 3 332      222221111222 3667777766666521 1  12345666666777


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHHH-HHHHCCceeccC----CCCEEEEeccCcCCHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVCI-KMKDAGLVTKPI----SNNIIRLSPALNITEQELR  224 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~-~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~  224 (242)
                      +.+.| +.++.......+..|+++|++++..   . .+..+++. .+.++||.+.|+    ..+++|+++  ..++++++
T Consensus       316 ~~~~L-~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~  392 (409)
T PLN00143        316 CYDKL-KEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLE  392 (409)
T ss_pred             HHHHH-hcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHH
Confidence            77777 5553211122345689999998741   0 13455554 557889999986    357899995  46789999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy6548         225 EGLDIIINTINTMAAK  240 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~~  240 (242)
                      +++++|.+.+++..++
T Consensus       393 ~al~rl~~~l~~~~~~  408 (409)
T PLN00143        393 DGLGRLKSFCGRHAKK  408 (409)
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999876654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.89  E-value=1.3e-21  Score=164.92  Aligned_cols=215  Identities=16%  Similarity=0.233  Sum_probs=153.0

Q ss_pred             ccccCCCChhh--hcCCC---CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCccccc
Q psy6548           4 QFPVKSKQVPA--KLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~---~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~   76 (242)
                      +..++..|++.  +.+.+   .++++++++++++++|...+    +++|.++|++||+++|+||+|..+  +..+.. ..
T Consensus       124 ~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~  198 (360)
T TIGR00858       124 VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRG-TL  198 (360)
T ss_pred             eEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCc-hH
Confidence            44567777777  44433   36899999999999996665    899999999999999999999632  222111 12


Q ss_pred             ccCCCCC---C--EEEeeccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh-ccHHHHHH
Q psy6548          77 HYEDVRP---D--IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENMIENAY  148 (242)
Q Consensus        77 ~~~~~~~---~--~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~  148 (242)
                      ..+++.+   +  +.++||+|++   +.||+++++++++.+.+.....  +.+.++..++++.++++.++. +...++++
T Consensus       199 ~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  275 (360)
T TIGR00858       199 EHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLL  275 (360)
T ss_pred             HhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            2333322   2  3448999983   3488989888887765432222  223456666677778876654 35678899


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQ  221 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e  221 (242)
                      ++++++.+.| ++++...   .+..+.++|+.++.. .+..+++++|.++||++.+.       +++++|++++..++++
T Consensus       276 ~~~~~l~~~L-~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~  350 (360)
T TIGR00858       276 ALIARLRAGL-EALGFTL---MPSCTPIVPVIIGDN-ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG  350 (360)
T ss_pred             HHHHHHHHHH-HHcCCcc---CCCCCCEEEEEeCCH-HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence            9999999999 6664211   234567888888654 46788999999999999642       3468999999999999


Q ss_pred             HHHHHHHHHH
Q psy6548         222 ELREGLDIII  231 (242)
Q Consensus       222 ~i~~~~~~l~  231 (242)
                      ++++++++|+
T Consensus       351 ~i~~~l~~l~  360 (360)
T TIGR00858       351 DIDRLAEALK  360 (360)
T ss_pred             HHHHHHHhhC
Confidence            9999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02187 rooty/superroot1

Probab=99.89  E-value=1.1e-21  Score=170.05  Aligned_cols=224  Identities=16%  Similarity=0.134  Sum_probs=146.2

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~--   87 (242)
                      +++ +...+.+++++++..++|++| .+.+.+.+++|+++|++||++||+||+|.++...+..+ ....+.-...+++  
T Consensus       194 ~~~l~~~~~~~~~~v~i~nP~NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~  272 (462)
T PLN02187        194 LEGIEAIADENTVAMVVINPNNPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLA  272 (462)
T ss_pred             HHHHHHhcCCCcEEEEEeCCCCCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEe
Confidence            444 444455677788877889999 55678889999999999999999999998864433221 1111111112333  


Q ss_pred             -eecccc-CCccchheeEeC-hh-h---hhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVLAD-DE-V---MGTLVPGTHGSTY--GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFR  155 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~-~~-~---~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~  155 (242)
                       |||.|+ +| +|+||++++ ++ +   ++.+........+  +.+.+++.++.++++....   +...+.++++++.+.
T Consensus       273 SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~  351 (462)
T PLN02187        273 GISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVC  351 (462)
T ss_pred             cchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence             899988 89 999999974 32 2   2233322122222  3467788777777652111   234566777788888


Q ss_pred             HHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHH-HHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHH
Q psy6548         156 SELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVC-IKMKDAGLVTKPI----SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~  226 (242)
                      +.| +.++.......+..|+++|+.++..   . .+..+++ +.+.++||.+.|+    ..+++|++  +..++++++++
T Consensus       352 ~~L-~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l~~a  428 (462)
T PLN02187        352 DRL-KDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHMLEDA  428 (462)
T ss_pred             HHH-hhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHHHHH
Confidence            888 5554221122344578888876531   0 1244454 4557889999986    35899999  45678999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy6548         227 LDIIINTINTMAAK  240 (242)
Q Consensus       227 ~~~l~~~l~~~~~~  240 (242)
                      +++|.+.+++..++
T Consensus       429 l~rL~~~l~~~~~~  442 (462)
T PLN02187        429 LERLKGFCTRHAKK  442 (462)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999877654

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.89  E-value=1.1e-21  Score=169.60  Aligned_cols=220  Identities=19%  Similarity=0.187  Sum_probs=162.8

Q ss_pred             hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccC---CCCCCEEEee
Q psy6548          15 KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYE---DVRPDIVILG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~---~~~~~~~~~s   89 (242)
                      +.+..++++++++.| .|||+|.++ +.+.-++|.++|++||++||.||.|..|...+.+. +...+   +...-+.+||
T Consensus       220 ~~~~~~~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFS  298 (459)
T COG1167         220 EALAQWKPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFS  298 (459)
T ss_pred             HHHhhcCCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeeh
Confidence            455567899999999 588888555 56789999999999999999999998875554322 11222   2222244599


Q ss_pred             ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          90 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE--ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~--~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      |.+.+| +|+||+++++++++.+.......+.+.+.+.+.+....+...  ..  ..++..++++++.+.+.|++.++..
T Consensus       299 K~l~Pg-lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~  377 (459)
T COG1167         299 KTLAPG-LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPEL  377 (459)
T ss_pred             hhcccc-cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999 999999999999999887767777788888876544434311  11  2244555556666666663333323


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-C--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-I--------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..+..+..|+++|++++.. .+..++.+.+.++|+.+.+ +        ..+++|++++.. +++++++++++|.+++.+
T Consensus       378 ~~~~~p~gG~flwl~l~~~-~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         378 ATWTRPEGGLFLWLELPEG-IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             eeeecCCceEEEEEEcCCC-CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence            3445566699999999998 7899999999999999987 3        245899998766 688999999999999887


Q ss_pred             Hh
Q psy6548         237 MA  238 (242)
Q Consensus       237 ~~  238 (242)
                      ..
T Consensus       456 ~~  457 (459)
T COG1167         456 AA  457 (459)
T ss_pred             Hh
Confidence            54

>PRK12414 putative aminotransferase; Provisional

Probab=99.89  E-value=8.4e-22  Score=167.60  Aligned_cols=211  Identities=17%  Similarity=0.174  Sum_probs=145.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccc-cCCCCCCEEE---ee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIH-YEDVRPDIVI---LG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~-~~~~~~~~~~---~s   89 (242)
                      +...+++++++++++++|++|.+ .+++.+++|+++|++||+++|+||+|.++...+... ... ..+...++++   ||
T Consensus       156 ~~~l~~~~~~v~i~~p~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfS  234 (384)
T PRK12414        156 AAAITPRTRMIIVNTPHNPSATV-FSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFG  234 (384)
T ss_pred             HhhcCcccEEEEEcCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccc
Confidence            33334578889999999999964 467889999999999999999999998764333211 111 1122223333   99


Q ss_pred             cccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          90 KALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        90 K~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      |.|+ +| +|+||+++++++++.+........++.+.+++.++.++++.... ....+.++++++.+.+.| +..+  +.
T Consensus       235 K~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~g--~~  310 (384)
T PRK12414        235 KSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLAREL-AGSR--FE  310 (384)
T ss_pred             ccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-HhCC--Ce
Confidence            9998 99 99999999999988877644444567777888777666542111 124566777888888888 5543  22


Q ss_pred             CeEeeeceeEEEEecCC-chhHHHHH-HHHHHCCceeccCC--------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKS-ILEVYDVC-IKMKDAGLVTKPIS--------NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~gi~~~~~~--------~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      ...+..++++|++++.. ..+..+++ +.|.++||.+.|+.        .+++|++..  .+++++++++++|.+
T Consensus       311 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        311 LLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             ecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            22344678888877641 02344555 55668899998851        468999954  578999999999864

>PRK07683 aminotransferase A; Validated

Probab=99.89  E-value=1.9e-21  Score=165.54  Aligned_cols=211  Identities=16%  Similarity=0.183  Sum_probs=145.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEE---Eeecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIV---ILGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~---~~sK~~~-   93 (242)
                      +.+++++++..++|++|. ..+.+.+++|+++|+++|+++|+||+|.++...+.......+ +...+++   +|||.++ 
T Consensus       159 ~~~~~~i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  237 (387)
T PRK07683        159 TEKTRCVVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSM  237 (387)
T ss_pred             CcCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccC
Confidence            456788889889999995 556788999999999999999999999876433222111111 2222333   3899999 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||+++++++++.+.........+.+.+++.++.+.++...  .+...+.++++++.+.+.| +..+  +....+
T Consensus       238 pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~~  313 (387)
T PRK07683        238 TG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRL-ISMG--LDVEKP  313 (387)
T ss_pred             cc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccCC
Confidence            99 9999999999988887653222223345667766665654221  1234556677777777877 5543  222334


Q ss_pred             eeceeEEEEecCCchhHHHHHHH-HHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIK-MKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..++++|+.++....+..++++. +.++||.+.|+      +++++|++..  .+++++++++++|.+.+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        314 TGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            56778888776521345667766 46789999885      3579999954  5899999999999998865

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.89  E-value=4.2e-22  Score=168.20  Aligned_cols=212  Identities=14%  Similarity=0.142  Sum_probs=149.5

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~--   87 (242)
                      +++ +...+++++++++++++|++|.+. +.+.+++|+++|++++ ++|+||+|.+|...+. ..........+.+++  
T Consensus       141 ~~~l~~~~~~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~  218 (366)
T PRK01533        141 LDEISSVVDNDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLR  218 (366)
T ss_pred             HHHHHHHhCcCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEe
Confidence            444 333345778888888999999655 6678999999998877 5778999987643221 111111122233333  


Q ss_pred             -eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          88 -LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                       |||.|+ +| +|+||+++++++++.+....  ..++.+.+++.++.++++...- +...+..++.++++.+.+ +.++ 
T Consensus       219 SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l-~~~g-  293 (366)
T PRK01533        219 TFSKAYGLAS-FRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFC-KENE-  293 (366)
T ss_pred             CchHHhcChH-HHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC-
Confidence             899999 99 99999999999998887632  4577888998888887753211 223444555566666666 4443 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                       + ...++.+.++|+.++.    ..++.++|.++||.+++. .+++|++   ..+.++++++++.|+++++..+++
T Consensus       294 -~-~~~~~~~nf~~~~~~~----~~~~~~~l~~~GI~Vr~~-~~~iRis---~~~~~~~~~l~~al~~~~~~~~~~  359 (366)
T PRK01533        294 -I-PFYQSQTNFIFLPVEN----GGEIYEACAHAGFIIRPF-PNGVRIT---VGTREQNEGVISVLQQHFENKKRK  359 (366)
T ss_pred             -C-ccCCCcCcEEEEeCCC----HHHHHHHHHHCCcEEccC-CCceEEe---CCCHHHHHHHHHHHHHHHHhcccc
Confidence             1 2224567889998753    467899999999999986 6789999   558899999999999988776554

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.89  E-value=1.1e-21  Score=167.60  Aligned_cols=206  Identities=14%  Similarity=0.064  Sum_probs=142.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccc-c---ccCCC--CCCEEE---
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLA-I---HYEDV--RPDIVI---   87 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~-~---~~~~~--~~~~~~---   87 (242)
                      .++++++++++++||+|. +.+++.+++|+++|++|+++||+||+|.++...+.  ... .   ...+.  ...+++   
T Consensus       164 ~~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  242 (396)
T PRK09147        164 WARTQLLFVCSPGNPTGA-VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHS  242 (396)
T ss_pred             hhccEEEEEcCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEec
Confidence            347888888899999995 55788999999999999999999999987643321  111 1   01111  123333   


Q ss_pred             eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      |||.++ +| +|+||+++++++++.+.......+++.+++.+.++.+++..-. -....+.++++++.+.+.| +..   
T Consensus       243 ~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~---  317 (396)
T PRK09147        243 LSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPIL-APV---  317 (396)
T ss_pred             cccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHh---
Confidence            999987 89 9999999999988877653333345667777777665553111 1223455666666677777 332   


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------------~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      .....+..|+++|++++.   +..++++.|. ++||.+.|+.            .+++|+++  ..+++++++++++|.+
T Consensus       318 ~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~--~~~~~~l~~~l~rl~~  392 (396)
T PRK09147        318 LDVQLPDAGFYLWAKVPG---DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIAL--VAPLAECVEAAERIVD  392 (396)
T ss_pred             cCCCCCCeeEEEEEECCC---CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence            122235578999999873   3567878876 6799997751            46899994  4578899999999988


Q ss_pred             HHH
Q psy6548         233 TIN  235 (242)
Q Consensus       233 ~l~  235 (242)
                      .++
T Consensus       393 ~~~  395 (396)
T PRK09147        393 FCR  395 (396)
T ss_pred             Hhc
Confidence            764

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-21  Score=166.37  Aligned_cols=213  Identities=14%  Similarity=0.178  Sum_probs=145.7

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccc-cCC---CCCCE
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIH-YED---VRPDI   85 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~-~~~---~~~~~   85 (242)
                      ++. +...+++++++++.+++|++| .+.+.+.+++|.++|++||+++|+||+|.++...+.. .... ..+   ....+
T Consensus       160 ~~~l~~~~~~~~k~i~l~~P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (394)
T PRK05942        160 LSSIPEEVAQQAKILYFNYPSNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEF  238 (394)
T ss_pred             HHHHHHhccccceEEEEcCCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEE
Confidence            444 333356889999998899999 4567788999999999999999999999876433321 1111 111   11123


Q ss_pred             EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhc
Q psy6548          86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      .+|||.|+ +| +|+||+++++++++.+........++.+.+++.++.++++..+.  +...+.++++++.+.+.| +.+
T Consensus       239 ~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~  316 (394)
T PRK05942        239 HTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL-GEL  316 (394)
T ss_pred             ecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence            34999997 89 99999999999998887644434456666777777777753222  335566777777788888 554


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +  +....+..++++|++++.. .+..++...+ .++||.+.++      +.+++|+++.  .+.+.+.+++++|.+
T Consensus       317 ~--~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~  388 (394)
T PRK05942        317 G--WNIPPTKATMYLWVPCPVG-MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQ  388 (394)
T ss_pred             C--CeecCCCeeeEEEEECCCC-CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            3  2222334667899998764 4556676655 4789999875      3579999964  456667777766654

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.88  E-value=2e-21  Score=165.71  Aligned_cols=211  Identities=16%  Similarity=0.195  Sum_probs=148.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEE---Eeecccc-C
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIV---ILGKALS-G   94 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~---~~sK~~~-~   94 (242)
                      +++++++++.++|++| .+.+.+.+++++++|++||+++|+||+|.++...+.. ....... ..+++   +|||.++ +
T Consensus       165 ~~~~~i~l~~P~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~  242 (391)
T PRK07309        165 DKLKAVILNYPANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQTILINGLSKSHAMT  242 (391)
T ss_pred             CCeEEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCCEEEEecChhhccCc
Confidence            4688999887899999 5556778999999999999999999999886443321 1111111 12222   3899998 8


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                      | +|+||+++++++++.+.........+.+.+++.++..+++....  ....+.++++++.+.+.| +..+  +....+.
T Consensus       243 G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~p~  318 (391)
T PRK07309        243 G-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKM-TDLG--FKIIKPD  318 (391)
T ss_pred             c-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-HHCC--CeecCCC
Confidence            9 99999999999988887533333345677777777666653211  234566777788888888 5543  2222344


Q ss_pred             eceeEEEEecCCc-hhHHHHHHHH-HHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         173 KGLLNAIVLDKSI-LEVYDVCIKM-KDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       173 ~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .|+++|+.++... .+..++++.+ .++||.+.|+      +++++|+++.  .+.+++++++++|++.+++++
T Consensus       319 gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~  390 (391)
T PRK07309        319 GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEHA  390 (391)
T ss_pred             eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence            5778888877531 2456788765 4689999876      2579999954  478899999999999887653

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.88  E-value=2.6e-21  Score=165.29  Aligned_cols=220  Identities=16%  Similarity=0.223  Sum_probs=152.8

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccCCCCCCEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYEDVRPDIV--   86 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~~~~~~~~--   86 (242)
                      ++. +...+.+++++++..++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+... . ....+..++++  
T Consensus       152 ~~~l~~~~~~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~  230 (397)
T PRK07568        152 KEEIEKLITPKTKAILISNPGNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIII  230 (397)
T ss_pred             HHHHHHhcCccceEEEEECCCCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEE
Confidence            344 3444567888888888999994 5566789999999999999999999998875444211 1 11112223444  


Q ss_pred             -Eeecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 -ILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 -~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                       +|||.++ +| +|+||++++ +++++.+..... ..++.+.+.+.++.++++..+  -+.+.+.++++++.+.+.| +.
T Consensus       231 ~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  307 (397)
T PRK07568        231 DSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEEL-NK  307 (397)
T ss_pred             ecchhhccCCC-cceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence             3899999 79 999999874 677766543222 235667777777766665321  1235566777888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH------CCceeccC---------CCCEEEEeccCcCCHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD------AGLVTKPI---------SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~  226 (242)
                      ++. +....+..|+++|++++..  +..+++++|.+      +||.+.|+         +++++|+++.  .++++++++
T Consensus       308 ~~~-~~~~~p~g~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~  382 (397)
T PRK07568        308 IPG-VVCEKPKGAFYIIAKLPVD--DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRA  382 (397)
T ss_pred             CCC-ceecCCCcceEEEEecCCC--CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHH
Confidence            532 2222334567889988763  56788888876      59999874         2368999954  578999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy6548         227 LDIIINTINTMAAK  240 (242)
Q Consensus       227 ~~~l~~~l~~~~~~  240 (242)
                      +++|++++++...+
T Consensus       383 ~~~l~~~l~~~~~~  396 (397)
T PRK07568        383 MEILKEALEKYNKR  396 (397)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999887654

>PRK09148 aminotransferase; Validated

Probab=99.88  E-value=2.7e-21  Score=165.53  Aligned_cols=213  Identities=15%  Similarity=0.177  Sum_probs=151.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC-E---EEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD-I---VILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~-~---~~~sK~~~   93 (242)
                      ..++++++++.++|++|. +.+.+.+++|.++|++||+++|+||+|.++...+... .........+ +   -+|||.++
T Consensus       163 ~~~~~~v~l~~P~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~  241 (405)
T PRK09148        163 IPKPIALIVNYPSNPTAY-VADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFS  241 (405)
T ss_pred             cccceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccC
Confidence            357888888888999995 5567889999999999999999999998764322211 1111111122 2   23899999


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+.......+++.+.+++.++.++++....  +...+.++++++.+.+.| +.++  .....
T Consensus       242 ~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~~~~~  317 (405)
T PRK09148        242 MAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESF-GRAG--WDIPP  317 (405)
T ss_pred             Ccc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHcC--CccCC
Confidence             99 99999999999998887543333455677777777666652111  234566777888888888 5543  22223


Q ss_pred             eeeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +..|+++|+.++...  .+..++.+.|. ++||.+.|+      +.+++|+++.  .+.+++++++++|.+.+++..
T Consensus       318 p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~  392 (405)
T PRK09148        318 PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD  392 (405)
T ss_pred             CCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence            456789999987531  23567888876 689999885      2578999954  688999999999999887653

>PRK08912 hypothetical protein; Provisional

Probab=99.88  E-value=1.5e-21  Score=166.24  Aligned_cols=215  Identities=17%  Similarity=0.221  Sum_probs=148.5

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCC-EEE--ee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPD-IVI--LG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~-~~~--~s   89 (242)
                      +...+++++++++..++|++|. ..+.+.+++|.++|++|++++|+||+|.++...+...  .....+.... +++  +|
T Consensus       153 ~~~~~~~~~~v~l~~p~NPtG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  231 (387)
T PRK08912        153 AAAFSPRTKAVLLNNPLNPAGK-VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAG  231 (387)
T ss_pred             HHHhCccceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeech
Confidence            3333457788888888999995 5566889999999999999999999998754333211  1111122222 232  89


Q ss_pred             cccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548          90 KALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDI  166 (242)
Q Consensus        90 K~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~  166 (242)
                      |.++ +| +|+||+++++++++.+........++.++..+.++.+++.....  ++..+.++++++.+.+.| +..+  .
T Consensus       232 K~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~  307 (387)
T PRK08912        232 KIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGL-RRIG--F  307 (387)
T ss_pred             hhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC--C
Confidence            9999 99 99999999999888876543333455666666655555531111  345677778888888888 5554  2


Q ss_pred             CCeEeeeceeEEEEecCC--chhHHHHHHHHH-HCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKS--ILEVYDVCIKMK-DAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ....+..++++|+.++..  ..+..++++.|. ++||.+.|+        ..+++|+++.  .+++++++++++|.+.++
T Consensus       308 ~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        308 PVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARR  385 (387)
T ss_pred             cccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            222334578889888751  135778888876 579999875        1478999954  578999999999988775


Q ss_pred             H
Q psy6548         236 T  236 (242)
Q Consensus       236 ~  236 (242)
                      +
T Consensus       386 ~  386 (387)
T PRK08912        386 R  386 (387)
T ss_pred             c
Confidence            3

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.88  E-value=2.8e-21  Score=163.61  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=147.7

Q ss_pred             cccccCCC-------Chhh--hcCCC------CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548           3 LQFPVKSK-------QVPA--KLKSN------PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL   67 (242)
Q Consensus         3 ~~~~~~~~-------d~~~--~~~~~------~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~   67 (242)
                      ++..+|++       |+++  +.+.+      .++++|+++.+++++|...+    +++|.++|++||+++|+||+|+. 
T Consensus       113 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~~-  187 (370)
T TIGR02539       113 NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYTV-  187 (370)
T ss_pred             EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECcccc-
Confidence            35567776       6777  33432      36789999999999997766    89999999999999999999973 


Q ss_pred             CccCcccccccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--------CCHHHHHHHHHHHHH
Q psy6548          68 GRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--------GNPLACKLAMTALDV  137 (242)
Q Consensus        68 ~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~a~a~l~~  137 (242)
                      +..+...  .  ....|+++  ++|++++| .|+||+++++++++.+......+.+.        ....++.++.++++.
T Consensus       188 g~~~~~~--~--~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  262 (370)
T TIGR02539       188 GRMPVSA--K--EIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH  262 (370)
T ss_pred             CCcCCCH--H--HcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH
Confidence            2212111  1  12356555  88999976 67999999999999887643322221        111244455555654


Q ss_pred             HHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCce-eccCCC
Q psy6548         138 ILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLV-TKPISN  207 (242)
Q Consensus       138 ~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~-~~~~~~  207 (242)
                      ..+  +...+ ..++.+++++.| ++++-......+..++++.++++..       ......+.++|.++||. ++++..
T Consensus       263 ~~~~l~~~~~-~~~~~~~l~~~L-~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~  340 (370)
T TIGR02539       263 VVERVKRWDE-EVKKTRWFVAEL-EDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQT  340 (370)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHH-HhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcc
Confidence            222  11222 233456788888 6665211111234567777776531       02345799999999997 777656


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++|++.+ .++++|++++++.|++++++
T Consensus       341 ~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       341 KYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             eEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence            79999974 57999999999999988765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK07777 aminotransferase; Validated

Probab=99.88  E-value=2.3e-21  Score=165.09  Aligned_cols=217  Identities=16%  Similarity=0.192  Sum_probs=148.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccC-CCCCC-E-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYE-DVRPD-I-   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~-~~~~~-~-   85 (242)
                      |++. +...++++++|++++++|++|... +.+.+++|+++|++|++++|+||+|.++...+.. .....+ +...+ + 
T Consensus       148 d~~~l~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~  226 (387)
T PRK07777        148 DLDALRAAVTPRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVT  226 (387)
T ss_pred             CHHHHHHhcCcccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEE
Confidence            3444 333345788999999999999655 6788999999999999999999999876433321 111111 11222 2 


Q ss_pred             -EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 -VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 -~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                       .+|||.|+ +| +|+||+++++++++.+.......++..+.+.+.++..+++..+.  +...+.++++++.+.+.| +.
T Consensus       227 ~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  304 (387)
T PRK07777        227 ISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGL-AE  304 (387)
T ss_pred             EeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence             23899999 89 99999999998888776543434555555566555555542111  234567778888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecC-CchhHHHHHHHHH-HCCceeccCC---------CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDK-SILEVYDVCIKMK-DAGLVTKPIS---------NNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~gi~~~~~~---------~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      ++  +....+..++++|+.++. ...+..++++.|. ++||.+.|+.         .+++|+++  ..+++++++++++|
T Consensus       305 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l  380 (387)
T PRK07777        305 AG--FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRL  380 (387)
T ss_pred             CC--CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence            53  222233457888888653 1135788999997 5799997751         35899995  45799999999999


Q ss_pred             HHHH
Q psy6548         231 INTI  234 (242)
Q Consensus       231 ~~~l  234 (242)
                      ++..
T Consensus       381 ~~~~  384 (387)
T PRK07777        381 RALR  384 (387)
T ss_pred             HHHh
Confidence            8754

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.88  E-value=3.6e-21  Score=165.05  Aligned_cols=207  Identities=14%  Similarity=0.104  Sum_probs=142.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEE---Eeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIV---ILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~---~~sK~~~   93 (242)
                      +++++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+. ....... +....++   +|||.++
T Consensus       174 ~~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~  252 (409)
T PRK07590        174 EEKVDIIYLCFPNNPTGT-VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAG  252 (409)
T ss_pred             ccCceEEEEeCCCCCcCC-cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccC
Confidence            467888888888999995 55788999999999999999999999987643332 1111111 1111233   3999998


Q ss_pred             -CCccchheeEeChhhhhccCC-----------CCCCCCC-CCCHHHHHHHHHHHHH-HH--hccHHHHHHHHHHHHHHH
Q psy6548          94 -GGLYPISAVLADDEVMGTLVP-----------GTHGSTY-GGNPLACKLAMTALDV-IL--EENMIENAYKMGEIFRSE  157 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~-----------~~~~~~~-~~~~~~~~~a~a~l~~-~~--~~~~~~~~~~~~~~l~~~  157 (242)
                       +| +|+||+++++++++.+..           ......+ +.+.+++.++.++++. ..  -++..+.++++++.+.+.
T Consensus       253 ~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~  331 (409)
T PRK07590        253 FTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREG  331 (409)
T ss_pred             CcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             99 999999999988863210           0111222 4566777776665542 11  123456677777888888


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      | +..+  +....+..++++|++++.. .+..++++.|. ++||.+.|+      +.+++|++  +..+++++++++++|
T Consensus       332 L-~~~~--~~~~~~~g~~f~wi~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl  405 (409)
T PRK07590        332 L-ESAG--FEVYGGVNAPYIWVKTPDG-MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERI  405 (409)
T ss_pred             H-HhcC--CceecCCcceEEEEECCCC-CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHH
Confidence            8 5543  2222234678999999865 45678888877 469999875      24689999  456899999999999


Q ss_pred             HHH
Q psy6548         231 INT  233 (242)
Q Consensus       231 ~~~  233 (242)
                      .++
T Consensus       406 ~~~  408 (409)
T PRK07590        406 KKA  408 (409)
T ss_pred             Hhh
Confidence            765

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-21  Score=165.41  Aligned_cols=201  Identities=16%  Similarity=0.193  Sum_probs=140.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g   95 (242)
                      ++++++++++++||+|.++ +.+.++++.++|  ++++||+||+|.+|......   ......+++++   |||.++ +|
T Consensus       167 ~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~~~~ivi~SfSK~~g~~G  240 (374)
T PRK02610        167 PPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQHPNWVILRTFSKAFRLAA  240 (374)
T ss_pred             CCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchH---HHHhcCCCEEEEEecchhccCcc
Confidence            6889999888999999655 667789998886  49999999999877422111   11111223333   999997 89


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG  174 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  174 (242)
                       +|+||+++++++++.+....  ..++.+.+++.++.++++.... .+......+.++.+.+.| +.++. + ...+..|
T Consensus       241 -lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~p~~g  314 (374)
T PRK02610        241 -HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQAL-QELPQ-L-RVWPSAA  314 (374)
T ss_pred             -cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-EeCCCcc
Confidence             99999999999988887643  3455677888877766653221 111122233355566666 44432 2 1235567


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +++|++++.. .+..++.+.|.++||.+.+. .+++|++.  . +++++++++++|++++.++
T Consensus       315 ~f~~~~l~~~-~~~~~~~~~l~~~gi~v~~~-~~~lRls~--~-~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        315 NFLYLRLSQD-AALAALHQALKAQGTLVRHT-GGGLRITI--G-TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             eEEEEeCCCC-CCHHHHHHHHHHCCEEEEeC-CCeEEEeC--C-CHHHHHHHHHHHHHHHhhc
Confidence            8999998765 46788999999999999875 67899993  3 5678999999999988764

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.8e-21  Score=165.93  Aligned_cols=219  Identities=15%  Similarity=0.151  Sum_probs=149.5

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEE--E
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV--I   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~--~   87 (242)
                      +++ +...+.+++++++++++|++|. ..+.+.+++|+++|++|++++|+||+|.++...+. ............++  +
T Consensus       156 ~~~l~~~i~~~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s  234 (391)
T PRK08361        156 PDELLELITKRTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANS  234 (391)
T ss_pred             HHHHHHhcccccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEec
Confidence            444 3334457888888888999995 55667899999999999999999999987633221 11111111112233  3


Q ss_pred             eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhc
Q psy6548          88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +||.++ +| +|+||+++++++++.+.......+++.+.+.+.++.++++....    +...+.++++++.+.+.| +.+
T Consensus       235 ~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~  312 (391)
T PRK08361        235 FSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRL-KEM  312 (391)
T ss_pred             CchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence            899999 89 99999999998888775432233455667777776666643111    234555666777777777 555


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +. +....+..|+++|++++....+..++++.|.+ +||.+.|+      +.+++|++..  .+++++++++++|++.++
T Consensus       313 ~~-~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~  389 (391)
T PRK08361        313 PH-IKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALE  389 (391)
T ss_pred             CC-CeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            32 22223345778898887522467788888874 79999875      2478999954  578899999999998876


Q ss_pred             H
Q psy6548         236 T  236 (242)
Q Consensus       236 ~  236 (242)
                      +
T Consensus       390 ~  390 (391)
T PRK08361        390 E  390 (391)
T ss_pred             c
Confidence            4

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.88  E-value=3.1e-21  Score=165.10  Aligned_cols=211  Identities=15%  Similarity=0.161  Sum_probs=146.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCC-E---EEeecccc-
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPD-I---VILGKALS-   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~-~---~~~sK~~~-   93 (242)
                      .++++++++.++||+| .+.+.+.+++|+++|++|+++||+||+|.++...+.. .......-..+ +   .+|||.++ 
T Consensus       174 ~~~~~i~~~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  252 (403)
T PRK08636        174 PKPKYVVVNFPHNPTT-ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM  252 (403)
T ss_pred             CCceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence            4688889988899999 5567788999999999999999999999876433321 11111111122 2   23899997 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||+++++++++.+........++.+.+++.++..+++....  +.+.+.++++++.+.+.| +..+  +....+
T Consensus       253 ~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~~~~~p  328 (403)
T PRK08636        253 AG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESF-ANAG--WELQKP  328 (403)
T ss_pred             cc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccCC
Confidence            89 99999999999988876543333345555666555544431111  234556666777777777 4442  222234


Q ss_pred             eeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..|+++|+.++...  .+..+++..+. ++||.+.|+      +++++|++..  .+++++++++++|++.++.+
T Consensus       329 ~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~  401 (403)
T PRK08636        329 RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL  401 (403)
T ss_pred             CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence            57899999987531  23577887755 689999886      2578999954  68999999999999988764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=4.1e-21  Score=160.66  Aligned_cols=200  Identities=18%  Similarity=0.150  Sum_probs=145.8

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CCcc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GGLY   97 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g~~   97 (242)
                      +..+++..++||+|.+ .+.+.++++++.|++++.++|+||+|.+|... .... ...+ .+++++   |||.|+ +| +
T Consensus       131 ~~~v~l~nPnNPTG~~-~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s~~-~~~~-~~~vi~l~SfSK~~gl~G-l  205 (339)
T PRK06959        131 LTHLIVVNPNNPTAER-LPAARLLRWHAQLAARGGTLIVDEAFADTLPA-ASLA-AHTD-RPGLVVLRSVGKFFGLAG-V  205 (339)
T ss_pred             CCEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-ccch-hccC-CCCEEEEecChhhcCCcc-h
Confidence            3466666668999955 56677999999999999999999999887422 1111 1111 233333   999999 99 9


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeecee
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL  176 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~  176 (242)
                      |+||+++++++++.+...  ...++.+.+++.++.++++... .+...+.+++.++++.+.| +.++-..    ...+++
T Consensus       206 RiGy~v~~~~li~~l~~~--~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~g~~~----~~~~~f  278 (339)
T PRK06959        206 RAGFVLAAPALLAALRDA--LGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALL-RAHGFAV----HATPLF  278 (339)
T ss_pred             heEEEecCHHHHHHHHHh--cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCCCCc----cCcceE
Confidence            999999999999988764  3356678888888887776322 1345677777888888888 6654211    124677


Q ss_pred             EEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +|++++    +..++.+.|.++||.++.. ..+++|++  ...+.++++++++.|+++++.+..
T Consensus       279 ~~~~~~----~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        279 SWTDDP----RAAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVPTLAA  336 (339)
T ss_pred             EEEeCC----CHHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHhh
Confidence            788764    3568999999999999865 35689999  435888999999999998887654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.88  E-value=7.1e-21  Score=161.11  Aligned_cols=213  Identities=21%  Similarity=0.307  Sum_probs=146.5

Q ss_pred             ccccCCCChhh--hcCCC-----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccc
Q psy6548           4 QFPVKSKQVPA--KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLL   74 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~-----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~   74 (242)
                      .+.|+|+|+++  +.+.+     +++.+|++++++|++|.+.|    +++|.++|++||+++++||+|+ | ++..+.+.
T Consensus       119 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~  194 (370)
T PRK05937        119 HQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF  194 (370)
T ss_pred             eEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence            45689999998  44431     35678889999999998888    9999999999999999999996 4 45554332


Q ss_pred             ccccCC---CCCCEEEeeccccC-CccchheeEeChhhhhccCC--CCCCCCCCCCHHHHHHHHHHHHHHHhc--cHHHH
Q psy6548          75 AIHYED---VRPDIVILGKALSG-GLYPISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEE--NMIEN  146 (242)
Q Consensus        75 ~~~~~~---~~~~~~~~sK~~~~-g~~~~g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~a~l~~~~~~--~~~~~  146 (242)
                      . ..++   ..+++.++||++|+ |    +.+++.++..+.+..  .....+.+.+++.++++.++++.++..  ...++
T Consensus       195 ~-~~~~~~~~~~~~~tlsK~~g~~G----~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~  269 (370)
T PRK05937        195 C-HSLGYENFYAVLVTYSKALGSMG----AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQ  269 (370)
T ss_pred             H-HhhCCCCCcEEEEechhhhhcCc----eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            1 1222   22456779999983 3    234555555444331  112233346777777777888887653  24566


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHH
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQEL  223 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i  223 (242)
                      ++++++++++.| .....         +....+.++.  ...+.+.+.|.++||.+...   ..+.+|++++..+|+||+
T Consensus       270 l~~l~~~l~~~l-~~~~~---------~~~~~i~~~~--~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edi  337 (370)
T PRK05937        270 LFRLKEYFAQKF-SSAAP---------GCVQPIFLPG--ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEV  337 (370)
T ss_pred             HHHHHHHHHHhc-CCCCC---------CCEEEEEeCC--hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHH
Confidence            666666666666 32111         1122344444  35678999999999988732   256899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         224 REGLDIIINTINTM  237 (242)
Q Consensus       224 ~~~~~~l~~~l~~~  237 (242)
                      +++++.|+++++++
T Consensus       338 d~l~~~L~~~~~~~  351 (370)
T PRK05937        338 DILVSVLATYLEKY  351 (370)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998775

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=2.7e-21  Score=163.59  Aligned_cols=212  Identities=18%  Similarity=0.198  Sum_probs=147.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV--   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~--   86 (242)
                      |++. +...++++++|++++++|++|.+.+ .+.+.++++.|+ +|+++|+||+|.++...+. .......+..++++  
T Consensus       143 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~  220 (367)
T PRK02731        143 DLDAMLAAVTPRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVT  220 (367)
T ss_pred             CHHHHHHHhCCCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEE
Confidence            4454 3333467889999999999996665 455666666554 5999999999976543321 11112222234444  


Q ss_pred             -Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          87 -ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        87 -~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       ++||.++ +| +|+||+++++++++.+....  .++..+.+++.++.++++... -++..+.++++++.+++.| +..+
T Consensus       221 ~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g  296 (367)
T PRK02731        221 RTFSKAYGLAG-LRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL-AELG  296 (367)
T ss_pred             eeehHhhcCcc-cceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence             3899998 89 99999999999888877532  345667788877776665221 1334566667777777877 5553


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      -  .. .++.|+++|+.++.. .+..+++++|.++||.+.++.    ++++|+++   ++.++++++++.|+++++
T Consensus       297 ~--~~-~~~~g~~~~i~~~~~-~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        297 L--EY-IPSVGNFILVDFDDG-KDAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLA  365 (367)
T ss_pred             C--cc-CCCCceEEEEECCCC-CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHh
Confidence            2  11 234578999998654 578899999999999998762    46899994   378999999999988764

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.88  E-value=3.3e-21  Score=162.47  Aligned_cols=202  Identities=13%  Similarity=0.129  Sum_probs=143.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc--CC-CCCCEE---Eeecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED-VRPDIV---ILGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~--~~-~~~~~~---~~sK~   91 (242)
                      .++++++++++++|++|. +.+.+.+++|.++|++||+++|+||+|.++...+.... +..  .+ ....++   +|||.
T Consensus       140 ~~~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  218 (357)
T TIGR03539       140 PVGPDLIWLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKR  218 (357)
T ss_pred             ccCccEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccc
Confidence            467899999999999995 55667899999999999999999999987654332211 110  01 111233   38999


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      ++ +| +|+||+++++++++.+........++.+.+++.++.++++... .+...+.++++++.+.+.| +..+  ....
T Consensus       219 ~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-~~~g--~~~~  294 (357)
T TIGR03539       219 SNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPAL-EKAG--FRID  294 (357)
T ss_pred             cCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHcC--CCCc
Confidence            96 88 9999999999988877654334456677788877776664311 1234566677777788888 5543  2222


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      .+..++++|+.++.   +..++.+.|.++||.+.|+      +.+++|+++  ..+++++++++++|
T Consensus       295 ~p~~~~~~~~~~~~---~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l  356 (357)
T TIGR03539       295 HSEAGLYLWATRGE---DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL  356 (357)
T ss_pred             CCCccEEEEEECCC---CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence            34457788887754   3567889999999999885      257999995  44789999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02656 tyrosine transaminase

Probab=99.88  E-value=5.1e-21  Score=164.05  Aligned_cols=222  Identities=16%  Similarity=0.139  Sum_probs=147.0

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~--   87 (242)
                      +++ +...+.+++++++..++|++|.+ .+++.+++|+++|++||++||+||+|.+|...+... .....+-...+++  
T Consensus       159 ~~~l~~~~~~~~~~v~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~  237 (409)
T PLN02656        159 LDAVEALADQNTVALVIINPGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLG  237 (409)
T ss_pred             HHHHHHHhccCceEEEEECCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEc
Confidence            444 33334566777777779999955 567889999999999999999999998875443221 1111111122333  


Q ss_pred             -eecccc-CCccchheeEeC--------hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVLAD--------DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF  154 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l  154 (242)
                       |||.|+ +| +|+||++++        +++++.+...... ..+.+.+++.++.++++....   +...+.++++++.+
T Consensus       238 SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~  315 (409)
T PLN02656        238 SLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDIC  315 (409)
T ss_pred             ccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence             999977 89 999999983        4677666542111 224567788777777752111   23455667777777


Q ss_pred             HHHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHH-HHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHH
Q psy6548         155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYD-VCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~  225 (242)
                      .+.| +.++.......+..|+++|++++...    .+..+ +.+.|.++||.+.|+    .++++|+++.  .+++++++
T Consensus       316 ~~~L-~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~e  392 (409)
T PLN02656        316 CDRI-KEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEE  392 (409)
T ss_pred             HHHH-hhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHH
Confidence            7878 55532111223456789999886310    12334 456777899999986    3578999955  58999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy6548         226 GLDIIINTINTMAA  239 (242)
Q Consensus       226 ~~~~l~~~l~~~~~  239 (242)
                      ++++|++.+.+...
T Consensus       393 al~rl~~~~~~~~~  406 (409)
T PLN02656        393 ALGRIKSFYLRHSK  406 (409)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998876544

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.88  E-value=4.5e-21  Score=162.07  Aligned_cols=202  Identities=14%  Similarity=0.163  Sum_probs=142.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc--CC-CCCCEE---Eeeccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED-VRPDIV---ILGKAL   92 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~--~~-~~~~~~---~~sK~~   92 (242)
                      ++++++++++++|++|.++ +.+.+++|+++|++||+++|+||+|.++...+.... ...  .+ ....++   +|||.+
T Consensus       147 ~~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  225 (364)
T PRK07865        147 QRPALIWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS  225 (364)
T ss_pred             ccceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence            6788999999999999555 567899999999999999999999987644332111 111  01 112223   289999


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      + +| +|+||+++++++++.+........++.+.+.+.++.++++..+ .+...+.++++++.+.+.| +..+  +....
T Consensus       226 ~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~  301 (364)
T PRK07865        226 NLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPAL-EAAG--FRVDH  301 (364)
T ss_pred             CCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccC
Confidence            7 88 9999999999988887654333445667777777666665311 1234566677777777888 5543  22222


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      +..++++|+.++.   +..++.+.|.++||.+.|+      +++++|+++.  .+++++++++++|+
T Consensus       302 ~~~~~~~~~~~~~---~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        302 SEAGLYLWATRGE---DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             CCccEEEEEeCCC---CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            3456788887643   3567889999999999874      3578999954  47899999999885

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.88  E-value=8e-21  Score=158.42  Aligned_cols=199  Identities=15%  Similarity=0.140  Sum_probs=139.8

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CCc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GGL   96 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g~   96 (242)
                      +++++++..++||+|.++ +.+.+++++++|+++|++||+||+|.++......   ......+++++   |||+++ +| 
T Consensus       124 ~~~~v~l~nP~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~---~~~~~~~~vi~~~SfSK~~gl~G-  198 (330)
T PRK05664        124 SLDVLVVVNPNNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSL---AACAHRPGLIVLRSFGKFFGLAG-  198 (330)
T ss_pred             CCCEEEEeCCcCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccc---cccccCCCEEEEeeccccccCCC-
Confidence            344555556679999655 6677999999999999999999999766322111   11111233333   999999 99 


Q ss_pred             cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeece
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGL  175 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~  175 (242)
                      +|+||+++++++++.+...  ..+++.+.+++.++.++++... .+...+.++++++.+.+.| +.++  . ....+.++
T Consensus       199 lRiG~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~-~~~~~~~~  272 (330)
T PRK05664        199 ARLGFVLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALL-RRHG--L-TPAGGCAL  272 (330)
T ss_pred             cceEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHCC--C-cccCCcce
Confidence            9999999999998888763  2345567777777777776432 1345677777788888888 5553  1 11123346


Q ss_pred             eEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ++|+..+    +..++.+.|.++||.+... ..+++|+++.  .+.++++++.+.|++..++
T Consensus       273 f~~~~~~----~~~~~~~~l~~~gi~v~~f~~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        273 FQWVRTE----DAAALHEFLARRGILTRLFEQPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             EEEEecC----CHHHHHHHHHHCCeEEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence            7777653    3578899999999999864 4579999944  3678889998888776554

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.88  E-value=2.6e-21  Score=163.37  Aligned_cols=198  Identities=15%  Similarity=0.191  Sum_probs=133.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCcc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~   97 (242)
                      ++++++++++.++|++|.+.+    .+++.++|+++|+++|+||+|.+|............+....+.+|||.++ +| +
T Consensus       156 ~~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-l  230 (361)
T PRK00950        156 TEKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAG-L  230 (361)
T ss_pred             ccCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCch-h
Confidence            457788888888999998776    66788889999999999999987641111001111111111234899998 89 9


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN  177 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  177 (242)
                      |+||+++++++++.+...  ...++.+++++.++.++++   ..++.+..++..+..++.+.+.+.  . ...+..++++
T Consensus       231 RiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~--~-~~~~~~~~~i  302 (361)
T PRK00950        231 RIGYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP--F-KVYPSEANFV  302 (361)
T ss_pred             hcchhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC--e-eECCCcceEE
Confidence            999999999988877653  3344567777777666664   223333333333333333322332  1 1123456788


Q ss_pred             EEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         178 AIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      |+.++.  .+..+++++|.++||.+.++      +++++|++++   +.++++++++.|++++
T Consensus       303 ~~~~~~--~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        303 LVDVTP--MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             EEECCC--CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            888843  47889999999999999864      2568999943   7889999999998875

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.88  E-value=7.5e-22  Score=166.65  Aligned_cols=212  Identities=18%  Similarity=0.244  Sum_probs=149.1

Q ss_pred             CCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccC
Q psy6548           9 SKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYE   79 (242)
Q Consensus         9 ~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~   79 (242)
                      +.|+++  +.+.+   +  ++.++++++++||+|. ..+.+.+++|+++|++||+++|+||+|.++......+ . ....
T Consensus       129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  207 (363)
T PF00155_consen  129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL  207 (363)
T ss_dssp             EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH
T ss_pred             cccccccccccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCcccccc
Confidence            456666  33333   2  5789999999999995 5567889999999999999999999998764332211 1 1111


Q ss_pred             CCCCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHH
Q psy6548          80 DVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-----EENMIENAYKM  150 (242)
Q Consensus        80 ~~~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-----~~~~~~~~~~~  150 (242)
                      ....++++   +||.++ .| +|+||+++++++++.+......+  ..+.+.+.++.+.+....     .+...+.++++
T Consensus       208 ~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  284 (363)
T PF00155_consen  208 DEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQRSG--LSSSPMQAAAAAALSDPELVEKWLEELRERLREN  284 (363)
T ss_dssp             TTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeeeeccccccccc-cccccccchhhhhhhhhhccccc--cccchhhHHHHHhhhcccccccccccchhhHHHH
Confidence            22333332   889998 88 99999999999988887633333  236555555555544332     13466777788


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEeccCcCCHHHHHH
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++.+++.| +..+  +....+..+++.|+.+...  +..++.++|.++ ||.+.|+    .++++|+++ ...++|++++
T Consensus       285 ~~~l~~~L-~~~~--~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~  358 (363)
T PF00155_consen  285 RDLLREAL-EEIG--ITVLPPEAGFFLWVRLDPN--DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEE  358 (363)
T ss_dssp             HHHHHHHH-HHTT--SEEEHHSBSSEEEEEESHH--HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHH
T ss_pred             HHHHHHHH-HHhh--hheeeccCccEEEEEcccc--hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHH
Confidence            88888888 5543  2223334678888877663  678999999998 9999874    367999997 6789999999


Q ss_pred             HHHHH
Q psy6548         226 GLDII  230 (242)
Q Consensus       226 ~~~~l  230 (242)
                      ++++|
T Consensus       359 ~~~~l  363 (363)
T PF00155_consen  359 ALERL  363 (363)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK07337 aminotransferase; Validated

Probab=99.88  E-value=6.9e-21  Score=162.24  Aligned_cols=212  Identities=16%  Similarity=0.171  Sum_probs=147.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~   91 (242)
                      +...+++++++++..++|++|. ..+.+.+++|+++|++|++++|+||+|.++...+....  ......+++   ++||.
T Consensus       157 ~~~~~~~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~  233 (388)
T PRK07337        157 EAAWGERTRGVLLASPSNPTGT-SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLGDDVITINSFSKY  233 (388)
T ss_pred             HhhcCccceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC--hhhccCCEEEEEechhh
Confidence            3333557788888888999994 55678899999999999999999999987754332111  112234443   38999


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      ++ +| +|+||+++++++++.+.........+.+.+++.++.++++..  . -.+..+.++++++.+.+.| +.++... 
T Consensus       234 ~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L-~~~~~~~-  310 (388)
T PRK07337        234 FNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL-ESLGFKV-  310 (388)
T ss_pred             cCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH-HhcCCcc-
Confidence            97 88 999999999988887765433334456777777766665421  1 1234566777778888888 5554211 


Q ss_pred             CeEeeeceeEEEEecCC----chhHHHHHHHH-HHCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKS----ILEVYDVCIKM-KDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l-~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ...+..|+++|++++..    ..+..++++++ .++||.+.|+       +.+++|+++.  .+++++++++++|.+.+
T Consensus       311 ~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        311 PVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF  387 (388)
T ss_pred             ccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence            12345689999998741    12567788775 4689999875       2479999955  47899999999998754

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=4.5e-21  Score=161.96  Aligned_cols=203  Identities=15%  Similarity=0.158  Sum_probs=146.3

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eeccc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKAL   92 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~   92 (242)
                      .+.+++++++++++++|++|.+. +.+.++++++.|+ +++++|+||+|.+|......  ....+..+++++   |||+|
T Consensus       147 ~~~~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~--~~~~~~~~~vi~~~SfSK~~  222 (364)
T PRK04781        147 AALASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPSA--VGLLARYDNLAVLRTLSKAH  222 (364)
T ss_pred             HHhccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcch--HHHHhhCCCEEEEecChhhc
Confidence            34466889999999999999655 5677888888875 47899999999887532211  111122344444   99999


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      + +| +|+||+++++++++.+...  ...++.+.+++.++.++++...   ..+..+.+++.++.+.+.| +.++. ...
T Consensus       223 gl~G-lRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~~  297 (364)
T PRK04781        223 ALAA-ARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAAL-AQLPG-VRR  297 (364)
T ss_pred             cccc-ceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-CCe
Confidence            9 99 9999999999999988864  3355677777777776665321   1223455677778888888 66642 222


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ..+..|+++|++++.    .+++.+.|.++||.+.++.     .+++|++   ..++++++++++.|+++.
T Consensus       298 ~~p~~g~f~~~~~~~----~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        298 VYPSQGNFLLVRFDD----AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             ECCCCCcEEEEEcCC----HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHHH
Confidence            235668999998863    4678899999999998762     5789999   347899999999998754

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.87  E-value=8.6e-21  Score=162.32  Aligned_cols=211  Identities=13%  Similarity=0.165  Sum_probs=144.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC--CEEE---eecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP--DIVI---LGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~---~sK~~~   93 (242)
                      +.++++++++.++|++|. ..+.+.+++|+++|++||+++|+||+|.+|...+.... ......+  .+++   |||.|+
T Consensus       166 ~~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~  243 (401)
T TIGR01264       166 DEKTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWL  243 (401)
T ss_pred             ccCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCC
Confidence            456788888888999995 55678899999999999999999999988754432111 1111122  2333   999987


Q ss_pred             -CCccchheeEeCh------hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          94 -GGLYPISAVLADD------EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        94 -~g~~~~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       +| +|+||+++++      ++++.+..... ..++.+++++.++.++++...+   +...+.++++++.+.+.| +.++
T Consensus       244 ~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L-~~~~  320 (401)
T TIGR01264       244 VPG-WRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGAL-AAVP  320 (401)
T ss_pred             Ccc-ceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence             89 9999999863      34444333211 2345567777777666653111   234566777777788888 5553


Q ss_pred             CCCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                       ++....+..|+++|+.++..    ..+..++++.|+ ++||.+.|+    ..+++|++.  ..+++++++++++|.+.+
T Consensus       321 -~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~rl~~~~  397 (401)
T TIGR01264       321 -GLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMMEEACSRIQEFC  397 (401)
T ss_pred             -CCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHHHHHHHHHHHH
Confidence             22223456789999997531    024577888876 789999875    368999995  457899999999999988


Q ss_pred             HHH
Q psy6548         235 NTM  237 (242)
Q Consensus       235 ~~~  237 (242)
                      +++
T Consensus       398 ~~~  400 (401)
T TIGR01264       398 ERH  400 (401)
T ss_pred             hcc
Confidence            653

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK03321 putative aminotransferase; Provisional

Probab=99.87  E-value=2.7e-21  Score=162.74  Aligned_cols=210  Identities=18%  Similarity=0.185  Sum_probs=143.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~~-   87 (242)
                      |++. +...+++++++++++++|++|.+++ .+.+.++++.| ++++++|+||+|.+|...+.. .........+++++ 
T Consensus       134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~-~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~  211 (352)
T PRK03321        134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVT-PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVL  211 (352)
T ss_pred             CHHHHHHhhccCCCEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEE
Confidence            3444 3333457888888899999997765 34444444433 369999999999876443321 11112222344443 


Q ss_pred             --eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          88 --LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        88 --~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                        |||.|+ +| +|+||+++++++++.+.+.  ...++.+.+++.++.++++.... .+..+...+.++.+.+.| +..+
T Consensus       212 ~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L-~~~~  287 (352)
T PRK03321        212 RTFSKAYGLAG-LRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL-RAAG  287 (352)
T ss_pred             ecchHHhhhHH-HhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence              899998 89 9999999999999988763  34567788888877777652221 122333444556666777 4443


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                        .. ..+..|+++|+.++.   +..++.+.|.++||.+.+.+.+++|++   ..+.+++++++++|+++++
T Consensus       288 --~~-~~~~~g~~i~i~l~~---~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        288 --WT-VPPSQANFVWLPLGE---RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             --Cc-cCCCCCCEEEEeCCC---CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence              21 123457889988754   467899999999999998777789999   3588999999999998765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.87  E-value=6.6e-21  Score=160.56  Aligned_cols=202  Identities=14%  Similarity=0.168  Sum_probs=142.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCCEE--Eeecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPDIV--ILGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~--~~sK~~~-   93 (242)
                      .++++++++..++|++|. ..+++.+++|+++|++|++++|+||+|.+|...+...  .....  ...++  +|||.++ 
T Consensus       140 ~~~~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~  216 (356)
T PRK08056        140 TPDLDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADN--PHLWVLRSLTKFYAI  216 (356)
T ss_pred             cCCCCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccC--CCEEEEEechhhccC
Confidence            467889999999999996 6678899999999999999999999998875433211  11111  11223  3899999 


Q ss_pred             CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||++++ +++++.+...  ...++.+.+++.++.++++... .....+.++++++.+.+.| +.++. . ...+
T Consensus       217 ~G-~RiG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~  290 (356)
T PRK08056        217 PG-LRLGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL-CALPL-L-TVWP  290 (356)
T ss_pred             cc-hhheeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-hcCCC-c-EEcC
Confidence            99 999999974 6676777642  2345566677666665553111 1234566677777788888 65532 1 1223


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +.++++|+.++.+   ..++++.|.++||.+.++      +.+++|++   ..++++.+++++.|+++++
T Consensus       291 ~~~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        291 GRANYLFLRCERP---DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVLT  354 (356)
T ss_pred             CCCcEEEEEcCCC---hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHHc
Confidence            4578888887643   467999999999999865      23689999   3478899999999987653

>PRK08175 aminotransferase; Validated

Probab=99.87  E-value=8.1e-21  Score=162.16  Aligned_cols=211  Identities=15%  Similarity=0.180  Sum_probs=149.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC--E--EEeecccc-
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD--I--VILGKALS-   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~--~--~~~sK~~~-   93 (242)
                      ++++++++++++|++| ...+.+.+++|+++|++||+++|+||+|.++...+... .........+  +  .+|||.|+ 
T Consensus       163 ~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  241 (395)
T PRK08175        163 PKPKMMILGFPSNPTA-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNM  241 (395)
T ss_pred             CCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccC
Confidence            4788999888899999 56677889999999999999999999998764333211 1111110112  2  23899997 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||+++++++++.+........++.+.+++.++.++++..+.  +.+.+.++++++.+.+.| +..+  +....+
T Consensus       242 pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~--~~~~~p  317 (395)
T PRK08175        242 AG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGL-HEAG--WMVEMP  317 (395)
T ss_pred             cc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccCC
Confidence            89 99999999999988877543333455566666666666642211  234566667778888888 5553  222334


Q ss_pred             eeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..|+++|++++...  .+..++++.|. ++||.+.|+      +++++|++.  ..+++.+++++++|.+.+.+.
T Consensus       318 ~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~~  390 (395)
T PRK08175        318 KASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRAD  390 (395)
T ss_pred             CEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHhc
Confidence            56899999998641  13678888776 679999886      246899995  458899999999999988753

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.87  E-value=9e-21  Score=162.24  Aligned_cols=206  Identities=13%  Similarity=0.069  Sum_probs=139.5

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEE---Eeecccc-
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIV---ILGKALS-   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~---~~sK~~~-   93 (242)
                      ++++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+. ....... +....++   +|||.|+ 
T Consensus       172 ~~~~~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~  250 (402)
T TIGR03542       172 PKIDIIYLCSPNNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGF  250 (402)
T ss_pred             CCceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCC
Confidence            57888888899999995 66778899999999999999999999988743332 1111111 1112233   3899998 


Q ss_pred             CCccchheeEeChhhh--------hccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhc
Q psy6548          94 GGLYPISAVLADDEVM--------GTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +| +|+||++++++++        ..+.........+.+.+++.++.++++..  . .....+.++++++.+.+.| +..
T Consensus       251 pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~  328 (402)
T TIGR03542       251 TG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKAL-EAA  328 (402)
T ss_pred             CC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            89 9999999998876        11111011112245667776665555421  1 1123455667777787888 554


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +  .....+..++++|+.++.. .+..++++.|. ++||.+.|+      +.+++|++  +..+++++++++++|+++
T Consensus       329 ~--~~~~~~~~~~f~~v~l~~~-~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       329 G--FKVYGGEHAPYLWVKTPEG-ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEA  401 (402)
T ss_pred             C--ceecCCCceeEEEEECCCC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence            3  2111223578999999874 46778888887 569999886      25789999  445889999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.87  E-value=5.9e-21  Score=164.12  Aligned_cols=216  Identities=17%  Similarity=0.140  Sum_probs=148.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---EeeccccCC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALSGG   95 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~~g   95 (242)
                      +.+++++++.+++||+|.+ .+.+.+++|+++|++||++||+||+|..+........... ....+++   +|||...+|
T Consensus       177 ~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pG  254 (416)
T PRK09440        177 DEDTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP-LWNPNIILCMSLSKLGLPG  254 (416)
T ss_pred             CCCceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc-cccCCeEEEecccccCCCc
Confidence            5578889999999999955 5678899999999999999999999964311110000000 1122333   399974489


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELRSRLSP-DIVPV  169 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  169 (242)
                       +|+||+++++++++.+........++.+.+.+.++.++++...-     +.+...++++++.+++.|.+.+.. .+...
T Consensus       255 -lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~  333 (416)
T PRK09440        255 -VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIH  333 (416)
T ss_pred             -ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEe
Confidence             99999999999988887644444456677888777766653211     113344556667777777333332 11112


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----C--------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----S--------NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+..|+++|++++....+..++.+.|.++||.+.|+     +        .+++|+++.  .+++++++++++|++++++
T Consensus       334 ~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        334 KPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             cCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            344589999998762145678999999999999875     1        248999944  5899999999999999887


Q ss_pred             Hhh
Q psy6548         237 MAA  239 (242)
Q Consensus       237 ~~~  239 (242)
                      ..+
T Consensus       412 ~~~  414 (416)
T PRK09440        412 AYA  414 (416)
T ss_pred             Hhh
Confidence            543

>PRK08363 alanine aminotransferase; Validated

Probab=99.87  E-value=9e-21  Score=162.05  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=143.7

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeeccc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKAL   92 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~   92 (242)
                      ...+.+++++++.+++|++|.+. +.+.+++|+++|++||+++|+||+|.++...+............+++   +|||.+
T Consensus       161 ~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  239 (398)
T PRK08363        161 KKITEKTKAIAVINPNNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVY  239 (398)
T ss_pred             hhCCcceEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhcc
Confidence            33345788888888899999544 67889999999999999999999998763333211111111122333   389997


Q ss_pred             c-CCccchheeEe--ChhhhhccCCCC---CCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          93 S-GGLYPISAVLA--DDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        93 ~-~g~~~~g~~~~--~~~~~~~l~~~~---~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      + +| +|+||+++  ++++++.+....   ....++.+.+++.++.+++....  -++..+.++++++.+.+.| +.++.
T Consensus       240 ~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~  317 (398)
T PRK08363        240 FATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRL-NEIPG  317 (398)
T ss_pred             CCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            6 89 99999987  665555443221   11235567777777766664211  1234566777888888888 55532


Q ss_pred             CCCCeEeeeceeEEEEecCCc-hhHHHH-HHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSI-LEVYDV-CIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                       +....+..++++|+.++... .+..++ .+.|.++||.+.|+      +++++|++.  ..+++++++++++|++.+++
T Consensus       318 -~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        318 -ISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             -CEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHH
Confidence             22223456778887776520 123444 45567899999875      247899995  46789999999999998876


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      .
T Consensus       395 ~  395 (398)
T PRK08363        395 R  395 (398)
T ss_pred             h
Confidence            3

>PRK05839 hypothetical protein; Provisional

Probab=99.87  E-value=9.4e-21  Score=160.60  Aligned_cols=200  Identities=13%  Similarity=0.082  Sum_probs=135.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc-----CCCCCCEEE---eec
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY-----EDVRPDIVI---LGK   90 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~-----~~~~~~~~~---~sK   90 (242)
                      .+++++++..++||+|. ..+++.+++|+++|++||++||+||+|.++...+.... ...     ....+++++   |||
T Consensus       154 ~~~k~v~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        154 QEVDLVILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             ccccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccc
Confidence            35888888899999995 45678899999999999999999999987642221111 110     001123333   999


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      .|+ +| +|+||+++++++++.+........++.+.+++.++.+++..-. -+.+.+.++++++.+.+    .++.  . 
T Consensus       233 ~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~l~~--~-  304 (374)
T PRK05839        233 RSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLARE----ILGI--T-  304 (374)
T ss_pred             ccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----hcCC--C-
Confidence            987 89 9999999999888877654333344556666766655543100 01223333444443333    2321  1 


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                       .+..|+++|++++.    ..+++++|.+ +||.+.|+        +.+++|++.  ..+++++++++++|++.++
T Consensus       305 -~p~gg~fi~~~~~~----~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        305 -IPPATFYVWLPVDN----DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             -CCCeeEEEEEeCCC----hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence             45568999998864    3578888875 99999885        147999995  4578999999999988764

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.87  E-value=1.7e-20  Score=161.52  Aligned_cols=225  Identities=16%  Similarity=0.172  Sum_probs=147.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~-   87 (242)
                      |+++ +.+.+.+++++++.+++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+..+ ....++-...+++ 
T Consensus       179 d~~~l~~~~~~~~~~i~i~~P~NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~  257 (430)
T PLN00145        179 DLEGVEALADENTVAMVIINPNNPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTL  257 (430)
T ss_pred             CHHHHHHHhCcCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEE
Confidence            3444 4444567788888888999995 5667889999999999999999999998764333211 1111121223333 


Q ss_pred             --eecccc-CCccchheeEe--Chhhhh------ccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHH
Q psy6548          88 --LGKALS-GGLYPISAVLA--DDEVMG------TLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEI  153 (242)
Q Consensus        88 --~sK~~~-~g~~~~g~~~~--~~~~~~------~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~  153 (242)
                        |||.++ +| +|+||+++  ++.+++      .+... .......+.+.+.++..+++...+   +...+.+++.++.
T Consensus       258 ~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  335 (430)
T PLN00145        258 GSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADI  335 (430)
T ss_pred             eccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence              899977 89 99999986  333322      22221 112223456777777666652111   2345666677777


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELR  224 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~  224 (242)
                      +.+.| +.++.......+..++++|++++..   . .+..+++.+|. ++||.+.|+    .++++|+++.  .+.++++
T Consensus       336 ~~~~L-~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~  412 (430)
T PLN00145        336 CYEKI-KEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLE  412 (430)
T ss_pred             HHHHH-hcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHH
Confidence            77777 5543211122356788999988642   0 24556776555 679999886    4689999954  5889999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy6548         225 EGLDIIINTINTMAAKK  241 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~~~  241 (242)
                      +++++|.+.+.+..+++
T Consensus       413 ~al~rl~~~~~~~~~~~  429 (430)
T PLN00145        413 DGLERLKSFCLRHAKLA  429 (430)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999998876654

>PRK07550 hypothetical protein; Provisional

Probab=99.87  E-value=7.3e-21  Score=161.99  Aligned_cols=217  Identities=14%  Similarity=0.138  Sum_probs=148.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-cc-ccccCCCCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LL-AIHYEDVRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~-~~~~~~~~~~~~-   86 (242)
                      |++. +...+.+++++++.+++|++|.++ +.+.+++|+++|++||+++|+||+|.+|...+. .. .....+...+++ 
T Consensus       152 ~~~~l~~~~~~~~~~v~~~~P~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~  230 (386)
T PRK07550        152 DPAAAEALITPRTRAIALVTPNNPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVH  230 (386)
T ss_pred             CHHHHHHHhcccCcEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEE
Confidence            3444 333345677777777789999655 678899999999999999999999987633221 11 111111122333 


Q ss_pred             --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                        +|||.++ +| +|+||+++++++++.+.......+.+.+.+++.++..+++.+..  +...+.++++++.+++.| +.
T Consensus       231 ~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  308 (386)
T PRK07550        231 LYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVF-AR  308 (386)
T ss_pred             EecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence              4899999 89 99999999998888777644444455667777766666653322  234566777888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .. .+ ...+..+++.|+.++..+.+..+++++|. ++||.+.|+      +.+++|+++.. .+++++++++++|.+.
T Consensus       309 ~~-~~-~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        309 LP-GW-ELLASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             CC-Cc-eeCCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            42 12 12234578889988762257888999875 579999885      25789999753 3688999999998764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.87  E-value=1.4e-20  Score=158.42  Aligned_cols=202  Identities=16%  Similarity=0.202  Sum_probs=143.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE---eecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI---LGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~---~sK~~~-   93 (242)
                      ..+++++++..++|++|. ..+.+.+++|+++|++||+++|+||+|.+|...+... ........+++++   |||.++ 
T Consensus       139 ~~~~~~v~~~~P~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl  217 (354)
T PRK06358        139 KEEIDLVFLCNPNNPTGQ-LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAI  217 (354)
T ss_pred             ccCCCEEEEeCCCCCCCC-ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccC
Confidence            345777777777999995 5577889999999999999999999998875433211 1112222234443   899999 


Q ss_pred             CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||++++ +.+++.+....  ..++.+.+++.++.++++.... +...+.+++.++.+.+.| +.++. . ...+
T Consensus       218 ~G-~RiG~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~  291 (354)
T PRK06358        218 PG-LRLGYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGL-SEFKG-I-KVYK  291 (354)
T ss_pred             cc-hhheeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hcCCC-c-EEcC
Confidence            99 999999874 67777776532  2466777888777777752211 234566677778888888 55532 1 1123


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.|.++|+.++..    .+++++|.++||.+.++      +++++|++   ..+.++++++++.|++.+
T Consensus       292 ~~g~f~~~~~~~~----~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        292 PSVNFIFFKLEKP----IDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             CcceEEEEEcCch----HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            3466888887652    68999999999999875      24689999   558899999999998764

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.87  E-value=1.5e-20  Score=160.51  Aligned_cols=213  Identities=17%  Similarity=0.222  Sum_probs=147.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-ccccc--CCCCCCEE---Eeeccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHY--EDVRPDIV---ILGKAL   92 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~--~~~~~~~~---~~sK~~   92 (242)
                      +++++++++.+++|++|.+ .+.+.+++|+++|++||+++|+||+|.++...+.. .....  .+....++   +|||.+
T Consensus       162 ~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  240 (393)
T PRK05764        162 TPKTKALILNSPSNPTGAV-YSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY  240 (393)
T ss_pred             CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence            4578888888889999854 55678999999999999999999999876433321 11111  12222222   389999


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      + +| +|+||+++++++++.+.......++..+++++.++.+.++....  +++.+.++++++.+++.| ++++. +...
T Consensus       241 ~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~g-~~~~  317 (393)
T PRK05764        241 AMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGL-NEIPG-LECP  317 (393)
T ss_pred             cCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-hhCCC-Cccc
Confidence            9 89 89999999999888876543334446677777777666651111  234566667777788888 55522 2222


Q ss_pred             EeeeceeEEEEecCCch----hHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSIL----EVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+..++++|+.++....    +..++.+.|. ++||.+.++.    .+++|++  +.++++++++++++|.++++++
T Consensus       318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        318 KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             CCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence            23446778887765311    2478888876 4799998752    4789999  5568999999999999988753

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.87  E-value=9.1e-21  Score=162.18  Aligned_cols=213  Identities=13%  Similarity=0.138  Sum_probs=150.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh-CCEEEEeccccccCccCccc-cc-cc-CCCCCCEEE---eecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLL-AI-HY-EDVRPDIVI---LGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~-~~-~~~~~~~~~---~sK~   91 (242)
                      +++++++++.+++|++| ...+.+.+++++++|++| ++++|+||+|.++...+..+ .+ .. .+....+++   |||.
T Consensus       164 ~~~~~~v~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  242 (402)
T PRK06107        164 TPRTRWLILNAPSNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKT  242 (402)
T ss_pred             CcCceEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchh
Confidence            45778888888899999 566778899999999998 99999999998764333211 11 11 112223444   7899


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      |+ +| +|+||+++++++++.+.......+++.+.+++.++..+++...  -+...+.++++++.+.+.| +.++. ...
T Consensus       243 ~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~g-~~~  319 (402)
T PRK06107        243 YAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALL-NAIPG-LSC  319 (402)
T ss_pred             hcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH-hcCCC-Ccc
Confidence            98 89 9999999999999888775444556778888888776664211  1234566777788888888 55532 222


Q ss_pred             eEeeeceeEEEEecC-------Cc---hhHHHHHHHH-HHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDK-------SI---LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~-------~~---~~~~~~~~~l-~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ..+..|+++|++++.       ..   .+..++...| .++||.+.|+    ..+++|++..  .++|++++++++|.+.
T Consensus       320 ~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~  397 (402)
T PRK06107        320 LVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERA  397 (402)
T ss_pred             cCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHH
Confidence            234568888988731       00   1345677665 4679999986    2578999954  6899999999999998


Q ss_pred             HHHH
Q psy6548         234 INTM  237 (242)
Q Consensus       234 l~~~  237 (242)
                      ++++
T Consensus       398 l~~~  401 (402)
T PRK06107        398 VAAL  401 (402)
T ss_pred             HHhc
Confidence            8765

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.87  E-value=2.5e-20  Score=159.97  Aligned_cols=213  Identities=15%  Similarity=0.178  Sum_probs=144.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCC-CCEEE--eecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVR-PDIVI--LGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~-~~~~~--~sK~~~-   93 (242)
                      +.+++++++.+++|++|. ..+.+.+++|+++|++||++||+||+|.+|...+... ....+... +.+++  |||.++ 
T Consensus       175 ~~~~~~i~~~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~  253 (412)
T PTZ00433        175 DDRTKALIMTNPSNPCGS-NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVV  253 (412)
T ss_pred             ccCceEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCC
Confidence            457888889889999995 5567889999999999999999999998864333211 11111111 22333  899996 


Q ss_pred             CCccchheeEe------ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          94 GGLYPISAVLA------DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI---LEENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        94 ~g~~~~g~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~---~~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      +| +|+||+++      .+++++.+.... ...++.+.+++.++.++++..   .-++..+.++++++.+.+.| +... 
T Consensus       254 pG-lRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~-  329 (412)
T PTZ00433        254 PG-WRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHI-GECI-  329 (412)
T ss_pred             CC-eeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence            89 99999986      235666554421 123466778887776666421   01234556666677777777 4332 


Q ss_pred             CCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .+....+..|+++|+.++..    ..+..++++.|. ++||.+.++    ..+++|+++.  ..++++++++++|.+.++
T Consensus       330 ~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~  407 (412)
T PTZ00433        330 GLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCE  407 (412)
T ss_pred             CCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            12223345688999988642    014678899988 479999886    2579999954  568899999999999887


Q ss_pred             HHh
Q psy6548         236 TMA  238 (242)
Q Consensus       236 ~~~  238 (242)
                      +.+
T Consensus       408 ~~~  410 (412)
T PTZ00433        408 RHK  410 (412)
T ss_pred             Hhc
Confidence            643

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.87  E-value=1.1e-20  Score=158.33  Aligned_cols=210  Identities=24%  Similarity=0.260  Sum_probs=154.8

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCC-CCCCEE--Eeec
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYED-VRPDIV--ILGK   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~-~~~~~~--~~sK   90 (242)
                      +...++++++++++++++++|.+ .+.+.+++|+++|++||+++|+|++|+++...+.... ....+ ...+++  +++|
T Consensus       126 ~~~~~~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K  204 (350)
T cd00609         126 EAAKTPKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSK  204 (350)
T ss_pred             HhhcCccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeeccc
Confidence            44557789999999999999964 5667899999999999999999999987654443211 01111 122343  3889


Q ss_pred             ccc-CCccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548          91 ALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LEENMIENAYKMGEIFRSELRSRLSPDI  166 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~  166 (242)
                      +++ +| .++|++++++ ++.+.+.......++..+..++.++..+++..  ..+...+.++++++++++.| +..+...
T Consensus       205 ~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~  282 (350)
T cd00609         205 TFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEAL-KELGPLV  282 (350)
T ss_pred             ccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCcc
Confidence            999 88 8999999998 78888776544445667777777777777765  22446677888888898988 6554322


Q ss_pred             CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      . ..+..+.+.++.++.. .....+.+.|.+.||.+.+.      ++.++|++++..  .+|+++++++|+
T Consensus       283 ~-~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         283 V-VKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             c-cCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            1 3445678888887764 35666777888889999876      568999998877  899999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=4.4e-21  Score=161.86  Aligned_cols=208  Identities=11%  Similarity=0.067  Sum_probs=141.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCC-E--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD-I--   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-~--   85 (242)
                      |++. +...+++++++++++++|++|.+.+ .+.+.++++.|+ +|+++|+||+|.+|...+. .......+..+. +  
T Consensus       140 d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~  217 (359)
T PRK03158        140 DLEAMLKAIDEQTKIVWICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVL  217 (359)
T ss_pred             CHHHHHHhcCCCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEE
Confidence            4454 3333557888888889999997665 455666666553 6999999999987633221 111111111122 2  


Q ss_pred             EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      .+|||.++ +| +|+||+++++++++.+....  .+++.+.+++.++.++++... .+...+.+++.++.+.+.| +..+
T Consensus       218 ~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~  293 (359)
T PRK03158        218 RTFSKAYGLAA-LRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFC-KEYG  293 (359)
T ss_pred             EechHhhcCcc-hhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence            24999999 89 99999999999988887632  346778888888887775221 1223444555666666666 4432


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                        + ...++.|+++|++++.   +..+++++|.++||.+.++    .++++|++   ..+++++++++++|+++
T Consensus       294 --~-~~~~~~g~~i~~~~~~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        294 --L-FYYPSQTNFIFVDTGR---DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL  358 (359)
T ss_pred             --C-eeCCCcCcEEEEECCC---CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence              1 1224457888888743   4678999999999999985    36789999   34889999999999875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.4e-20  Score=156.57  Aligned_cols=208  Identities=20%  Similarity=0.243  Sum_probs=158.1

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      +...+++|+++.+..+.|.+|.+.|    +++|+++|++||+++++|.+|+ .+ + .+.  +.-....|+++||  |++
T Consensus       156 ~~~i~~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~-h-~~i--dv~~l~~Df~afsgHKwl  226 (405)
T COG0520         156 EKLITPKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AG-H-LPI--DVQELGCDFLAFSGHKWL  226 (405)
T ss_pred             HHhcCCCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cC-c-cCC--CchhcCCCEEEEcccccc
Confidence            5567889999999999999998888    9999999999999999999996 21 1 122  2234467999887  989


Q ss_pred             cCCccchheeEeChhhhhccCCCCCCC------------CC----------CCCHHHHHHHHHHHHHHHh---ccHHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGTHGS------------TY----------GGNPLACKLAMTALDVILE---ENMIENA  147 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~~~~------------~~----------~~~~~~~~~a~a~l~~~~~---~~~~~~~  147 (242)
                      .|+ .++|.+.+++++.+.+.|...++            ++          +.+.....+..++++.++.   +++.++.
T Consensus       227 ~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e  305 (405)
T COG0520         227 LGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHE  305 (405)
T ss_pred             cCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence            887 78999999999999987642221            11          1223344444566776655   4578888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEe--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCC------------CEEEEe
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVR--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISN------------NIIRLS  213 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~------------~~lR~~  213 (242)
                      +++..++.+.| ++++......++  ..+.++.|.+...  .+.++++.|.++||.++.+..            ..+|+|
T Consensus       306 ~~L~~~~~~~L-~~~~~v~i~g~~~~~r~~~vsF~v~~~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S  382 (405)
T COG0520         306 RELTEYLLEGL-SELPGVEIYGPPDADRGGIVSFNVKGI--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRAS  382 (405)
T ss_pred             HHHHHHHHHHH-hcCCCeEEecCCcccCceEEEEEeCCC--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEE
Confidence            89999999999 777642222222  4577888888774  789999999999988876522            239999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHH
Q psy6548         214 PALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +++++|+||||++++.|++...
T Consensus       383 ~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         383 LHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             EeecCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.86  E-value=8.6e-21  Score=161.92  Aligned_cols=204  Identities=13%  Similarity=0.014  Sum_probs=140.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC--cccc----cccCC--CCCCEEE---
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG--KLLA----IHYED--VRPDIVI---   87 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~----~~~~~--~~~~~~~---   87 (242)
                      ..+++++++.+++|++|. +.+.+.+++|+++|++||++||+||+|.++...+  ....    ....+  ..+.+++   
T Consensus       163 ~~~~k~i~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  241 (393)
T TIGR03538       163 WRRCQLLFVCSPGNPTGA-VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS  241 (393)
T ss_pred             hhcceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence            347888888889999995 5577899999999999999999999998764332  1110    11111  1123333   


Q ss_pred             eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      |||.++ +| +|+||+++++++++.+.......+++.+++.+.++.+++..-+ -+...+.++++++.+.+.| +..   
T Consensus       242 ~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-~~~---  316 (393)
T TIGR03538       242 LSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEIL-GQV---  316 (393)
T ss_pred             chhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-Hhh---
Confidence            899887 89 9999999999888877653332344567777777665553211 1223455666666777777 332   


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------------~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      .....+..|+++|++++.   +..++++.|+ ++||.+.|+.            .+++|+++  ..+++++++++++|++
T Consensus       317 ~~~~~p~gg~f~~~~~~~---~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  391 (393)
T TIGR03538       317 LDLELPDAGFYLWPKVPG---DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRS  391 (393)
T ss_pred             CcccCCCeeEEEEEECCC---CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHH
Confidence            112235678999999872   3567888886 5799997652            46899994  4578999999999876


Q ss_pred             H
Q psy6548         233 T  233 (242)
Q Consensus       233 ~  233 (242)
                      .
T Consensus       392 ~  392 (393)
T TIGR03538       392 F  392 (393)
T ss_pred             h
Confidence            3

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.86  E-value=6.3e-20  Score=156.86  Aligned_cols=212  Identities=14%  Similarity=0.149  Sum_probs=149.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+++++++++..++|++|.+.+    +++|.++|++||+++++|++|+ ++..  .....  ....|+.++|
T Consensus       146 ~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~~~~--~~~~d~~~~s  216 (398)
T TIGR03392       146 DIRQLPELLTPRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQ--ALDIDFYAFS  216 (398)
T ss_pred             CHHHHHHHhccCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--CCChh--hcCCCEEEEe
Confidence            4455 4444567999999999999998876    8999999999999999999995 2211  11222  2346888877


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCCC---------------------CCCCHHHHHHHHHHHHHHHhc---cH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST---------------------YGGNPLACKLAMTALDVILEE---NM  143 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~a~a~l~~~~~~---~~  143 (242)
                        |.++ + .++|+++.++++++.+.+...+..                     .+.+..+..++.++++.+.+.   .+
T Consensus       217 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i  294 (398)
T TIGR03392       217 GHKLYG-P-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAA  294 (398)
T ss_pred             cccccC-C-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence              9766 3 458999999888877765321110                     123445666677778776543   35


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEEE
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNIIR  211 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lR  211 (242)
                      .++.+++++++++.| +.++. +.......+.++++.++.  .+.+++.+.|.++||.++++.            .+.+|
T Consensus       295 ~~~~~~l~~~l~~~l-~~l~g-~~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR  370 (398)
T TIGR03392       295 EAWSVSLADLAEERL-AQLPG-FRSFRCPGSSLLAFDFAG--VHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLR  370 (398)
T ss_pred             HHHHHHHHHHHHHHH-hcCCC-eEEeCCCCCcEEEEEeCC--cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEE
Confidence            567777788888888 55532 111111234566666654  356789999999999997642            46899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         212 LSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++++.++|++|++++++.|+++++.+
T Consensus       371 vS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       371 ASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             EEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.86  E-value=1.3e-20  Score=157.15  Aligned_cols=203  Identities=13%  Similarity=0.114  Sum_probs=140.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---   86 (242)
                      |++. +...+ ++++++++.++|++|. +++.+.+++|+++|++||+++|+||+|.++.....  .....+...+++   
T Consensus       115 d~~~l~~~~~-~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~i~~~  190 (330)
T TIGR01140       115 DLDRLPAALE-ELDVLVLCNPNNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS--LAPQAARFPGLVVLR  190 (330)
T ss_pred             CHHHHHhhcc-cCCEEEEeCCCCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc--hhhHhccCCCEEEEE
Confidence            6776 33332 4567777777899995 55778899999999999999999999987643311  111111122333   


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      ++||.++ +| +|+||+++++++++.+...  ...++.+++++.++.+.++... .+...++++++++.+++.| +.++.
T Consensus       191 S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~  266 (330)
T TIGR01140       191 SLTKFFGLAG-LRLGFVVAHPALLARLREA--LGPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALL-ARLGG  266 (330)
T ss_pred             ecchhhcCch-hhhhheeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            3899999 89 9999999999998888763  3345667777777666665221 1234567777777777877 55542


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                        ....++.+++.|+.++.    ..+++++|.++||.+.|+      +.+++|+++  ....++ ++++++|
T Consensus       267 --~~~~~~~~~f~~~~~~~----~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l  329 (330)
T TIGR01140       267 --LEVVGGTALFLLVRTPD----AAALHEALARRGILIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL  329 (330)
T ss_pred             --ceECCCCCeEEEEEcCC----HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence              12224467888887654    468999999999999875      246899994  333344 7777765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=1.9e-20  Score=159.05  Aligned_cols=201  Identities=9%  Similarity=0.075  Sum_probs=140.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~   91 (242)
                      +.+.+++++++++++++|++|.+.+    .+++.++++.. +++|+||+|.+|...+...  ......+++++   |||.
T Consensus       169 ~~~~~~~~~~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~  241 (380)
T PLN03026        169 EAVETHKPKLLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKR  241 (380)
T ss_pred             HHHhccCCcEEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHh
Confidence            3333678899999999999997665    34444455433 8999999998774332211  11111233333   9999


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      ++ +| +|+||+++++++++.+....  ..++.+.+++.++.++++... -++..+.+++.++++.+.| +.++.  ...
T Consensus       242 ~glaG-lRiGy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~--~~~  315 (380)
T PLN03026        242 AGLAG-LRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLL-KEVPF--LEP  315 (380)
T ss_pred             hcCcc-ccceeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH-HHCCC--CeE
Confidence            99 99 99999999999988876532  245677788888887775321 1334566777888888888 66542  122


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      .+..++++|+.++.. .+..++.++|.++||.++++    ..+++|+++   .++++++++++.|++
T Consensus       316 ~p~~~~f~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~---~~~~~~~~l~~al~~  378 (380)
T PLN03026        316 YPSDANFILCRVTSG-RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSV---GKPEHTDALMEALKQ  378 (380)
T ss_pred             CCCCCeEEEEECCCC-CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEec---CCHHHHHHHHHHHHH
Confidence            345678899988753 46788999999999999875    357899993   377889999988865

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.86  E-value=3.8e-20  Score=154.78  Aligned_cols=210  Identities=11%  Similarity=0.092  Sum_probs=143.8

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCCCC
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRP   83 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~~~   83 (242)
                      +.++|++. +.  ..++++|++++ .+++|++. +.+.+++|+++|++||+++++||+|..+  +..+.+.. ..++  +
T Consensus       123 ~~~~~l~~l~~--~~~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~-~~~~--~  195 (346)
T TIGR03576       123 FESDELSELKK--IDGTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPA-LDLG--A  195 (346)
T ss_pred             eccCCHHHHhh--CcCceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCH-HHcC--C
Confidence            34566665 32  24567888877 58888665 4677999999999999999999999642  21232211 1223  4


Q ss_pred             CEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          84 DIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        84 ~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      |+++  +||+++|  +++||+++++++++.+.+....+.++.++++++++.++|+....+...+.++++++.+++.+ +.
T Consensus       196 divv~s~SKalaG--~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l-~~  272 (346)
T TIGR03576       196 DLVVTSTDKLMDG--PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLF-DK  272 (346)
T ss_pred             cEEEeccchhccc--cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-Hh
Confidence            5544  8997643  78999999999999998765555566788888888888876544455677777777777777 44


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHH---HHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQ---ELREGLDIIINT  233 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e---~i~~~~~~l~~~  233 (242)
                      +.  + . +. .+.+++++++.. ...+...+.|.++||.+.|+.     ++++|++  +..+++   +++++++.|++.
T Consensus       273 ~~--~-~-~~-~~~f~~~~~~~~-~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~  344 (346)
T TIGR03576       273 LN--V-E-RT-PTGFVIKGVEEE-KLIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDS  344 (346)
T ss_pred             CC--C-C-cC-CCeEEEEeCCCC-CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhc
Confidence            32  1 1 12 233778877642 123455566667899999852     5799999  443443   699999999875


Q ss_pred             H
Q psy6548         234 I  234 (242)
Q Consensus       234 l  234 (242)
                      +
T Consensus       345 ~  345 (346)
T TIGR03576       345 L  345 (346)
T ss_pred             c
Confidence            4

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=1.1e-20  Score=158.83  Aligned_cols=195  Identities=17%  Similarity=0.193  Sum_probs=138.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g   95 (242)
                      .+++++++++++|++|. ..+.+.++++++.|++ ++++|+||+|.+|.....  ........+++++   |||++| +|
T Consensus       144 ~~~~lv~l~nPnNPTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s--~~~~~~~~~n~iv~rSfSK~~glaG  219 (351)
T PRK01688        144 DGVKVVYVCSPNNPTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS--LAGWLAEYPHLVILRTLSKAFALAG  219 (351)
T ss_pred             cCCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC--hHHHHhhCCCEEEEecchHhhcCHH
Confidence            47888999999999995 5566788999988876 688999999988742211  1111122345444   999999 89


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                       +|+||+++++++++.+.+.  ...|..+.+++.++.++++..  + -++..+.+++.++++.+.| +.++. +....++
T Consensus       220 -lRiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~~~~ps  294 (351)
T PRK01688        220 -LRCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAAL-KEIPC-VEQVFDS  294 (351)
T ss_pred             -HHHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-HhCCC-CCeECCC
Confidence             9999999999998888763  334566767776666666521  1 1233455666777888888 65532 1112345


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      .++++++.++    +.+++.++|.++||.++++     ..+++|+++   .++++++++++.|
T Consensus       295 ~~nfi~~~~~----~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~---~~~~e~~~l~~al  350 (351)
T PRK01688        295 ETNYILARFT----ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITI---GTREECQRVIDAL  350 (351)
T ss_pred             CCcEEEEEcC----CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC---CCHHHHHHHHHhh
Confidence            6788888775    2578999999999999854     257899993   3789999999887

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.85  E-value=7e-20  Score=156.80  Aligned_cols=219  Identities=15%  Similarity=0.176  Sum_probs=146.2

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~--   87 (242)
                      ++. +...+.+++++++..++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+..+ ....+.-..++++  
T Consensus       159 ~~~l~~~~~~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~  237 (403)
T TIGR01265       159 LDGLEALADEKTVAIVVINPSNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLG  237 (403)
T ss_pred             HHHHHHHhCcCccEEEEecCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEe
Confidence            444 3344557888888888999994 5566789999999999999999999998875444221 1111211223333  


Q ss_pred             -eecccc-CCccchheeEeCh--h-----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVLADD--E-----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFR  155 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~~--~-----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~  155 (242)
                       |||.|+ +| +|+||++++.  .     +++.+.... ..+++.+.+++.++.++++....   +...+.++++++.+.
T Consensus       238 S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  315 (403)
T TIGR01265       238 GISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCY  315 (403)
T ss_pred             ecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence             899977 88 9999998742  2     333333221 12345677788777766653111   234556667777777


Q ss_pred             HHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHH-HHCCceeccC----CCCEEEEeccCcCCHHHHHHH
Q psy6548         156 SELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~  226 (242)
                      +.| +.++ ......+..|+++|++++...    .+..++++.| .++||.+.|+    ..+++|+++.  .++++++++
T Consensus       316 ~~L-~~~~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~  391 (403)
T TIGR01265       316 EEL-KDIP-GLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEA  391 (403)
T ss_pred             HHH-hcCC-CceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHH
Confidence            777 5543 222223557899999986531    2467788886 4789999886    3679999954  578899999


Q ss_pred             HHHHHHHHHHH
Q psy6548         227 LDIIINTINTM  237 (242)
Q Consensus       227 ~~~l~~~l~~~  237 (242)
                      +++|.+.+++.
T Consensus       392 l~~l~~~~~~~  402 (403)
T TIGR01265       392 CSRIKEFCERH  402 (403)
T ss_pred             HHHHHHHHHhc
Confidence            99999888653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.85  E-value=5.7e-20  Score=161.82  Aligned_cols=218  Identities=16%  Similarity=0.156  Sum_probs=141.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC--EE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD--IV   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~--~~   86 (242)
                      |+++ +...+++++++++.+++|++|.+ .+++.+++|+++|++||++||+||+|.+|...+... ....  ..++  ++
T Consensus       270 d~~~l~~~~~~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi  346 (517)
T PRK13355        270 DIDDIRSKITSRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCV  346 (517)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEE
Confidence            4555 44445678888888889999955 467889999999999999999999998764333211 1111  1223  22


Q ss_pred             ---Eeecccc-CCccchheeEeC--hh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHH---HHHHHHHH
Q psy6548          87 ---ILGKALS-GGLYPISAVLAD--DE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI---ENAYKMGE  152 (242)
Q Consensus        87 ---~~sK~~~-~g~~~~g~~~~~--~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~---~~~~~~~~  152 (242)
                         +|||.++ +| +|+||++.+  ++    +++.+... ....++.+.+++.++.++++.... +++.   ....+.++
T Consensus       347 ~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~  424 (517)
T PRK13355        347 TFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRE  424 (517)
T ss_pred             EEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence               2899997 89 999999843  43    33333211 122245667788777777742110 1111   23344567


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---hhHHHH-HHHHHHCCceeccC------CCCEEEEeccCcCCHHH
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---LEVYDV-CIKMKDAGLVTKPI------SNNIIRLSPALNITEQE  222 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~  222 (242)
                      .+.+.| +.++ ++....+..++++|++++...   .+..++ .+.|.++||.+.|+      +++++|+++  ..++++
T Consensus       425 ~l~~~L-~~~~-g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~  500 (517)
T PRK13355        425 LVYNAL-NAIP-GISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLED  500 (517)
T ss_pred             HHHHHH-hcCC-CcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHH
Confidence            777777 5553 222333456777887776420   123344 45677889999875      367999994  578999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINTM  237 (242)
Q Consensus       223 i~~~~~~l~~~l~~~  237 (242)
                      +++++++|.+.+...
T Consensus       501 l~~a~~rl~~~~~~~  515 (517)
T PRK13355        501 LEDAMDRLADFFSYY  515 (517)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>KOG0257|consensus

Probab=99.85  E-value=3e-21  Score=157.82  Aligned_cols=209  Identities=15%  Similarity=0.235  Sum_probs=146.9

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---ccccccCCC---CCCEEEe
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHYEDV---RPDIVIL   88 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~---~~~~~~~   88 (242)
                      +...+.+|++|+++.++|++| -+.+++.|++|+++|++||+++|+||+|..+...+.   .++ ...|+   +..+-++
T Consensus       166 e~~~t~kTk~Ii~ntPhNPtG-kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a-slPgm~ertitvgS~  243 (420)
T KOG0257|consen  166 ESKITEKTKAIILNTPHNPTG-KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA-SLPGMYERTITVGSF  243 (420)
T ss_pred             HhhccCCccEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee-cCCchhheEEEeccc
Confidence            556677899999999999999 566889999999999999999999999976544443   112 11233   3334458


Q ss_pred             ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---h-------ccHHHHHHHHHHHHHHH
Q psy6548          89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---E-------ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~-------~~~~~~~~~~~~~l~~~  157 (242)
                      ||+|+ .| ||+||+++++.+.....+.....++..+...+.|..+++..-.   +       .++.+.++++++.+.+.
T Consensus       244 gKtf~~TG-WrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~  322 (420)
T KOG0257|consen  244 GKTFGVTG-WRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKA  322 (420)
T ss_pred             cceeeeee-eeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999 89 9999999998898888876666666666666666555544322   1       23678889999999999


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCc-----------hhHHHHHHHHHH-CCceeccC-----------CCCEEEEec
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSI-----------LEVYDVCIKMKD-AGLVTKPI-----------SNNIIRLSP  214 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-~gi~~~~~-----------~~~~lR~~~  214 (242)
                      | ..++  .....+..++++|.+++..+           -+.-.+.+.|.+ .|+.+-|.           ..+.+|++ 
T Consensus       323 L-~~lg--~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~-  398 (420)
T KOG0257|consen  323 L-EELG--LKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFC-  398 (420)
T ss_pred             H-HhcC--CccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHH-
Confidence            9 7775  33344566788999888211           012235666664 47776554           13456666 


Q ss_pred             cCcCCHHHHHHHHHHHH
Q psy6548         215 ALNITEQELREGLDIII  231 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~  231 (242)
                       ..-+.+.++.+.++|+
T Consensus       399 -~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  399 -FCKADETLRKAIERLK  414 (420)
T ss_pred             -HHhhHHHHHHHHHHHh
Confidence             5556666777777765

>PLN02721 threonine aldolase

Probab=99.85  E-value=4.8e-20  Score=155.08  Aligned_cols=210  Identities=15%  Similarity=0.193  Sum_probs=135.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-cccccccCCCCCC--EEEeeccccCCc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLAIHYEDVRPD--IVILGKALSGGL   96 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~--~~~~sK~~~~g~   96 (242)
                      ++++++++++++++.|+..++.+.+++|.++|++||+++|+||+|. ++... ............|  ++++||++++  
T Consensus       136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--  212 (353)
T PLN02721        136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA--  212 (353)
T ss_pred             CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC--
Confidence            4789999999876655577778889999999999999999999985 21110 0001111111234  3448899984  


Q ss_pred             cchhe-eEeChhhhhccCCCCCCCCCCCCHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          97 YPISA-VLADDEVMGTLVPGTHGSTYGGNPL--ACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        97 ~~~g~-~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                       ++|+ +++++++++.+...........+..  ..+++..+++....  ..++..++++++++.| +.++.......+..
T Consensus       213 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~  288 (353)
T PLN02721        213 -PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAKLLAEGL-NQIKGLRVNVAAVE  288 (353)
T ss_pred             -ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HhCCCcEEecCCcc
Confidence             3454 6678888776543211111111122  22223333332211  2233456677888888 66532101011233


Q ss_pred             ceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       174 ~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +.+++++++.. ..+.+.++++|.++||.+.+.+.+++|+++++.++++|+++++++|++++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        289 TNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             ceEEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            56788887642 1357889999999999999998899999999899999999999999987653

>PRK09265 aminotransferase AlaT; Validated

Probab=99.85  E-value=9.2e-20  Score=156.13  Aligned_cols=219  Identities=17%  Similarity=0.131  Sum_probs=143.9

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEEE--
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIVI--   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~~--   87 (242)
                      ++. +...+.++++++++.++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+.. .......-...+++  
T Consensus       158 ~~~l~~~~~~~~~~v~l~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~  236 (404)
T PRK09265        158 LDDIRSKITPRTKAIVIINPNNPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFN  236 (404)
T ss_pred             HHHHHHhccccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEe
Confidence            444 3333557888888888999995 456688999999999999999999999876433321 11111111112332  


Q ss_pred             -eecccc-CCccchheeEe--Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHH---HHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVLA--DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI---ENAYKMGEIFR  155 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~---~~~~~~~~~l~  155 (242)
                       |||.++ +| +|+||++.  +++    +++.+... ...+++.+.+++.++.++++..+. +.+.   +.++++++.+.
T Consensus       237 S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~  314 (404)
T PRK09265        237 GLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAW  314 (404)
T ss_pred             cchhhccCcc-cceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence             899996 89 99999985  333    33333211 122345677777777776642111 1121   34556677777


Q ss_pred             HHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHH
Q psy6548         156 SELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~  225 (242)
                      +.| +.++ .+....+..|+++|++++...    .+.+.+.+.|.++||.+.|+      +++++|++.  ..++|++++
T Consensus       315 ~~L-~~~~-~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~  390 (404)
T PRK09265        315 ELL-NAIP-GVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEE  390 (404)
T ss_pred             HHH-hcCC-CCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHH
Confidence            777 5553 222334556889999887531    23455778888999999875      257899995  468999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         226 GLDIIINTINTM  237 (242)
Q Consensus       226 ~~~~l~~~l~~~  237 (242)
                      ++++|++++++.
T Consensus       391 ~l~rl~~~l~~~  402 (404)
T PRK09265        391 AIGRIGRFLSGY  402 (404)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.85  E-value=5.8e-20  Score=160.49  Aligned_cols=213  Identities=14%  Similarity=0.109  Sum_probs=141.2

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-ccc-cc----ccCCC----CCCEEE---
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLL-AI----HYEDV----RPDIVI---   87 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~-~~----~~~~~----~~~~~~---   87 (242)
                      +++++++.+++|++|. +.+.+.+++|+++|++||++||+||+|.++...+ ..+ ++    ..+.-    ...+++   
T Consensus       218 ~~k~l~l~~P~NPTG~-~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S  296 (481)
T PTZ00377        218 TPRALVVINPGNPTGQ-VLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS  296 (481)
T ss_pred             CeeEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence            7888777788999995 5577889999999999999999999998764322 111 11    01110    112333   


Q ss_pred             eeccc-c-CCccchheeEe---ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-----------Hh-ccHHHHHHHH
Q psy6548          88 LGKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKM  150 (242)
Q Consensus        88 ~sK~~-~-~g~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-----------~~-~~~~~~~~~~  150 (242)
                      |||++ + +| +|+||+++   ++++++.+.... ...++.+.+++.++.++++..           +. ....+.++++
T Consensus       297 ~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  374 (481)
T PTZ00377        297 TSKGIIGECG-RRGGYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRR  374 (481)
T ss_pred             CCcccccCCc-CceEEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            89985 6 79 99999986   788888776633 234467778888877776421           00 1222345667


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-h----------hHHHH-HHHHHHCCceeccC-------CCCEEE
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-L----------EVYDV-CIKMKDAGLVTKPI-------SNNIIR  211 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~-~~~l~~~gi~~~~~-------~~~~lR  211 (242)
                      ++.+.+.| +.++ ++....+..|+++|+++.-.. .          +...+ .+.|.++||.+.|+       +.+++|
T Consensus       375 r~~l~~~L-~~~~-g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~R  452 (481)
T PTZ00377        375 AELLTDEL-NKIE-GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFR  452 (481)
T ss_pred             HHHHHHHH-hcCC-CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEE
Confidence            77777777 5553 222223445788887654210 0          12334 35556779999876       235899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         212 LSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +++.  .+++++++++++|++.+++..++
T Consensus       453 ls~~--~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        453 ITIL--PPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             EEEC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence            9954  67889999999999999876554

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.85  E-value=3.6e-20  Score=155.52  Aligned_cols=204  Identities=16%  Similarity=0.207  Sum_probs=143.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---   86 (242)
                      |++. +...++++++|+++.++|++|.+.+ .+.++++++.|+ +|+++|+||+|.++...+....  .....++++   
T Consensus       131 d~~~l~~~~~~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~--~~~~~~~~i~~~  206 (346)
T TIGR01141       131 DLEDILVAIDDKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLP--LLAEYPNLIVLR  206 (346)
T ss_pred             CHHHHHHhcCCCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHH--HHhhCCCEEEEe
Confidence            4555 4444667899999999999996665 455666666555 5999999999987643221111  111123433   


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      ++||+++ +| +|+||+++++++++.+.+.  ...++.+++++.++.++++... .+...++++++++.+++.| +.++ 
T Consensus       207 S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~-  281 (346)
T TIGR01141       207 TLSKAFGLAG-LRIGYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGL-KKLP-  281 (346)
T ss_pred             hhhHhhhchh-hhceeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhcC-
Confidence            3889996 78 8999999999998888763  2345667888877776665432 2345677778888888888 6553 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      ++. ..+..|.++|+.++.   +.+++.++|.++||.+.++.     .+++|++++   ++++++++++.|
T Consensus       282 g~~-~~~~~g~~~~~~~~~---~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l  345 (346)
T TIGR01141       282 GLE-VYPSDANFVLIRFPR---DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL  345 (346)
T ss_pred             CCE-ECCCcCCEEEEecCC---CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence            121 223457888888864   46889999999999998863     588999944   889999999876

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.85  E-value=1.7e-19  Score=157.46  Aligned_cols=210  Identities=16%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c---c-ccCC---CCCC-E---EE
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A---I-HYED---VRPD-I---VI   87 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~---~-~~~~---~~~~-~---~~   87 (242)
                      .+++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.++...+..+ +   . ...+   ..++ +   .+
T Consensus       198 ~~~k~l~l~nP~NPTG~-~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S  276 (496)
T PLN02376        198 KKVKGLILTNPSNPLGT-MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYS  276 (496)
T ss_pred             CCeeEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEe
Confidence            57898899999999995 5577889999999999999999999998754333211 1   1 1111   1223 2   23


Q ss_pred             eecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cc----HHHHHHHHHHHHHHHHHh
Q psy6548          88 LGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-EN----MIENAYKMGEIFRSELRS  160 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~----~~~~~~~~~~~l~~~l~~  160 (242)
                      |||.|+ +| +|+||++++ +.+.+.+...  ......+.+++.++.+.++...- +.    ..+.+++.++.+.+.| +
T Consensus       277 ~SK~~glpG-lRvG~li~~~~~l~~~~~~~--~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L-~  352 (496)
T PLN02376        277 LSKDMGLPG-FRVGIVYSFNDSVVSCARKM--SSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGI-K  352 (496)
T ss_pred             ccccCCCCc-ceEEEEEECCHHHHHHHHHH--hhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            899998 99 999999985 5555544332  11223566677666555542110 11    2344455556666666 4


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCc------hhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSI------LEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                      +.+  +....+..|+++|++++...      ....++.+.+.++ ||.+.|+      .++++|+++.. .+++++++++
T Consensus       353 ~~g--i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al  429 (496)
T PLN02376        353 KAD--IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVAL  429 (496)
T ss_pred             HCC--CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHH
Confidence            432  22223456799999986421      1235688888764 9999986      35799999543 4789999999


Q ss_pred             HHHHHHHHHH
Q psy6548         228 DIIINTINTM  237 (242)
Q Consensus       228 ~~l~~~l~~~  237 (242)
                      ++|++.+.+.
T Consensus       430 ~rl~~~l~~~  439 (496)
T PLN02376        430 GRIQDFVSKN  439 (496)
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.84  E-value=3.8e-19  Score=152.19  Aligned_cols=212  Identities=13%  Similarity=0.137  Sum_probs=148.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++++++.++|++|.+.+    +++|.++|++||+++++|++|+ ++..  +....  ....|+.++|
T Consensus       149 d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s  219 (401)
T PRK10874        149 DVDLLPELITPRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF--PADVQ--ALDIDFYAFS  219 (401)
T ss_pred             CHHHHHHhcCcCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc--cCCch--hcCCCEEEEe
Confidence            4555 4444678999999999999998876    8999999999999999999995 2212  11222  2346777755


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC------------------CC---CCCHHHHHHHHHHHHHHHhc---cH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------TY---GGNPLACKLAMTALDVILEE---NM  143 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~------------------~~---~~~~~~~~~a~a~l~~~~~~---~~  143 (242)
                        |.++ + .++|+++.++++++.+.+...++                  .|   +.+..++.+..++++.+.+.   ..
T Consensus       220 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~  297 (401)
T PRK10874        220 GHKLYG-P-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQA  297 (401)
T ss_pred             cccccC-C-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHH
Confidence              9766 3 35799999998888776432110                  01   23445666666777766543   34


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEEE
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNIIR  211 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lR  211 (242)
                      .++.+++++++++.| +.++. +.......+.++.+.++.  .+.+++.+.|.++||.++++.            .+.+|
T Consensus       298 ~~~~~~l~~~l~~~l-~~~~g-~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR  373 (401)
T PRK10874        298 ESWSRSLATLAEDAL-AKLPG-FRSFRCQDSSLLAFDFAG--VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLR  373 (401)
T ss_pred             HHHHHHHHHHHHHHH-hcCCC-EEEeCCCCCcEEEEEECC--cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEE
Confidence            667777788888888 55532 111111234566677654  356789999999999997642            47899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         212 LSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++++.++|++|++++++.|+++++.+
T Consensus       374 iS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        374 ASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             EEecccCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987754

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.84  E-value=3.7e-19  Score=152.51  Aligned_cols=211  Identities=16%  Similarity=0.131  Sum_probs=148.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+++++++++..++|++|.+.+    +++|.++|++||+++++|++|+ ++..  +..+.  ...+|++++|
T Consensus       153 d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~D~~~~s  223 (406)
T PRK09295        153 QLETLPALFDERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFS  223 (406)
T ss_pred             CHHHHHHhcCCCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCch--hcCCCEEEee
Confidence            4555 4444568999999999999998877    8999999999999999999995 3222  22222  2346777755


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC----------------------CCCCCHHHHHHHHHHHHHHHh---cc
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS----------------------TYGGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                        |.+| + .++|+++.++++++.+.+...++                      ..+.+..+..++.++++.+.+   +.
T Consensus       224 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~  301 (406)
T PRK09295        224 GHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNN  301 (406)
T ss_pred             hhhccC-C-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHH
Confidence              9665 3 45899999988877665421111                      113455677777788887765   34


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEE
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNII  210 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~l  210 (242)
                      +.++.+++.+++++.| ++++............++.+.++.  ...+++.+.|.++||.++.+.            ++.+
T Consensus       302 i~~~~~~l~~~l~~~l-~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~i  378 (406)
T PRK09295        302 IAEYEQNLMHYALSQL-ESVPDLTLYGPQNRLGVIAFNLGK--HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMC  378 (406)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCCEEEeCCCCCceEEEEEECC--cCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEE
Confidence            5677888888888888 655421111111224566677665  356778889999999997542            3579


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         211 RLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      |++++.++|++|++++++.|+++..
T Consensus       379 RiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        379 RASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             EEEccCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=5.2e-20  Score=155.20  Aligned_cols=194  Identities=15%  Similarity=0.224  Sum_probs=134.0

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE---EEeecccc-CCc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI---VILGKALS-GGL   96 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~---~~~sK~~~-~g~   96 (242)
                      +++++++++++|++|.+. +.+.+++++++|++ +++||+||+|.+|...+...  .......++   .+|||.++ +| 
T Consensus       154 ~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~~~SfSK~~~~~G-  228 (357)
T PRK14809        154 GERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAVLRTFSKAYGLAG-  228 (357)
T ss_pred             CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEEEecchhHhcCcc-
Confidence            577888889999999555 56678888888865 78999999998875433211  111111233   33999998 89 


Q ss_pred             cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeece
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGL  175 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~  175 (242)
                      +|+||+++++++++.+...  ..+++.+.+++.++.++++.-. -+...+.++++++.+.+.| ...      ..+..|+
T Consensus       229 lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~------~~~~~g~  299 (357)
T PRK14809        229 LRLGYAVVPEEWADAYARV--NTPFAASELACRAGLAALDDDEHVERTVETARWAREYIREEL-DAP------TWESAGN  299 (357)
T ss_pred             hhheeeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh-cCc------cCCCCCC
Confidence            9999999999998888763  3356677888777776664210 0122334444444444444 221      1135678


Q ss_pred             eEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++|+++++    ..++.+.|.++||.+.++.    ++++|+++   .+.+++++++++|+++++
T Consensus       300 f~~~~~~~----~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        300 FVLAEVGD----ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA  356 (357)
T ss_pred             EEEEECCC----HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence            88888743    4678899999999998863    47899993   367899999999988764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.84  E-value=1.5e-19  Score=156.98  Aligned_cols=211  Identities=15%  Similarity=0.136  Sum_probs=142.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccC------C--CCCCEE---
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYE------D--VRPDIV---   86 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~------~--~~~~~~---   86 (242)
                      .+++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.++...+..+ . ....      +  ....++   
T Consensus       190 ~~~k~v~l~nP~NPTG~-~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~  268 (468)
T PLN02450        190 LKVKGVLITNPSNPLGT-TTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY  268 (468)
T ss_pred             CCeeEEEEecCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence            47888888889999995 5567889999999999999999999998753333211 1 1111      1  112233   


Q ss_pred             Eeecccc-CCccchheeEeChh-hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHH
Q psy6548          87 ILGKALS-GGLYPISAVLADDE-VMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-----EENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-----~~~~~~~~~~~~~~l~~~l~  159 (242)
                      +|||.|+ +| +|+||++++++ +++.+...  ......+.+++.++.++++...     -++..+.+++.++.+.+.| 
T Consensus       269 S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~--~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L-  344 (468)
T PLN02450        269 SLSKDLGLPG-FRVGAIYSNDEMVVSAATKM--SSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGL-  344 (468)
T ss_pred             eccccCCCCC-ccEEEEEECCHHHHHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3999998 99 99999999754 45544432  1112356777777666665321     0223456666777777777 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                      +.++  +....+..|+++|++++...     ....++.+.|. ++||.+.|+      +++++|+++.. .+++++++++
T Consensus       345 ~~~g--i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l  421 (468)
T PLN02450        345 EAAG--IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAM  421 (468)
T ss_pred             HHcC--CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHH
Confidence            5553  22233456789999986420     12345666766 479999886      25799999443 3789999999


Q ss_pred             HHHHHHHHHHh
Q psy6548         228 DIIINTINTMA  238 (242)
Q Consensus       228 ~~l~~~l~~~~  238 (242)
                      ++|++++.+..
T Consensus       422 ~ri~~~l~~~~  432 (468)
T PLN02450        422 KRLKSFVESDS  432 (468)
T ss_pred             HHHHHHHHhcc
Confidence            99999987654

>PRK06855 aminotransferase; Validated

Probab=99.84  E-value=1.5e-19  Score=155.94  Aligned_cols=222  Identities=13%  Similarity=0.151  Sum_probs=142.6

Q ss_pred             Chhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCCCCE
Q psy6548          11 QVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVRPDI   85 (242)
Q Consensus        11 d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~~~~   85 (242)
                      |+++  +.+.. ++++++++..++||+|. +.+.+.+++|+++|++||++||+||+|.++...+... .. ....-...+
T Consensus       158 d~~~l~~~~~~~~~~~~i~l~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I  236 (433)
T PRK06855        158 DLDDLENKVKYNPSIAGILLINPDNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI  236 (433)
T ss_pred             CHHHHHHHHhcCCCceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeE
Confidence            4455  33432 46777777788999995 6677889999999999999999999998874433211 11 111111123


Q ss_pred             E--Eeecccc-CCccchheeEeC-----h---hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH----hccHHHHHHHH
Q psy6548          86 V--ILGKALS-GGLYPISAVLAD-----D---EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL----EENMIENAYKM  150 (242)
Q Consensus        86 ~--~~sK~~~-~g~~~~g~~~~~-----~---~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~----~~~~~~~~~~~  150 (242)
                      .  +|||.++ +| +|+||++++     +   .+++.+..... ...+.+.+++.++.++++...    -++..+.++++
T Consensus       237 ~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r  314 (433)
T PRK06855        237 ALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKR  314 (433)
T ss_pred             EEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence            3  3999997 99 999999872     2   23333322111 233456777777766664211    12344556666


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc--------------------------hhHHHHHHH-HHHCCceec
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI--------------------------LEVYDVCIK-MKDAGLVTK  203 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~-l~~~gi~~~  203 (242)
                      ++.+.+.| +.++ ......+..|+++|++++...                          .+..+++.. +.++||.+.
T Consensus       315 ~~~~~~~L-~~~~-~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~  392 (433)
T PRK06855        315 SNIAYEKL-KDVP-GLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVV  392 (433)
T ss_pred             HHHHHHHH-hcCC-CeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEe
Confidence            67777777 5442 222233456799999987530                          024456655 557899998


Q ss_pred             cC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         204 PI-----SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       204 ~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |+     ..+.+|+++.. .+.+++++++++|.+++++..
T Consensus       393 PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~~  431 (433)
T PRK06855        393 PLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEYL  431 (433)
T ss_pred             cCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHHh
Confidence            86     22469999654 388999999999999998643

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1e-19  Score=153.00  Aligned_cols=200  Identities=14%  Similarity=0.173  Sum_probs=138.2

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~   91 (242)
                      +.+.+++++++++++++|++|...+    .+++.++|++++.++|+||+|.+|.  +.... .......++++   |||.
T Consensus       142 ~~~~~~~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~  214 (351)
T PRK14807        142 KVIEKYQPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKA  214 (351)
T ss_pred             HHhhccCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEecchHh
Confidence            4444558899999999999997766    5666777778888999999997763  22111 11111123333   8999


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      ++ +| +|+||+++++++++.+.....  .++.+.+++.++.++++...-++..+.++++++.+.+.| +.+.. +. ..
T Consensus       215 ~~~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l-~~~~g-~~-~~  288 (351)
T PRK14807        215 FGLAG-LRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKEL-SKIPG-IK-VY  288 (351)
T ss_pred             cccch-hceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhCCC-cE-EC
Confidence            98 99 999999999999888875322  345677888777777653222334455667777777777 55432 21 22


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++.|.++|+.++.    ...+.+.|.++||.+.+.     ..+++|+++   .+.++.+++++.|++++
T Consensus       289 ~~~~~~~~i~~~~----~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        289 PSKTNFILVKFKD----ADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL  350 (351)
T ss_pred             cCCccEEEEEcCC----HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence            4457788888764    467899999999999764     247899993   36788899999987753

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.84  E-value=2.9e-19  Score=150.60  Aligned_cols=214  Identities=16%  Similarity=0.193  Sum_probs=148.8

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++  +.+.+++++++++.++++++|.+.+    +++|.++|++||+++++|++|. +|..  ......+  ..|+++
T Consensus       111 ~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~~d~~~  181 (356)
T cd06451         111 VSPEEIAEALEQHDIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--GVDVAY  181 (356)
T ss_pred             CCHHHHHHHHhccCCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--CccEEE
Confidence            35555  3444458899999999999997765    8899999999999999999985 3221  1222222  346665


Q ss_pred             --eeccccCCccchheeEeChhhhhccCC--CCCC-----------------CCCCCCHHHHHHHHHHHHHHHh---ccH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVP--GTHG-----------------STYGGNPLACKLAMTALDVILE---ENM  143 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~--~~~~-----------------~~~~~~~~~~~~a~a~l~~~~~---~~~  143 (242)
                        .+|+|+++ .++|+++.++++++.+..  ...+                 ...+.++..+.++.++++.+..   +.+
T Consensus       182 ~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~  260 (356)
T cd06451         182 TGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENR  260 (356)
T ss_pred             ecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHH
Confidence              56999977 678999999988877653  1111                 1112344556666677776654   345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEeccCc
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALN  217 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~  217 (242)
                      .++.+++++++++.| +.++-........ .+.+.++.++.. .+..++++.|.++ ||.+.++    .++.+|++++..
T Consensus       261 ~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~  338 (356)
T cd06451         261 WARHRRLAKALREGL-EALGLKLLAKPELRSPTVTAVLVPEG-VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGE  338 (356)
T ss_pred             HHHHHHHHHHHHHHH-HHcCCeeccCcccCCCceEEEECCCC-CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCC
Confidence            677788888999998 5554222111111 234445665543 4678999999998 9999764    346899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy6548         218 ITEQELREGLDIIINTIN  235 (242)
Q Consensus       218 ~t~e~i~~~~~~l~~~l~  235 (242)
                      +|+||++++++.|+++++
T Consensus       339 ~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         339 ATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999988763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.84  E-value=2.7e-19  Score=150.21  Aligned_cols=218  Identities=18%  Similarity=0.241  Sum_probs=148.4

Q ss_pred             cccCCCChhh--hcCCC----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccc-c
Q psy6548           5 FPVKSKQVPA--KLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLL-A   75 (242)
Q Consensus         5 ~~~~~~d~~~--~~~~~----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~-~   75 (242)
                      ..++..|.+.  +.+.+    .++++++++++++++|...+    +++|+++|++||+++|+||+|. | ++..+... .
T Consensus       110 ~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~  185 (349)
T cd06454         110 RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE  185 (349)
T ss_pred             EEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCChhh
Confidence            3455556665  33332    46789999999999996655    8999999999999999999995 3 21222111 0


Q ss_pred             cccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Q psy6548          76 IHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKM  150 (242)
Q Consensus        76 ~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~  150 (242)
                      ........++++  ++|++++   +.|+++.++++++.+.+....  .+.+.++..++++.++++.+.. +...++++++
T Consensus       186 ~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  262 (349)
T cd06454         186 FGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQEN  262 (349)
T ss_pred             hccccccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            111112345554  7899983   447888888887766543222  2224566777777888887654 4567888889


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHHH
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQEL  223 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i  223 (242)
                      ++.+++.| +.++....  ....+.+.++..+.. .+.+++.+.|.++||.+.+.       +.+.+|++++...+++++
T Consensus       263 ~~~l~~~l-~~~g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i  338 (349)
T cd06454         263 VRYLRRGL-KELGFPVG--GSPSHIIPPLIGDDP-AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDI  338 (349)
T ss_pred             HHHHHHHH-HhcCCccc--CCCCCcEEEEeCCCh-HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHH
Confidence            99999999 66542111  112233344444433 56788999999999999752       246899999998999999


Q ss_pred             HHHHHHHHHH
Q psy6548         224 REGLDIIINT  233 (242)
Q Consensus       224 ~~~~~~l~~~  233 (242)
                      ++++++|+++
T Consensus       339 ~~~~~~l~~~  348 (349)
T cd06454         339 DRLLEALKEV  348 (349)
T ss_pred             HHHHHHHHHh
Confidence            9999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK09105 putative aminotransferase; Provisional

Probab=99.84  E-value=1.5e-19  Score=152.92  Aligned_cols=198  Identities=12%  Similarity=0.083  Sum_probs=136.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-C
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-G   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~   94 (242)
                      ..+++++++.+++|++|.+ .+.+.++++++.| ++++++|+||+|.+|+...  ......+..+++++   |||.+| +
T Consensus       163 ~~~~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~~--s~~~~~~~~~~vi~~~SfSK~~g~~  238 (370)
T PRK09105        163 DPNAGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIHFSDAP--SVVDLVAQRKDLIVLRTFSKLYGMA  238 (370)
T ss_pred             CCCCCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHHhccCc--chHHHHhhCCCEEEEecccHhhcCC
Confidence            3467888888889999965 5667788888875 4599999999997664321  11111122345444   899998 8


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                      | +|+||+++++++++.+.+.   ..+..+.+++.++.++++... -++..+.++++++.+.+.| +.++..   ..++.
T Consensus       239 G-lRiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~g~~---~~~~~  310 (370)
T PRK09105        239 G-MRLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWL-KKKGYK---CTPSQ  310 (370)
T ss_pred             c-cceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHCCCC---cCCCC
Confidence            9 9999999999999888764   233456667666666665311 1334566777788888888 555421   12233


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.+++++++.   +..++++.|.++||.++..   .++++|++   ..++++++++++.|++.+
T Consensus       311 ~~f~~~~~~~---~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~  368 (370)
T PRK09105        311 ANCFMVDVKR---PAKAVADAMAKQGVFIGRSWPIWPNWVRVT---VGSEEEMAAFRSAFAKVM  368 (370)
T ss_pred             CcEEEEeCCC---CHHHHHHHHHHCCcEEecCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence            4455566642   4678999999999999422   36899999   337889999999988765

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=9.6e-20  Score=152.19  Aligned_cols=194  Identities=13%  Similarity=0.107  Sum_probs=134.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccch
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPI   99 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~~   99 (242)
                      +++++++..++||+|...+ .+.+++|   + +|+++||+||+|.+|................-+.+|||+++ +| +|+
T Consensus       138 ~~~~i~i~nP~NPTG~~~s-~~~l~~l---~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-lRv  211 (335)
T PRK14808        138 EGDVVFIPNPNNPTGHVFE-REEIERI---L-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAA-QRI  211 (335)
T ss_pred             CCCEEEEeCCCCCCCCCcC-HHHHHHH---H-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcc-cce
Confidence            4688999999999997664 4555555   4 58999999999988731111001111111111223899999 99 999


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA  178 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~  178 (242)
                      ||+++++++++.+....  ..++.+.+++.++.++++..+. .+..+.+++.++.+.+.| +.++  . ...++.|.++|
T Consensus       212 G~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~g--~-~~~~~~g~f~~  285 (335)
T PRK14808        212 GYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL-REMG--Y-RITDSRGNFVF  285 (335)
T ss_pred             EEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHCC--C-EECCCCCeEEE
Confidence            99999999998886533  3456677888777777763321 233455666677777777 5553  2 22234678889


Q ss_pred             EEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         179 IVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.++..  +..++.++|.++||.++.. .+++|++   ..+.++++++++.|++
T Consensus       286 ~~l~~~--~~~~~~~~l~~~Gi~V~~~-~~~~Ris---i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        286 IFMEKE--EKERLLEHLRAKNIAVRSF-REGVRIT---IGKREENDMILKELEV  333 (335)
T ss_pred             EeCCCc--cHHHHHHHHHHCCeEEEEC-CCCeEEe---cCCHHHHHHHHHHHHh
Confidence            988753  4578999999999999976 5789999   4578999999998864

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.2e-19  Score=157.82  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=136.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCCCCCCEE---Eee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~s   89 (242)
                      +.+.+++++++++.+++||+|. +.+++.+++|+++|++  ++++||+||+|.+|...... .....  ..+++   +||
T Consensus       235 ~~~~~~~tkai~l~nP~NPTG~-v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s-~~~~~--~~~~I~v~SfS  310 (527)
T PRK09275        235 EKLRDPSIKALFLVNPSNPPSV-AMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRS-LFAVL--PYNTILVYSFS  310 (527)
T ss_pred             HhhcCCCCCEEEEeCCcCCcCC-CCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccC-HHHhC--CCCEEEEeehh
Confidence            5566778999999899999995 5578899999999965  59999999999877421111 11111  11222   389


Q ss_pred             cccc-CCccchheeEeChh-----hhhcc--------------------------------CCCCCCCCCCCCHHHHHH-
Q psy6548          90 KALS-GGLYPISAVLADDE-----VMGTL--------------------------------VPGTHGSTYGGNPLACKL-  130 (242)
Q Consensus        90 K~~~-~g~~~~g~~~~~~~-----~~~~l--------------------------------~~~~~~~~~~~~~~~~~~-  130 (242)
                      |.|+ +| ||+||++++++     ++..+                                ++.....+.+.+.+.|.+ 
T Consensus       311 K~f~mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~  389 (527)
T PRK09275        311 KYFGATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQM  389 (527)
T ss_pred             hhccCcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence            9998 89 99999999876     44333                                111223344556566554 


Q ss_pred             H----HHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---------------hhHH
Q psy6548         131 A----MTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---------------LEVY  189 (242)
Q Consensus       131 a----~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~  189 (242)
                      +    .++++....  ++..+.++++++.+.+.|    +.......+..+++.++++....               .+..
T Consensus       390 al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L----g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~  465 (527)
T PRK09275        390 ALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL----GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV  465 (527)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc----CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence            2    122321110  122334444444443333    32222224566788888876410               1456


Q ss_pred             HHHHHHHH-CCceeccC-----CCCEEEEeccCc-CCHHHHHHHHHHHHHHHHHHhh
Q psy6548         190 DVCIKMKD-AGLVTKPI-----SNNIIRLSPALN-ITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       190 ~~~~~l~~-~gi~~~~~-----~~~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +++.+|.+ .||++.|+     .++++|++  +. .+++++.++.++|.+.+.+..+
T Consensus       466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             HHHHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888875 59999886     24789999  44 4788999999999999987643

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.84  E-value=2.7e-19  Score=152.95  Aligned_cols=215  Identities=17%  Similarity=0.146  Sum_probs=143.0

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      +..+|++     |+++ +...++++++|++++++ ++|.+.   +++++|+++|++||+++|+|++|.......   ...
T Consensus       136 ~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~---~~~  208 (398)
T cd00613         136 VVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLK---PPG  208 (398)
T ss_pred             EEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCC---ChH
Confidence            3445554     3455 44446689999999975 677663   468999999999999999999885221111   111


Q ss_pred             cCCCCCCEEE--eecccc----CCccchheeEeChhhhhccCCCC-----------------------------CCCCCC
Q psy6548          78 YEDVRPDIVI--LGKALS----GGLYPISAVLADDEVMGTLVPGT-----------------------------HGSTYG  122 (242)
Q Consensus        78 ~~~~~~~~~~--~sK~~~----~g~~~~g~~~~~~~~~~~l~~~~-----------------------------~~~~~~  122 (242)
                      .  ..+|+++  ++|+++    || +++|+++.++++++.+.+..                             ...+++
T Consensus       209 ~--~~~d~~~~s~~K~~~p~g~Gg-p~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~  285 (398)
T cd00613         209 E--YGADIVVGNLQKTGVPHGGGG-PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICT  285 (398)
T ss_pred             H--cCCCEEEeeccccCCCCCCCC-CceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccccee
Confidence            1  2467776  668873    46 88999999988877653210                             011233


Q ss_pred             CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHC
Q psy6548         123 GNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDA  198 (242)
Q Consensus       123 ~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~  198 (242)
                      .+++...++.++++.+..+   ++.++.+++++++++.| ++++..... .......+++.++.. +.+..+++++|.++
T Consensus       286 ~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~  363 (398)
T cd00613         286 GQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRL-KEVGGVLPF-NGPFFHEFVLRLPPLYGIRAEDLAKALIDG  363 (398)
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccC-CCCeeEEEEEEcCCcchHHHHHHHHhhhhc
Confidence            3445555555555555432   35688889999999999 666532111 111223345666541 14678899999999


Q ss_pred             CceeccC---CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         199 GLVTKPI---SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       199 gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      ||.+...   +.+.+|++|+.++|+||+|++++.|
T Consensus       364 gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         364 GFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             CccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            9988653   5689999999999999999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.84  E-value=3.8e-19  Score=153.50  Aligned_cols=211  Identities=17%  Similarity=0.172  Sum_probs=138.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc----ccCC---CCCCEE---Ee
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI----HYED---VRPDIV---IL   88 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~----~~~~---~~~~~~---~~   88 (242)
                      .+++++++.+++||+|. +.+++.+++|.++|++||+.+|+||+|.++...+..+ +.    ...+   ....+.   ++
T Consensus       199 ~~vk~lll~nP~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~  277 (447)
T PLN02607        199 IRVRGVLITNPSNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL  277 (447)
T ss_pred             CCeeEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence            57899999999999995 5567899999999999999999999998742222111 11    1111   112233   28


Q ss_pred             ecccc-CCccchheeEe-ChhhhhccCCCCCCCCC-CCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHh
Q psy6548          89 GKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVIL--E---ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~a~a~l~~~~--~---~~~~~~~~~~~~~l~~~l~~  160 (242)
                      ||.|| +| +|+||+++ +++++..+...   ..+ ..+.+++.++.+.++...  +   ....+++++.++.+.+.| +
T Consensus       278 SK~fg~~G-lRvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L-~  352 (447)
T PLN02607        278 SKDLGLPG-FRVGTIYSYNDKVVTTARRM---SSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGL-R  352 (447)
T ss_pred             hhcCCCCc-ceEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            99999 99 99999997 56666655532   122 345566655544443210  0   112344455555666666 4


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      ..+  +....+..|+++|++++..-     ....++.+++.+ .||.+.|+      .++++|+++.. .++++++++++
T Consensus       353 ~~g--i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~  429 (447)
T PLN02607        353 RAG--IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALK  429 (447)
T ss_pred             hCC--CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHH
Confidence            433  22233456899999986420     123467777765 69999886      26899999443 37899999999


Q ss_pred             HHHHHHHHHhh
Q psy6548         229 IIINTINTMAA  239 (242)
Q Consensus       229 ~l~~~l~~~~~  239 (242)
                      +|.+++++-.+
T Consensus       430 Ri~~~l~~~~~  440 (447)
T PLN02607        430 RIHRFMDRRKT  440 (447)
T ss_pred             HHHHHHHHHHh
Confidence            99999986543

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.83  E-value=9.2e-20  Score=156.07  Aligned_cols=203  Identities=14%  Similarity=0.162  Sum_probs=135.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC---cccccccC-CCCCCEE---Eeeccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG---KLLAIHYE-DVRPDIV---ILGKAL   92 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~~~~---~~sK~~   92 (242)
                      ++++++++.++|||+|. +.+++.+++|+++|++||++||+||+|.+|...+   .......+ ....+++   +|||.+
T Consensus       175 ~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~  253 (404)
T PTZ00376        175 NGSVVLLHACAHNPTGV-DPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM  253 (404)
T ss_pred             CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence            45678888999999994 5578899999999999999999999998874432   10011111 1112333   399999


Q ss_pred             c-CCccchhee---EeChhhhhccCCC---CCCCCC-CCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHH
Q psy6548          93 S-GGLYPISAV---LADDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRS  156 (242)
Q Consensus        93 ~-~g~~~~g~~---~~~~~~~~~l~~~---~~~~~~-~~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~~~~l~~  156 (242)
                      + +| +|+||+   .+++++++.+...   ....++ +.+++++.++.++++...        .++..+.++++++.+.+
T Consensus       254 ~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  332 (404)
T PTZ00376        254 GLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD  332 (404)
T ss_pred             cccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 99 999998   4677655443211   012233 345677777766665321        01234566778888888


Q ss_pred             HHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         157 ELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       157 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .| +..+..  +....+..|+++|+.++      .+++++|.++ ||.+.|++    |++.+. .+.+++++++++|+++
T Consensus       333 ~L-~~~~~~~~~~~~~p~gg~f~~~~~~------~~~~~~L~~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~l~~~  400 (404)
T PTZ00376        333 EL-KALGSPGDWEHIINQIGMFSFTGLT------KEQVERLIEKYHIYLLDNG----RISVAG-LTSKNVDYVAEAIHDV  400 (404)
T ss_pred             HH-HhcCCCCcccccccCceEEEecCCC------HHHHHHHHHhCCEeecCCC----eEEEec-cCHHhHHHHHHHHHHH
Confidence            88 554311  11123456788888653      3678888877 99998873    998533 6899999999999988


Q ss_pred             HHH
Q psy6548         234 INT  236 (242)
Q Consensus       234 l~~  236 (242)
                      +..
T Consensus       401 ~~~  403 (404)
T PTZ00376        401 VRN  403 (404)
T ss_pred             Hhc
Confidence            653

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.83  E-value=2.2e-19  Score=156.01  Aligned_cols=219  Identities=13%  Similarity=0.132  Sum_probs=133.5

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEE---Eee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~s   89 (242)
                      +.+.+++++++++.+++||+|. +.+++.+++|+++|++|  +++||+||+|..|...... .....  ..+++   +||
T Consensus       234 ~~~~~~~~kai~l~nP~NPTG~-vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s-l~~~~--~~~vI~v~SfS  309 (521)
T TIGR03801       234 EKLRDPSIKALFVVNPSNPPSV-AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRS-LFAEL--PYNTIGVYSFS  309 (521)
T ss_pred             HHhcCCCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccc-hhhhC--CCCEEEEEcch
Confidence            5556778999998888999995 55678899999999987  9999999999876431111 11111  11322   399


Q ss_pred             cccc-CCccchheeEeChh-----hhh--------ccCC------------------------CCCCCCCCCCHHHHH--
Q psy6548          90 KALS-GGLYPISAVLADDE-----VMG--------TLVP------------------------GTHGSTYGGNPLACK--  129 (242)
Q Consensus        90 K~~~-~g~~~~g~~~~~~~-----~~~--------~l~~------------------------~~~~~~~~~~~~~~~--  129 (242)
                      |.|+ +| ||+||++++++     ++.        .+..                        .....+.+.+.+.+.  
T Consensus       310 K~fg~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~  388 (521)
T TIGR03801       310 KYFGATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQM  388 (521)
T ss_pred             hhccCch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence            9998 89 99999998754     221        1111                        111223344444443  


Q ss_pred             HHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---------------hhHHHHHH
Q psy6548         130 LAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---------------LEVYDVCI  193 (242)
Q Consensus       130 ~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  193 (242)
                      +..++...+.. +.+.+..++..+.-++.+.+.++-......+..++++++++....               .+..+++.
T Consensus       389 al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~  468 (521)
T TIGR03801       389 ALFSLFALMDKENAYKAETKDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLF  468 (521)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence            21112222222 223333332222222333233332121223556789999887421               13567777


Q ss_pred             HHHH-CCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         194 KMKD-AGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       194 ~l~~-~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +|.+ .||++.|+     .++++|+++. ..++++++++.++|++.+++...
T Consensus       469 ~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       469 RLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             HHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            7775 59999886     2468999942 25888999999999999877643

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.83  E-value=5e-19  Score=151.08  Aligned_cols=214  Identities=16%  Similarity=0.173  Sum_probs=144.8

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh------hCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~------~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      +++ +...+++++++++.+++|++|.++ +.+.+++|+++|++      ||+++|+||+|.++...+.... .......+
T Consensus       158 ~~~l~~~~~~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~  235 (394)
T PRK06836        158 LDALEAAITPKTKAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDN  235 (394)
T ss_pred             HHHHHhhcCcCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCc
Confidence            444 333355788999988999999544 56789999999999      8999999999987643332111 00111123


Q ss_pred             EEE---eecccc-CCccchheeEeChhhhhc---cCCC---CC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          85 IVI---LGKALS-GGLYPISAVLADDEVMGT---LVPG---TH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        85 ~~~---~sK~~~-~g~~~~g~~~~~~~~~~~---l~~~---~~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                      +++   +||.|+ +| +|+||+++++++.+.   +...   .. ...+..+++.+.++...++   +....+.++++++.
T Consensus       236 ~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~  311 (394)
T PRK06836        236 SIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDL  311 (394)
T ss_pred             EEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHH
Confidence            333   899999 89 999999998765331   1110   01 1113455566655544443   22234566777788


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      +.+.| +..+  .....+..|+++|+.++..  +..++++.|.++||.+.|+.    .+++|+++.  .+++++++++++
T Consensus       312 l~~~L-~~~g--~~~~~~~gg~~~~~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~  384 (394)
T PRK06836        312 LYDGL-TELG--FECVKPQGAFYLFPKSPEE--DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPA  384 (394)
T ss_pred             HHHHH-HhCC--CEeecCCceEEEEEeCCCC--CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHH
Confidence            88888 5543  2222344578889887763  56788899999999999872    578999965  589999999999


Q ss_pred             HHHHHHHHh
Q psy6548         230 IINTINTMA  238 (242)
Q Consensus       230 l~~~l~~~~  238 (242)
                      |++++++.+
T Consensus       385 l~~~l~~~~  393 (394)
T PRK06836        385 FEKLAKEYK  393 (394)
T ss_pred             HHHHHHHhc
Confidence            999987653

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.83  E-value=7.8e-19  Score=147.74  Aligned_cols=212  Identities=16%  Similarity=0.212  Sum_probs=147.2

Q ss_pred             Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+. +.+++.+++..+++++|...+    +++|.++|++||+++|+|++|+ ++.  .++.+..++  .|+++
T Consensus       112 d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~--~~~~~~~~~--~d~~~  182 (355)
T TIGR03301       112 DLNRIEEALAADPDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGA--IPIDIEELD--VDALI  182 (355)
T ss_pred             CHHHHHHHHHhCCCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCC--cccchhhcC--ccEEE
Confidence            4555  3333 346677777777788887665    8999999999999999999876 332  223333333  45554


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHhc----cHH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTALDVILEE----NMI  144 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~a~a~l~~~~~~----~~~  144 (242)
                        ++|+++|+ .++|++++++++++.+.....                 ...++.+...+.++.++++.+.++    +..
T Consensus       183 ~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~  261 (355)
T TIGR03301       183 ASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARI  261 (355)
T ss_pred             ecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHH
Confidence              77999866 668999999998877652110                 123345666777777777766443    345


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCe-EeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC---CCEEEEeccCcCC
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPV-VRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNIT  219 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~t  219 (242)
                      ++++++++++++.| ++++...... ....+.++++.++... .+..++.++|.++||.+.++.   .+++|++++..++
T Consensus       262 ~~~~~~~~~~~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~  340 (355)
T TIGR03301       262 ARYRRNRELLVDGL-RALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEID  340 (355)
T ss_pred             HHHHHHHHHHHHHH-HHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCC
Confidence            67788889999999 6665221111 1234456777776521 355789999999999998863   3789999988889


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINT  233 (242)
Q Consensus       220 ~e~i~~~~~~l~~~  233 (242)
                      +++++++++.|+++
T Consensus       341 ~~~i~~~~~~l~~~  354 (355)
T TIGR03301       341 AADIERLLEAIKDA  354 (355)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=2.3e-19  Score=151.09  Aligned_cols=199  Identities=16%  Similarity=0.257  Sum_probs=136.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE-EE--eecccc-CCc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI-VI--LGKALS-GGL   96 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~-~~--~sK~~~-~g~   96 (242)
                      .++++++..++|++|.+.+ .+.+++|++.++  ++++|+||+|.+|+.... ..  .....+++ ++  |||.++ +| 
T Consensus       144 ~~~~v~~~~P~NPtG~~~~-~~~~~~l~~~~~--~~~livDe~y~~~~~~~~-~~--~~~~~~~~i~~~S~SK~~~~~G-  216 (353)
T PRK05387        144 PNGGIIFPNPNAPTGIALP-LAEIERILAANP--DSVVVIDEAYVDFGGESA-IP--LIDRYPNLLVVQTFSKSRSLAG-  216 (353)
T ss_pred             cCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC--CcEEEEeCcccccCCcch-HH--HHhhCCCEEEEEehhHhhcchh-
Confidence            3466777778999997665 455666655432  999999999987642211 11  11112222 22  899999 89 


Q ss_pred             cchheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548          97 YPISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG  174 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  174 (242)
                      +|+||+++++++++.+...... .+++.+.+++.++.++++... -++..++++++++.+.+.| +.++  +. ..+..+
T Consensus       217 lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~-~~~~~~  292 (353)
T PRK05387        217 LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEEL-EALG--FE-VLPSKA  292 (353)
T ss_pred             hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC--Ce-ECCCcC
Confidence            9999999999988887654322 245667788877776665221 1345666777888888888 6554  21 123456


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +++|+.++.  .+..++.++|.++||.+.+.    ..+++|++++   ++++++++++.|+++++
T Consensus       293 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        293 NFVFARHPS--HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             cEEEEECCC--CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            788888764  46788999999999999654    2468999943   77999999999988764

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=1.6e-19  Score=152.22  Aligned_cols=198  Identities=15%  Similarity=0.167  Sum_probs=138.3

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~   91 (242)
                      +.+.+++++++++.+++|++|.+. +.+.+++++++|   ++++|+||+|.+|...........   ..++++   ||| 
T Consensus       147 ~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~---~~~vi~~~S~SK-  218 (356)
T PRK04870        147 AAIAEHRPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLAR---FPNLLVMRTVSK-  218 (356)
T ss_pred             HHhhcCCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhh---CCCEEEEecchh-
Confidence            444456889999888899999655 567788888877   789999999987743211001111   123333   899 


Q ss_pred             cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      ++ +| +|+||+++++++++.+....  ..++.+.+++.++..+++.... ++..+.++++++.+.+.| +.++. + ..
T Consensus       219 ~~~~G-lRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~-~-~~  292 (356)
T PRK04870        219 LGLAG-LRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAAL-AALPG-V-TV  292 (356)
T ss_pred             hhhHH-HhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-EE
Confidence            77 78 99999999999888877533  3345677777776666653221 334566777888888888 66532 2 22


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .+..+.++|+.++.    ..++.+.|.++||.++++      .++++|+++   .+.++++++++.|+++
T Consensus       293 ~~~~~~~~~~~~~~----~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~  355 (356)
T PRK04870        293 FPSAANFILVRVPD----AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTV---GTPEENAQFLAALKAA  355 (356)
T ss_pred             CCCCCeEEEEECCC----HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeC---CCHHHHHHHHHHHHHh
Confidence            34456788888762    467889999999999865      256899993   3789999999999875

>PRK08637 hypothetical protein; Provisional

Probab=99.82  E-value=4.6e-19  Score=151.01  Aligned_cols=209  Identities=13%  Similarity=0.145  Sum_probs=139.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-----hCCEEEEeccccccCccCccc-c-c-ccCCCCCCE--E---
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-----YNVLFIADEVQTGLGRTGKLL-A-I-HYEDVRPDI--V---   86 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-----~~~~li~De~~~~~~~~g~~~-~-~-~~~~~~~~~--~---   86 (242)
                      +...++++.+++||+| .+.+.+.+++|+++|++     |+++||+||+|.+|...+... . + ...+...++  +   
T Consensus       145 ~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~  223 (388)
T PRK08637        145 KGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLD  223 (388)
T ss_pred             CCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEec
Confidence            4556677777899999 56678889999999875     999999999998874443211 1 1 111222232  2   


Q ss_pred             Eeecccc-CCccchheeEeC------hhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHH-------HH
Q psy6548          87 ILGKALS-GGLYPISAVLAD------DEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIEN-------AY  148 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~------~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~-------~~  148 (242)
                      ++||.++ +| +|+||++.+      +++++.+...    .....++.|.+++.++.++++   ++.+.++       ++
T Consensus       224 s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~  299 (388)
T PRK08637        224 GATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILK  299 (388)
T ss_pred             cccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence            4899877 89 999999853      5666665431    111223567788877776664   2233333       33


Q ss_pred             HHHHHHHHHHHhhcC--CCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHH
Q psy6548         149 KMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++.+.+.+.| +..+  ..+....+..|+++|++++.  .+..+++++|. ++||.+.+.+++++|++... .+++++++
T Consensus       300 ~r~~~~~~~l-~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~  375 (388)
T PRK08637        300 ERYEKTKEVL-YDGKYDDAWQAYPFNSGYFMCLKLKG--VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPE  375 (388)
T ss_pred             HHHHHHHHHH-HhhCCCCCcccccccceEEEEecCCh--HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHH
Confidence            3444444445 3321  12223344578899999864  46788999996 57998887677899999655 47899999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         226 GLDIIINTINTM  237 (242)
Q Consensus       226 ~~~~l~~~l~~~  237 (242)
                      ++++|.++++.+
T Consensus       376 ~~~~l~~~~~~~  387 (388)
T PRK08637        376 LFDSIYKAIKDL  387 (388)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=3.8e-19  Score=150.69  Aligned_cols=208  Identities=17%  Similarity=0.147  Sum_probs=140.5

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEEE-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIVI-   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~~-   87 (242)
                      +++ +...+++++++++.+++|++|.+. +.+.+++|+++|++ ++++|+||+|.+|...+. ....... ...+++++ 
T Consensus       149 ~~~l~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i  226 (371)
T PRK05166        149 LDALCAAVARAPRMLMFSNPSNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVL  226 (371)
T ss_pred             HHHHHHhhhcCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEE
Confidence            444 333345678888888999999654 66778888888864 889999999987752221 1111111 11223333 


Q ss_pred             --eecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhc
Q psy6548          88 --LGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        88 --~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                        |||.|+ +| +|+||++. ++++++.+...  ...++.+.+++.++.+++.... -+...+.++++++.+.+.| +..
T Consensus       227 ~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~  302 (371)
T PRK05166        227 RTFSKAYGLAG-LRVGYGLVSDPELVGLLDRV--RTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKEL-AEM  302 (371)
T ss_pred             eechHhhhcch-hheeeeecCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence              999999 99 99999765 67787777542  2345677788777666664211 1234456667777788888 554


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +  .. ..+..|+++|++++.   +..+++++|.++||.+.|+    ..+++|+++   .++++++++.+.|++++
T Consensus       303 g--~~-~~p~~g~fl~~~~~~---~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~---~~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        303 G--YR-IAPSRANFLFFDARR---PASAVAEALLRQGVIVKPWKQPGFETFIRVSI---GSPEENDHFVAALDKVL  369 (371)
T ss_pred             c--Ce-eCCCcCCEEEEeCCC---CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHHh
Confidence            3  22 234557888988654   3678999999999999876    257899993   36778888888887764

>PLN02231 alanine transaminase

Probab=99.82  E-value=5.4e-19  Score=155.25  Aligned_cols=213  Identities=12%  Similarity=0.120  Sum_probs=141.5

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cccc-cccc----CCC---CCCEEE---e
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GKLL-AIHY----EDV---RPDIVI---L   88 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~-~~~~----~~~---~~~~~~---~   88 (242)
                      +++++++.+++|++| .+.+.+.+++|+++|++||++||+||+|.++... +..+ ++..    .+.   ...+++   +
T Consensus       271 ~~k~ivl~nP~NPTG-~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~  349 (534)
T PLN02231        271 TVRALVVINPGNPTG-QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSV  349 (534)
T ss_pred             CeEEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEecc
Confidence            688888888899999 5667899999999999999999999999886442 2211 1111    111   123443   8


Q ss_pred             eccc-c-CCccchheeEe---ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-------H----H-hccHHHHHHHHH
Q psy6548          89 GKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-------I----L-EENMIENAYKMG  151 (242)
Q Consensus        89 sK~~-~-~g~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-------~----~-~~~~~~~~~~~~  151 (242)
                      ||++ + +| +|+||+++   ++++++.+..... .+.+.+.+.+.++..+++.       .    + .+.+.+.+++++
T Consensus       350 SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~  427 (534)
T PLN02231        350 SKGYYGECG-KRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRA  427 (534)
T ss_pred             CcccccCCc-cceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9987 5 79 99999976   5778877755322 2334455666665555521       1    0 123456788888


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEe--cCCch---------hHHHHHHHHH-HCCceeccC-------CCCEEEE
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSIL---------EVYDVCIKMK-DAGLVTKPI-------SNNIIRL  212 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~l~-~~gi~~~~~-------~~~~lR~  212 (242)
                      +.+.+.| +.++ ++....+..+++.|.++  +....         ....++.+|+ +.||.+.|+       +..++|+
T Consensus       428 ~~l~~~L-~~~~-gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Ri  505 (534)
T PLN02231        428 KTLEDAL-NSLE-GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRC  505 (534)
T ss_pred             HHHHHHH-hcCC-CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEE
Confidence            8888888 6663 22223345677888444  32100         1223556666 569999986       2346999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         213 SPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +  +..+++++++++++|.+.+++..++
T Consensus       506 t--~~~~~e~l~eal~RL~~~~~~~~~~  531 (534)
T PLN02231        506 T--ILPQEDKIPAIVSRLTEFHKSFMDE  531 (534)
T ss_pred             E--eCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9  5678999999999999998876543

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.82  E-value=2.2e-18  Score=147.56  Aligned_cols=213  Identities=13%  Similarity=0.142  Sum_probs=148.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...+++++++++..+++++|...+    +++|.++|++||+++++|++|+ ++..  ......  ..+|+++  
T Consensus       148 ~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~~--~~~d~~~~s  218 (403)
T TIGR01979       148 DLDDLEKLLTEKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQA--LDCDFYVFS  218 (403)
T ss_pred             CHHHHHHHhccCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCccc--cCCCEEEEe
Confidence            3454 4444668999999999999998877    8999999999999999999995 2211  122222  3457766  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCC---------------------CCCCCHHHHHHHHHHHHHHHh---ccH
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGS---------------------TYGGNPLACKLAMTALDVILE---ENM  143 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~a~a~l~~~~~---~~~  143 (242)
                      ++|.+| + .++|+++.++++++.+.+...++                     ..+.+..++.++.++++.+.+   +.+
T Consensus       219 ~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~  296 (403)
T TIGR01979       219 GHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENI  296 (403)
T ss_pred             cccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence            569775 3 45889989988877765432111                     012344566666677776654   345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CC
Q psy6548         144 IENAYKMGEIFRSELRSRLSP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NN  208 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~  208 (242)
                      .++..++++++++.| +.++. .+..  .....+.++.+.++.  .+..++.+.|.++||.++.+.            ++
T Consensus       297 ~~~~~~l~~~l~~~l-~~~~g~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~  373 (403)
T TIGR01979       297 EAHEHELTAYALERL-GEIPGLRIYGPRDAEDRGGIISFNVEG--VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPA  373 (403)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCEEEeCCCCccccCceEEEEeCC--cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCC
Confidence            678888888888888 65532 1111  111235677777765  356788899999999997532            57


Q ss_pred             EEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         209 IIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+|++++.++|++|++++++.|+++++.+
T Consensus       374 ~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       374 TCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             EEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.82  E-value=1.2e-18  Score=148.84  Aligned_cols=205  Identities=16%  Similarity=0.170  Sum_probs=139.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |++. +...++++++++++.++|++|.+.+    +++|.++|++||+++++|++|. .+ .. ...+.  ...+|+++  
T Consensus       145 ~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~-~~~~~--~~~~d~~~~s  215 (397)
T TIGR01976       145 HPDDLASLLSPRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HG-LIDVQ--ATGADFLTCS  215 (397)
T ss_pred             CHHHHHHhcCCCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-cc-CCCHH--HcCCCEEEEe
Confidence            3455 4444567999999999999998776    9999999999999999999985 21 11 11222  23457665  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCCCC----------CCCHHHHHHHHHHHHHHHhc----------------
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY----------GGNPLACKLAMTALDVILEE----------------  141 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~a~a~l~~~~~~----------------  141 (242)
                      ++|++|   .++|++++++++++.+.+....+.+          +.+....++..++++.+.+.                
T Consensus       216 ~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~  292 (397)
T TIGR01976       216 AYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASF  292 (397)
T ss_pred             chhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHH
Confidence            669986   5689999999988877764221111          22334455555666665432                


Q ss_pred             -cHHHHHHHHHHHHHHHHHhhcCC-CCCCe--EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------------
Q psy6548         142 -NMIENAYKMGEIFRSELRSRLSP-DIVPV--VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------------  205 (242)
Q Consensus       142 -~~~~~~~~~~~~l~~~l~~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------  205 (242)
                       ...++..++.+++++.| +.++. .+...  ....+.++.+.++.  .+..++.++|.++||.++.+            
T Consensus       293 ~~~~~~~~~l~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~  369 (397)
T TIGR01976       293 QAIDAYENRLAEYLLVGL-SDLPGVTLYGVARLAARVPTVSFTVHG--LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLG  369 (397)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCEEEeCCCCccCCCceEEEEeCC--cCHHHHHHHHHHCCeEEEeCccchHHHHHHhC
Confidence             12445566777777777 55542 11111  12245566666654  35778999999999999754            


Q ss_pred             ---CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         206 ---SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       206 ---~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                         ..+.+|++++.++|++|++++++.|
T Consensus       370 ~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       370 LNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence               2468999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.82  E-value=2.2e-18  Score=148.51  Aligned_cols=216  Identities=14%  Similarity=0.178  Sum_probs=150.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...+.++++|++..++|++|.+.|    +++|.++|++||+++++|++|. ++..  +....  ...+|+++  
T Consensus       162 ~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s  232 (424)
T PLN02855        162 DVEQLKELLSEKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--PVDVQ--TLGADFLVAS  232 (424)
T ss_pred             CHHHHHHHhccCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCCch--hcCCCEEEee
Confidence            4455 3333558999999999999998887    8899999999999999999995 2211  12222  23457766  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCCC------------------C---CCCHHHHHHHHHHHHHHHh---ccH
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGST------------------Y---GGNPLACKLAMTALDVILE---ENM  143 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------------------~---~~~~~~~~~a~a~l~~~~~---~~~  143 (242)
                      ++|.+| + .++|++++++++++.+.+...++.                  |   +.+..+.++..++++.+.+   +.+
T Consensus       233 ~~K~~g-p-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i  310 (424)
T PLN02855        233 SHKMCG-P-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRI  310 (424)
T ss_pred             cccccC-C-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHH
Confidence            669544 4 468999999888877765321110                  1   1334455556667776654   346


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-CCCCe----EeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccCC-----------
Q psy6548         144 IENAYKMGEIFRSELRSRLSP-DIVPV----VRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPIS-----------  206 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~-----------  206 (242)
                      .++.+++++++++.| +.++. .+...    ....+.++.+.++.  ....++.+.|.++ ||.++.+.           
T Consensus       311 ~~~~~~l~~~l~~~L-~~~~g~~i~~~~~~~~~~r~~~v~~~~~~--~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g  387 (424)
T PLN02855        311 HEYEVELGTYLYEKL-SSVPGVRIYGPKPSEGVGRAALCAFNVEG--IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLG  387 (424)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCEEEeCCCcccccCcccEEEEEECC--cCHHHHHHHhcccCCEEEechhhhhHHHHHHhC
Confidence            677888888888888 55532 11111    11234577777765  3567899999887 99987532           


Q ss_pred             -CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         207 -NNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       207 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                       .+.+|++++.++|++|++++++.|+++++.+..-
T Consensus       388 ~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~~~  422 (424)
T PLN02855        388 VNASARASLYFYNTKEEVDAFIHALKDTIAFFSSF  422 (424)
T ss_pred             CCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence             3679999999999999999999999998876543

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=3e-19  Score=150.36  Aligned_cols=195  Identities=20%  Similarity=0.247  Sum_probs=134.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g   95 (242)
                      +++++|++++++|++|.+. +.+.++++++.|+  +++||+||+|.+|.... .. .......+++++   |||+++ +|
T Consensus       146 ~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~-s~-~~~~~~~~~~iv~~S~SK~~~l~G  220 (354)
T PRK04635        146 DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEY-SV-ADLLASYPNLVVLRTLSKAFALAG  220 (354)
T ss_pred             cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCc-ch-HHHHhhCCCEEEEechHHHhhhhH
Confidence            5788999999999999665 5566777777665  49999999998774221 11 111112234433   899998 89


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                       +|+||+++++++++.+...  ...++.+.+.+.++.++++..  +. ++..+.+++.++.+.+.| +.++. + ...++
T Consensus       221 -lRlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~~  294 (354)
T PRK04635        221 -ARCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL-SMYGG-A-KVLEG  294 (354)
T ss_pred             -HHHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-eECCC
Confidence             9999999999998887653  224556666766666666421  11 223455667778888888 55542 1 11233


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      .|.++|+.++.    ..++.+.|.++||.++..+    ++++|++   ..+.++++++++.|++
T Consensus       295 ~g~f~~~~~~~----~~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~  351 (354)
T PRK04635        295 NGNYVLAKFDD----VDAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRN  351 (354)
T ss_pred             CCcEEEEECCC----HHHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHH
Confidence            46788887753    4678889999999997542    5689999   3588999999999875

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.82  E-value=3.1e-18  Score=145.23  Aligned_cols=206  Identities=16%  Similarity=0.211  Sum_probs=143.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+.++++|++..+++++|...+    +++|.++|++||+++++|++|+ ++..  .....  ...+|++++|
T Consensus       128 d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s  198 (373)
T cd06453         128 DLEALEKLLTERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM--PVDVQ--DLGCDFLAFS  198 (373)
T ss_pred             CHHHHHHHhcCCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce--eeecc--ccCCCEEEec
Confidence            4555 3333458899999999999997776    8999999999999999999986 2211  11112  2356888877


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC------------------CC---CCCHHHHHHHHHHHHHHHhc---cH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------TY---GGNPLACKLAMTALDVILEE---NM  143 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~------------------~~---~~~~~~~~~a~a~l~~~~~~---~~  143 (242)
                        |++++  .++|++++++++++.+.+...++                  .+   +.+..++.+..++++.+...   ++
T Consensus       199 ~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~  276 (373)
T cd06453         199 GHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAI  276 (373)
T ss_pred             cccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence              99885  46899999998888777532111                  01   23344555556677776653   35


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEE
Q psy6548         144 IENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNII  210 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~l  210 (242)
                      .++.+++++++++.| +.++. .........+.++++.++.  .+..++.++|.++||.+.++.            .+.+
T Consensus       277 ~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~i  353 (373)
T cd06453         277 AAHEHELTAYALERL-SEIPGVRVYGDAEDRAGVVSFNLEG--IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTV  353 (373)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCeEEeCCccccCCeEEEEECC--cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeE
Confidence            677777888888888 66542 1111112235677777764  367889999999999986432            5689


Q ss_pred             EEeccCcCCHHHHHHHHHHH
Q psy6548         211 RLSPALNITEQELREGLDII  230 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l  230 (242)
                      |++++..+|.+|+|++++.|
T Consensus       354 Ris~~~~~t~~di~~~~~~l  373 (373)
T cd06453         354 RASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             EEEecCCCCHHHHHHHHhhC
Confidence            99999999999999999764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.81  E-value=4.5e-18  Score=143.74  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=150.3

Q ss_pred             Chhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+.+ .+++.+.+..+.+++|.+.+    +++|.++|++||+++++|++|+ +|..  +..+..+  .+|+++
T Consensus       116 d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~--~~~~~~~--~~D~~~  186 (363)
T TIGR02326       116 DVVEVEAILAADPAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGI--PIDIAEL--HIDYLI  186 (363)
T ss_pred             CHHHHHHHHhhCCCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCc--ccchhhc--CccEEE
Confidence            4555  33333 35677788888899998776    8999999999999999999886 4322  2333333  457666


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCCC------------------CCCCCCCHHHHHHHHHHHHHHHhc----cH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH------------------GSTYGGNPLACKLAMTALDVILEE----NM  143 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~a~a~l~~~~~~----~~  143 (242)
                        ++|+++|+ .++|+++.+++.++.+.+...                  ...|+.+...+.+..++++.+..+    +.
T Consensus       187 ~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~  265 (363)
T TIGR02326       187 SSANKCIQGV-PGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAAR  265 (363)
T ss_pred             ecCccccccC-CcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Confidence              66999877 678999999888776543111                  123455666777777777766442    35


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeE-eeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCC---CCEEEEeccCcC
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNI  218 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~  218 (242)
                      .++++++++++++.| ++++....... ...+...++.++.. ..+...+.+.|.++||.++++.   .+.+|++++..+
T Consensus       266 ~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~  344 (363)
T TIGR02326       266 HQRYQQNQKTLVAGM-RALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEV  344 (363)
T ss_pred             HHHHHHHHHHHHHHH-HHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCC
Confidence            678888899999999 66653222111 12334566777652 1356789999999999998763   478999987788


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTIN  235 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~  235 (242)
                      +.++++++++.|++++.
T Consensus       345 ~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       345 DAADITRLLTAIGKAMY  361 (363)
T ss_pred             CHHHHHHHHHHHHHHhC
Confidence            99999999999988753

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK07908 hypothetical protein; Provisional

Probab=99.81  E-value=2e-18  Score=145.21  Aligned_cols=197  Identities=12%  Similarity=0.133  Sum_probs=135.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-C
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-G   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~   94 (242)
                      +.+++++++.+++|++|.+.+    .++|.++|+ ++.++|+||+|.++. .+.......... ++++   +|||.++ +
T Consensus       137 ~~~~~~i~l~np~NPTG~~~~----~~~l~~l~~-~~~~iIvDe~y~~~~-~~~~~~l~~~~~-~~~i~i~S~SK~~~l~  209 (349)
T PRK07908        137 PDDADLVVIGNPTNPTSVLHP----AEQLLALRR-PGRILVVDEAFADAV-PGEPESLAGDDL-PGVLVLRSLTKTWSLA  209 (349)
T ss_pred             ccCCCEEEEcCCCCCCCCCcC----HHHHHHHHh-cCCEEEEECcchhhc-cCCccccccccC-CCEEEEeecccccCCc
Confidence            346788888889999997776    446677776 477888999998763 222212111111 2333   3899998 9


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      | +|+||+++++++++.+.+...  .+..+++.+.++.+.++..  . -+...+.++++++.+.+.| +.++  +....+
T Consensus       210 G-lRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~~~~~p  283 (349)
T PRK07908        210 G-LRVGYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGL-RAVG--ARVVDP  283 (349)
T ss_pred             c-ceeeeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH-HhCC--cEeccC
Confidence            9 999999999999888876432  2445566555544443310  0 1234566777788888888 5542  222233


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ..|+++|++++.    .+.+.+.|.++||.+.++      +++++|+++   .++++++++++.|++++.
T Consensus       284 ~~g~~~~~~~~~----~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        284 AAAPFVLVRVPD----AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             CCceEEEEECCc----HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence            568899998875    367888899999999875      257999994   478899999999988764

>TIGR01814 kynureninase kynureninase

Probab=99.81  E-value=5.3e-18  Score=145.33  Aligned_cols=201  Identities=14%  Similarity=0.178  Sum_probs=139.8

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe--eccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL--GKALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--sK~~~~g~   96 (242)
                      ++++++|+++++++++|.+.|    +++|.++|++||+++++|++|+ +|..  ++.+..+  ..|++++  .|+++|| 
T Consensus       169 ~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~--gvD~~~~s~hK~l~g~-  238 (406)
T TIGR01814       169 GDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDW--GVDFACWCTYKYLNAG-  238 (406)
T ss_pred             CCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccC--CCCEEEEcCccccCCC-
Confidence            578999999999999998887    9999999999999999999996 3222  2222333  4577764  4999877 


Q ss_pred             cchheeEeChhhhhccCCCCCCC-----------------------CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGS-----------------------TYGGNPLACKLAMTALDVILE---ENMIENAYKM  150 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~  150 (242)
                      .+ |.++..++..+.+.+...++                       ..+.+..+++++.++++.+.+   +...++.+.+
T Consensus       239 pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  317 (406)
T TIGR01814       239 PG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLL  317 (406)
T ss_pred             CC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            55 55554443333343321110                       012345566667778888755   3466788888


Q ss_pred             HHHHHHHHHhhc-C--CCC--CC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec-cCcCCHHH
Q psy6548         151 GEIFRSELRSRL-S--PDI--VP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP-ALNITEQE  222 (242)
Q Consensus       151 ~~~l~~~l~~~l-~--~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~-~~~~t~e~  222 (242)
                      .+++++.| +.+ +  ..+  ..  .....+.++.+.++ .  +.+++.+.|.++||.+....++.+|+++ ++++|++|
T Consensus       318 ~~~l~~~l-~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~--~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~d  393 (406)
T TIGR01814       318 TDYLEELI-KARCGGPPVLTIITPRDHAQRGCQLSLTHP-V--PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVD  393 (406)
T ss_pred             HHHHHHHH-HhhcCCCCceEEeCCCChhhcCCeEEEEec-C--CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHH
Confidence            88888888 443 1  111  11  11123456667666 2  4678999999999999877678999999 78999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTI  234 (242)
Q Consensus       223 i~~~~~~l~~~l  234 (242)
                      ++++++.|++++
T Consensus       394 id~l~~~l~~~~  405 (406)
T TIGR01814       394 VYDAVNVLEEIL  405 (406)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN02397 aspartate transaminase

Probab=99.80  E-value=1.4e-18  Score=149.40  Aligned_cols=203  Identities=13%  Similarity=0.094  Sum_probs=134.0

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--c-cccccC-CCCCCEE---Eeecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--L-LAIHYE-DVRPDIV---ILGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~-~~~~~~-~~~~~~~---~~sK~   91 (242)
                      ++++.++++.+++||+|. +.+.+.+++|+++|++||+++|+||+|.+|...+.  . .....+ ....+++   +|||.
T Consensus       192 ~~~~~~i~~~~P~NPTG~-v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~  270 (423)
T PLN02397        192 PDGSFVLLHACAHNPTGV-DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKN  270 (423)
T ss_pred             CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECccc
Confidence            356888888989999995 55778899999999999999999999998754321  1 111111 1112333   38999


Q ss_pred             cc-CCccchheeE--e-Chhhhhc----cCCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVL--A-DDEVMGT----LVPGTHGSTYGGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~--~-~~~~~~~----l~~~~~~~~~~~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~~~~l~  155 (242)
                      ++ +| +|+||++  . ++++++.    +.........+.+.+++.++.++++...        -++..+.++++++.+.
T Consensus       271 ~~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~  349 (423)
T PLN02397        271 MGLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY  349 (423)
T ss_pred             CCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 89 9999984  3 5554432    2221112223345566666555554211        1234567788888888


Q ss_pred             HHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         156 SELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       156 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.| +.++.  .+....+..|+++|+.++      .+++++|+ +.||.+.+.+    |+++.. .+.+.+++++++|.+
T Consensus       350 ~~L-~~~~~~~~~~~~~p~gg~fl~~~l~------~~~~~~Ll~~~~V~v~~~~----Ri~~~~-~~~~~i~~~~~~i~~  417 (423)
T PLN02397        350 DAL-EARGSPGDWSHITKQIGMFSFTGLN------KEQVDRMTKEYHIYMTRDG----RISMAG-LSSKNVPYLADAIHA  417 (423)
T ss_pred             HHH-HhcCCCCCCCcccCCceEEEecCCC------HHHHHHHHHhCCEEECCCC----eEEEee-CCHHHHHHHHHHHHH
Confidence            888 66541  121123557788888763      34777886 4599997543    888432 688999999999999


Q ss_pred             HHH
Q psy6548         233 TIN  235 (242)
Q Consensus       233 ~l~  235 (242)
                      ++.
T Consensus       418 ~~~  420 (423)
T PLN02397        418 VVT  420 (423)
T ss_pred             HHh
Confidence            874

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.80  E-value=2.8e-18  Score=144.88  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=132.7

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEEE---eecccc-C
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVI---LGKALS-G   94 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~---~sK~~~-~   94 (242)
                      .+++++++.+++||+|.+++    .++|.++++++++ +|+||+|.+|...+.... .......+.+++   |||.|+ +
T Consensus       147 ~~~~~~~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~  221 (360)
T PRK07392        147 TPNDGLLLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLP  221 (360)
T ss_pred             cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCC
Confidence            46788888889999997775    4566777888885 666999988754332111 111122233333   899999 9


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                      | +|+||+++++++++.+....  ..++.+.+++.++.++++... .+...+.++++++.+.+.| +.++. +. ..++.
T Consensus       222 G-lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~-~~~~~  295 (360)
T PRK07392        222 G-LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGL-ASLPG-LT-PLPSA  295 (360)
T ss_pred             c-hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-cE-ECCCC
Confidence            9 99999999998888876532  346678888888777765321 1223445666777777777 55532 11 12355


Q ss_pred             ceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++++|++++.   +..++++.++ ++||.+.|+      +++++|+++   .+.++.+++.+.|++++.
T Consensus       296 ~~fl~~~~~~---~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~---~~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        296 ANFLLVQSQG---SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAV---RTEAENQRLLEALAAILA  358 (360)
T ss_pred             CCEEEEEcCC---CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh
Confidence            7888888754   4577887764 679999876      247999993   345566777777666543

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.80  E-value=8e-19  Score=146.80  Aligned_cols=201  Identities=14%  Similarity=0.114  Sum_probs=133.3

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCCCCCEEE--eeccccCCc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRPDIVI--LGKALSGGL   96 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~   96 (242)
                      ++++|++++++|+ |... +.+.+++|+++|++||+++|+||+|..+  ...|..  .......+|+++  ++|+++.  
T Consensus       127 ~~~~v~l~~p~n~-g~~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~--  200 (338)
T cd06502         127 PPSLVSLENTTEG-GTVY-PLDELKAISALAKENGLPLHLDGARLANAAAALGVA--LKTYKSGVDSVSFCLSKGGGA--  200 (338)
T ss_pred             cceEEEEEeecCC-cccc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCC--HHHHHhcCCEEEEeccccCCC--
Confidence            7899999998886 4344 6678999999999999999999998422  112221  111112345554  8899983  


Q ss_pred             cchhe-eEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          97 YPISA-VLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        97 ~~~g~-~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                       +.|+ +++++++++.+.+..  .+++++.++++++++.++++.-......+++.++++++++.| +.++..   ..+..
T Consensus       201 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~---~~~~~  275 (338)
T cd06502         201 -PVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEAL-EELGGL---ESEVQ  275 (338)
T ss_pred             -ccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-HhcCCC---ccccc
Confidence             2244 557888888776532  224445556666666666653111234577777888899999 666531   11234


Q ss_pred             ceeEEEEecCCchhHHHHHHHHH---HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~---~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.++.+.++........+.+.+.   ++|+.+.+.+.+++|+++++.++++|++++++++++
T Consensus       276 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         276 TNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             CCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            55666666433233444555554   689999887669999999999999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.80  E-value=1.2e-17  Score=141.89  Aligned_cols=212  Identities=16%  Similarity=0.195  Sum_probs=142.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++++++.++|++|.+.+    +++|.++|++||+++++|++|+ ++..  +.  +......|++++|
T Consensus       125 ~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~--~~--~~~~~~~D~~~~s  195 (379)
T TIGR03402       125 DLEELRAAITDDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI--PI--DLKEMNIDMLSLS  195 (379)
T ss_pred             CHHHHHHhcCCCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc--cc--CcccCCCCEEEEc
Confidence            4455 4444568899999999999998776    7899999999999999999996 3211  22  2223467888887


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        | +.|+ .++|+++.+++.  .+.+...+       ...+.+.....+..++++.+.+  ++..++.+++++++++.|
T Consensus       196 ~~K-~~gp-~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l  271 (379)
T TIGR03402       196 GHK-LHGP-KGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL  271 (379)
T ss_pred             HHH-cCCC-CceEEEEECCCC--CCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              9 5555 568888777654  23332211       1123445556666667776644  344577778888888888


Q ss_pred             Hhh-cCCC-CCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEE
Q psy6548         159 RSR-LSPD-IVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRL  212 (242)
Q Consensus       159 ~~~-l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~  212 (242)
                       +. ++.. ...... .....+.+.++.  .+..++...|.++||.++.+.                       .+.+|+
T Consensus       272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~  348 (379)
T TIGR03402       272 -LARIPDARLNGDPTKRLPNTVNISFEY--IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRF  348 (379)
T ss_pred             -HhhCCCEEEeCCCccCCCCEEEEEecC--CCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEE
Confidence             43 4321 111111 111234344443  356788999989999997531                       368999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         213 SPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +++.++|++||+++++.|+++++.+.
T Consensus       349 S~~~~~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       349 SLSRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887754

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.79  E-value=1.2e-17  Score=141.99  Aligned_cols=216  Identities=18%  Similarity=0.213  Sum_probs=145.9

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      .|+++ +...++++++|+++.++|++|.+.+    +++|.++|++||+++++|++|. ++..  +.....+  ..|+++ 
T Consensus       126 ~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~--~~~~~~~--~~d~~~~  196 (381)
T PRK02948        126 IRLVDLERAITPDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL--PIDVFEM--GIDSLSV  196 (381)
T ss_pred             CCHHHHHHhcCCCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccc--ccCcccC--CCCEEEe
Confidence            35565 3333457889999999999998876    8899999999999999998875 4322  2222333  356666 


Q ss_pred             -eeccccCCccchheeEeChhh-hhccCCC---CCC-CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548          88 -LGKALSGGLYPISAVLADDEV-MGTLVPG---THG-STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        88 -~sK~~~~g~~~~g~~~~~~~~-~~~l~~~---~~~-~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~  159 (242)
                       ++|.+| + .++|+++.++++ +..+.+.   ... ..++.+.+++.++.++++...+  ++..++++++++++++.| 
T Consensus       197 s~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L-  273 (381)
T PRK02948        197 SAHKIYG-P-KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQI-  273 (381)
T ss_pred             cHHhcCC-C-CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence             679877 2 347888777654 1111110   001 2335677788888888876532  456788888999999999 


Q ss_pred             hhcCCCCCCeE-e--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         160 SRLSPDIVPVV-R--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       160 ~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                      +.++..+.... .  ....++.+.++.  .+..++...|.++||.++.+.                       .+.+|++
T Consensus       274 ~~~~~~v~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis  351 (381)
T PRK02948        274 QTLPLPIEVEGHSTSCLPHIIGVTIKG--IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFS  351 (381)
T ss_pred             hcCCCCEEEeCCCccCcCCEEEEEeCC--CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEE
Confidence            66652111100 0  112234444443  246777888889999997532                       3689999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++..+|++|++++++.|+++++.+.+
T Consensus       352 ~~~~~t~~di~~l~~~l~~~~~~~~~  377 (381)
T PRK02948        352 FGQQTTKDQIDTTIHALETIGNQFYR  377 (381)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999887654

>PRK08354 putative aminotransferase; Provisional

Probab=99.79  E-value=1e-17  Score=138.73  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=116.3

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-CCcc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-GGLY   97 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~g~~   97 (242)
                      ++.+++..++||+|. ..+.+.+++|+++|++||+++|+||+|.+|...+...  .    .+.++   +|||+|+ +| +
T Consensus       118 ~~~vi~~~P~NPTG~-~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~--~----~~~vi~~~S~SK~~~l~G-l  189 (311)
T PRK08354        118 NSVVFFCNPNNPDGK-FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP--E----GENIIKLRTFTKSYGLPG-I  189 (311)
T ss_pred             CCEEEEecCCCCCCC-ccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc--C----CCcEEEEeccHhhcCCcc-c
Confidence            345666666899995 5567889999999999999999999998874332211  1    22333   3899999 99 9


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN  177 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  177 (242)
                      |+||+++.   .+.++...  ..+..+..+++++.+.++    +. .+++++..+.++... +.+.....  .++.+.++
T Consensus       190 RiG~~v~~---~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~-~~l~~~l~--~~~~~~~~  256 (311)
T PRK08354        190 RVGYVKGF---EEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREK-ERFEKALY--VKSDANFF  256 (311)
T ss_pred             eeeeeeeh---HHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHH-HHHHHhcC--CCCCCcEE
Confidence            99999883   33343322  233445555555444433    11 133334344444433 32221111  12344555


Q ss_pred             EEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         178 AIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ++.++    +..++++.|.++||.+.++.    ++++|++   ..+.++.+++++.|+++
T Consensus       257 ~~~~~----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        257 IKDVG----DAEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW  309 (311)
T ss_pred             EEECC----CHHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence            56543    35779999999999999862    4799999   33667788888888764

>PLN02672 methionine S-methyltransferase

Probab=99.79  E-value=1e-17  Score=154.62  Aligned_cols=207  Identities=14%  Similarity=0.176  Sum_probs=132.8

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc---ccc----cC-CCCC--CEEE---e
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL---AIH----YE-DVRP--DIVI---L   88 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~---~~~----~~-~~~~--~~~~---~   88 (242)
                      ..+++++|.+||+| .+++++.+++|+++|++||++||+||+|.++...+...   ...    .+ ...+  .+++   |
T Consensus       830 ~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf  908 (1082)
T PLN02672        830 PWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL  908 (1082)
T ss_pred             CEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence            34555566569999 56688999999999999999999999998764433211   010    11 1101  2333   8


Q ss_pred             ecccc-CCccchheeEeCh-hhhhccCCCCCCCC-CCCCHHHHHHHHHHHHH----HH--hccHHHHHHHHHHHHHHHHH
Q psy6548          89 GKALS-GGLYPISAVLADD-EVMGTLVPGTHGST-YGGNPLACKLAMTALDV----IL--EENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~a~a~l~~----~~--~~~~~~~~~~~~~~l~~~l~  159 (242)
                      ||.++ +| +|+||+++++ ++++.+........ +..+.+++.+++++++.    +.  -.+..+.++++++++.+.| 
T Consensus       909 SKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L-  986 (1082)
T PLN02672        909 STELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETL-  986 (1082)
T ss_pred             HHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            99988 89 9999999864 47777765311111 11223333333332210    00  1234455777788888888 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecC----------C------chhHHHHHHHHHHC-CceeccC----CCCEEEEeccCcC
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDK----------S------ILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNI  218 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~----------~------~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~~  218 (242)
                      +..+  +....+..|+++|+.++.          .      ..+..+++++|+++ ||.+.|+    .++++|++  +..
T Consensus       987 ~~~G--i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~ 1062 (1082)
T PLN02672        987 EACG--WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FAL 1062 (1082)
T ss_pred             HHCC--CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecC
Confidence            5543  222234467888886531          0      12567899999876 9999986    35799999  456


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTIN  235 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~  235 (242)
                      +++++++++++|++..+
T Consensus      1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            88899999999988654

>PRK10534 L-threonine aldolase; Provisional

Probab=99.79  E-value=3.7e-18  Score=142.63  Aligned_cols=197  Identities=13%  Similarity=0.178  Sum_probs=131.5

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc---CcccccccCCCCCC-EEEeeccccCCc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GKLLAIHYEDVRPD-IVILGKALSGGL   96 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~---g~~~~~~~~~~~~~-~~~~sK~~~~g~   96 (242)
                      ++++|++++++  +|.+. +.+.++++.++|++|++++++||+|. |+..   +.... ......+. +++|||+++   
T Consensus       129 ~~~lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~-~~~~~~~~~~~s~SK~~~---  200 (333)
T PRK10534        129 RTRLLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELK-EITQYCDSFTICLSKGLG---  200 (333)
T ss_pred             cceEEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHH-HHHhcCCEEEEEeEcCCC---
Confidence            57888888644  47544 56789999999999999999999986 3211   11110 00011111 345999888   


Q ss_pred             cchh-eeEeChhhhhccCCCCCCCC--CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          97 YPIS-AVLADDEVMGTLVPGTHGST--YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        97 ~~~g-~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                      .++| |+++++++++.++.....+.  ++.+.++++++.++++..  .+..+..++.++++.+.| ++++-.+   .++.
T Consensus       201 ~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L-~~~g~~~---~~~~  274 (333)
T PRK10534        201 TPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQL-REAGADV---MRQD  274 (333)
T ss_pred             CcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH-HhCCCcc---CCCC
Confidence            4567 57789999888875332221  222345555566565532  223444556678888888 6654211   2235


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++++++.++.  .+..++.+.|.++||.++++  ..+|++.+..+|+|++++++++|++.+.
T Consensus       275 ~nfv~~~~~~--~~~~~~~~~l~~~gi~v~~~--~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        275 TNMLFVRVGE--EQAAALGEYMRERNVLINAS--PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             ceEEEEECCc--hhHHHHHHHHHHcCeeecCC--ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            7888888864  25678899999999999886  3589987667899999999999987653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.78  E-value=3.2e-17  Score=139.50  Aligned_cols=213  Identities=18%  Similarity=0.203  Sum_probs=142.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++++++.++|++|.+.+    +++|.++|++||+++++|++|. ++..  +....  ....|++++|
T Consensus       129 d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~~~~--~~~~D~~~~s  199 (382)
T TIGR03403       129 TAEQVREAITEKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PVDVQ--KAGVDFLSFS  199 (382)
T ss_pred             CHHHHHHhcccCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--ccCcc--ccCCCEEEEc
Confidence            4555 4444567899999999999998877    8899999999999999999985 2211  12222  3346788766


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCC-------CCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |.+| + .++|+++.++..  .+.+...       ...++.+..++.++.++++...+  +...++.+++++++++.|
T Consensus       200 ~~K~~g-p-~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L  275 (382)
T TIGR03403       200 AHKFHG-P-KGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDAL  275 (382)
T ss_pred             chhhCC-C-CceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              9765 2 346777665443  1222111       11234566666666677775543  334577778888888888


Q ss_pred             HhhcCCC-CCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         159 RSRLSPD-IVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                       ++++.. +.... .....++.+.++.  .+..++..+|.++||.++.+.                       .+.+|++
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s  352 (382)
T TIGR03403       276 -LELPDVFVVGDREHRVPNTILISIKG--VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLS  352 (382)
T ss_pred             -hcCCCEEEECCCCCCcCCEEEEEeCC--CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEE
Confidence             655421 11111 1113355666654  357788888999999998421                       2579999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++.++|++|++++++.|+++++++..
T Consensus       353 ~~~~~t~~did~~~~~l~~~~~~~~~  378 (382)
T TIGR03403       353 LSRFTTEEEIDYTIEVFKKAVQRLRA  378 (382)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999887653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.78  E-value=4e-18  Score=145.66  Aligned_cols=201  Identities=15%  Similarity=0.158  Sum_probs=128.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cc-cccccc-CCCCCCEE---Eeecccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GK-LLAIHY-EDVRPDIV---ILGKALS   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~-~~~~~~~~---~~sK~~~   93 (242)
                      .++.++++.++|||+|. +.+++.+++|+++|++||+++|+||+|.+|... +. ...... .+...+++   +|||.++
T Consensus       171 ~~~~~~i~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~  249 (396)
T PRK09257        171 AGDVVLLHGCCHNPTGA-DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG  249 (396)
T ss_pred             CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence            34667777889999995 567889999999999999999999999887532 11 111111 11122333   3999999


Q ss_pred             -CCccchheeEe---Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHHHHHHHHHH
Q psy6548          94 -GGLYPISAVLA---DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        94 -~g~~~~g~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~------~~--~~~~~~~~~~~~~l~~~  157 (242)
                       +| +|+||+++   +++    ++..+.........+.+.+.+.++.+.++..      ..  ++..+.++++++.+.+.
T Consensus       250 ~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~  328 (396)
T PRK09257        250 LYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEA  328 (396)
T ss_pred             ccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             69 99999873   333    3333322212222234566665555554421      11  23566777788888888


Q ss_pred             HHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         158 LRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       158 l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      | +....  ......+..|+++|+.++.     +.+.+.+.++||.+.|.+    |++++. .+++++++++++|.++
T Consensus       329 L-~~~~~~~~~~~~~p~gg~~~w~~l~~-----~~~~~l~~~~~V~~~p~~----ri~~~~-~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        329 L-KAKGPSRDFDFIARQRGMFSYSGLTP-----EQVDRLREEFGVYAVGSG----RINVAG-LNESNIDYVAEAIAAV  395 (396)
T ss_pred             H-HhcCCCCCcccccccceEEEecCCCH-----HHHHHHHHcCCEEEcCCC----eEEEee-CCHHHHHHHHHHHHhh
Confidence            8 55432  1222345568899987643     233444467799998752    888543 6899999999999875

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.78  E-value=2.2e-17  Score=139.90  Aligned_cols=211  Identities=14%  Similarity=0.137  Sum_probs=138.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-c-Ccc--cccccCCCCCCE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-T-GKL--LAIHYEDVRPDI   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~-g~~--~~~~~~~~~~~~   85 (242)
                      |+++ +...+++++++++..+.+++|.+.|    +++|.++|++||+++++|++|+++.. . ...  +....  ...|.
T Consensus       140 d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~  213 (371)
T PRK13520        140 DVKAVEDLIDDNTIGIVGIAGTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDS  213 (371)
T ss_pred             CHHHHHHHHhhCCEEEEEEcCCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCce
Confidence            5666 4433445666665556678887776    99999999999999999999975421 1 111  11111  13455


Q ss_pred             EEe--eccccCCccchheeEe-ChhhhhccCCCC---CCC-----CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Q psy6548          86 VIL--GKALSGGLYPISAVLA-DDEVMGTLVPGT---HGS-----TYGGNPLACKLAMTALDVILEE---NMIENAYKMG  151 (242)
Q Consensus        86 ~~~--sK~~~~g~~~~g~~~~-~~~~~~~l~~~~---~~~-----~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~  151 (242)
                      +++  .|+..+| .++|+++. ++++++.+....   .+.     ..+.+...+.++.++++.+..+   +..++..+++
T Consensus       214 ~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~  292 (371)
T PRK13520        214 ITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENT  292 (371)
T ss_pred             EEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHH
Confidence            553  3765567 78887775 555666553210   000     0112334566667777765443   3677888888


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      +++++.| +.++-.  ........++.+.++    +.+++.++|.++||.++.+. .+.+|++++..+|++|++++++.|
T Consensus       293 ~~l~~~L-~~~g~~--~~~~~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l  365 (371)
T PRK13520        293 RWLAEEL-KERGFE--PVIEPVLNIVAFDDP----NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDL  365 (371)
T ss_pred             HHHHHHH-HhCCCE--EecCCCceEEEEecC----CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            9999988 555311  011223446666654    36789999999999998764 568999988889999999999999


Q ss_pred             HHHHH
Q psy6548         231 INTIN  235 (242)
Q Consensus       231 ~~~l~  235 (242)
                      +++++
T Consensus       366 ~~~~~  370 (371)
T PRK13520        366 KEVKK  370 (371)
T ss_pred             HHHhh
Confidence            88764

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.78  E-value=3.1e-17  Score=140.32  Aligned_cols=207  Identities=20%  Similarity=0.208  Sum_probs=150.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHH--HHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL--CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l--~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g   95 (242)
                      ++++++++.++.+++|.+.|    +++|.++  |++||+++++|++++ ++.  .+..++.+  ..|+++  .+|+|+++
T Consensus       136 ~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~--~~id~~~~--~~D~~~~s~~K~l~~P  206 (401)
T PLN02409        136 HKIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGA--LDFRMDEW--GVDVALTGSQKALSLP  206 (401)
T ss_pred             CCccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCC--cccccccc--CccEEEEcCccccCcC
Confidence            47999999999999997776    7778888  999999999999986 321  12222333  456666  56999977


Q ss_pred             ccchheeEeChhhhhccCCCCC---------------CC---CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVPGTH---------------GS---TYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF  154 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~---------------~~---~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l  154 (242)
                       .++|+++.++++++.+.+...               ..   .++.+...+.+..++++.+.+   +++.++.+++++++
T Consensus       207 -~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l  285 (401)
T PLN02409        207 -TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEAT  285 (401)
T ss_pred             -CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             789999999988887654210               01   224455566777778887654   35678888899999


Q ss_pred             HHHHHhhcCCCCCCe-Ee-eeceeEEEEecCCchhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHH
Q psy6548         155 RSELRSRLSPDIVPV-VR-GKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                      ++.| +.++-..... .. ....+.++.++.. .+..++.+.|. +.||.+..+    .++.+|++...+++.+++..++
T Consensus       286 ~~~L-~~~g~~~~~~~~~~~s~~v~~~~~p~~-~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~  363 (401)
T PLN02409        286 RLAV-EAWGLKLCTKKPEWRSDTVTAVVVPEG-IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGAL  363 (401)
T ss_pred             HHHH-HHcCCeeccCChhhcccceEEEeCCCC-CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHH
Confidence            9999 6665322221 11 1334566777654 56778887775 569999865    3578999998899999999999


Q ss_pred             HHHHHHHHHHh
Q psy6548         228 DIIINTINTMA  238 (242)
Q Consensus       228 ~~l~~~l~~~~  238 (242)
                      +.|+++++++.
T Consensus       364 ~~~~~~l~~~g  374 (401)
T PLN02409        364 AGVEMVLKDVG  374 (401)
T ss_pred             HHHHHHHHHcC
Confidence            99999998753

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.78  E-value=1.8e-17  Score=141.11  Aligned_cols=207  Identities=12%  Similarity=0.102  Sum_probs=134.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~   97 (242)
                      +++++|+++++++++|...+    +++|+++|++||+++++|++|+ +|..+  .....++  .|+++  ++|+++++ .
T Consensus       157 ~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g--~D~~~~s~~K~l~~~-~  226 (387)
T PRK09331        157 KPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLG--ADFIVGSGHKSMAAS-A  226 (387)
T ss_pred             CCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcC--CCEEEeeCcccccCC-C
Confidence            37899999999999997766    9999999999999999999996 22111  2222333  45555  77999977 7


Q ss_pred             chheeEeChhhhhccCCCCCCCC------C--CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcC-CCCC
Q psy6548          98 PISAVLADDEVMGTLVPGTHGST------Y--GGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLS-PDIV  167 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~------~--~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~-~~~~  167 (242)
                      ++|++.+++++++.+........      +  +.++....+++++++.+.. .+..++..++.+++++.| +.++ -...
T Consensus       227 ~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L-~~l~g~~~~  305 (387)
T PRK09331        227 PSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDEL-EKIEGFKQL  305 (387)
T ss_pred             CEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCEEEe
Confidence            89999999998887755321110      1  1122233334455554432 223445566777888888 6663 1111


Q ss_pred             CeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ........++.++.+.-       .....++.+.|.++||...+.+.+.+|...+..+++++++++++.|+++++++
T Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~  382 (387)
T PRK09331        306 GEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY  382 (387)
T ss_pred             ccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence            11122344555554421       02235699999999998544445555554455689999999999999988764

>KOG0634|consensus

Probab=99.78  E-value=4.6e-17  Score=133.68  Aligned_cols=216  Identities=17%  Similarity=0.147  Sum_probs=151.0

Q ss_pred             CCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc---Cc------ccc--------cc---c
Q psy6548          20 PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GK------LLA--------IH---Y   78 (242)
Q Consensus        20 ~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~---g~------~~~--------~~---~   78 (242)
                      .+.....+-| .||++|. ..+.+.-++|.+||++|+.+||.||.|--+...   +.      ...        .+   .
T Consensus       202 ~~p~vlYTIPTgqNPTG~-tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls  280 (472)
T KOG0634|consen  202 PKPHVLYTIPTGQNPTGN-TLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS  280 (472)
T ss_pred             CCCeEEEeCcCCCCCCCC-ccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence            4567777777 5889995 456688999999999999999999999533211   10      000        00   0


Q ss_pred             CCCCCCEE---EeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHH-------HHHH
Q psy6548          79 EDVRPDIV---ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI-------ENAY  148 (242)
Q Consensus        79 ~~~~~~~~---~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~-------~~~~  148 (242)
                      .+...+++   +|||-++.| +|+||+.+++-+++++.......|.+.+.+.+...-+.++.+-++++.       ....
T Consensus       281 lDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt  359 (472)
T KOG0634|consen  281 LDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT  359 (472)
T ss_pred             ccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122333   399999999 999999999988887776555556666667666666666665554333       3333


Q ss_pred             HHHHHHHHHHHhhcCCC-CCCeEeeeceeEEEEec-------CCch-hHHHHHHHHHHCCceeccC----------CCC-
Q psy6548         149 KMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLD-------KSIL-EVYDVCIKMKDAGLVTKPI----------SNN-  208 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~l~~~gi~~~~~----------~~~-  208 (242)
                      .+++.+...|.+-++.. +...++..|+++|++++       .... ..+.+...+.++||.+.++          +.+ 
T Consensus       360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki  439 (472)
T KOG0634|consen  360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI  439 (472)
T ss_pred             HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence            46666667776667654 55667788999999997       3311 2344666777899999765          133 


Q ss_pred             EEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         209 IIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ++|++.++. +.|+++++++++..++++.-
T Consensus       440 ffRls~a~a-~~e~l~~g~~rf~~~ike~f  468 (472)
T KOG0634|consen  440 FFRLSIAFA-EPEKLDEGIERFGSVIKEHF  468 (472)
T ss_pred             eEEEEeecC-CHHHHHHHHHHHHHHHHHHh
Confidence            999998877 77899999999999998753

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.78  E-value=9.2e-17  Score=136.01  Aligned_cols=216  Identities=13%  Similarity=0.145  Sum_probs=147.0

Q ss_pred             Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+. +.+++++++..+++++|...|    +++|.++|++||+++|+|++|. ++..  +.....  ..+|+++
T Consensus       118 d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~~-~g~~--~~~~~~--~~~d~~v  188 (368)
T PRK13479        118 DAAEVEAALAADPRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMSS-FGAI--PIDIAE--LGIDALI  188 (368)
T ss_pred             CHHHHHHHHHhCCCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEcccc-cCCc--cccccc--cCceEEE
Confidence            4555  3333 345778888889999998776    8899999999999999997764 4322  222222  3456666


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHh----ccHH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTALDVILE----ENMI  144 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~a~a~l~~~~~----~~~~  144 (242)
                        ++|++.|+ .++||+++++++++.+.....                 ...++.+...+.+..++++.+.+    ++..
T Consensus       189 ~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~  267 (368)
T PRK13479        189 SSANKCIEGV-PGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG  267 (368)
T ss_pred             ecCccccccC-CCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence              66998766 668999999988877665321                 11134555666666677776543    2455


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC---CCEEEEeccCcCC
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNIT  219 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~t  219 (242)
                      ++++++++++++.| +.++........ .......+.++... .+..++.++|.++||.++++.   .+.+|++...+++
T Consensus       268 ~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t  346 (368)
T PRK13479        268 ARYANNQRTLVAGM-RALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVD  346 (368)
T ss_pred             HHHHHHHHHHHHHH-HHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCC
Confidence            77788888888888 666532211111 11122334433321 356789999999999998753   3589999767789


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTINTM  237 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~  237 (242)
                      ++|++++++.|+++++++
T Consensus       347 ~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        347 AADIRRLVAAIAEALYWM  364 (368)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999998865

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.77  E-value=8.3e-18  Score=140.71  Aligned_cols=188  Identities=19%  Similarity=0.231  Sum_probs=126.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g   95 (242)
                      .+++++++..++|++|.+.+    .+++.+++ ++++++|+||+|.+|...  ... ......+++++   |||.|+ +|
T Consensus       139 ~~~~~v~~~~P~NPtG~~~~----~~~l~~i~-~~~~~ii~De~y~~~~~~--~~~-~~~~~~~~vi~l~S~SK~~~l~G  210 (337)
T PRK03967        139 KNASAVFICSPNNPTGNLQP----EEEILKVL-ETGKPVVLDEAYAEFSGK--SLI-GLIDEYPNLILLRTFSKAFGLAG  210 (337)
T ss_pred             cCCCEEEEeCCCCCCCCCCC----HHHHHHHH-hcCCEEEEECchhhhccc--chH-HHHhhCCCEEEEecchHhhcchh
Confidence            45667777888999997665    45556666 479999999999877421  111 11111234443   899999 99


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG  174 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  174 (242)
                       +|+||+++++++++.+....  ..++.+.+++.++.++++..+. .+..+...+.++.+.+.| ...      ..++.+
T Consensus       211 -lRiG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~------~~~~~~  280 (337)
T PRK03967        211 -IRAGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRREL-GEY------AYPSDA  280 (337)
T ss_pred             -hhheeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-ccC------cCCCCC
Confidence             99999999999988887632  3456677888887766653211 122334445555555555 322      124567


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++|+.++        +.+.|.++||.+++.   ..+++|++   ..+.++.+++++.|+++...
T Consensus       281 ~~~~~~~~--------~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        281 NFLLLKLD--------AYDYLLENGIVVRKLSGRLEGHIRVT---VGKREENDEFIKALKEIKEG  334 (337)
T ss_pred             cEEEEhHH--------HHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHHh
Confidence            78887542        678889999999754   35689999   33678889999999887654

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.76  E-value=2.1e-16  Score=135.34  Aligned_cols=211  Identities=19%  Similarity=0.202  Sum_probs=140.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccC-C-CCCCEEE--ee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYE-D-VRPDIVI--LG   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~-~-~~~~~~~--~s   89 (242)
                      +.+.+..+..+++.+..+.++ ..|    +++++++|++||+++++|++| .|+.. +.... ..+ . ...|+++  ++
T Consensus       213 ~~~~~~~~plvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~~Glig-g~~~~-~~~~~~~~~D~vtgT~h  285 (493)
T PRK13580        213 AALAREFKPLILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHFAGLVA-GKVFT-GDEDPVPHADIVTTTTH  285 (493)
T ss_pred             HHHHhhcCCEEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchhhceec-cccch-hhcCCCCCCcEEEeCCh
Confidence            334455666777777666644 554    999999999999999999999 44311 11111 111 1 1457666  67


Q ss_pred             ccccCCccchheeEeChhhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          90 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN-PLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      |+|.|+  +.|++++++++++.+... ..+.++++ +...+++..+++.+.++   ++.+++.++.+++++.| ++.+..
T Consensus       286 KaL~GP--~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L-~~~G~~  361 (493)
T PRK13580        286 KTLRGP--RGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGF-LKRGAR  361 (493)
T ss_pred             hhccCC--CeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            999764  358888999988888432 22333322 22333333345544433   37888999999999999 766632


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CC---CCEEEEeccC----cCCHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------IS---NNIIRLSPAL----NITEQELREGLDIII  231 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~---~~~lR~~~~~----~~t~e~i~~~~~~l~  231 (242)
                      +... ...++++++.+.+.......+.+.|.+.||.+.+       .+   ...||++++.    .++++|++++++.|.
T Consensus       362 vv~g-gTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~  440 (493)
T PRK13580        362 LVTG-GTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIV  440 (493)
T ss_pred             ccCC-CCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHH
Confidence            2211 1345788888877523345777899999999963       23   5789999887    667999999999999


Q ss_pred             HHHHHH
Q psy6548         232 NTINTM  237 (242)
Q Consensus       232 ~~l~~~  237 (242)
                      ++++..
T Consensus       441 ~~l~~~  446 (493)
T PRK13580        441 KVLSNT  446 (493)
T ss_pred             HHHHhh
Confidence            888754

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.76  E-value=2.1e-16  Score=134.18  Aligned_cols=209  Identities=17%  Similarity=0.223  Sum_probs=140.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL-   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~-   88 (242)
                      |+++ +...+.++++++++.++|++|.+.+    +++|.++|++||+++|+|++|+ +|..  .+....  ..+|++++ 
T Consensus       126 d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~--~~~~~~--~~~D~~~~s  196 (376)
T TIGR01977       126 SPERIKRAIKTNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVI--PIDMTE--LAIDMLAFT  196 (376)
T ss_pred             CHHHHHHhcCCCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCcc--CCCchh--cCCCEEEec
Confidence            4555 3333557899999999999998776    8899999999999999999995 3222  112222  34677764 


Q ss_pred             -eccccCCccchheeEeChhh-hhccCCCC---CC-------------CCCCCCHHHHHHHHHHHHHHHhc---cHHHHH
Q psy6548          89 -GKALSGGLYPISAVLADDEV-MGTLVPGT---HG-------------STYGGNPLACKLAMTALDVILEE---NMIENA  147 (242)
Q Consensus        89 -sK~~~~g~~~~g~~~~~~~~-~~~l~~~~---~~-------------~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~  147 (242)
                       .|+++++ .++|.++.+++. +..+....   ..             ...+.+.....+..++++.+.+.   .+.++.
T Consensus       197 ~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~  275 (376)
T TIGR01977       197 GHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKE  275 (376)
T ss_pred             ccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence             4999865 567777666543 12221110   00             01123445566666778877653   356777


Q ss_pred             HHHHHHHHHHHHhhcCC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC--------------CCCE
Q psy6548         148 YKMGEIFRSELRSRLSP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI--------------SNNI  209 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--------------~~~~  209 (242)
                      +.+.+++++.| ++... .+..  .....+.++++.++.  .+..++.+.|.++ ||.++.+              ..+.
T Consensus       276 ~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~  352 (376)
T TIGR01977       276 CMLTEKLLNGL-REINKVKIYGPADPANRVGVVSFTVEG--IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGT  352 (376)
T ss_pred             HHHHHHHHHHH-hcCCCeEEeCCCCccccCCeEEEEECC--CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCe
Confidence            88888888888 54432 1111  111235677777764  4678899999988 9888653              3478


Q ss_pred             EEEeccCcCCHHHHHHHHHHHHH
Q psy6548         210 IRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       210 lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +|++++..+|++|++++++.|++
T Consensus       353 iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       353 IRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             EEEecCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.75  E-value=2.2e-16  Score=135.40  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=135.0

Q ss_pred             CChhh--hcCCCCCEEEEEEc-ccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +|+++  +.+...++++|+++ +++++.   .+    +++|.++|++||+++|+|++|+ +|-.+.+......+ ..|++
T Consensus       155 ~d~~~le~~l~~~~~klVi~~~~~~g~~---~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~  225 (416)
T PRK13034        155 IDYDEVEELAKEHKPKLIIAGFSAYPRE---LD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVV  225 (416)
T ss_pred             cCHHHHHHHHhhcCCeEEEECCCccccc---cC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEE
Confidence            67776  44444567888884 444432   22    8899999999999999999994 22222221111111 35666


Q ss_pred             E--eeccccCCccchheeEeCh-hhhhccCCCCCCC-CCCCCHHHHHH-HHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548          87 I--LGKALSGGLYPISAVLADD-EVMGTLVPGTHGS-TYGGNPLACKL-AMTALDVILE--ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~-a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~  159 (242)
                      +  ++|+++|+ . .|++++++ .+.+.++.....+ +.+.++...++ +.+.++.++.  +++.++++++.+++++.| 
T Consensus       226 ~~s~~K~l~g~-~-GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L-  302 (416)
T PRK13034        226 TTTTHKTLRGP-R-GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVL-  302 (416)
T ss_pred             EEeCcccCCCC-C-CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-
Confidence            6  67999765 3 45666654 4445554422221 11122333333 3344444322  345789999999999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----------CCCCEEEEeccC----cCCHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPAL----NITEQELRE  225 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~lR~~~~~----~~t~e~i~~  225 (242)
                      ++++-.... ....++++.+.+.........+.++|.++||++.+          ..+..+|++++.    .++++|+++
T Consensus       303 ~~~G~~~~~-~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~  381 (416)
T PRK13034        303 KERGYDLVS-GGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFRE  381 (416)
T ss_pred             HHcCCEecc-CCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHH
Confidence            665522211 11345777777766534567777899999999974          134579999888    888999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      +++.|++++..
T Consensus       382 l~~~l~~~~~~  392 (416)
T PRK13034        382 IANWILDVLDD  392 (416)
T ss_pred             HHHHHHHHHhc
Confidence            99999988874

>KOG0259|consensus

Probab=99.75  E-value=2e-16  Score=128.07  Aligned_cols=219  Identities=16%  Similarity=0.186  Sum_probs=143.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccC-CCCCCEEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYE-DVRPDIVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~-~~~~~~~~   87 (242)
                      |++. +.+.+.+|+++++.+++|++| .+++++-|++|+++|+++++++|.||+|..+.+.+.++. +..+ .+.| +++
T Consensus       188 DL~~veal~DENT~AivviNP~NPcG-nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP-Vit  265 (447)
T KOG0259|consen  188 DLDGVEALADENTVAIVVINPNNPCG-NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP-VIT  265 (447)
T ss_pred             chHHHHHhhccCeeEEEEeCCCCCCc-ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc-eEe
Confidence            4555 778889999999999999999 567888999999999999999999999977655555442 2222 2334 444


Q ss_pred             ---eecccc-CCccchheeEeChhh--------hhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHH
Q psy6548          88 ---LGKALS-GGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN----MIENAYKMG  151 (242)
Q Consensus        88 ---~sK~~~-~g~~~~g~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~----~~~~~~~~~  151 (242)
                         +||.+- .| ||+||++....-        .+.+..... -+...+.+.|+|.-.-|+.- .++    -..-++.+.
T Consensus       266 lggisKrW~VPG-WRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na  342 (447)
T KOG0259|consen  266 LGGISKRWIVPG-WRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNA  342 (447)
T ss_pred             ecccccccccCC-ceeeeEEEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhH
Confidence               778766 89 999999865321        111111111 12233344444332222210 122    345667778


Q ss_pred             HHHHHHHHhhcCCCC-CCeEeeeceeEEEEecCCc----hhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHH
Q psy6548         152 EIFRSELRSRLSPDI-VPVVRGKGLLNAIVLDKSI----LEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQ  221 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e  221 (242)
                      +..-+.| ++++.-. ...+++. .+.++.+.-..    .+-.+|++.|. |+.+++-|+    -++++|++  .....+
T Consensus       343 ~l~y~~L-k~IP~l~cp~kPeg~-mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~  418 (447)
T KOG0259|consen  343 DLCYSRL-KDIPCLTCPVKPEGC-MYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEE  418 (447)
T ss_pred             HHHHHHH-hcCCCcccCcCCCcc-eEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChH
Confidence            8888888 7877532 3333433 44554443321    44567888876 568888776    47899999  678889


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy6548         222 ELREGLDIIINTINTMA  238 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~  238 (242)
                      .++++.+||++.-.+..
T Consensus       419 ~leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  419 MLEEAFSRIKEFCDRHS  435 (447)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999988766544

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.75  E-value=1.1e-16  Score=135.58  Aligned_cols=202  Identities=20%  Similarity=0.294  Sum_probs=147.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+++++++++..+.+.+|...|    +++|.++|++||+++++|.+|+ ++..  +..++  ...+|++++|
T Consensus       128 ~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~--~id~~--~~~~D~~~~s  198 (371)
T PF00266_consen  128 DLEDLEEALNPDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV--PIDLD--ELGADFLVFS  198 (371)
T ss_dssp             SHHHHHHHHHTTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS--S--TT--TTTESEEEEE
T ss_pred             hhhhhhhhhccccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc--ccccc--ccccceeeec
Confidence            3444 3333589999999999999998777    9999999999999999999996 3222  22223  3456888866


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCCC------------------C---CCCHHHHHHHHHHHHHHHh---ccH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST------------------Y---GGNPLACKLAMTALDVILE---ENM  143 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------------------~---~~~~~~~~~a~a~l~~~~~---~~~  143 (242)
                        | |+|+ .++|++..+++.++++.+...++.                  +   +.+.....+..++++.+..   +.+
T Consensus       199 ~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i  276 (371)
T PF00266_consen  199 SHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERI  276 (371)
T ss_dssp             STS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-cCCC-CchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccc
Confidence              9 8887 789999999999998865433222                  1   2445566666677887744   456


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCC---CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CC
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIV---PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NN  208 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~  208 (242)
                      .++..++.+++++.| +.++....   ......+.++.+.++.  .+...+.+.|.++||.++.+.            .+
T Consensus       277 ~~~~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~  353 (371)
T PF00266_consen  277 RERIRELAEYLREAL-EELPGIEVLGPDDEPRRPSIVSFNLPG--SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGG  353 (371)
T ss_dssp             HHHHHHHHHHHHHHH-HHTTTEEESSSSCGGBGTTEEEEEETT--SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTT
T ss_pred             hhhhhhHHHHHHhhh-hcCCceeEeeecccccccceEEEeecC--CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCC
Confidence            788889999999999 77764211   2234456778888855  478999999999999998741            38


Q ss_pred             EEEEeccCcCCHHHHHHH
Q psy6548         209 IIRLSPALNITEQELREG  226 (242)
Q Consensus       209 ~lR~~~~~~~t~e~i~~~  226 (242)
                      .+|++++.++|++|++++
T Consensus       354 ~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  354 VIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EEEEE-GTTSSHHHHHHH
T ss_pred             EEEEeccCCCCHHHHhhC
Confidence            999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.75  E-value=1.4e-16  Score=136.51  Aligned_cols=213  Identities=16%  Similarity=0.149  Sum_probs=135.8

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+.+++++++++.+..+  |...+    +++|+++|++||+++|+|++| .|+...|.. ... .. ..|+++
T Consensus       149 d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~-~~~-~~-~~dv~~  219 (402)
T cd00378         149 DYDALEKMALEFKPKLIVAGASAY--PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVF-PNP-LP-GADVVT  219 (402)
T ss_pred             CHHHHHHHHHhCCCCEEEecCccc--CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccC-CCc-cc-CCcEEE
Confidence            5666  444455677777765433  32222    899999999999999999997 544222211 111 11 346554


Q ss_pred             --eeccccCCccchheeEeCh-hhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHh
Q psy6548          88 --LGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGGN-PLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~  160 (242)
                        ++|+| +| +++|++++++ ++++.+......+.++.+ .....++..++.....   +++.++++++++++++.| +
T Consensus       220 ~s~sK~l-~G-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L-~  296 (402)
T cd00378         220 TTTHKTL-RG-PRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEAL-K  296 (402)
T ss_pred             eccccCC-CC-CCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence              78999 55 7889998876 787777543222223322 2233232233332222   346677888899999999 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccCc----CCHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPALN----ITEQELREG  226 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~~----~t~e~i~~~  226 (242)
                      .++-... ..+..++++|+.++....+...+.+.|.++||.+.+.          ..+.+|++++..    ++++|++++
T Consensus       297 ~~g~~~~-~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~  375 (402)
T cd00378         297 ERGFKVV-SGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI  375 (402)
T ss_pred             hCCCeEe-ecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence            5542111 1123578889988753234567788888899999631          346899987664    479999999


Q ss_pred             HHHHHHHHHH
Q psy6548         227 LDIIINTINT  236 (242)
Q Consensus       227 ~~~l~~~l~~  236 (242)
                      ++.|++++++
T Consensus       376 ~~~l~~~~~~  385 (402)
T cd00378         376 ADFIARALKD  385 (402)
T ss_pred             HHHHHHHHhc
Confidence            9999998765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>KOG1368|consensus

Probab=99.73  E-value=2.2e-17  Score=129.60  Aligned_cols=210  Identities=14%  Similarity=0.136  Sum_probs=151.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE--EEeeccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI--VILGKALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~~sK~~~~g~   96 (242)
                      .+.+++|++|+.++++|+.+.+-+|+.++.++|++||+.+..|.+.-.-.....+.....+.-..|-  +++||++|+++
T Consensus       152 ~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV  231 (384)
T KOG1368|consen  152 MPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV  231 (384)
T ss_pred             CCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc
Confidence            4579999999999999988889999999999999999999999876311111111111222222343  34999999652


Q ss_pred             cchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe-ee
Q psy6548          97 YPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVR-GK  173 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~  173 (242)
                        .+.+++++++++..+..  ..++.+..+.+.+++++-+++.  .-....+.+++++.+.+.+ +..+. +...++ ..
T Consensus       232 --GSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~-~~~~~-i~v~v~a~e  305 (384)
T KOG1368|consen  232 --GSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYI-NTPEE-IRVEVPAVE  305 (384)
T ss_pred             --ccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHh-ccccc-eeeecchhh
Confidence              33566888888765432  3455556666666666666652  2225667778888888888 65442 333333 45


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.++.+.+.+...+++++++.+.+.||.+.++...++|+.+|...|.++++.++..+.+.+
T Consensus       306 tNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  306 TNIVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             cceeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            6788888877767899999999999999999888889999999999999999999995443

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.73  E-value=2.7e-16  Score=133.34  Aligned_cols=209  Identities=12%  Similarity=0.138  Sum_probs=135.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-c---Cccc-ccccCCCCC
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-T---GKLL-AIHYEDVRP   83 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~---g~~~-~~~~~~~~~   83 (242)
                      |+++  +.+.++...++++.| .+++|.+.+    +++|.++|++||+++++|++|.++.. .   |... ..+..-...
T Consensus       142 d~~~l~~~l~~~~~~vv~~~~-~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~  216 (373)
T TIGR03812       142 DVKDVEDLIDDNTIGIVGIAG-TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV  216 (373)
T ss_pred             CHHHHHHHHhhCcEEEEEECC-CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCC
Confidence            5666  333333345666665 678887765    99999999999999999999964311 0   0000 001100133


Q ss_pred             CEEEe--eccccCCccchheeE-eChhhhhccCCCCC--CCC------CCCCHHHHHHHHHHHHHHHhc---cHHHHHHH
Q psy6548          84 DIVIL--GKALSGGLYPISAVL-ADDEVMGTLVPGTH--GST------YGGNPLACKLAMTALDVILEE---NMIENAYK  149 (242)
Q Consensus        84 ~~~~~--sK~~~~g~~~~g~~~-~~~~~~~~l~~~~~--~~~------~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~  149 (242)
                      |.+++  .|+..++ .++|+++ .++++++.+.....  ...      .+.+....+++.++++.+..+   ++.++..+
T Consensus       217 d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~  295 (373)
T TIGR03812       217 QSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECME  295 (373)
T ss_pred             CEEEECccccCCCc-CCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            55554  3854466 6777655 57777766542110  000      123345666677778766443   46788889


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +++++++.| +.++....  ..+...++.+.+++    ..++.++|.++||.++.. .++.+|++++..+|++|++++++
T Consensus       296 ~~~~l~~~L-~~~g~~~~--~~~~~~~v~~~~~~----~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~  368 (373)
T TIGR03812       296 NTRYLVEEL-KKIGFEPV--IEPVLNIVAFEVDD----PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLE  368 (373)
T ss_pred             HHHHHHHHH-HhCCCeEE--cCCCceEEEEEeCC----HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHH
Confidence            999999999 66652111  12334556666543    357999999999999876 56789999988899999999999


Q ss_pred             HHHH
Q psy6548         229 IIIN  232 (242)
Q Consensus       229 ~l~~  232 (242)
                      .|++
T Consensus       369 ~L~~  372 (373)
T TIGR03812       369 DLKE  372 (373)
T ss_pred             HHhh
Confidence            9975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=6e-16  Score=121.82  Aligned_cols=216  Identities=14%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEE---eecccc
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVI---LGKALS   93 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~---~sK~~~   93 (242)
                      ...++.+||+.-+-|++| .+.+++++.+|.++++.||+++|+|.+|. .-..+--+. +.. -..++++.   +||.=-
T Consensus       176 i~e~~g~ic~SRPtNPTG-NVlTdeE~~kldalA~~~giPliIDnAYg-~PFP~iifs-d~~~~w~~NiilC~SLSK~GL  252 (417)
T COG3977         176 IGESTGAICVSRPTNPTG-NVLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFS-DATPLWNENIILCMSLSKLGL  252 (417)
T ss_pred             cccccceEEecCCCCCCC-CcccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecc-cccccCCCCEEEEeehhhcCC
Confidence            357899999999999999 56678899999999999999999999984 211221121 111 12345443   667444


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHH---H--HHhccHHHHHHHHHHHHHHHHHhhcCC-CCC
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD---V--ILEENMIENAYKMGEIFRSELRSRLSP-DIV  167 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~---~--~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~  167 (242)
                      .| .|+|.+++++++++.+...--..+........+.+...++   +  +.++-++.-.++..+...+.|++.++. .+.
T Consensus       253 PG-~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~  331 (417)
T COG3977         253 PG-SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCL  331 (417)
T ss_pred             CC-cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcccee
Confidence            67 8999999999999988764222222222233322222222   1  111223444555666666666555653 333


Q ss_pred             CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .+-+....+.|+.+.+-....++++++|+++|+++.|+             .+.++|++  +..+++++++.+++|.+.+
T Consensus       332 iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~v  409 (417)
T COG3977         332 IHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEV  409 (417)
T ss_pred             eecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHH
Confidence            44444556777776665567899999999999999886             24689999  8889999999999999988


Q ss_pred             HHHhh
Q psy6548         235 NTMAA  239 (242)
Q Consensus       235 ~~~~~  239 (242)
                      ++.-+
T Consensus       410 e~~yq  414 (417)
T COG3977         410 ERAYQ  414 (417)
T ss_pred             HHHHh
Confidence            87644

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.73  E-value=2.9e-16  Score=136.22  Aligned_cols=213  Identities=13%  Similarity=0.122  Sum_probs=135.9

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~   87 (242)
                      |+++  +.+.+.+++.+++.  .+..|...+    +++|.++|+++|+++++|++|+ +|..+... ..+..  ..|+++
T Consensus       170 d~~~L~~~l~~~~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~  240 (452)
T PTZ00094        170 DYDKLEELAKAFRPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVT  240 (452)
T ss_pred             CHHHHHHHHHHhCCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEE
Confidence            7777  44544455555552  345675665    9999999999999999999995 33232111 11111  468887


Q ss_pred             ee--ccccCCccchheeEeChhhhhccCC----CCC-CCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Q psy6548          88 LG--KALSGGLYPISAVLADDEVMGTLVP----GTH-GSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        88 ~s--K~~~~g~~~~g~~~~~~~~~~~l~~----~~~-~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~  157 (242)
                      +|  |+|+|+ . .|+++.++++.+.+.+    ... ....+.++...++..++++.+..   +++.+++.++.+++++.
T Consensus       241 ~S~hK~l~GP-~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~  318 (452)
T PTZ00094        241 TTTHKSLRGP-R-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA  318 (452)
T ss_pred             cCCccCCCCC-C-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence            54  999876 4 4777776654332211    111 11113455566666677887744   34678889999999999


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C-----CCCEEEEeccCcCC----HHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPALNIT----EQELR  224 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~lR~~~~~~~t----~e~i~  224 (242)
                      | ++.+..+..... ......+.+...+.+..++...|.++||.+..    +     .++.+|++++...+    ++|++
T Consensus       319 L-~~~g~~v~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~  396 (452)
T PTZ00094        319 L-EKRGYDLVTGGT-DNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFK  396 (452)
T ss_pred             H-HhCCcEEecCCC-CCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHH
Confidence            9 554321111101 12344555544334677888888888999952    2     24789999977765    99999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINT  236 (242)
Q Consensus       225 ~~~~~l~~~l~~  236 (242)
                      ++++.|.+++..
T Consensus       397 ~l~~~l~~~~~~  408 (452)
T PTZ00094        397 FVADFLDRAVKL  408 (452)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.73  E-value=1.4e-15  Score=130.35  Aligned_cols=211  Identities=12%  Similarity=0.169  Sum_probs=136.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++++++.++|++|...+    +++|.++|++||+++++|++|+ ++..  +..  ..+..+|++++|
T Consensus       131 d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~--~~~--~~~~~~D~~~~s  201 (402)
T TIGR02006       131 DLEELKAAIRDDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI--PIN--VNELKVDLMSIS  201 (402)
T ss_pred             CHHHHHHhcCCCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc--ccC--ccccCCCEEEEe
Confidence            4555 4444567899999999999998776    8999999999999999999996 3222  122  224467898887


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |.++ + .++|+++.+++....+.+...++       ..+.+.....+..++++.+..  +...++.+++++++++.|
T Consensus       202 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l  279 (402)
T TIGR02006       202 GHKIYG-P-KGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI  279 (402)
T ss_pred             hhhhcC-C-CceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              9765 4 56888888876555555432221       113344455555567776654  345677888888888888


Q ss_pred             HhhcCCC-CCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEEEe
Q psy6548         159 RSRLSPD-IVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR~~  213 (242)
                       +.++.. ......... ..+.+.+..  ...+.+...|  +++.++.+                       ..+.+|++
T Consensus       280 -~~~~~v~~~~~~~~~~p~~~~v~f~~--~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S  354 (402)
T TIGR02006       280 -KSIEEVYLNGDLEHRVPGNLNVSFNY--VEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFT  354 (402)
T ss_pred             -hcCCCEEEeCCccccCCCeEEEEEeC--cCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEE
Confidence             655421 111111111 122233332  2334555444  45554321                       13789999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         214 PALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++.++|++|++++++.|+++++.+
T Consensus       355 ~~~~~t~edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       355 IGRFTTEEEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988775

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.73  E-value=7e-16  Score=127.36  Aligned_cols=213  Identities=17%  Similarity=0.222  Sum_probs=153.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +.+..++|.+|.+..++|.+|.+.|    +++|.++|+++++++.+|.+|+ +|+..  .  +......|+++||
T Consensus       130 ~~e~L~~al~~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i--~~~~~~vD~ls~S  200 (386)
T COG1104         130 DLEQLEEALRPDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--I--DLEELGVDLLSFS  200 (386)
T ss_pred             cHHHHHHhcCCCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee--c--cccccCcceEEee
Confidence            4555 5556678999999999999998888    9999999999999999999996 43332  2  2223347999987


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCCCC-------CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGSTY-------GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |-.| + -++|+++.++..  .+.+..+++.+       +.|..+.++.-+|++...+  +....+++++++++.+.|
T Consensus       201 aHK~~G-p-kGiGaLyv~~~~--~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l  276 (386)
T COG1104         201 AHKFGG-P-KGIGALYVRPGV--RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGL  276 (386)
T ss_pred             hhhccC-C-CceEEEEECCCC--ccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5555 3 457887775543  34444444332       3355566555556665543  346788899999999999


Q ss_pred             Hhhc-CCCCCC-e-EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEEE
Q psy6548         159 RSRL-SPDIVP-V-VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIRL  212 (242)
Q Consensus       159 ~~~l-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR~  212 (242)
                       +.. +..... . .+.....+.+.++.  ...+.+.-.|-.+||.++.+                       -.+.|||
T Consensus       277 -~~~~p~~~~~g~~~~rlP~~~~~~f~g--v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~  353 (386)
T COG1104         277 -LEIIPDVYLNGDDEPRLPNILNFSFPG--VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRF  353 (386)
T ss_pred             -HhcCCcEEEcCCcccCCCCeEEEEeCC--CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEE
Confidence             544 432111 1 23344566677776  47888888888899999753                       1368999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         213 SPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++...+|++|++++++.+.+++++++.
T Consensus       354 S~g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         354 SLGRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998765

>KOG1357|consensus

Probab=99.72  E-value=5.2e-17  Score=133.91  Aligned_cols=221  Identities=18%  Similarity=0.251  Sum_probs=154.0

Q ss_pred             cccccCCCChhh--hcCC---------CC---CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--
Q psy6548           3 LQFPVKSKQVPA--KLKS---------NP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--   66 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~---------~~---~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--   66 (242)
                      .+..|.|||..+  +.++         ++   +.-.|++|+.+++.|.++.    ++++++++++|.++++.||+|+.  
T Consensus       244 tiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA  319 (519)
T KOG1357|consen  244 TTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGA  319 (519)
T ss_pred             eEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccc
Confidence            567899999988  4442         11   3457999999999998886    89999999999999999999963  


Q ss_pred             cCccCcccccccCCCCCC-----EEEeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q psy6548          67 LGRTGKLLAIHYEDVRPD-----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVIL  139 (242)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~-----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~  139 (242)
                      .|++|.+ ..+.++.++.     +.+|.|+|+++   .|++.+++++++.++..+....+  +.+|+.+.....+++.+.
T Consensus       320 ~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~  395 (519)
T KOG1357|consen  320 MGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIM  395 (519)
T ss_pred             cCCCCcc-eeeccCCCchhheeecceehhhcccc---cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhc
Confidence            4566654 4466666543     23378999932   46799999999998875444333  234444434455677664


Q ss_pred             h-------ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------
Q psy6548         140 E-------ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------  205 (242)
Q Consensus       140 ~-------~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------  205 (242)
                      -       ++..+++.++..++|..+ +..+  +.......++.+.+-+-.. .....+.++|+++++.+...       
T Consensus       396 G~dgt~~g~~k~~~l~~ns~yfr~~l-~~~g--fivyG~~dSpVvplll~~~-~k~~~f~r~~l~~nigvVvvgfPatpl  471 (519)
T KOG1357|consen  396 GEDGTNRGRQKIERLAENSRYFRWEL-QKMG--FIVYGNNDSPVVPLLLYGP-AKIVAFSREMLERNIGVVVVGFPATPL  471 (519)
T ss_pred             CCCcccHHHHHHHHHHhhhHHHHHhh-hcCc--EEEecCCCCCcceeeecCc-ccccHHHHHHHhcCceEEEEeCCCchH
Confidence            2       234567777888888777 5443  2333333444444444444 45678899999997766422       


Q ss_pred             CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 ~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      -..+.|++.+..++.|+++++++.+.+.-+
T Consensus       472 ~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~  501 (519)
T KOG1357|consen  472 LESRARFCLSASHTKEDLDRALEVIDRVGD  501 (519)
T ss_pred             HHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence            246789999999999999999999877653

>PLN02242 methionine gamma-lyase

Probab=99.71  E-value=1.9e-16  Score=135.53  Aligned_cols=215  Identities=14%  Similarity=0.153  Sum_probs=139.5

Q ss_pred             cccCCCChhh-hcCCCC-CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~-~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      ..++.+|++. +...+. ++++|+++.++|++|.+.+    +++|+++|++||+++|+|++|..+. .. +   ..++  
T Consensus       145 ~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~-~~-~---~~~g--  213 (418)
T PLN02242        145 TFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMV-LS-P---ARLG--  213 (418)
T ss_pred             EEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccC-CC-H---HHcC--
Confidence            3456667877 444444 6999999999999997774    9999999999999999999996432 11 1   1123  


Q ss_pred             CCEEE--eecccc-CCccc-hheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALS-GGLYP-ISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFR  155 (242)
Q Consensus        83 ~~~~~--~sK~~~-~g~~~-~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~  155 (242)
                      .|+++  +||+++ +| .+ .||+++++++++.+.....+  ...+.++..+.+++.+.. ++. +...++.+++++.+.
T Consensus       214 ~divv~S~SK~l~g~g-~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~~~~a~~la  291 (418)
T PLN02242        214 ADVVVHSISKFISGGA-DIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-LPHLSLRMKEHCRRAMEYA  291 (418)
T ss_pred             CcEEEEeCccccCCCC-CceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-CCcHHHHHHHHHHHHHHHH
Confidence            46555  889998 45 55 58899998888877654232  122333444444443332 211 234567888999999


Q ss_pred             HHHHhhcCCCCC-----C---------eE---eeeceeEEEEecCCchhHHHHHHHHHHC----CceeccC---------
Q psy6548         156 SELRSRLSPDIV-----P---------VV---RGKGLLNAIVLDKSILEVYDVCIKMKDA----GLVTKPI---------  205 (242)
Q Consensus       156 ~~l~~~l~~~~~-----~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~----gi~~~~~---------  205 (242)
                      +.| +..+..+.     .         ..   .+.|.++.|++... ..+..|++.|.--    .+.++.+         
T Consensus       292 ~~L-~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~-~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p  369 (418)
T PLN02242        292 KRM-KELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE-ERANRLMRYLQNSTQFGFMAVSLGYYETLMSCS  369 (418)
T ss_pred             HHH-HhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH-HHHHHHHHHhhcccccceeeecCCCCCceeeCC
Confidence            999 65542110     0         01   24577889999653 5677788887621    1122111         


Q ss_pred             ------------------CCCEEEEeccCcCCHHH-HHHHHHHHHHHHHHHh
Q psy6548         206 ------------------SNNIIRLSPALNITEQE-LREGLDIIINTINTMA  238 (242)
Q Consensus       206 ------------------~~~~lR~~~~~~~t~e~-i~~~~~~l~~~l~~~~  238 (242)
                                        ..+.+|++    ...|+ .+.+++.|+++++.++
T Consensus       370 ~~~~~~~~~~~~~~~~gi~~~liRls----vGlE~~~~dli~dl~~al~~~~  417 (418)
T PLN02242        370 GSSTSSELDPEEKAAAGISPGLVRMS----VGYTGTLEQRWSQFEKALSAMK  417 (418)
T ss_pred             CccccccCCHHHHHhcCCCCCeEEEE----ecCCCCHHHHHHHHHHHHHHhh
Confidence                              24689999    44564 8888888888888764

>PRK06460 hypothetical protein; Provisional

Probab=99.71  E-value=4e-16  Score=132.13  Aligned_cols=216  Identities=14%  Similarity=0.160  Sum_probs=137.8

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.++.+. +.+.++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|.... ...     .....
T Consensus       112 v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~-~~~-----~l~~~  181 (376)
T PRK06460        112 VDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPI-NQK-----PLELG  181 (376)
T ss_pred             EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCccc-cCC-----hhhcC
Confidence            34456665444 5555678999999999999997776    7889999999999999999986321 111     11123


Q ss_pred             CCEEE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  +||+++|  + .++|++++++++++.+.........+.++..+..++..++.++  ...+++.+++.++.+.|
T Consensus       182 ~divv~S~sK~l~G~~~-~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L  258 (376)
T PRK06460        182 ADIVVHSASKFLAGHND-VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFL  258 (376)
T ss_pred             CCEEEeecceeccCCCC-ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHH
Confidence            46655  7899974  3 4689999999888877653323333344444333333344433  35677888999999999


Q ss_pred             HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC-------
Q psy6548         159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI-------  205 (242)
Q Consensus       159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~-------  205 (242)
                       ++.+..       ...         ...+.|.++.|++..+...+..|.+.|.-  .+.-+        .|.       
T Consensus       259 -~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~  337 (376)
T PRK06460        259 -EGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTL  337 (376)
T ss_pred             -HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccccccccC
Confidence             554420       111         11345788999987542445566666631  11111        110       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                ..+.+|++    ...|+.+.+++.|+++++.+
T Consensus       338 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        338 SLEERKIVGITDSLLRLS----VGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence                      24689999    45567788888888887654

>KOG1358|consensus

Probab=99.71  E-value=5.9e-16  Score=125.70  Aligned_cols=226  Identities=19%  Similarity=0.212  Sum_probs=156.8

Q ss_pred             ccccccCCCChhh--hcCCCCC------------EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c
Q psy6548           2 SLQFPVKSKQVPA--KLKSNPN------------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G   66 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~~~~~------------~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~   66 (242)
                      |.++.|.|||.+.  +.+.+..            .+.|++|+.+.|+|+++|    +++|.++..+|...+|.||.++ |
T Consensus       200 S~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG  275 (467)
T KOG1358|consen  200 STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFG  275 (467)
T ss_pred             heeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccc
Confidence            5678999999999  4443322            678999999999999998    8999999999999999999994 3


Q ss_pred             -cCccCcccccccCCCC---CCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCC--CHHHHHHHHHHHHHH
Q psy6548          67 -LGRTGKLLAIHYEDVR---PDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG--NPLACKLAMTALDVI  138 (242)
Q Consensus        67 -~~~~g~~~~~~~~~~~---~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~a~a~l~~~  138 (242)
                       +|.+|.+ ...++++.   .|+++.|  -+++.   ..|++.|+.-+.++-+-...++.|+.  +|....+|..++..+
T Consensus       276 ~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~  351 (467)
T KOG1358|consen  276 VLGKTGRG-VTEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIE  351 (467)
T ss_pred             cccccCcc-ccccCCCCccceeeeeecccccccc---cCceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHH
Confidence             5677765 44777774   3566643  45652   23556665443333222235556654  455555666677666


Q ss_pred             Hh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceeccC-----
Q psy6548         139 LE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPI-----  205 (242)
Q Consensus       139 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~-----  205 (242)
                      +. +++.+.++.....+...| +... .+.......++++-+.+.+..       ...+++++.++.+|+.+...     
T Consensus       352 ~~~p~~~~~L~~k~~~~H~~l-~~~s-~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~  429 (467)
T KOG1358|consen  352 EWNPEIVQPLRAKVAKFHAAL-SSNS-GFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEK  429 (467)
T ss_pred             hhCcchhhhhhccccccchhh-hcCC-ceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhh
Confidence            54 567777888777777777 4422 112222334566666665522       44678889988888888532     


Q ss_pred             -----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 -----SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 -----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                           -+..+|++++..+++||++++...|+++...+
T Consensus       430 ~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  430 LERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV  466 (467)
T ss_pred             cccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence                 25689999999999999999999999887654

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.70  E-value=1.5e-15  Score=130.72  Aligned_cols=213  Identities=15%  Similarity=0.180  Sum_probs=133.3

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+.+++++++++.+.  +.|...+    +++|.++|++||+++|+|++|. |+...|.. . ...+ ..|+++
T Consensus       153 d~~~l~~~i~~~~~k~v~~~~~--~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~-~~~~-~~di~~  223 (416)
T PRK00011        153 DYDEVEKLALEHKPKLIIAGAS--AYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-P-SPVP-HADVVT  223 (416)
T ss_pred             CHHHHHHHHHhcCCCEEEECCC--cCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc-C-CCCC-CCcEEE
Confidence            4444  3344457777777532  3343333    8999999999999999999984 32111210 1 1112 346655


Q ss_pred             --eeccccCCccchheeEeC-hhhhhccCCCCCCCCCCCC-HHHHHHHHHH-HHHHHh--ccHHHHHHHHHHHHHHHHHh
Q psy6548          88 --LGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGN-PLACKLAMTA-LDVILE--ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~~a~a~-l~~~~~--~~~~~~~~~~~~~l~~~l~~  160 (242)
                        ++|+++ | .+.|+++++ +++++.++.....+.++.+ ...+++...+ .+.+..  +++.++++++++++++.| +
T Consensus       224 ~S~~K~l~-g-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L-~  300 (416)
T PRK00011        224 TTTHKTLR-G-PRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL-A  300 (416)
T ss_pred             ecCCcCCC-C-CCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-H
Confidence              779995 4 678899885 6787777643322222222 2233332333 333322  446788889999999999 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C------CCCEEEEecc----CcCCHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I------SNNIIRLSPA----LNITEQELREG  226 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~------~~~~lR~~~~----~~~t~e~i~~~  226 (242)
                      .++-.+.. ....++++++.+++...+..++.+.|.++||.+..    .      .++.+|++..    ..++++|++++
T Consensus       301 ~~g~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l  379 (416)
T PRK00011        301 ERGFRVVS-GGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI  379 (416)
T ss_pred             hCCCeeee-cCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence            65421111 11234778888764323567899999999999973    1      2456999642    25689999999


Q ss_pred             HHHHHHHHHH
Q psy6548         227 LDIIINTINT  236 (242)
Q Consensus       227 ~~~l~~~l~~  236 (242)
                      ++.|+++++.
T Consensus       380 ~~~l~~~~~~  389 (416)
T PRK00011        380 AELIADVLDN  389 (416)
T ss_pred             HHHHHHHHhc
Confidence            9999988765

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.70  E-value=6.8e-16  Score=130.40  Aligned_cols=203  Identities=14%  Similarity=0.145  Sum_probs=127.5

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~   97 (242)
                      +++++++++++++++|...+    +++|.++|++||+++|+|++|. ++..  ++....++  .|+++  ++|+++++ .
T Consensus       138 ~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~  207 (361)
T cd06452         138 KPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS-A  207 (361)
T ss_pred             CCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC-C
Confidence            47889999999999996654    8999999999999999999996 2211  12222233  35555  77999977 7


Q ss_pred             chheeEeChhhhhccCCCCCCC------CC--CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCC-CCC
Q psy6548          98 PISAVLADDEVMGTLVPGTHGS------TY--GGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSP-DIV  167 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~------~~--~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~~~  167 (242)
                      ++|++++++++++.+.......      .+  +.+...+.++.++++.+.. -....+..++.+++++.| +.++. ...
T Consensus       208 ~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L-~~l~g~~v~  286 (361)
T cd06452         208 PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAEL-EKIEGIKQL  286 (361)
T ss_pred             CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEE
Confidence            8999999998888876532110      01  1112233344455554322 112222334457788888 66631 111


Q ss_pred             CeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ........++.++.+.-       .....++.++|.++||.+... ..+.+|++. ..+++|+++.+++.|+++.
T Consensus       287 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         287 GEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             CCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence            11123445566655421       012346999999999997433 345788875 3369999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.69  E-value=3.5e-16  Score=132.40  Aligned_cols=214  Identities=14%  Similarity=0.117  Sum_probs=138.7

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++++|+++ +...++++++|++|+++|++|.+.+    +++|+++|++||+++|+|++|.... ..     ......
T Consensus       107 ~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~~-~~-----~~~~~g  176 (369)
T cd00614         107 VTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATPY-LQ-----RPLELG  176 (369)
T ss_pred             EEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcchh-cC-----ChhhhC
Confidence            44578888888 5544558999999999999997776    9999999999999999999985211 11     112334


Q ss_pred             CCEEE--eeccccC-CccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|.++| |-.++|++++++ ++++.++..........++..+..+...++.+  +...++..+++.++.+.|
T Consensus       177 ~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L  254 (369)
T cd00614         177 ADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFL  254 (369)
T ss_pred             CcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHH
Confidence            57775  7899984 215688999876 77777765322223345666655554444433  234567778888899999


Q ss_pred             HhhcCCC----CC---C---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548         159 RSRLSPD----IV---P---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-------  205 (242)
Q Consensus       159 ~~~l~~~----~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-------  205 (242)
                       +..+..    .+   .         ...+.|.++.|.+......+..|.+.|.--.+.++          |.       
T Consensus       255 -~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~  333 (369)
T cd00614         255 -EKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQL  333 (369)
T ss_pred             -HcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccC
Confidence             665521    01   0         11345788889886432455666666642221111          10       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                .++.+|+++.+    |+.+.+++.|++++
T Consensus       334 ~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         334 PPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             CHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence                      24689999443    67788888887765

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02651 cysteine desulfurase

Probab=99.68  E-value=1.9e-15  Score=127.80  Aligned_cols=198  Identities=17%  Similarity=0.209  Sum_probs=135.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+++++++++..+++++|.+.|    +++|.++|++||+++++|.+|+ +|..  ++.++  ....|++++|
T Consensus       127 d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~~D~~~~s  197 (364)
T PLN02651        127 DLDELAAAIRPDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--PVDVD--DLGVDLMSIS  197 (364)
T ss_pred             CHHHHHHhcCCCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--ccCcc--cCCCCEEEec
Confidence            4555 4444567999999999999998776    9999999999999999999996 2211  22223  3346888865


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |+ +|+ .++|+++.+++..+.+.+...++       ..+.+..++.+..++++.+..  +.+.++.+++.+++++.|
T Consensus       198 ~hK~-~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l  275 (364)
T PLN02651        198 GHKI-YGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGL  275 (364)
T ss_pred             hhhh-CCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              95 555 67899988888777776543221       123455666666777887754  345678888888888888


Q ss_pred             Hhh-cCC-CCCC--eEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEE
Q psy6548         159 RSR-LSP-DIVP--VVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNII  210 (242)
Q Consensus       159 ~~~-l~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~l  210 (242)
                       ++ ++. .+..  ... ....++.|.++.  .+.+++.++|.+  |.++.+.                       .+.+
T Consensus       276 -~~~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~v  350 (364)
T PLN02651        276 -RAKLGGVRVNGPRDPEKRYPGTLNLSFAY--VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSL  350 (364)
T ss_pred             -HhhCCCEEEECCCCcccCcCCEEEEEeCC--CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceE
Confidence             43 332 1111  111 123466677764  467888888854  7774321                       3689


Q ss_pred             EEeccCcCCHHHHH
Q psy6548         211 RLSPALNITEQELR  224 (242)
Q Consensus       211 R~~~~~~~t~e~i~  224 (242)
                      |++++.++|++|||
T Consensus       351 R~S~~~~~t~~did  364 (364)
T PLN02651        351 RLGVGRFTTEEEVD  364 (364)
T ss_pred             EEEcCCCCCHHHcC
Confidence            99999999999975

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.67  E-value=1e-14  Score=123.86  Aligned_cols=203  Identities=11%  Similarity=-0.003  Sum_probs=139.4

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCccch
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPI   99 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~~~   99 (242)
                      ++.|.+..+.+.+|.+.|    +++|++  ++||+++++|.+++ +|.  .++.++  .  .|++++|  |+++++ .++
T Consensus       137 ~~~V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~--~pidv~--~--iD~~~~s~~K~l~~P-~G~  202 (378)
T PRK03080        137 DRDVVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFA--LPLDWS--K--LDVYTFSWQKVLGGE-GGH  202 (378)
T ss_pred             CCCEEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-ccc--CCCCHH--H--CcEEEEehhhhCCCC-Cce
Confidence            455888889999998887    778878  78999999999986 321  222222  2  4888866  999977 789


Q ss_pred             heeEeChhhhhccCCCCC----------------------CCCCC-CCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHH
Q psy6548         100 SAVLADDEVMGTLVPGTH----------------------GSTYG-GNPLACKLAMTALDVILEE-N---MIENAYKMGE  152 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~----------------------~~~~~-~~~~~~~~a~a~l~~~~~~-~---~~~~~~~~~~  152 (242)
                      |+++.+++.++.+.+...                      .++.. .+..+..+..++++.+.+. +   +.++.+++.+
T Consensus       203 g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~  282 (378)
T PRK03080        203 GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANAS  282 (378)
T ss_pred             EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998877765311                      11222 2233455556788877653 3   4567777888


Q ss_pred             HHHHHHHhhcCC-CCCC-eEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHH
Q psy6548         153 IFRSELRSRLSP-DIVP-VVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELR  224 (242)
Q Consensus       153 ~l~~~l~~~l~~-~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~  224 (242)
                      ++++.| ++++. .... ... ..+.++.+.+++.. ....++...|.++|+++..++    .+.+|++++.+++++|++
T Consensus       283 ~l~~~l-~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~  361 (378)
T PRK03080        283 VLYDWA-EKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVE  361 (378)
T ss_pred             HHHHHH-HhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHH
Confidence            888888 66652 1211 111 22346677766510 123346777778888886532    478999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy6548         225 EGLDIIINTINTMAA  239 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~  239 (242)
                      ++++.|++++++++.
T Consensus       362 ~l~~al~~~~~~~~~  376 (378)
T PRK03080        362 ALTPWLDWAFERLKA  376 (378)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998887643

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=1.2e-14  Score=126.05  Aligned_cols=216  Identities=12%  Similarity=0.045  Sum_probs=141.4

Q ss_pred             ccCCC------Chhh--hcCCCCCEEEEEE-cccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCcc-Cccc
Q psy6548           6 PVKSK------QVPA--KLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRT-GKLL   74 (242)
Q Consensus         6 ~~~~~------d~~~--~~~~~~~~~~i~~-e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~-g~~~   74 (242)
                      .|+||      |+++  +.+.+.+++.|++ ++++++.+   +    +++|+++|++||+++++|++| .|+... +...
T Consensus       160 ~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~---D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~  232 (475)
T PLN03226        160 PYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDW---D----YARMRKIADKVGALLMCDMAHISGLVAAQEAAS  232 (475)
T ss_pred             eeeecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCcc---C----HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC
Confidence            56778      8888  4455555666655 55554433   2    789999999999999999999 443222 1111


Q ss_pred             ccccCCCCCCEEE--eeccccCCccchheeEeChhhh-----------hc---cCCC-CCCCCCCCCHHHHHHHHHHHHH
Q psy6548          75 AIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVM-----------GT---LVPG-THGSTYGGNPLACKLAMTALDV  137 (242)
Q Consensus        75 ~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~-----------~~---l~~~-~~~~~~~~~~~~~~~a~a~l~~  137 (242)
                      .   .+ ..|+++  ++|+|.|+ .+ |+++++++.+           +.   +... ......+.++...++..++++.
T Consensus       233 p---~~-~~Div~~t~hK~L~GP-~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~  306 (475)
T PLN03226        233 P---FE-YCDVVTTTTHKSLRGP-RG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQ  306 (475)
T ss_pred             C---CC-CCeEEEecCcccccCC-Cc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHH
Confidence            1   11 367766  67999765 43 7787776543           11   2211 1112223345555556667887


Q ss_pred             HHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------
Q psy6548         138 ILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------  205 (242)
Q Consensus       138 ~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------  205 (242)
                      +.+.   .+.+++.++.+++++.| ++.+-.+.... ....++++++...+.+..++.+.|.+.||.+..+         
T Consensus       307 i~~~~~~~~~~~~~~na~~L~~~L-~~~G~~l~~~~-t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~  384 (475)
T PLN03226        307 AMTPEFKAYQKQVKANAAALANRL-MSKGYKLVTGG-TDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSAL  384 (475)
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHH-HhCCCEEEcCC-CCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccC
Confidence            7653   36788899999999999 66542222111 1246777777443356778889999999999643         


Q ss_pred             CCCEEEE----eccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 SNNIIRL----SPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ~~~~lR~----~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++.+|+    ..+..++++|++++.+.|.++++.
T Consensus       385 ~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        385 VPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             CCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            3567998    456788999999999999999874

>KOG0633|consensus

Probab=99.67  E-value=2e-15  Score=116.75  Aligned_cols=207  Identities=12%  Similarity=0.084  Sum_probs=133.4

Q ss_pred             hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eec
Q psy6548          15 KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGK   90 (242)
Q Consensus        15 ~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK   90 (242)
                      +.+. +..++++++.++.|++|.+.- .+.+.++.+.-.  |.++++||+|-+|...+  ..+.....-|++++   +||
T Consensus       153 evl~~ds~iK~~F~tSPgNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidFsg~~--S~~~lV~kYpNLivlqTlSK  227 (375)
T KOG0633|consen  153 EVLELDSKIKCIFLTSPGNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDFSGVE--SRMKLVKKYPNLIVLQTLSK  227 (375)
T ss_pred             HHHhccccceEEEEcCCCCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEeecccc--ccchHhHhCCceeehhhhhh
Confidence            3344 458999999999999997664 455666665533  78999999998873322  22222233466666   999


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE-ENMIENAYKMGEIFRSELRSRLSPDI  166 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~  166 (242)
                      +|| +| .|+|+...+..+++.+......++  .+..+..+|++|+..-  .. +..++.+.+.+-++...| ++++...
T Consensus       228 sfGLAG-iRvG~~~~~~~ia~iln~~KaPYN--iS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keL-t~v~~~~  303 (375)
T KOG0633|consen  228 SFGLAG-IRVGYGAFPLSIAEILNRAKAPYN--ISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKEL-TEVPFLN  303 (375)
T ss_pred             hcCcce-eEeecccccHHHHHHHHhccCCcc--ccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHh-hcCcccc
Confidence            999 99 999999999998888877545443  4445555556555421  11 234444555555566666 5554211


Q ss_pred             CCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .........|+.+++.+..  .......+.+.+.|++++..     -.+++|++   ..|+|+..-+++.|++.
T Consensus       304 ~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  304 DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMKCLKQF  374 (375)
T ss_pred             CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHHHHHHhh
Confidence            1112234567777766431  22333455556789999754     36899999   55889999999988764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.66  E-value=3e-14  Score=123.40  Aligned_cols=212  Identities=14%  Similarity=0.109  Sum_probs=137.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----cCcc---C-cccccc----cCCCCCCEEE
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRT---G-KLLAIH----YEDVRPDIVI   87 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~~~~---g-~~~~~~----~~~~~~~~~~   87 (242)
                      +++++|+++.++|++|+.+.+.+.+++|+++|++||+++|+|++|..    |...   + ......    ..+-..|..+
T Consensus       176 ~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~  255 (460)
T PRK13238        176 ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLT  255 (460)
T ss_pred             CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEE
Confidence            47999999999999887788889999999999999999999998842    1110   1 010100    0011256666


Q ss_pred             ee--ccccCCccchheeEeC-hhhhhccCCCC---CCC-CCCCCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          88 LG--KALSGGLYPISAVLAD-DEVMGTLVPGT---HGS-TYGGNPLA-CKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        88 ~s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~---~~~-~~~~~~~~-~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      +|  |...++ . .|+++++ +++++.+++..   ++. ++++.+.. +.+...+++...++++.....+.++++.+.| 
T Consensus       256 ~Sg~K~g~~~-~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L-  332 (460)
T PRK13238        256 MSAKKDAMVN-I-GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGL-  332 (460)
T ss_pred             EecccCCCCc-c-eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHH-
Confidence            55  433333 2 3556666 57888877642   233 56665544 4443334554434555666666788899999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHH-HCCceeccCC-----------------CCEEEEec
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMK-DAGLVTKPIS-----------------NNIIRLSP  214 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-~~gi~~~~~~-----------------~~~lR~~~  214 (242)
                      ++.+  +....+..|+++++++..-       +....+++..|. +.||.+.|.+                 ...+|++.
T Consensus       333 ~~~G--~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~  410 (460)
T PRK13238        333 EEAG--VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAI  410 (460)
T ss_pred             HHCC--CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEec
Confidence            6654  3333355678888877542       123467888877 5699887642                 47899985


Q ss_pred             cC-cCCHHHHHHHHHHHHHHHHH
Q psy6548         215 AL-NITEQELREGLDIIINTINT  236 (242)
Q Consensus       215 ~~-~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +- ..|.++++.+.++|+++.+.
T Consensus       411 ~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        411 PRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHh
Confidence            42 44999999999999887754

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.66  E-value=2e-15  Score=126.62  Aligned_cols=183  Identities=16%  Similarity=0.093  Sum_probs=121.3

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~   97 (242)
                      +++++++..+++++|.+.+    +++|+++|++||+++++|++|.++............+. ..|.++  ++|+++++ .
T Consensus       148 ~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~  222 (345)
T cd06450         148 NPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-L  222 (345)
T ss_pred             CcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-c
Confidence            6778888888888897654    99999999999999999999975321111000000111 346544  67998887 7


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG  174 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  174 (242)
                      ++|+++.+                      ..+.+++++.+..   ++..++..++++++++.| +.++.... ..+..+
T Consensus       223 g~g~~~~~----------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~~-~~~~~~  278 (345)
T cd06450         223 GCSAVLVR----------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELI-RADPGFEL-LGEPNL  278 (345)
T ss_pred             chHHHHHH----------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hcCCCeEE-ecCCce
Confidence            88887544                      2223344444433   345677778888888888 65542111 112234


Q ss_pred             eeEEEEecCC---chhHHHHHHHHHHCCceeccC----CCCEEEEeccCcC-CHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKS---ILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNI-TEQELREGLDIIIN  232 (242)
Q Consensus       175 ~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~-t~e~i~~~~~~l~~  232 (242)
                      .++.+.++..   ..+..++.+.|.++|+++.+.    .+..+|++++..+ |++|++++++.|++
T Consensus       279 ~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         279 SLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             eEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            5666766652   146778999999997655432    3578999998765 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN02368 alanine transaminase

Probab=99.65  E-value=5.5e-16  Score=132.37  Aligned_cols=159  Identities=9%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-cc-cc-c---cCC----CCCCEEE---
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LL-AI-H---YED----VRPDIVI---   87 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~-~~-~---~~~----~~~~~~~---   87 (242)
                      +++++++..++|++|. +.+++.+++|+++|++||++||+||+|.++...+. .+ +. .   ..+    ....+++   
T Consensus       210 ~~k~l~l~nP~NPTG~-v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~S  288 (407)
T PLN02368        210 TVRAMVIINPGNPTGQ-CLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHT  288 (407)
T ss_pred             CeEEEEEECCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEec
Confidence            6888888888999995 55788999999999999999999999988644332 11 11 1   111    1123443   


Q ss_pred             eeccc-c-CCccchheeE---eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-----------Hh-ccHHHHHHHH
Q psy6548          88 LGKAL-S-GGLYPISAVL---ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKM  150 (242)
Q Consensus        88 ~sK~~-~-~g~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-----------~~-~~~~~~~~~~  150 (242)
                      |||+| + +| +|+||++   +++++++.+.... ..+++.+.+++.++.++++..           +. ..+.+.++++
T Consensus       289 fSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  366 (407)
T PLN02368        289 VSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRR  366 (407)
T ss_pred             CCcccccCCc-cceEEEEEeCCCHHHHHHHHHHh-cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            89998 5 89 9999998   4788888877642 335667888888888777521           11 2346777888


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS  184 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (242)
                      ++.+.+.| +.++. +....+..++++|.+++-+
T Consensus       367 r~~~~~~L-~~~~g-~~~~~P~Gafy~~~~i~lp  398 (407)
T PLN02368        367 ARMMTDGF-NSCKN-VVCNFTEGAMYSFPQIKLP  398 (407)
T ss_pred             HHHHHHHH-hCCCC-eEeCCCCeeeEeccCCCCC
Confidence            88888888 66532 2222344577778655554

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.65  E-value=3e-14  Score=123.67  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=131.7

Q ss_pred             ccccCCC----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE--eccccccCccCccccc
Q psy6548           4 QFPVKSK----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~--De~~~~~~~~g~~~~~   76 (242)
                      +..+|.+    |+++ +...++++++|+++.+ +++|.+.+    +++|.++|++||+++++  |.+..++  ..   ..
T Consensus       182 ~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~---~~  251 (447)
T PRK00451        182 VVEVPYEDGVTDLEALEAAVDDDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LK---PP  251 (447)
T ss_pred             EEEecCCCCCCCHHHHHHhcCCCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CC---Cc
Confidence            3445554    5565 5555678999999887 77887755    99999999999999988  5443221  11   11


Q ss_pred             ccCCCCCCEEEe-----ecccc-CCccchheeEeChhhhhccCCC--------------------------CCCCCC--C
Q psy6548          77 HYEDVRPDIVIL-----GKALS-GGLYPISAVLADDEVMGTLVPG--------------------------THGSTY--G  122 (242)
Q Consensus        77 ~~~~~~~~~~~~-----sK~~~-~g~~~~g~~~~~~~~~~~l~~~--------------------------~~~~~~--~  122 (242)
                      .  ....|++++     ||.+. +| +++|++..++++++.+.+.                          ...++.  .
T Consensus       252 ~--~~~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (447)
T PRK00451        252 G--EYGADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNIC  328 (447)
T ss_pred             c--cCCCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccccccc
Confidence            1  234577763     45555 67 7899999988888775321                          001111  1


Q ss_pred             CCHHHH-HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeecee--EEEEecCCchhHHHHHHHHH
Q psy6548         123 GNPLAC-KLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSILEVYDVCIKMK  196 (242)
Q Consensus       123 ~~~~~~-~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~  196 (242)
                      .+...+ .++..+++.+.+   ++..++++++++++++.| +.++.....   ....+  +.+.++   .+..++.++|.
T Consensus       329 ~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~~g~~~~---~~~~~~~~~v~~~---~~~~~~~~~L~  401 (447)
T PRK00451        329 TNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERL-AEIGGVELF---DGPFFNEFVVRLP---KPAEEVNEALL  401 (447)
T ss_pred             ccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-hhcCCEEec---CCCeEEEEEEecC---CCHHHHHHHHH
Confidence            111111 222223443322   345678888888899988 665421111   11222  224432   24688999999


Q ss_pred             HCCceecc-------CCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         197 DAGLVTKP-------ISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       197 ~~gi~~~~-------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++|++...       ...+.+|++++..+|+++++++++.|++++
T Consensus       402 ~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        402 EKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             hcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            99887531       123689999998999999999999998764

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.65  E-value=8.6e-14  Score=115.76  Aligned_cols=223  Identities=20%  Similarity=0.257  Sum_probs=158.4

Q ss_pred             ccccCCCC---hhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           4 QFPVKSKQ---VPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         4 ~~~~~~~d---~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      ++.++|+.   +++  +.+. ++++.++.+...-.++|...|    +++|+++|++||+++|+|.+-+ +  .|..+.++
T Consensus       108 ~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~--Gg~~~~vd  180 (383)
T COG0075         108 VLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP----LKEIAKAAKEHGALLIVDAVSS-L--GGEPLKVD  180 (383)
T ss_pred             EEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc----HHHHHHHHHHcCCEEEEEeccc-C--CCcccchh
Confidence            34555643   333  4454 567889999888888897665    9999999999999999999876 3  33445566


Q ss_pred             cCCCCCCEEEe--eccccCCccchheeEeChhhhhccCCCC------------------CCCCCCCCHHHHHHHHHHHHH
Q psy6548          78 YEDVRPDIVIL--GKALSGGLYPISAVLADDEVMGTLVPGT------------------HGSTYGGNPLACKLAMTALDV  137 (242)
Q Consensus        78 ~~~~~~~~~~~--sK~~~~g~~~~g~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~a~a~l~~  137 (242)
                      .|++  |+++.  -|+++++ .++|.+..+++.++.+....                  ..+.++.+.....+..++++.
T Consensus       181 ~wgi--Dv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~  257 (383)
T COG0075         181 EWGI--DVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDL  257 (383)
T ss_pred             hcCc--cEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHH
Confidence            7766  66663  3999976 67899999998888876431                  123334444566666778888


Q ss_pred             HHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCC
Q psy6548         138 ILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNN  208 (242)
Q Consensus       138 ~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~  208 (242)
                      +..+   +..++.++++++++..+ ++++-...... ........+..+.. .+...+...++++ |+.+.++    .+.
T Consensus       258 i~~EGle~r~~RH~~~~~a~r~~~-~alGl~~~~~~~~~s~tvta~~~P~g-~~~~~~~~~~~~~~g~~i~gg~~~l~gk  335 (383)
T COG0075         258 ILEEGLEARIARHRRLAEALRAGL-EALGLELFADPERRSPTVTAIKVPEG-VDDKKVRRALLKEYGVEIAGGQGPLKGK  335 (383)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHH-HHcCCccccCcccCCCceEEEECCCC-CCcHHHHHHHHHhCCEEecccccccCcc
Confidence            8775   45677788999999999 88875333222 22334555666665 4443444455555 8888776    457


Q ss_pred             EEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         209 IIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+||..-...+..++...+++|+.++.++.
T Consensus       336 ifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         336 IFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             EEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence            899987668899999999999999998763

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.64  E-value=5.7e-15  Score=125.64  Aligned_cols=211  Identities=15%  Similarity=0.120  Sum_probs=137.1

Q ss_pred             CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548           8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus         8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +..|+++ +...++++++|++|.++|++|.+.+    +++|.++|+++|+++|+|++|+.. ..+.+.     ....|++
T Consensus       132 ~~~d~~~l~~~i~~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~-~~~~pl-----~~g~Div  201 (386)
T PRK06767        132 DMETEADIENKIRPNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSP-YLQRPL-----ELGCDAV  201 (386)
T ss_pred             CCCCHHHHHHhhCcCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch-----hcCCcEE
Confidence            3345666 4444568999999999999997776    899999999999999999998521 111111     1234666


Q ss_pred             E--eeccccC-Cccc-hheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 I--LGKALSG-GLYP-ISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 ~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +  ++|.++| | .+ .|+++++++.++.+...... .....+++.+..+...++.+  +...++.++++..+.+.| ++
T Consensus       202 ~~S~sK~l~g~g-~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L-~~  277 (386)
T PRK06767        202 VHSATKYIGGHG-DVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFL-KN  277 (386)
T ss_pred             EecCcceecCCC-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHH-Hc
Confidence            6  6799985 5 55 48888888776654321111 11123455444444444433  234577788899999999 66


Q ss_pred             cCCCC-CC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------------------------
Q psy6548         162 LSPDI-VP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------------------------  205 (242)
Q Consensus       162 l~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------------------------  205 (242)
                      .+... ..         ...+.|.++.|++.....++..|.+.|...++.++-+                          
T Consensus       278 ~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g  357 (386)
T PRK06767        278 HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMG  357 (386)
T ss_pred             CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcC
Confidence            65311 11         1123467888888654356788999998776666422                          


Q ss_pred             -CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 -SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 -~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                       ..+.+|++    ...|+.+.+++-|+++++.
T Consensus       358 i~~~l~R~s----vGlE~~~dl~~dl~~al~~  385 (386)
T PRK06767        358 IYDNLIRLS----VGLESWEDIVSDLEQALKK  385 (386)
T ss_pred             CCCCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence             24689999    4556778888888877764

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.64  E-value=6.8e-15  Score=125.64  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=139.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      +..++.+|+++ +...++++++|++|.++|++|.+.+    +++|.++|++|  |+++|+||+|... ..+.+     .+
T Consensus       131 v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~-~~~~~-----l~  200 (400)
T PRK06234        131 VTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTP-YIQRP-----LQ  200 (400)
T ss_pred             EEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCch-hcCCc-----hh
Confidence            34567778888 5555668999999999999997765    99999999997  9999999999632 11111     12


Q ss_pred             CCCCEEE--eeccccC-Cccc-hheeEeChhhhhccCCCC-C-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSG-GLYP-ISAVLADDEVMGTLVPGT-H-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  154 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l  154 (242)
                      ...|+++  ++|.+++ | .+ .||+++++++++.++... . ......++..+..++..++.+  +...++.+++..++
T Consensus       201 ~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl--~~r~~~~~~na~~~  277 (400)
T PRK06234        201 LGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL--QIRMEKHCKNAMKV  277 (400)
T ss_pred             hCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHH
Confidence            2456666  7799984 5 55 488999988888775321 1 122345566555555444433  23456667788888


Q ss_pred             HHHHHhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------------
Q psy6548         155 RSELRSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------------  205 (242)
Q Consensus       155 ~~~l~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------  205 (242)
                      .+.| +..+.       +....         ..+.|.++.|++.........|.+.|.--++.++-+             
T Consensus       278 a~~L-~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~  356 (400)
T PRK06234        278 AKFL-ESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMT  356 (400)
T ss_pred             HHHH-HcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCC
Confidence            8888 54432       11111         123577888998754244567777776544333211             


Q ss_pred             --------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 --------------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 --------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                    .++.+|+++    ..|+.+.+++.|+++++.+
T Consensus       357 ~~~~~~~~~~~~gi~~~l~R~sv----GlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        357 HSPYTAEERKEAGISDGLVRLSV----GLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             CCCCCHHHHHhcCCCCCeEEEEe----CCCCHHHHHHHHHHHHHHH
Confidence                          246899994    4456677777777777653

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.64  E-value=1.3e-14  Score=123.74  Aligned_cols=216  Identities=13%  Similarity=0.132  Sum_probs=138.4

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++..|++. +...++++++|++|.++|++|.+++    +++|+++|++||+++|+|++|..+.. ..+     .....
T Consensus       132 ~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~-~~~-----l~~~~  201 (398)
T PRK08249        132 TLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPIN-QNP-----LALGA  201 (398)
T ss_pred             EEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcccc-CCc-----hhhCC
Confidence            3456667777 5545568999999999999997776    89999999999999999999963211 111     12345


Q ss_pred             CEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      |+++  ++|.++| | -++ |++++++++++.+...........++..+..+...++.+..  ..++.++++..+.+.| 
T Consensus       202 Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L-  277 (398)
T PRK08249        202 DLVIHSATKFLSGHA-DALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKL--RVRQQQESAMALAKYL-  277 (398)
T ss_pred             CEEeccCceecCCCC-CceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHHHHHHHHHH-
Confidence            6666  7799985 3 343 66778888877766433323345566666666666665532  3466678888888888 


Q ss_pred             hhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC--------
Q psy6548         160 SRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI--------  205 (242)
Q Consensus       160 ~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~--------  205 (242)
                      +..+.       +....         ..+.|.++.|++..+...+..|.+.|.-  .+.-+        .|.        
T Consensus       278 ~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~  357 (398)
T PRK08249        278 QTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENT  357 (398)
T ss_pred             HcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCcccccccCC
Confidence            55432       11111         1245778889886542345566666632  22211        110        


Q ss_pred             ---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                               .++.+|++    ...|+.+.+++.|+++++.+.
T Consensus       358 ~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~~  395 (398)
T PRK08249        358 LEERAALGIPEGLVRIS----VGIEDTEDLIADLEQAFAHLE  395 (398)
T ss_pred             HHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHHhh
Confidence                     24689999    445677777777777777643

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.63  E-value=4.5e-15  Score=125.48  Aligned_cols=213  Identities=15%  Similarity=0.156  Sum_probs=132.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~   81 (242)
                      +..++..|++. +...++++++|++|.++|+++...    .+++|+++|++||+++|+||+|. ++  ...+     ...
T Consensus       118 v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~----dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~~~  186 (366)
T PRK08247        118 FVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQET----DIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----LEE  186 (366)
T ss_pred             EEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----hhc
Confidence            34566677877 555556899999999999876443    49999999999999999999984 22  1111     112


Q ss_pred             CCCEEE--eeccccC--CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSG--GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~--~sK~~~~--g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|+++  +||.++|  + ...|+++++ +++++.+...........+++.+..+...++.+.  ...+..+++++.+.+
T Consensus       187 g~di~i~S~sK~~~g~~d-~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~  263 (366)
T PRK08247        187 GADIVIHSATKYLGGHND-VLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAA  263 (366)
T ss_pred             CCcEEEeecceeccCCCc-eeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHH
Confidence            345655  7899984  4 467888876 5666665533222233455666555555555332  234566888899999


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH----------HCCceeccC-----------------CCCE
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK----------DAGLVTKPI-----------------SNNI  209 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~gi~~~~~-----------------~~~~  209 (242)
                      .| +..+.......++.|.++.+.+... .....|.+.+.          .+++++.|.                 ..+.
T Consensus       264 ~L-~~~p~v~~v~~P~~gg~~sf~~~~~-~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~  341 (366)
T PRK08247        264 FL-NEQPGVTDVLYPGRGGMLSFRLQDE-EWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRL  341 (366)
T ss_pred             HH-HhCCCeeEEecCCcCcEEEEEECCH-HHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCe
Confidence            99 6654311122344566777777542 33344444332          123333332                 2468


Q ss_pred             EEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         210 IRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       210 lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +|++    ...|+.+.+++.|+++++.
T Consensus       342 ~R~s----vGlE~~~dl~~dl~~al~~  364 (366)
T PRK08247        342 LRFS----VGIENVEDLIADLKQAFKQ  364 (366)
T ss_pred             EEEE----eccCCHHHHHHHHHHHHhh
Confidence            9999    4556777888888877765

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.63  E-value=9.4e-15  Score=124.65  Aligned_cols=215  Identities=15%  Similarity=0.154  Sum_probs=135.2

Q ss_pred             ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      .++..|+++ +...++++++|++|+++|++|.+.+    +++|.++|+++|+++|+|++|+... ...+     .....|
T Consensus       134 ~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~-~~~~-----~~~gaD  203 (398)
T PRK07504        134 LVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPL-FQKP-----LELGAH  203 (398)
T ss_pred             EECCCCHHHHHHhcCcCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccc-cCCc-----hhhCCC
Confidence            344566777 5555678999999999999997776    9999999999999999999996321 1111     122457


Q ss_pred             EEE--eecccc-CCccchh-eeEeChhhhhc-cCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          85 IVI--LGKALS-GGLYPIS-AVLADDEVMGT-LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        85 ~~~--~sK~~~-~g~~~~g-~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      +++  ++|+++ .| .++| +++++++.+.. ++..........+++.++.++..++.+..  ..++.+++...+.+.| 
T Consensus       204 ivv~S~sK~l~g~g-~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L-  279 (398)
T PRK07504        204 IVVYSATKHIDGQG-RCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFL-  279 (398)
T ss_pred             EEEeeccccccCCc-cceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHH-
Confidence            666  679998 46 7775 56676665532 32111111224566666666666665533  4556668888888888 


Q ss_pred             hhcCC-------CCCCeE---------eeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC--------
Q psy6548         160 SRLSP-------DIVPVV---------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI--------  205 (242)
Q Consensus       160 ~~l~~-------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~--------  205 (242)
                      +..+.       +....+         .+.|.++.|++......+..|.+.|.--.+.++          |.        
T Consensus       280 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~  359 (398)
T PRK07504        280 AGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLS  359 (398)
T ss_pred             HcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCC
Confidence            55442       111111         234778999996432445566666642222221          10        


Q ss_pred             ---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                               ..+.+|++    ...|+.+.+++.|+++++.+.
T Consensus       360 ~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        360 PEARAELGISEGFLRLS----AGLEDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             HHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence                     24689999    344567777888877777543

>PRK14012 cysteine desulfurase; Provisional

Probab=99.62  E-value=1.1e-13  Score=118.57  Aligned_cols=210  Identities=13%  Similarity=0.175  Sum_probs=130.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+.+++++++..++|++|.+.+    +++|.++|++||+++|+|++|+ ++...  ..  .....+|++++|
T Consensus       133 d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~--~~~~~~D~~~~s  203 (404)
T PRK14012        133 DLEKLEAAMRDDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--ID--LSKLKVDLMSFS  203 (404)
T ss_pred             CHHHHHHhcCCCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cC--cccCCCCEEEEe
Confidence            5555 4444667899999999999997776    8999999999999999999996 22221  11  113457888866


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCCC------C-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST------Y-GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |.++ + .++|+++.+++....+.+...++.      . +.+.....+..++++..+.  ++..++.+++.+++.+.|
T Consensus       204 ~~K~~g-p-~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L  281 (404)
T PRK14012        204 AHKIYG-P-KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGI  281 (404)
T ss_pred             hhhccC-C-CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence              9665 3 357888877665444443222211      1 1233333333345554432  335677777888888888


Q ss_pred             HhhcCCC-CC-CeEee--eceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEE
Q psy6548         159 RSRLSPD-IV-PVVRG--KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIR  211 (242)
Q Consensus       159 ~~~l~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR  211 (242)
                       +.++.. .. .....  ....+++...+    ...+...|.  ++.+..+                       ..+.+|
T Consensus       282 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR  354 (404)
T PRK14012        282 -KDIEEVYLNGDLEQRVPGNLNVSFNYVE----GESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIR  354 (404)
T ss_pred             -hcCCCEEEeCCccccCCCEEEEEEeCcC----HHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEE
Confidence             555421 11 00111  11234444332    245566553  4333211                       136899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         212 LSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ++++...|++|++++++.|+++++.+.
T Consensus       355 ls~~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        355 FSLGRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887753

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.62  E-value=7e-15  Score=124.84  Aligned_cols=211  Identities=14%  Similarity=0.207  Sum_probs=133.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|++. +...++++++|++|+++|++|...+    +++|.++|+++|+++|+|++|.... ...+     ....
T Consensus       121 v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~-~~~p-----l~~g  190 (380)
T TIGR01325       121 VSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPV-LQQP-----LKLG  190 (380)
T ss_pred             EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccc-cCCc-----hhhC
Confidence            34466777777 5544568999999999999997765    9999999999999999999996321 1111     1234


Q ss_pred             CCEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +|+++  ++|+++| | .++ |++++++++++.++..........++..+..++..++.+..  ..++..+++..+.+.|
T Consensus       191 ~Divv~S~sK~l~g~g-~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L  267 (380)
T TIGR01325       191 ADVVVYSATKHIDGQG-RVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWL  267 (380)
T ss_pred             CCEEEeeccceecCCC-CeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHH
Confidence            67776  7799985 4 454 77778888777666432222223345554444444554433  3566777888888888


Q ss_pred             HhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCcee----------ccC-------
Q psy6548         159 RSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT----------KPI-------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~-------  205 (242)
                       +..+.       .....         ..+.|.++.|++.+. ..+..|.+.|.--.+.+          .|.       
T Consensus       268 -~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~-~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~  345 (380)
T TIGR01325       268 -QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADR-AAAWKVLDAVELVSITNNLGDAKSTITHPATTTHGRM  345 (380)
T ss_pred             -HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH-HHHHHHHHcCCcceEcccCCCCCeeeeCCCccCcccC
Confidence             55442       11111         124577899998732 45667777764222111          110       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                .++.+|++    ...|+.+.+++.|+++
T Consensus       346 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~a  379 (380)
T TIGR01325       346 QPEERAAAGIGDGLVRLS----VGLEDVDDLIADLKRA  379 (380)
T ss_pred             CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHhh
Confidence                      24689999    3445667777776654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.62  E-value=7.1e-14  Score=118.01  Aligned_cols=208  Identities=14%  Similarity=0.105  Sum_probs=128.7

Q ss_pred             Chhh-hcCCCCCEEEEE-EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~-~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+++|++++ ++++++++|.+.+    +++|+++|++||+++|+|++|..   ...  ....+  ..|++++
T Consensus       137 d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~~---~~~--~~~~~--g~D~~~~  205 (363)
T TIGR01437       137 SAEQLEAAITEKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAEE---DLQ--KYYRL--GADLVIY  205 (363)
T ss_pred             CHHHHHHhcChhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCCC---chH--HHHHc--CCCEEEE
Confidence            4555 555566777665 5666777886665    88999999999999999999961   111  00112  3577775


Q ss_pred             e--ccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhc
Q psy6548          89 G--KALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        89 s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      |  |+++|  ++.|++++++++++.+++...+.  .+......+++..++++.+..  .+..+...++++.+++.| +++
T Consensus       206 S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L-~~i  282 (363)
T TIGR01437       206 SGAKAIEG--PTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL-NTL  282 (363)
T ss_pred             eCCcccCC--CceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH-hcC
Confidence            4  98876  45899888888877664322211  111112334444456665543  234445556677788888 666


Q ss_pred             CCC-CCCeEee--ec---eeEEEEecCCchhHHHHHHHHHHCC--ceecc--CCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         163 SPD-IVPVVRG--KG---LLNAIVLDKSILEVYDVCIKMKDAG--LVTKP--ISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       163 ~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~--~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.- .......  ..   ..+.++....+.+..++.++|.++|  |.+++  ...+.+|+.+.. .+++|++.++++|++
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~  361 (363)
T TIGR01437       283 KGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIRE  361 (363)
T ss_pred             CCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHH
Confidence            421 1100011  11   1222333212257899999998877  66664  357889999885 579999999999987


Q ss_pred             H
Q psy6548         233 T  233 (242)
Q Consensus       233 ~  233 (242)
                      .
T Consensus       362 ~  362 (363)
T TIGR01437       362 I  362 (363)
T ss_pred             h
Confidence            5

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.61  E-value=9e-14  Score=117.27  Aligned_cols=204  Identities=11%  Similarity=0.157  Sum_probs=138.4

Q ss_pred             CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccC
Q psy6548          17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG   94 (242)
Q Consensus        17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~   94 (242)
                      ..+.++++|++....+.+|...|    +++|   ++++|+++++|.+++ ++  +....++    ..|++++|  |++++
T Consensus       124 ~~~~~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g--~~~idv~----~~D~~~~s~~K~lg~  189 (361)
T TIGR01366       124 QADPGVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AG--GLPVDIA----ETDVYYFAPQKNFAS  189 (361)
T ss_pred             ccCCCCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-cc--CCCCCHH----HCCEEEEEchhhcCC
Confidence            34568999999999999998887    5544   589999999999996 32  1222222    15888876  99984


Q ss_pred             CccchheeEeChhhhhccCCCCC--------------------CCCCCCCHH-HHHHHHHHHHHHHhc-c---HHHHHHH
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTH--------------------GSTYGGNPL-ACKLAMTALDVILEE-N---MIENAYK  149 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~--------------------~~~~~~~~~-~~~~a~a~l~~~~~~-~---~~~~~~~  149 (242)
                      . -+++.++.++++++++.+...                    +.+...+++ ...+..++++.+++. +   ..++.++
T Consensus       190 ~-~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~  268 (361)
T TIGR01366       190 D-GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTAD  268 (361)
T ss_pred             C-CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3 335566778888777653211                    122233333 344556778877653 2   4577778


Q ss_pred             HHHHHHHHHHhhcCC-CCC-CeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHH
Q psy6548         150 MGEIFRSELRSRLSP-DIV-PVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQE  222 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~-~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~  222 (242)
                      +.+++++.+ ++++. ... .... .......+.+++. .+..++.+.|.++||.+.++    +.+.+|+++..++|.+|
T Consensus       269 l~~~l~~~l-~~~~~~~~~~~~~~~~s~~v~~v~~~~g-~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~d  346 (361)
T TIGR01366       269 SSSRLYSWA-QERPYATPFVTDPGKRSQVVGTIDFVDD-IDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDD  346 (361)
T ss_pred             HHHHHHHHH-HhCCCcccCCCChhhcccceEEEECCCc-cCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHH
Confidence            888888888 66652 111 1111 1112233444443 67889999999999999765    34579999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINTM  237 (242)
Q Consensus       223 i~~~~~~l~~~l~~~  237 (242)
                      ++++++.|+++++++
T Consensus       347 i~~l~~al~~~~~~~  361 (361)
T TIGR01366       347 VEALTECVDWVVERL  361 (361)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999988763

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.61  E-value=1.1e-14  Score=125.21  Aligned_cols=202  Identities=14%  Similarity=0.155  Sum_probs=128.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh---hCCEEEEeccccccCccCcccccccCCCCCCEEE--eecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~---~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~   93 (242)
                      .+++++|++|+++||+|.++ +.+.+.++++.|++   +++++|+||+|.+..... +.     ....|+++  +||.++
T Consensus       172 ~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~-pl-----~~g~divv~S~SK~~g  244 (427)
T PRK07049        172 KGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK-PL-----EHGADLSVYSLTKYVG  244 (427)
T ss_pred             CCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCccccccCC-cc-----ccCCCEEEEcCceeec
Confidence            46899999999999999665 44445555555432   799999999985431111 11     12346665  889999


Q ss_pred             --CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC------
Q psy6548          94 --GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD------  165 (242)
Q Consensus        94 --~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------  165 (242)
                        +| +++||+++++++++.+...........+++.+..+...++.+..  ..++..+++..+.+.| +..+..      
T Consensus       245 G~~g-lr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~--R~~~~~~~a~~la~~L-~~~p~V~~v~yp  320 (427)
T PRK07049        245 GHSD-LVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVL--RMERANRNARAVAEFL-RDHPKVEKLHYL  320 (427)
T ss_pred             CCCC-cEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHH--HHHHHHHHHHHHHHHH-HhCCCccEEECC
Confidence              68 89999999988888776533333344667777666666654432  3455577888888888 655421      


Q ss_pred             -C--CC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-----------------C
Q psy6548         166 -I--VP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-----------------S  206 (242)
Q Consensus       166 -~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-----------------~  206 (242)
                       .  ..         ...+.|.++.|++......+..|.+.|.--.+.++          |.                 .
T Consensus       321 ~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~  400 (427)
T PRK07049        321 PFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVL  400 (427)
T ss_pred             CCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCC
Confidence             1  00         01244778888886542445666666642221111          10                 2


Q ss_pred             CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         207 NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       207 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++.||++    ...|+.+.+++.|+++++
T Consensus       401 ~~liR~s----vGlE~~~dl~~dl~~al~  425 (427)
T PRK07049        401 ESTIRLS----IGIEHPDDLIADLAQALD  425 (427)
T ss_pred             cCeEEEE----eCcCCHHHHHHHHHHHHh
Confidence            4689999    445677778888877775

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.61  E-value=1.4e-14  Score=123.31  Aligned_cols=214  Identities=14%  Similarity=0.177  Sum_probs=131.4

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++.+|+++ +...++++++|++|.++|++|.+.+    +++|+++|++||+++|+|+++... ....+.     ...
T Consensus       128 v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-~~~~pl-----~~g  197 (390)
T PRK08133        128 TTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-ALQQPL-----KLG  197 (390)
T ss_pred             EEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch-----hhC
Confidence            44567777887 5555678999999999999997765    899999999999999999998521 111111     123


Q ss_pred             CCEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|.+++ | .++ |+++++++.++.+...........++..+..++..++.+..  ..++..+++..+.+.|
T Consensus       198 ~Divv~S~sK~~~g~g-~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la~~L  274 (390)
T PRK08133        198 ADVVIHSATKYLDGQG-RVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALAEWL  274 (390)
T ss_pred             CcEEEeecceeecCCc-ceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHH
Confidence            46666  7799984 5 666 56667777665554322222223445554444444443322  3455556777888888


Q ss_pred             HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548         159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-------  205 (242)
                       +..+.       +...         ...+.|.++.|++......+..|.+.|.--.+.++          |.       
T Consensus       275 -~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~  353 (390)
T PRK08133        275 -EAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRL  353 (390)
T ss_pred             -HhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcccC
Confidence             54432       1111         12345778999986432345566666642211111          10       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                .++.+|++    ...|+.+.+++-|+++++
T Consensus       354 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~  389 (390)
T PRK08133        354 SPEARAAAGITEGLIRVA----VGLEDVADIKADLARGLA  389 (390)
T ss_pred             CHHHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHhh
Confidence                      24689999    444567778887777764

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.60  E-value=2.7e-13  Score=118.41  Aligned_cols=217  Identities=16%  Similarity=0.129  Sum_probs=134.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL-   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~-   88 (242)
                      |+++ +...++++++|++..++ ++|.+   ...+++|+++|+++|+++++|+++. .+..|.. ....  ...|++++ 
T Consensus       197 D~e~L~~~i~~~t~~V~v~~Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~--~GaD~~~~~  268 (481)
T PRK04366        197 DLEALKAAVGEDTAALMLTNPN-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGD--MGFDVVHLN  268 (481)
T ss_pred             CHHHHHhhcccCCeEEEEeCCC-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Cccc--cCCCEEEEe
Confidence            4555 44446678888887755 67743   1349999999999999999999984 1112211 1122  34688774 


Q ss_pred             -ecccc-----CCccchheeEeChhhhhccCCCCC-----CC--------------CCCCCHHHHHHHHHHHHHHHhccH
Q psy6548          89 -GKALS-----GGLYPISAVLADDEVMGTLVPGTH-----GS--------------TYGGNPLACKLAMTALDVILEENM  143 (242)
Q Consensus        89 -sK~~~-----~g~~~~g~~~~~~~~~~~l~~~~~-----~~--------------~~~~~~~~~~~a~a~l~~~~~~~~  143 (242)
                       .|+|+     || ..+|++..++++.+.+.....     .+              .++++.+.+.+++..+..+-.+++
T Consensus       269 ~hK~l~~P~g~Gg-p~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl  347 (481)
T PRK04366        269 LHKTFSTPHGGGG-PGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGL  347 (481)
T ss_pred             chhhcCCCCCCCC-CCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHH
Confidence             49887     33 456788888777766632110     00              112223333344444444433433


Q ss_pred             ---HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEec---CCchhHHHHHHHHHHCCceeccC-----CCCEEEE
Q psy6548         144 ---IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD---KSILEVYDVCIKMKDAGLVTKPI-----SNNIIRL  212 (242)
Q Consensus       144 ---~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~  212 (242)
                         .++...+.++++++| +++. ..... ...-..+.+..+   ..+.+..++.++|.++||.+...     ..+.+|+
T Consensus       348 ~~~a~~~~~~a~~l~~~L-~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~i  424 (481)
T PRK04366        348 REVSEDAVLNANYLKARL-KDIY-DLPYD-RPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMI  424 (481)
T ss_pred             HHHHHHHHHHHHHHHHHh-HhhC-cccCC-CCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEE
Confidence               355566788999999 5542 11111 111111223221   11136788999999999987621     2568999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         213 SPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +++..+|++|||++++.|+++.+++.+
T Consensus       425 s~~e~~t~edid~l~~~l~~i~~~~~~  451 (481)
T PRK04366        425 EPTETESKETLDAFIAAMKQIAEEAKE  451 (481)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887654

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.60  E-value=2.1e-14  Score=122.61  Aligned_cols=213  Identities=15%  Similarity=0.183  Sum_probs=132.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++.+|+++ +...+.++++|++|.+.|++|.+++    +++|+++|++||+++|+|++|... ....+.     ...
T Consensus       137 v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~-~~~~~~-----~~g  206 (403)
T PRK07810        137 TVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP-LLQRGL-----PLG  206 (403)
T ss_pred             EEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCChh-----hcC
Confidence            45567788888 5555568999999999999997775    999999999999999999999521 111111     223


Q ss_pred             CCEEE--eeccccC-Cccch-heeEeChhhhh-ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      .|+++  ++|.++| | .++ |+++++++.+. .++..........++..+..++..++.+.  ...++.+++..++.+.
T Consensus       207 aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~  283 (403)
T PRK07810        207 ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEF  283 (403)
T ss_pred             CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHH
Confidence            57777  6699984 5 555 77777776543 23321111222456666666666666443  3456677778888888


Q ss_pred             HHhhcCCC-------CCCe---------EeeeceeEEEEecCC----chhHHHHHHHHHHC----------CceeccC--
Q psy6548         158 LRSRLSPD-------IVPV---------VRGKGLLNAIVLDKS----ILEVYDVCIKMKDA----------GLVTKPI--  205 (242)
Q Consensus       158 l~~~l~~~-------~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~----------gi~~~~~--  205 (242)
                      | +..+..       ....         ..+.|.++.|++...    ...+..|++.|.--          .++..|.  
T Consensus       284 L-~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~  362 (403)
T PRK07810        284 L-EGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPATT  362 (403)
T ss_pred             H-hcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCCCcc
Confidence            8 555421       1111         124577888988652    13345566544311          2222221  


Q ss_pred             ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                     ..+.+|++    ...|+.+.+++.|++++
T Consensus       363 ~h~~~~~~~~~~~gi~~~lvR~s----vGlE~~~dli~dl~~Al  402 (403)
T PRK07810        363 THRAMGPEGRAAIGLGDGVVRLS----VGLEDTDDLIADLDRAL  402 (403)
T ss_pred             ccccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHhh
Confidence                           24689999    44567777777777664

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.60  E-value=8.6e-14  Score=117.05  Aligned_cols=205  Identities=19%  Similarity=0.208  Sum_probs=129.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++|++++   ++|...+    +++|.++|++||+++|+|++|+ +|.....   ...+...|+.++|
T Consensus        95 d~~~l~~~i~~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~~~---~~~~~~~d~~~~S  163 (352)
T cd00616          95 DPELIEAAITPRTKAIIPVH---LYGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATYKG---RKVGTFGDAGAFS  163 (352)
T ss_pred             CHHHHHHhcCcCCeEEEEEC---CCCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeECC---EEcccCcceeEEc
Confidence            4555 333356788888765   4665544    8999999999999999999996 2211111   1123334666655


Q ss_pred             ----ccccCCccchheeEeC-hhhhhccCCCC---------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Q psy6548          90 ----KALSGGLYPISAVLAD-DEVMGTLVPGT---------------HGSTYGGNPLACKLAMTALDVILEENMIENAYK  149 (242)
Q Consensus        90 ----K~~~~g~~~~g~~~~~-~~~~~~l~~~~---------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~  149 (242)
                          |++++|  ..|+++.+ +++.+.++...               .+.++..+++..+.++..++.+  +.+.++.++
T Consensus       164 ~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~  239 (352)
T cd00616         164 FHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRRE  239 (352)
T ss_pred             CCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHH
Confidence                999754  35666665 56665544210               1112234455555554444433  345677888


Q ss_pred             HHHHHHHHHHhhcCC-CCCCeEe---eeceeEEEEecCC-chhHHHHHHHHHHCCceeccC---------C---------
Q psy6548         150 MGEIFRSELRSRLSP-DIVPVVR---GKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPI---------S---------  206 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~-~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~---------~---------  206 (242)
                      +.+++++.| +.++. .+.....   ....++.+.++.. +.+..++.+.|.++||.++..         .         
T Consensus       240 ~~~~~~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~  318 (352)
T cd00616         240 IAERYKELL-ADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPG  318 (352)
T ss_pred             HHHHHHHHh-cCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcC
Confidence            999999999 66542 1221111   2345666666531 157889999999999976521         0         


Q ss_pred             ---------CCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         207 ---------NNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       207 ---------~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                               .+.+|+.++..+|++|++++++.|+
T Consensus       319 ~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         319 DLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence                     1579999999999999999998873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.59  E-value=3.6e-14  Score=120.83  Aligned_cols=214  Identities=13%  Similarity=0.089  Sum_probs=135.0

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++.+|+++ +...++++++|++|.++|++|.+.+    +++|.++|++||+++|+|++|... ..+.+     .+...
T Consensus       127 ~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~-~~~~~-----~~~g~  196 (391)
T TIGR01328       127 DFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATP-MLTNP-----VALGV  196 (391)
T ss_pred             EEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchh-ccCCc-----hhcCC
Confidence            3456677777 5555668999999999999997765    999999999999999999999521 11211     12345


Q ss_pred             CEEE--eeccccC-Cccc-hheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG-GLYP-ISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      |+++  ++|.+++ | .+ .|++++++++++.++....  ......++..+..++..++.+  +...++.+++...+.+.
T Consensus       197 Divv~S~sK~lgg~g-~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~  273 (391)
T TIGR01328       197 DVVVHSATKYIGGHG-DVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEY  273 (391)
T ss_pred             CEEEccccccccCCC-CceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHH
Confidence            6666  7799983 4 44 5777788888877763211  112234455554444444433  23456677888888888


Q ss_pred             HHhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC------
Q psy6548         158 LRSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI------  205 (242)
Q Consensus       158 l~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~------  205 (242)
                      | +..+.       +....         ..+.|.++.|++.........|.+.|.--.+..+          |.      
T Consensus       274 L-~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~  352 (391)
T TIGR01328       274 L-KSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAV  352 (391)
T ss_pred             H-HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCcccccc
Confidence            8 65442       11111         1234678889986432345566666532111111          10      


Q ss_pred             -----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 -----------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 -----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                 ..+.+|++    ...|+.+.+++.|+++++.
T Consensus       353 ~~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~  390 (391)
T TIGR01328       353 VPKEEREAAGITDGMIRLS----VGLEDADDLIADLKQALDA  390 (391)
T ss_pred             CCHHHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHhh
Confidence                       24689999    4556788888888888765

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.59  E-value=7e-14  Score=119.43  Aligned_cols=178  Identities=15%  Similarity=0.139  Sum_probs=114.5

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++..|++. +...++++++|+++.++|++|.+.+    +++|.++|++||+++|+|++|..-. ...+.     ....
T Consensus       128 ~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~-~~~pl-----~~ga  197 (405)
T PRK08776        128 ITADLTDPRSLADALAQSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPA-LQKPL-----EFGA  197 (405)
T ss_pred             EEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccc-cCCcc-----cccC
Confidence            4455667777 4444568999999999999997654    9999999999999999999996311 11111     2345


Q ss_pred             CEEE--eeccccC--CccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        84 ~~~~--~sK~~~~--g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      |+++  .+|.++|  + ...|+++. ++++.+++........+..+++.+......++.+.  ...++.+++...+.+.|
T Consensus       198 Divv~S~tK~l~g~~~-~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~--~r~~~~~~na~~la~~L  274 (405)
T PRK08776        198 DLVLHSTTKYINGHSD-VVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLD--ARLRVHQENADAIAALL  274 (405)
T ss_pred             CEEEecCceeecCCCC-ceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHH--HHHHHHHHHHHHHHHHH
Confidence            7766  5699984  4 44677765 46666665432222223457777666665555443  35677888888888888


Q ss_pred             HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHH
Q psy6548         159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMK  196 (242)
Q Consensus       159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  196 (242)
                       +..+.       +...         ...+.|.++.|++.........|.+.|.
T Consensus       275 -~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~  327 (405)
T PRK08776        275 -DGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLR  327 (405)
T ss_pred             -HcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCC
Confidence             55542       1111         1134577899998654233456666664

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.57  E-value=1.1e-13  Score=118.22  Aligned_cols=216  Identities=14%  Similarity=0.115  Sum_probs=132.6

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++.+|++. +...++++++|++|.++|++|.+.+    +++|.++|++||+++|+|++|+.. ..+.+     .+...
T Consensus       133 ~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~-~~~~~-----l~~g~  202 (403)
T PRK07503        133 RHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP-YLQRP-----LELGA  202 (403)
T ss_pred             EEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCCc-----hhhCC
Confidence            3456667777 4444558999999999999997665    899999999999999999999632 11211     12345


Q ss_pred             CEEE--eeccccC-CccchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG-GLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      |+++  ++|.+++ |-.++|+++.+++++++++..  ........+++.+..++..++.+.  ...++..++...+.+.|
T Consensus       203 Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L  280 (403)
T PRK07503        203 DLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWL  280 (403)
T ss_pred             CEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHH
Confidence            6666  7799994 215678888888888877632  122234556666655555555442  23455567778888888


Q ss_pred             HhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHH--CCceec--------cC-------
Q psy6548         159 RSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVTK--------PI-------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~~--------~~-------  205 (242)
                       +..+.       +....         ..+.|.++.+.+..+......|.+.|.-  .+.-+.        |.       
T Consensus       281 -~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~  359 (403)
T PRK07503        281 -ARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHSTY  359 (403)
T ss_pred             -HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCCccccC
Confidence             55432       11110         1124667888886542234455544431  221110        10       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                ..+.+|+++    ..|+.+.+++.|+++++..
T Consensus       360 ~~~~~~~~gi~~~liR~sv----GlE~~~dl~~dl~~Al~~~  397 (403)
T PRK07503        360 TPEERAEHGISEGLVRLSV----GLEDVADILADLAQALDAC  397 (403)
T ss_pred             CHHHHHhcCCCCCeEEEEE----ecCCHHHHHHHHHHHHHHH
Confidence                      246899994    4456667777777766653

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.57  E-value=5.2e-13  Score=112.04  Aligned_cols=210  Identities=11%  Similarity=0.085  Sum_probs=144.6

Q ss_pred             cCCCChhh-h-cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           7 VKSKQVPA-K-LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         7 ~~~~d~~~-~-~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      +||.++.+ + ...++++++|.+...-+++|...+         ++++.+++++++|.+++ +  .+.+..++.+    |
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~---------~l~~~~~~l~iVDavss-~--g~~~id~~~~----d  177 (349)
T TIGR01364       114 GNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR---------ELPDVKNAPLVADMSSN-I--LSRPIDVSKF----G  177 (349)
T ss_pred             CCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc---------eecccCCCeEEEEcccc-c--cCccCCHHHc----c
Confidence            45766665 3 334568899999999888996544         67778999999999986 2  2223333333    3


Q ss_pred             EEEee--ccccCCccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhc-c---HHHH
Q psy6548          85 IVILG--KALSGGLYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILEE-N---MIEN  146 (242)
Q Consensus        85 ~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~~-~---~~~~  146 (242)
                      ++++|  |++| + .++|++..++++++++.+..           ...++ +.|.....+..++++.+.++ +   +.++
T Consensus       178 ~~~~ssqK~lg-P-~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r  255 (349)
T TIGR01364       178 LIYAGAQKNIG-P-AGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKR  255 (349)
T ss_pred             EEEEecccccC-C-CceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66655  9997 4 56899999999988775531           01222 34455666666788887664 3   5677


Q ss_pred             HHHHHHHHHHHHHhhcCCC-CC-CeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHH
Q psy6548         147 AYKMGEIFRSELRSRLSPD-IV-PVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQ  221 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e  221 (242)
                      .+++.+++++.| +.++.- .. ......+ ..+.|.++.. ....++.+.+.++|+++.++.  .+.+|+++..++|.|
T Consensus       256 ~~~l~~~l~~~l-~~~~gl~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~e  333 (349)
T TIGR01364       256 NQAKAQLLYDTI-DNSNGFYRNPVDPRNRSRMNVVFTLGNE-ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLE  333 (349)
T ss_pred             HHHHHHHHHHHH-HhCCCeeccCCCHHHcCCeEEEEecCCh-hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHH
Confidence            778899999999 777521 11 1111123 4567776654 234677788899999666653  478999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINT  236 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~  236 (242)
                      ||+++++.|++++++
T Consensus       334 did~l~~al~~~~~~  348 (349)
T TIGR01364       334 GVQALVDFMKEFQKK  348 (349)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999986653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.56  E-value=1.8e-13  Score=116.29  Aligned_cols=212  Identities=16%  Similarity=0.131  Sum_probs=133.4

Q ss_pred             CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548           8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus         8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +..|+++ +...++++++|+++.++|++|.+.+    +++|.++|+++|+++|+||+|.... ...+     .....|++
T Consensus       123 d~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~-~~~p-----l~~gaDiv  192 (386)
T PRK08045        123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPA-LQNP-----LALGADLV  192 (386)
T ss_pred             CCCCHHHHHHhcccCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc-cCCc-----hhhCCCEE
Confidence            4446666 4444558899999999999997775    8899999999999999999995321 1111     12344766


Q ss_pred             E--eeccccC--CccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 I--LGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 ~--~sK~~~~--g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +  ++|.++|  + ...|+++. ++++++.+...........+++.+..+...++.+..  ..++..+++..+.+.| +.
T Consensus       193 v~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~na~~la~~L-~~  268 (386)
T PRK08045        193 LHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIVKYL-QT  268 (386)
T ss_pred             EeecceeccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHHHHHHHHHHH-Hc
Confidence            6  7799984  4 45777766 466666554322223334667766666656654432  3466777788888888 54


Q ss_pred             cCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548         162 LSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI----------  205 (242)
Q Consensus       162 l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~----------  205 (242)
                      .+.       +...         ...+.|.++.|++..+......|.+.|.--.+.++          |.          
T Consensus       269 ~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~  348 (386)
T PRK08045        269 QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPE  348 (386)
T ss_pred             CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHH
Confidence            442       1111         11245778889986542334667776653222221          10          


Q ss_pred             -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 -------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                             .++.+|++    ...|+.+.+++-|+++++..
T Consensus       349 ~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        349 ARAAAGISETLLRIS----TGIEDGEDLIADLENGFRAA  383 (386)
T ss_pred             HHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHHHh
Confidence                   24689999    34456777777777777654

>KOG0256|consensus

Probab=99.56  E-value=6.6e-13  Score=108.79  Aligned_cols=208  Identities=14%  Similarity=0.193  Sum_probs=135.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccc---cc-CCCCCC----EEEe
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI---HY-EDVRPD----IVIL   88 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~---~~-~~~~~~----~~~~   88 (242)
                      +.+++++++.+++||-|++. +++.|..+..++.++|+.+|+||+|++  |+..+ ..++   .. ....+|    +..+
T Consensus       224 ~~kVkGvlitNPsNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~-F~Sv~ev~~~~~~~~~rvHivysl  301 (471)
T KOG0256|consen  224 GLKVKGVLITNPSNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSE-FRSVLEVRKDPHLDPDRVHIVYSL  301 (471)
T ss_pred             CCceeEEEEeCCCCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccC-ceEHHHHhhccccCCCcEEEEEEe
Confidence            56899999999999999654 667899999999999999999999987  43332 1111   11 111344    3448


Q ss_pred             ecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH--HHh---ccHHHHHHHHHHHHHHHHHhh
Q psy6548          89 GKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--ILE---ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~--~~~---~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ||=|| +| +|.|.+... +.+.....+....+  ..++..+..+...|..  +.+   ++..++++...+++.++| ++
T Consensus       302 SKD~GlpG-fRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gL-k~  377 (471)
T KOG0256|consen  302 SKDFGLPG-FRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGL-KA  377 (471)
T ss_pred             ccccCCCc-eEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhH-Hh
Confidence            99999 89 999999875 45555444422111  2344444433322322  111   223456666777777888 77


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcC-CHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNI-TEQELREGLD  228 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~-t~e~i~~~~~  228 (242)
                      ++  +.-.....|++.|+++..--     ...-++.+.+.++ ++.++|+      -++.+|++  +.+ .++.++-+++
T Consensus       378 lg--I~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvc--FAn~~~~t~~~am~  453 (471)
T KOG0256|consen  378 LG--IPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVC--FANMSEETLEVAMR  453 (471)
T ss_pred             cC--CceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEE--eccCCHHHHHHHHH
Confidence            76  33334567899999876521     2233466666666 9999887      47899999  444 4445555999


Q ss_pred             HHHHHHHH
Q psy6548         229 IIINTINT  236 (242)
Q Consensus       229 ~l~~~l~~  236 (242)
                      +|...+.+
T Consensus       454 Ri~~~~~~  461 (471)
T KOG0256|consen  454 RLKQFLDS  461 (471)
T ss_pred             HHHHHHHh
Confidence            99887764

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.56  E-value=1.7e-13  Score=116.31  Aligned_cols=210  Identities=15%  Similarity=0.150  Sum_probs=132.6

Q ss_pred             CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548           8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus         8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +-.|++. +...++++++|+++.++|++|.+++    +++|+++|+++|+++|+|++|..+... .+.     ....|++
T Consensus       122 d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~-~pl-----~~gaDiv  191 (382)
T TIGR02080       122 DQGDEQALRAALAQKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPALQ-NPL-----ALGADLV  191 (382)
T ss_pred             CCCCHHHHHHhcCcCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccccC-Cch-----hhCCCEE
Confidence            3345666 4444567999999999999997765    889999999999999999999632111 111     1234666


Q ss_pred             E--eecccc--CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 I--LGKALS--GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 ~--~sK~~~--~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +  ++|.++  ++ .+.|++.. ++++++.+...........+++.+..++..++.+...  .++..+++..+.+.| +.
T Consensus       192 v~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~R--~~~~~~na~~~a~~L-~~  267 (382)
T TIGR02080       192 LHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVAR--MRLQQRNAQAIVEYL-QT  267 (382)
T ss_pred             EeecceeccCCCC-ceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHHH--HHHHHHHHHHHHHHH-Hh
Confidence            6  789997  35 56888766 5667666654323333456677666655556554432  456667888888888 55


Q ss_pred             cCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548         162 LSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI----------  205 (242)
Q Consensus       162 l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~----------  205 (242)
                      .+.       +...         ...+.|.++.|++..+......|.+.|.--++.++          |.          
T Consensus       268 ~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~  347 (382)
T TIGR02080       268 QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPE  347 (382)
T ss_pred             CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCccCcccCCHH
Confidence            442       1111         11245778999996532334556666542222221          10          


Q ss_pred             -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 -------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                             ..+.+|++    ...|+.+.+++.|+++++
T Consensus       348 ~~~~~gi~~~liRls----vGlE~~~dl~~dl~~al~  380 (382)
T TIGR02080       348 ARAEAGISDTLLRLS----VGLEDADDLIADLEQGLR  380 (382)
T ss_pred             HHHhcCCCcCeEEEE----eccCCHHHHHHHHHHHHh
Confidence                   24689999    445567777777777765

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.55  E-value=1.3e-13  Score=117.45  Aligned_cols=213  Identities=15%  Similarity=0.198  Sum_probs=128.4

Q ss_pred             ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      .++..|++. +...++++++|++|.++|++|...+    +++|+++|++||+++|+|++|... ....+     .+...|
T Consensus       130 ~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~-~~~~p-----~~~gaD  199 (388)
T PRK07811        130 PVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP-YLQQP-----LALGAD  199 (388)
T ss_pred             EeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCCc-----hhhCCc
Confidence            345567777 4444568999999999999986654    999999999999999999998532 11111     123457


Q ss_pred             EEE--eeccccC-CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          85 IVI--LGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        85 ~~~--~sK~~~~-g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +++  ++|+++| |-...|+++++ +++.+.+...........++..+..++..++.+  +...++.+++...+.+.| +
T Consensus       200 ivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L-~  276 (388)
T PRK07811        200 VVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFL-A  276 (388)
T ss_pred             EEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHH-H
Confidence            666  6799985 21346887764 566565543212212233454443334334432  234566677888888888 5


Q ss_pred             hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548         161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------  205 (242)
Q Consensus       161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------  205 (242)
                      ..+.       +...         ...+.|.++.|++......+..|.+.|.--.+.++          |.         
T Consensus       277 ~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~  356 (388)
T PRK07811        277 GHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAG  356 (388)
T ss_pred             hCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCcccCCH
Confidence            5442       1111         11245778999996432445566666642111111          10         


Q ss_pred             -----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 -----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 -----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                           .++.+|+++.    .|+.+.+++.|.++++
T Consensus       357 ~~~gi~~~liR~svG----lE~~~dl~~dl~~al~  387 (388)
T PRK07811        357 SQLEVPDDLVRLSVG----IEDVADLLADLEQALG  387 (388)
T ss_pred             hhcCCCCCEEEEEeC----CCCHHHHHHHHHHHhh
Confidence                 2468999944    4566677777766654

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.55  E-value=1.7e-13  Score=116.03  Aligned_cols=212  Identities=13%  Similarity=0.034  Sum_probs=130.3

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      ++.++.+. +...++++++|++|.+.|++|.+.+    +++|+++|++||+++|+|++|+. +....+     .....|+
T Consensus       120 ~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a~-g~~~~p-----l~~gaDi  189 (377)
T TIGR01324       120 YDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWAA-GLLFKP-----LEHGVDI  189 (377)
T ss_pred             ECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcc-ccccCc-----cccCceE
Confidence            34444455 5555668999999999999987665    99999999999999999999952 111111     1335677


Q ss_pred             EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ++  ++|+++|  + ...|+++++++.++.+...........+|..+...+..++.+.  -..++..+++..+.+.| +.
T Consensus       190 vv~S~tK~l~G~~d-~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L-~~  265 (377)
T TIGR01324       190 SIQAGTKYLVGHSD-IMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWL-SE  265 (377)
T ss_pred             EEecCceeccCCCC-ceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH-Hh
Confidence            77  5799984  3 3467888888776666532111222334544444444444332  23455666666777888 44


Q ss_pred             cCC-------CCCC---------eEeeeceeEEEEecC-CchhHHHHHHHHHHCCceeccC-------------------
Q psy6548         162 LSP-------DIVP---------VVRGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVTKPI-------------------  205 (242)
Q Consensus       162 l~~-------~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~-------------------  205 (242)
                      .+.       +...         ...+.|.++.|++.. .......|.+.|.--++.++-+                   
T Consensus       266 ~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~  345 (377)
T TIGR01324       266 QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNI  345 (377)
T ss_pred             CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHH
Confidence            332       1111         112457788899864 2245667777776544443211                   


Q ss_pred             ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 ----SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                          .++.+|+++    ..|+.+.+++.|+++++.
T Consensus       346 ~~~~~~~liR~sv----GlE~~~dl~~dl~~al~~  376 (377)
T TIGR01324       346 KRNLEGPLIRVHI----GLENVDDLKADLKAGFEA  376 (377)
T ss_pred             hccCCCCEEEEEe----CCCCHHHHHHHHHHHHhc
Confidence                125789993    445667777777777654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.55  E-value=9.7e-13  Score=110.89  Aligned_cols=198  Identities=13%  Similarity=0.094  Sum_probs=139.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~   96 (242)
                      +.++++|.+...-+++|...++   ++++      ||+++++|.+++ +  .+.+..++.+    |++++|  |++| + 
T Consensus       139 ~~~~~~V~~th~eTstGv~~~~---i~~i------~g~l~vVDavss-~--g~~~idv~~~----d~~~~ssqK~lg-P-  200 (360)
T PRK05355        139 SDDAAYVHYTSNETIDGTEFHE---LPDT------GDVPLVADMSSD-I--LSRPIDVSKF----GLIYAGAQKNIG-P-  200 (360)
T ss_pred             CCCCCEEEEccCCCcceEecCc---cccc------CCCcEEEEcCcc-c--cCccCCHHHc----cEEEEecccccc-C-
Confidence            4478999999999999966542   5444      899999999986 2  2223333333    467766  9997 4 


Q ss_pred             cchheeEeChhhhhccCCC-----------CCCC-CCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHh
Q psy6548          97 YPISAVLADDEVMGTLVPG-----------THGS-TYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~-----------~~~~-~~~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~~  160 (242)
                      .++|+++.++++++++.+.           .... .++.|.....+..++++.+.+.    ++.++.+++.+++++.| +
T Consensus       201 ~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l-~  279 (360)
T PRK05355        201 AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI-D  279 (360)
T ss_pred             CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-H
Confidence            6689999999998887662           1111 2234455666667788888765    35677788899999999 7


Q ss_pred             hcCCC-CCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         161 RLSPD-IVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       161 ~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++.. ..... ......+.|.++.. .+..++.+.+.++|+.+.++.  .+.+|+++..++|.|||+++++.|++++..
T Consensus       280 ~~~~~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        280 SSDFYRNPVAPEDRSRMNVPFTLADE-ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             hCCCcccCCChhhcCCcEEEEEcCCh-HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            77621 11111 12235677777664 455678788899999985553  478999999999999999999999987653

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.54  E-value=2.4e-13  Score=116.40  Aligned_cols=211  Identities=17%  Similarity=0.135  Sum_probs=128.2

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----c------CccCcccc-c-ccCCCCCCEEEe
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----L------GRTGKLLA-I-HYEDVRPDIVIL   88 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~------~~~g~~~~-~-~~~~~~~~~~~~   88 (242)
                      ++++|+++.++|++|+.+.+.+.++++.++|++||++||.|+++..    |      +..+.... . ....-..|..++
T Consensus       152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m  231 (431)
T cd00617         152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM  231 (431)
T ss_pred             CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence            4889999988888755777889999999999999999999999741    1      01111110 0 000012344443


Q ss_pred             e--ccccCCccchheeEeCh-hhhhccCCCC---CCC-CCC-CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          89 G--KALSGGLYPISAVLADD-EVMGTLVPGT---HGS-TYG-GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        89 s--K~~~~g~~~~g~~~~~~-~~~~~l~~~~---~~~-~~~-~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      |  |.++++ . .||+++++ ++++.++...   .+. +++ .+...+.+...+++...+.++.....+.++++.+.| +
T Consensus       232 S~~K~~~~~-~-GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L-~  308 (431)
T cd00617         232 SAKKDGLVN-I-GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRL-D  308 (431)
T ss_pred             EeecCCCCc-c-ceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-H
Confidence            3  444432 1 45788875 5888776421   111 122 233333332224543222233444445568888888 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHHH-CCceeccC-----------------CCCEEEEecc
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKD-AGLVTKPI-----------------SNNIIRLSPA  215 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~~~~~-----------------~~~~lR~~~~  215 (242)
                      +.+  +....+..+++++++.+.-       .....+++..|.+ .||.+...                 .-..+|+..+
T Consensus       309 ~~G--~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p  386 (431)
T cd00617         309 EAG--VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP  386 (431)
T ss_pred             HCC--CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc
Confidence            655  3333456678899887641       1247788866664 57776421                 1368999754


Q ss_pred             -CcCCHHHHHHHHHHHHHHHHH
Q psy6548         216 -LNITEQELREGLDIIINTINT  236 (242)
Q Consensus       216 -~~~t~e~i~~~~~~l~~~l~~  236 (242)
                       ...|.++++.+.+.|.++.++
T Consensus       387 rr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         387 RRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             ccccCHHHHHHHHHHHHHHHhh
Confidence             467999999999999988876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.54  E-value=9.8e-14  Score=116.97  Aligned_cols=207  Identities=17%  Similarity=0.144  Sum_probs=130.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |++. +...++++++|++|.+.|++|....    +++|+++|++||+++|+|+++..- ...     ...+...|+++  
T Consensus       125 d~~~l~~~i~~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~-~~~-----~pl~~gaDivv~S  194 (364)
T PRK07269        125 TEEELIAAIEEDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP-IYQ-----RPIELGADIVLHS  194 (364)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----CchhhCCcEEEec
Confidence            4566 5555678999999999999997664    999999999999999999997421 011     11244578877  


Q ss_pred             eeccccCC-ccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          88 LGKALSGG-LYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        88 ~sK~~~~g-~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      ++|.++|. =.-.|++++ ++++++.++..........+++.+..++..++.+  +...++.++++..+.+.| +..+..
T Consensus       195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L-~~~p~v  271 (364)
T PRK07269        195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFL-KKSPAV  271 (364)
T ss_pred             CceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHH-HhCCCc
Confidence            55999852 012566666 4666666643211112345666666555555544  234567788888898999 655532


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC----------CceeccC-----------------CCCEEEEeccCcC
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA----------GLVTKPI-----------------SNNIIRLSPALNI  218 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------gi~~~~~-----------------~~~~lR~~~~~~~  218 (242)
                      .....++.|.++.|.+... .....|.+.+.--          ++++.|.                 .++.+|++    .
T Consensus       272 ~~v~ypg~gg~~sf~~~~~-~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRls----v  346 (364)
T PRK07269        272 KEVLYTGKGGMISFKVADE-TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLS----I  346 (364)
T ss_pred             cEEeCCCcCcEEEEEECCH-HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEE----e
Confidence            2223356678888888642 3455555555322          2232231                 24689999    4


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTIN  235 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~  235 (242)
                      ..|+.+.+++-|+++++
T Consensus       347 GlE~~~dli~dl~~al~  363 (364)
T PRK07269        347 GIEDARDLIADLKQALE  363 (364)
T ss_pred             ccCCHHHHHHHHHHHhc
Confidence            45577777777777663

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.53  E-value=2.4e-12  Score=119.04  Aligned_cols=219  Identities=15%  Similarity=0.118  Sum_probs=140.4

Q ss_pred             Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      |+++  +.+.+  +++++|++..+++.+|...+    +++|.++|+++|+++++|.++.-    +......-..+..|++
T Consensus       652 Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~----a~~~l~~p~~~GaD~~  723 (993)
T PLN02414        652 NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANMN----AQVGLTSPGFIGADVC  723 (993)
T ss_pred             CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCHH----hccCcCCccccCCCEE
Confidence            5566  33433  58999999999999886655    99999999999999999999941    1111111113456888


Q ss_pred             Eee--cccc-----CCccchheeEeChhhhhccCCCCC--------------CCCCC----CCHHHHHHHHHHHHHHHhc
Q psy6548          87 ILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH--------------GSTYG----GNPLACKLAMTALDVILEE  141 (242)
Q Consensus        87 ~~s--K~~~-----~g~~~~g~~~~~~~~~~~l~~~~~--------------~~~~~----~~~~~~~~a~a~l~~~~~~  141 (242)
                      +++  |+|+     || .++|.+.+++++...+-....              .++..    ++.+.+..++.-++.+-.+
T Consensus       724 ~~s~HK~f~~P~G~GG-Pg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~  802 (993)
T PLN02414        724 HLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSE  802 (993)
T ss_pred             EecCCccCCcCcccCC-CCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHh
Confidence            864  8777     45 568889888877766542110              01111    1223333334344444334


Q ss_pred             cH---HHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecC----CchhHHHHHHHHHHCCceecc---CCCCEE
Q psy6548         142 NM---IENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDK----SILEVYDVCIKMKDAGLVTKP---ISNNII  210 (242)
Q Consensus       142 ~~---~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~---~~~~~l  210 (242)
                      ++   .++...++++++++| +.........+. ....-+.+.+..    .+.++.++.++|.+.|+....   ...+.+
T Consensus       803 Gl~~~a~~a~~nAnYl~~rL-~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~l  881 (993)
T PLN02414        803 GLTDASKIAILNANYMAKRL-EGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTL  881 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEE
Confidence            45   667778999999999 442211111111 111122233331    114568899999999987642   137889


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         211 RLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      |++|+...+++|+|++++.+..+..+...
T Consensus       882 miepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        882 MIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             EEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887653

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.53  E-value=2.8e-13  Score=114.92  Aligned_cols=214  Identities=14%  Similarity=0.098  Sum_probs=130.4

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCC
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~   84 (242)
                      ++..|+++ +...++++++|++|.++|++|.+.+    +++|.++|+++|+++|+|++|.. +.  ..+     .....|
T Consensus       123 vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~--~~p-----l~~GaD  191 (388)
T PRK08861        123 VDQSDAAALDAALAKKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVL--QKP-----LELGAD  191 (388)
T ss_pred             ECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccc--CCC-----cccCCC
Confidence            34456776 5444568999999999999998776    88999999999999999999952 21  111     123467


Q ss_pred             EEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          85 IVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        85 ~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +++  ++|.++|. =...|+++++ +++.+.++..........+|..+...+..++.+.-  ..++..+++..+.+.| +
T Consensus       192 ivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~~a~~~a~~L-~  268 (388)
T PRK08861        192 FVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEESAQQILAYL-Q  268 (388)
T ss_pred             EEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHH-H
Confidence            777  56999853 0346777664 55655554321222223455555444444443322  3455667777788888 5


Q ss_pred             hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548         161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------  205 (242)
Q Consensus       161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------  205 (242)
                      ..+.       +...         ...+.|.++.|++.........|.+.|.--.+.++          |.         
T Consensus       269 ~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~  348 (388)
T PRK08861        269 TQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGE  348 (388)
T ss_pred             hCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccccccCH
Confidence            5442       1111         11245778899986432345556665542111111          10         


Q ss_pred             --------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 --------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 --------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                              ..+.+|++    ...|+.+.+++.|+++++.+.
T Consensus       349 ~~~~~~gi~~~liRls----vGlE~~~dli~Dl~~al~~~~  385 (388)
T PRK08861        349 EALAEAGVSQQLLRLS----VGLEDAQDLIADLDQAFAKAA  385 (388)
T ss_pred             HHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHHHHH
Confidence                    24689999    344577777777777777654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.53  E-value=3.2e-13  Score=114.12  Aligned_cols=194  Identities=16%  Similarity=0.102  Sum_probs=121.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccC--C
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSG--G   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~--g   95 (242)
                      +++++|++|.++|++|.+.+    +++|+++|+++|+++++|++|...  .+.. ..   ....|+++  ++|+++|  |
T Consensus       131 ~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~--~~~~-p~---~~g~Divv~S~sK~l~G~~g  200 (366)
T PRK07582        131 AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP--LGQR-PL---ELGADLVVASDTKALTGHSD  200 (366)
T ss_pred             cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc--cccC-ch---hcCCcEEEecccccccCCCC
Confidence            57899999999999986665    999999999999999999998421  1211 11   23457666  7799974  6


Q ss_pred             ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CC
Q psy6548          96 LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IV  167 (242)
Q Consensus        96 ~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~  167 (242)
                       .++||++++ +++++.+...........+++.+..+...++.+.  ...++.++++..+.+.| +..+..       ..
T Consensus       201 -~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L-~~~p~v~~v~yp~l~  276 (366)
T PRK07582        201 -LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELL-AGHPAVRGVRYPGLP  276 (366)
T ss_pred             -eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHH-HhCCCccEEECCCCC
Confidence             678998874 6776666532222222345565554444444332  23477778899999999 665531       11


Q ss_pred             CeE---------eeeceeEEEEecCCchhHHHHHHHHHHCCceec---c----------------CCCCEEEEeccCcCC
Q psy6548         168 PVV---------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK---P----------------ISNNIIRLSPALNIT  219 (242)
Q Consensus       168 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~----------------~~~~~lR~~~~~~~t  219 (242)
                      ..+         .+.|.++.|++.+    .++..+.+...++...   -                ..++.||+++++..+
T Consensus       277 ~~p~~~~~~~~~~~~gg~~s~~~~~----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~  352 (366)
T PRK07582        277 GDPAHEVAARQMRRFGGLVSFELAD----AAAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDT  352 (366)
T ss_pred             CCccHHHHHhhCCCCcceEEEEeCC----HHHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCH
Confidence            111         1357788888863    2334444444444432   0                124689999777766


Q ss_pred             HHHHHHHHHHHH
Q psy6548         220 EQELREGLDIII  231 (242)
Q Consensus       220 ~e~i~~~~~~l~  231 (242)
                      ++.++.+.++|+
T Consensus       353 ~dli~dl~~al~  364 (366)
T PRK07582        353 DDLVADLERALD  364 (366)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555543

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.52  E-value=2.6e-13  Score=115.08  Aligned_cols=215  Identities=14%  Similarity=0.156  Sum_probs=133.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++.+|++. +...++++++|++|.+.|++|.+.+    +++|+++|++||+++|+|++|... ....+  .   ...
T Consensus       113 v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~-~~~~~--l---~~g  182 (378)
T TIGR01329       113 VVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSP-LLCNP--L---ELG  182 (378)
T ss_pred             EEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-ccCCh--h---hcC
Confidence            34556667777 5445678999999999999997775    999999999999999999998411 11111  1   224


Q ss_pred             CCEEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|+++|+ -...|+++++ +++.+++.+.........++..+..+...++.+  +...++..++...+.+.|
T Consensus       183 ~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~la~~L  260 (378)
T TIGR01329       183 ADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARAIAMFL  260 (378)
T ss_pred             CcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHH
Confidence            57776  56999853 0347888764 555565554322112233444433222222222  223455666677777777


Q ss_pred             HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------
Q psy6548         159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------  205 (242)
Q Consensus       159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------  205 (242)
                       +..+..       ...         ...+.+.++.|++.+. ..+.+|++.|..-++.++.+                 
T Consensus       261 -~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~-~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~  338 (378)
T TIGR01329       261 -STHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV-ALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASI  338 (378)
T ss_pred             -HhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-HHHHHHHHhCcCcccccCCCCCCceeeCCCccccccC
Confidence             443320       111         1124567889998432 34788999996656555422                 


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                .++.+|++    ...|+.+.+++-|+++++.
T Consensus       339 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~  375 (378)
T TIGR01329       339 PAEVREERGLPEDLVRLS----VGIEDVDDLISDLDIAFVT  375 (378)
T ss_pred             CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHh
Confidence                      24689999    4456778888888887764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05968 hypothetical protein; Provisional

Probab=99.52  E-value=2.3e-13  Score=115.88  Aligned_cols=213  Identities=14%  Similarity=0.034  Sum_probs=132.2

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++.+|++. +... .++++|++|.+.++.+..    ..+++|+++|++||+++|+|++|.... ...+.   .++  .
T Consensus       131 ~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~----~dl~~i~~la~~~gi~vivD~a~a~~~-~~~p~---~~g--~  199 (389)
T PRK05968        131 DYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFEL----QDVAALAALAKRHGVVTMIDNSWASPV-FQRPI---TLG--V  199 (389)
T ss_pred             EEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcchh-ccCch---hcC--C
Confidence            3456667777 3333 468899999877665544    459999999999999999999985321 11111   123  4


Q ss_pred             CEEE--eeccccC-CccchheeEeChhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG-GLYPISAVLADDEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      |+++  ++|.++| |-.+.|+++++++++++++.... ......+++.+..++..++.+  +...++.+++...+.+.| 
T Consensus       200 Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L-  276 (389)
T PRK05968        200 DLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRL-  276 (389)
T ss_pred             cEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHH-
Confidence            6666  6799994 21457888888888777664211 111234566555555555544  334556666788888888 


Q ss_pred             hhcCCCC-CCeE----------eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------
Q psy6548         160 SRLSPDI-VPVV----------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------  205 (242)
Q Consensus       160 ~~l~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------  205 (242)
                      +..+... ...+          .+.|.++.|++... .+..+|++.|...++.++.+                       
T Consensus       277 ~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~-~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~  355 (389)
T PRK05968        277 KAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG-IDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAA  355 (389)
T ss_pred             HhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-HHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHH
Confidence            6655311 1000          13456888888754 57788999997765444311                       


Q ss_pred             ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 ----SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                          ..+.+|+++.+.    +.+.+++-|+++++.
T Consensus       356 ~~gi~~~liR~SvGlE----~~~dl~~dl~~al~~  386 (389)
T PRK05968        356 RFGVSPRSVRLHVGLE----GTEALWADLEQALAA  386 (389)
T ss_pred             hcCCCCCeEEEEeccC----CHHHHHHHHHHHHHH
Confidence                146899996655    445555555555554

>PLN02509 cystathionine beta-lyase

Probab=99.52  E-value=4.3e-13  Score=115.81  Aligned_cols=214  Identities=12%  Similarity=0.148  Sum_probs=130.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++.+|+++ +...++++++|++|.++|++|.+.+    +++|+++|++||+++|+|++|.. +..+.+     .+..
T Consensus       199 v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~-~~~~~p-----l~~g  268 (464)
T PLN02509        199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMS-PVLSRP-----LELG  268 (464)
T ss_pred             EEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCccc-cccCCh-----hhcC
Confidence            34567778887 5555678999999999999997654    99999999999999999999842 111221     1334


Q ss_pred             CCEEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|+++|. =.-.|.+.++ +.+.+.+...........++..+..++..++.+.  ...++.++++.++.+.|
T Consensus       269 aDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L  346 (464)
T PLN02509        269 ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYL  346 (464)
T ss_pred             CcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH
Confidence            67777  66999852 0225666654 3333332211011111235666655566666553  35677788888888888


Q ss_pred             HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548         159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-------  205 (242)
Q Consensus       159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-------  205 (242)
                       +..+..       ...         ...+.|.++.|.+.+. ..+..|.+.|.--.+.++          |.       
T Consensus       347 -~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~-~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~  424 (464)
T PLN02509        347 -SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV-ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASI  424 (464)
T ss_pred             -hcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCH-HHHHHHHHcCCcceEcccCCCCCceeeCCcccccccC
Confidence             655421       111         1124477888888432 445566666642111111          11       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                ..+.||++    ...|+.+.+++-|+++++
T Consensus       425 ~~~~~~~~Gi~~~liRlS----vGlE~~~DLi~Dl~~Al~  460 (464)
T PLN02509        425 PAEVREARGLTEDLVRIS----AGIEDVDDLISDLDIAFR  460 (464)
T ss_pred             CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHc
Confidence                      24689999    444577778887777764

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.51  E-value=4.7e-13  Score=113.56  Aligned_cols=214  Identities=14%  Similarity=0.074  Sum_probs=128.7

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      ++.+|.+. +...++++++|++|.+.|++|.+.+    +++|+++|++||+++++|++|+.    +  ..+.-.....|+
T Consensus       131 v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~----p--~~~~Pl~~GaDi  200 (394)
T PRK09028        131 YDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS----P--INSRPFEMGVDI  200 (394)
T ss_pred             ECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccccCceE
Confidence            44455555 5455678999999999999987654    99999999999999999999952    1  111122345688


Q ss_pred             EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ++  .+|+++|  . .-.|+++.+++..+.+...........+|..+......++.+.-  ..++..+++..+.+.| +.
T Consensus       201 vv~S~tK~l~Gh~d-~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~la~~L-~~  276 (394)
T PRK09028        201 SIQAATKYIVGHSD-VMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGV--RLAQHEKNALKVANWL-AT  276 (394)
T ss_pred             EEEeCCeEecCCCC-EEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHH-hc
Confidence            77  5699983  4 34566666676655554221111123455554444444443322  3466677788888888 55


Q ss_pred             cCCC-------CCC---------eEeeeceeEEEEecC-CchhHHHHHHHHHHCCcee----------ccC---------
Q psy6548         162 LSPD-------IVP---------VVRGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVT----------KPI---------  205 (242)
Q Consensus       162 l~~~-------~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~----------~~~---------  205 (242)
                      .+..       ...         ...+.|.++.|++.. +......|.+.|.--.+.+          .|.         
T Consensus       277 ~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~~~  356 (394)
T PRK09028        277 RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGINKLRTAT  356 (394)
T ss_pred             CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcCccCchh
Confidence            4421       111         112457789999963 2134556666664221111          110         


Q ss_pred             ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ----SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                          .++.+|++..    .|+.+.+++.|+++++...
T Consensus       357 ~~~~~~~liR~svG----lEd~~dLi~Dl~~Al~~~~  389 (394)
T PRK09028        357 NWDFSKPLIRLHIG----LEDVDDLIADLEAGFERYN  389 (394)
T ss_pred             hhcCCCCeEEEEeC----cCCHHHHHHHHHHHHHHHH
Confidence                2367999944    4566666666666666543

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.50  E-value=4.5e-13  Score=115.10  Aligned_cols=215  Identities=14%  Similarity=0.147  Sum_probs=130.1

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++.+|+++ +...++++++|++|+++|++|.+.+    +++|.++|++||+++|+|++|+.. ...     .......
T Consensus       126 ~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~~-~~~-----~p~~~ga  195 (425)
T PRK06084        126 RFAAHDDIAALEALIDERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVATP-VLC-----RPFEHGA  195 (425)
T ss_pred             EEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----ChhhcCC
Confidence            3466778888 5555567899999999999997775    899999999999999999999521 111     1123356


Q ss_pred             CEEE--eeccccC-CccchheeEeC-hhh-hhccC-CC--------------------------------CCCCCCCCCH
Q psy6548          84 DIVI--LGKALSG-GLYPISAVLAD-DEV-MGTLV-PG--------------------------------THGSTYGGNP  125 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~~g~~~~~-~~~-~~~l~-~~--------------------------------~~~~~~~~~~  125 (242)
                      |+++  ++|.++| | .++|.++.. +.. ..... ..                                ..+.....++
T Consensus       196 Divv~S~tK~l~G~g-~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~  274 (425)
T PRK06084        196 DIVVHSLTKYIGGHG-TSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSP  274 (425)
T ss_pred             CEEEECchhcccccc-cceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCH
Confidence            7776  7799984 4 666665543 221 00000 00                                0111223344


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eEee-eceeEEEEecCCchhH
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VVRG-KGLLNAIVLDKSILEV  188 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~~~-~~~~~~~~~~~~~~~~  188 (242)
                      ..+...+..++.+  +...++.++++..+.+.| +..+..       ...         ...+ .|.++.|++.......
T Consensus       275 ~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L-~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~  351 (425)
T PRK06084        275 FNAFLILQGLETL--ALRMERHTENALKVARYL-QQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAG  351 (425)
T ss_pred             HHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHH
Confidence            4444444334433  334677778888888888 655531       111         1123 4778889886542345


Q ss_pred             HHHHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         189 YDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       189 ~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..|.+.|.--.+.++          |.                 ..+.+|++    ...|+.+.+++.|+++++..
T Consensus       352 ~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~s----vGlEd~~dLi~dl~~Al~~~  423 (425)
T PRK06084        352 ARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLS----IGIEHIDDIIADLAQALDAS  423 (425)
T ss_pred             HHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence            567766642222111          10                 24689999    45567788888888887653

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.50  E-value=5.4e-13  Score=113.38  Aligned_cols=208  Identities=13%  Similarity=0.118  Sum_probs=126.9

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |++.  +.+.++++++|++|.++|++|.+++    +++|+++|++||+++|+|++|+ ++  ...+.     ....|+++
T Consensus       125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~--~~~~l-----~~GaDivv  193 (385)
T PRK08574        125 STEDIIEAIKEGRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPL--LYRPL-----RHGADFVV  193 (385)
T ss_pred             CHHHHHHhcCccCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc--cCChh-----hhCCcEEE
Confidence            4555  4444448999999999999997776    8899999999999999999994 22  11111     12346666


Q ss_pred             --eeccccCCccc-hheeE-eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          88 --LGKALSGGLYP-ISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        88 --~sK~~~~g~~~-~g~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                        ++|+++|.--. .|+++ .++++.+.+...........++..+..++..++.+..  ..++..+++..+.+.| +..+
T Consensus       194 ~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L-~~~p  270 (385)
T PRK08574        194 HSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFL-SEHP  270 (385)
T ss_pred             eeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHH-HcCC
Confidence              77999852022 45444 4677777665322222234456655555555554432  4566667888888888 5544


Q ss_pred             C-------CCCCe---------E--eeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548         164 P-------DIVPV---------V--RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI----------  205 (242)
Q Consensus       164 ~-------~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~----------  205 (242)
                      .       +....         .  .+.|.++.|++......+..|.+.|.=-.+.++          |.          
T Consensus       271 ~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~  350 (385)
T PRK08574        271 KVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEE  350 (385)
T ss_pred             CcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCCCcCCcccCCHH
Confidence            2       11111         1  135778899986432445666666642221111          10          


Q ss_pred             -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 -------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                             .++.+|++    ...|+.+.+++-|+++++.
T Consensus       351 ~~~~~gi~~~liR~s----vGlE~~~dli~dl~~al~~  384 (385)
T PRK08574        351 DRKALGITEDLVRLS----VGLEDVEDLIEDLDQALGS  384 (385)
T ss_pred             HHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhc
Confidence                   14689999    4456677788888777754

>KOG2862|consensus

Probab=99.48  E-value=3.2e-12  Score=101.44  Aligned_cols=211  Identities=16%  Similarity=0.156  Sum_probs=149.1

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      +.+..+++.++++....+.+|-..+   .+....++|++|++++++|.+-+ +  .|..|.++.|++  |+..  --|++
T Consensus       136 ~~lsqh~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV--DvaytgSQKaL  207 (385)
T KOG2862|consen  136 EKLSQHKPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV--DVAYTGSQKAL  207 (385)
T ss_pred             HHHHhcCCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc--cEEEecchhhc
Confidence            5566789999999999999995444   47778899999999999999876 3  445678888877  5444  33999


Q ss_pred             cCCccchheeEeChhhhhccCCCCC-----------------------CCCCCCCHHHHHHHHHHHHHHHhc---cHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILEE---NMIEN  146 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~  146 (242)
                      +++ -+++.+..++...+.++....                       .+..+.+.-.+.+.+++|..+-++   +..++
T Consensus       208 ~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~r  286 (385)
T KOG2862|consen  208 GAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRR  286 (385)
T ss_pred             CCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            966 667778888888888764311                       011133344566667777766554   45677


Q ss_pred             HHHHHHHHHHHHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-Cceec----cCCCCEEEEec-cCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTK----PISNNIIRLSP-ALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~----~~~~~~lR~~~-~~~~  218 (242)
                      .+++.++++..| +.++..  ...+....-....+.++.. .|..+++.+++.+ ++.+.    +..+..+||.+ ....
T Consensus       287 H~e~s~~l~~~l-~~~GLq~fv~~e~~rlptvttv~vp~g-vDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna  364 (385)
T KOG2862|consen  287 HREMSKWLKLSL-EALGLQLFVVDEELRLPTVTTVKVPYG-VDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNA  364 (385)
T ss_pred             HHHHHHHHHHHH-HHhCccceecChhhccCcceeeecCCC-CCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccC
Confidence            778899999999 776532  1222222333445666665 7899999999998 44443    33578999975 3445


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTINT  236 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~  236 (242)
                      +.|.|+..++.|..++++
T Consensus       365 ~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  365 NVEYIDNVVELLKLALQR  382 (385)
T ss_pred             CcHHHHHHHHHHHHHHhh
Confidence            778999999999888876

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.48  E-value=1e-12  Score=112.03  Aligned_cols=213  Identities=16%  Similarity=0.132  Sum_probs=127.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++|.++|++|.+.+    +++|.++|+++|+++|+|++|..+. ...+  .   ...
T Consensus       120 v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~-~~~~--~---~~g  189 (390)
T PRK08064        120 HTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPL-LQKP--L---DLG  189 (390)
T ss_pred             EEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCccc-ccCc--h---hhC
Confidence            44567777887 5555668999999999999997765    8999999999999999999985321 1111  1   223


Q ss_pred             CCEEE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|.++|.- .-.|+++. ++++++.+.+....+....++.....+...++.+  +...++..+++..+.+.|
T Consensus       190 ~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L  267 (390)
T PRK08064        190 ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYL  267 (390)
T ss_pred             CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHH
Confidence            57766  679997430 22465555 4677777765333333333333333222223322  223455566666777777


Q ss_pred             HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCce---eccC--------------
Q psy6548         159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLV---TKPI--------------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~---~~~~--------------  205 (242)
                       +..+.       ....         ...+.|.++.|++.+. .+...|.+.+   ++.   ++.+              
T Consensus       268 -~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~-~~~~~f~~~l---~l~~~~~s~G~~~sl~~~~~~~~h  342 (390)
T PRK08064        268 -QEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE-EAVRQFVSHV---KLPVFAVSLGAVESILSYPAKMSH  342 (390)
T ss_pred             -hcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-HHHHHHHHhC---CcceEcccCCCCcceeECCccccc
Confidence             54432       1110         1234577888988643 3344444443   431   1100              


Q ss_pred             -------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 -------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 -------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                   ..+.+|+|+.+..+++.++.+.++|+++
T Consensus       343 ~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        343 AAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence                         2578999988887777777777777653

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.47  E-value=7.9e-13  Score=111.41  Aligned_cols=180  Identities=13%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++++++.+++++|.+.+    +++|.++|++||+++++|++|. ++..  ....+  ....|++++|
T Consensus       127 d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~D~~~~s  197 (353)
T TIGR03235       127 DVDELADAIRPDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI--TVDLS--ADRIDLISCS  197 (353)
T ss_pred             CHHHHHHhCCCCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc--ccccc--ccCCCEEEee
Confidence            4555 4444567899999999999998876    8999999999999999999986 2222  12222  2346888866


Q ss_pred             --ccccCCccchheeEeChhhhhc--cCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGT--LVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRS  156 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~--l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~  156 (242)
                        |+++ + .++|+++.+++....  +.+...+       ...+.+.....+..++++.+..  ++..++++++.+.+++
T Consensus       198 ~~K~~g-p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~  275 (353)
T TIGR03235       198 GHKIYG-P-KGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRD  275 (353)
T ss_pred             hhhcCC-C-CceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence              9865 3 457888888764322  2321111       1223445555566667776643  3567888888888888


Q ss_pred             HHHhhcCCCCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC
Q psy6548         157 ELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI  205 (242)
Q Consensus       157 ~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  205 (242)
                      .| +..+-...... .....++.+.++.  .+.+++.++|. ++|.++++
T Consensus       276 ~l-~~~g~~~~~~~~~~~~~i~~~~~~~--~~~~~v~~~L~-~~i~v~~g  321 (353)
T TIGR03235       276 AL-QTLGVKLNGDPAETIPHILNFSIDG--VNSEALIVNLR-ADAAVSTG  321 (353)
T ss_pred             Hh-ccCCeEEeCCcccccCCEEEEEeCC--cCHHHHHHHHh-CCeEEEch
Confidence            88 55432111111 1123345555544  46788888885 48888765

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.46  E-value=8.9e-12  Score=105.07  Aligned_cols=200  Identities=13%  Similarity=0.045  Sum_probs=133.6

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCC
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGG   95 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g   95 (242)
                      ...++++++|.+....+.+|...+         ++++.||+++++|.+++ +|  +.+..++.++  ..+...-|.+| +
T Consensus       133 ~~~~~~~~lV~~~h~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P  197 (355)
T cd00611         133 WDLAPDAAYVHYCSNETIHGVEFD---------EVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-P  197 (355)
T ss_pred             cCCCCCCCEEEEeCCcccccEEcc---------eecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-C
Confidence            344678999999999999997543         45566999999999996 22  2223333333  12222349886 5


Q ss_pred             ccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELR  159 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~  159 (242)
                       .++|+++.++++.+++.+..           ...++ +.|.....+..++++.+...    .+.++.+++.+++++.| 
T Consensus       198 -~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l-  275 (355)
T cd00611         198 -AGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTI-  275 (355)
T ss_pred             -CceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-
Confidence             67899999999888766531           01112 33445666667788887654    35677788999999999 


Q ss_pred             hhcCCC--CCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         160 SRLSPD--IVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       160 ~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ++++.-  ........+ ..+.|.++.. ....++.+.+.++|++..++.  .+.+|+++..++|+|||+++++.|+++
T Consensus       276 ~~~~gl~~~~~~~~~rs~~vvsf~~~~~-~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         276 DNSNGFYRGPVDKRARSRMNVPFRLGKE-ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             HhCccccccCCCHHHcCceEEEEEcCCh-hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            777321  111111123 4577776653 233566678889999854442  478999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.46  E-value=2e-11  Score=103.58  Aligned_cols=203  Identities=13%  Similarity=0.178  Sum_probs=126.8

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC-ccCcccccccCCCCCCEEEee----
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKLLAIHYEDVRPDIVILG----   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~~s----   89 (242)
                      +...++++++|+  |+ +++|...+    +++|.++|++||+++|+|++|+-.. ..|.     ..+...++.+||    
T Consensus       113 e~~i~~~tk~Ii--p~-~~~G~~~d----~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-----~~g~~~~~~~fSf~~~  180 (376)
T TIGR02379       113 ESAITHRTKAIV--PV-HYAGVACD----MDTIMALANKHQLFVIEDAAQGVMSTYKGR-----ALGSIGHLGTFSFHET  180 (376)
T ss_pred             HHhcCcCceEEE--Ee-CCCCCccC----HHHHHHHHHHCCCEEEEECccccCCccCCc-----ccCCCCCEEEEeCCCC
Confidence            444456788886  33 34665554    8899999999999999999996321 1121     223344788888    


Q ss_pred             ccccCCccchheeEeC-hhhhhccCCCC---------------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          90 KALSGGLYPISAVLAD-DEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        90 K~~~~g~~~~g~~~~~-~~~~~~l~~~~---------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                      |.+..| .+.|+++.+ ++++++++...                     .++++..+.+.++.+++.++.+  +++.+..
T Consensus       181 K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r  257 (376)
T TIGR02379       181 KNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDR  257 (376)
T ss_pred             CcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHH
Confidence            988866 578887765 67777665321                     1223334445555555555544  3355666


Q ss_pred             HHHHHHHHHHHHhhcCC-C---CC---CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----C----------
Q psy6548         148 YKMGEIFRSELRSRLSP-D---IV---PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----S----------  206 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~----------  206 (242)
                      +++.++..+.| +.+.. .   ..   ........++++.++.. .+.+++.++|.++||.+++.    .          
T Consensus       258 ~~~~~~y~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~  335 (376)
T TIGR02379       258 LATWQLYQDAL-KPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE-DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGR  335 (376)
T ss_pred             HHHHHHHHHHh-ccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCC
Confidence            67777777777 54431 0   11   11111223445666543 46789999999999987621    0          


Q ss_pred             ------------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         207 ------------NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       207 ------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                  ...+.+=++...+++|+++.++.|++.+
T Consensus       336 ~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       336 FHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             CCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                        1245555567789999999999998754

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.46  E-value=9.6e-12  Score=114.84  Aligned_cols=206  Identities=14%  Similarity=0.153  Sum_probs=139.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh---h-----CCEEEEeccccccCccCcccccccCCCCCCEEEee--
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---Y-----NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--   89 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~---~-----~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--   89 (242)
                      +++++|.+..+.|.+|.+.|    ++++..+++.   +     ++++++|.+|+ ++..  +.  +...+.+|++++|  
T Consensus       191 ~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~--pi--Dv~~~~~Dfl~~S~H  261 (805)
T PLN02724        191 EAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS--PP--DLSRYPADFVVVSFY  261 (805)
T ss_pred             CCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC--CC--ChhhcCCCEEEEecc
Confidence            46789999999999998888    5544444432   2     36799999995 2211  12  2223467998876  


Q ss_pred             ccccCCccchheeEeChhhhhccCCCCCCC-C---------C--------------CCCHHHHHHHHHHHHHHHh---cc
Q psy6548          90 KALSGGLYPISAVLADDEVMGTLVPGTHGS-T---------Y--------------GGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-~---------~--------------~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                      |++|++ .++|+++.++++.+.+.+...++ +         +              +.|..+.++..++++.+..   +.
T Consensus       262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~  340 (805)
T PLN02724        262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISA  340 (805)
T ss_pred             eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHH
Confidence            999866 67999999988887777643332 1         0              2345566666677887765   45


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--C-----CCCe------EeeeceeEEEEecCCc---hhHHHHHHHHHHCCceeccC-
Q psy6548         143 MIENAYKMGEIFRSELRSRLSP--D-----IVPV------VRGKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTKPI-  205 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~--~-----~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~-  205 (242)
                      +.++.+++.+++.+.| +.+..  +     +...      ....+.++.|.+....   ....++...+-+.||.++.+ 
T Consensus       341 I~~~~~~L~~~l~~~L-~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~  419 (805)
T PLN02724        341 IAMHTWALTHYVANSL-RNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC  419 (805)
T ss_pred             HHHHHHHHHHHHHHHH-HhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence            7788999999999999 76642  1     1110      1235667777776531   11333444445678888532 


Q ss_pred             --------------------------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 --------------------------------------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 --------------------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                                            ..+.+|+|+++++|.+|++++++.|++....
T Consensus       420 ~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~  488 (805)
T PLN02724        420 FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVS  488 (805)
T ss_pred             ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhc
Confidence                                                  0277999999999999999999999986643

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.45  E-value=1.2e-12  Score=106.23  Aligned_cols=206  Identities=16%  Similarity=0.143  Sum_probs=130.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVI--LGKALSGG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g   95 (242)
                      ..+..++.+..++.+| .+++.++|++|.++|++||+.|..|.+--.  ....+  .....+.-..|.++  +||+.+  
T Consensus       129 ~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~--  203 (342)
T COG2008         129 APTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGG--  203 (342)
T ss_pred             CCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCc--
Confidence            4677888888888777 566778899999999999999999987632  11122  11122223457666  668777  


Q ss_pred             ccchhe-eEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          96 LYPISA-VLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        96 ~~~~g~-~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                       ++.|. ++++.++++.+...  ..++-++-..+..+....+|+..--.....+..+++++|.+.+ ...+. .....+.
T Consensus       204 -~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~-~~~~G-~~~~~~~  280 (342)
T COG2008         204 -APVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGL-EAKPG-VKLAFPV  280 (342)
T ss_pred             -ceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh-hhcCC-ceeccCC
Confidence             45565 45788887766532  2444444444444444444442111112233444488888888 53321 2222336


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ..+++.+.+++...+.......+...|++..+.+ ..+||..|...+++++++++..+++..
T Consensus       281 ~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         281 ETNMVFVRLPESAIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             cccEEEEECChHHHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            6788898888753334445555556666665543 579999999999999999999887653

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.45  E-value=1.3e-12  Score=112.30  Aligned_cols=92  Identities=22%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++|+++|++|.+.+    +++|+++|++||+++|+|++|... .     ........
T Consensus       124 v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~~-~-----~~~~l~~g  193 (418)
T TIGR01326       124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFATP-Y-----LCRPIDHG  193 (418)
T ss_pred             EEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCchh-h-----cCCchhcC
Confidence            44567778888 5555668899999999999997665    899999999999999999998521 1     11112234


Q ss_pred             CCEEE--eeccccC-CccchheeEeCh
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLADD  106 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~~~  106 (242)
                      .|+++  ++|++++ | .++|+++.++
T Consensus       194 ~Divv~S~sK~l~g~G-~~lGg~v~~~  219 (418)
T TIGR01326       194 ADIVVHSATKYIGGHG-TAIGGVIVDG  219 (418)
T ss_pred             CeEEEECccccccCCc-cceEEEEEec
Confidence            67776  7899994 8 8999988754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.45  E-value=2e-12  Score=110.19  Aligned_cols=214  Identities=15%  Similarity=0.085  Sum_probs=126.8

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      ++-.+.++ +...++++++|++|.+.|++|...    .+++|+++|++||+++|+|++|..    +..  ........|+
T Consensus       135 vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~----di~~I~~ia~~~gi~livD~a~a~----~~~--~~~l~~GaDi  204 (394)
T PRK07050        135 YDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP----DVPAITAAARARGVVTAIDNTYSA----GLA--FKPFEHGVDI  204 (394)
T ss_pred             ECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh----hHHHHHHHHHHcCCEEEEECCccc----ccc--cCHHHcCCeE
Confidence            33334454 555567899999999999887444    499999999999999999999952    111  1111223466


Q ss_pred             EE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 VI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 ~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ++  ++|.++|+. .+.|+++. ++++++.++........+.++.....++..++.+.  ...++..+++..+.+.| +.
T Consensus       205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L-~~  281 (394)
T PRK07050        205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWL-KA  281 (394)
T ss_pred             EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHH-Hh
Confidence            65  789998540 34676665 57777766543221122344444333322222222  13455556666777777 44


Q ss_pred             cCC-------CCCC---------eEeeeceeEEEEecCC--chhHHHHHHHHHHCCceeccC------------------
Q psy6548         162 LSP-------DIVP---------VVRGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVTKPI------------------  205 (242)
Q Consensus       162 l~~-------~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~------------------  205 (242)
                      .+.       ....         ...+.|.++.|.+...  ..+..+|.+.|...++.++-+                  
T Consensus       282 ~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~  361 (394)
T PRK07050        282 RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAK  361 (394)
T ss_pred             CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhh
Confidence            332       1110         1123466778888652  256777888887666544322                  


Q ss_pred             ---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 ---SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 ---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                         .++.+|+++    ..|+.+.+++.|++++...
T Consensus       362 ~~~~~~~iR~sv----GlE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        362 WPHRGTLVRLYI----GLEDEADLIADLEQALEAA  392 (394)
T ss_pred             cCCCCCEEEEEe----CcCCHHHHHHHHHHHHHHh
Confidence               125799994    4456677777777776653

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.44  E-value=2.2e-11  Score=103.42  Aligned_cols=207  Identities=17%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-cCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+.++++|++.+   ++|...+    +++|.++|++||+++|+|++|+-... .+..     .+-..|+.+|
T Consensus       108 d~~~le~~i~~~tk~i~~~~---~~G~~~~----~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~-----~g~~~~~~~~  175 (375)
T PRK11706        108 DETLIEAAITPKTRAIVPVH---YAGVACE----MDTIMALAKKHNLFVVEDAAQGVMSTYKGRA-----LGTIGHIGCF  175 (375)
T ss_pred             CHHHHHHhcCCCCeEEEEeC---CCCCccC----HHHHHHHHHHcCCEEEEECccccccccCCee-----eecCcCEEEE
Confidence            4555 444455788887643   4665443    89999999999999999999963221 1211     1223477777


Q ss_pred             e----ccccCCccchheeEeChhhhhccCCCC---------------------CCCCCCCCHHHHHHHHHHHHHHHhccH
Q psy6548          89 G----KALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALDVILEENM  143 (242)
Q Consensus        89 s----K~~~~g~~~~g~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~  143 (242)
                      |    |.+++| .+.+++..++++.++++...                     .++++..+.+..+.+.+.++.+  +..
T Consensus       176 Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~  252 (375)
T PRK11706        176 SFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRI  252 (375)
T ss_pred             eCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHH
Confidence            7    999866 66667776777776443211                     1122222334444444444433  345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-C-C--CCeE---eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------
Q psy6548         144 IENAYKMGEIFRSELRSRLSP-D-I--VPVV---RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------  205 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~-~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------  205 (242)
                      .++.+++.+.+++.| +.++. + .  ....   .....++++.++.. .+..++.+.|.++||.++..           
T Consensus       253 ~~~R~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~  330 (375)
T PRK11706        253 NQRRLALWQRYYDAL-APLAEAGRIELPSIPDDCKHNAHMFYIKLRDL-EDRSALINFLKEAGIMAVFHYIPLHSSPAGE  330 (375)
T ss_pred             HHHHHHHHHHHHHHh-cCCCcCCeeecCCCCCCCceeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCCccCcchhhH
Confidence            566777778888888 65541 1 1  1111   12344556666554 46889999999999986411           


Q ss_pred             ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                     ....+.+=++...+++|++..++.|++.+
T Consensus       331 ~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        331 RFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             hcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence                           11234444455678999999999988754

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.43  E-value=3.1e-12  Score=110.09  Aligned_cols=217  Identities=16%  Similarity=0.192  Sum_probs=128.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|..|+++ +...++++++|+++.+.|++|.+.+    +++|.++|++||+++|+|+++..    +..  .......
T Consensus       131 v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~----~~~--~~pl~~g  200 (431)
T PRK08248        131 VKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS----PYL--LRPIEHG  200 (431)
T ss_pred             EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc----ccc--CChhHcC
Confidence            45567778888 5555568999999999999997776    88999999999999999999851    111  1111235


Q ss_pred             CCEEE--eeccccC-CccchheeEe-Chhhh-h---c---cCC--------------------------CCCCCCCCCCH
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLA-DDEVM-G---T---LVP--------------------------GTHGSTYGGNP  125 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~-~~~~~-~---~---l~~--------------------------~~~~~~~~~~~  125 (242)
                      .|+++  ++|.++| | .++|+++. +.+.. .   .   +..                          .........+|
T Consensus       201 aDivv~S~tK~lgg~g-~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p  279 (431)
T PRK08248        201 ADIVVHSATKFIGGHG-TSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSP  279 (431)
T ss_pred             CCEEEEcCccccCCCC-CceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCH
Confidence            67776  6699994 5 56777655 32210 0   0   000                          00000012233


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eE-eeeceeEEEEecCCchhH
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VV-RGKGLLNAIVLDKSILEV  188 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~-~~~~~~~~~~~~~~~~~~  188 (242)
                      ..+......++.+  +...++..+++..+.+.| +..+..       ...         .. .+.|.++.|++......+
T Consensus       280 ~~a~l~~rgl~tl--~~R~~~~~~nA~~la~~L-~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~  356 (431)
T PRK08248        280 FNSFLLLQGLETL--HLRMERHSENALAVAKFL-EEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAG  356 (431)
T ss_pred             HHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHH
Confidence            3332222223322  224566777888899999 655431       111         01 245778899986542445


Q ss_pred             HHHHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         189 YDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       189 ~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ..|.+.|.--.+.++          |.                 .++.+|++    ...|+.+.+++-|+++++..+
T Consensus       357 ~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        357 KKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLS----VGTEAIDDILDDLRQAIRQSQ  429 (431)
T ss_pred             HHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence            567666642221211          10                 24689999    455677888888888887643

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.42  E-value=3.5e-12  Score=108.16  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=126.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++..|+++ +...++++++|++|.++|++|...+    +++|.++|+++|+++|+|++|... ....+     ....
T Consensus       116 v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~-~~~~p-----~~~g  185 (377)
T PRK07671        116 HTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP-YWQSP-----ISLG  185 (377)
T ss_pred             EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-ccCCh-----hhhC
Confidence            34556667777 5555668999999999999996654    999999999999999999998531 11111     1234


Q ss_pred             CCEEE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .|+++  ++|+++|.- .-.|++++ ++++++.+...........++..+..++..++.+..  ..+..+++...+.+.|
T Consensus       186 ~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L  263 (377)
T PRK07671        186 ADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFL  263 (377)
T ss_pred             CeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHH
Confidence            46666  779998430 12454554 466766665322221223344444333333333322  3566667888888888


Q ss_pred             HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC-------
Q psy6548         159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI-------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~-------  205 (242)
                       +..+.       ....         ...+.|.++.|++.+ ...+..|.+.|.=  .+.-+        .|.       
T Consensus       264 -~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~  341 (377)
T PRK07671        264 -NNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGS-EETANKVLERLQYFTLAESLGAVESLISIPSQMTHASI  341 (377)
T ss_pred             -HcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCC-HHHHHHHHHhCCcceEccCCCCCCeEeECCCccccccC
Confidence             54432       1101         112457788888843 2445566666641  11111        111       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                .++.+|++    ...|+.+.+++-|++++
T Consensus       342 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al  376 (377)
T PRK07671        342 PADRRKELGITDGLIRIS----VGIEDGEDLIEDLAQAL  376 (377)
T ss_pred             CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHh
Confidence                      24689999    34456777777777665

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.42  E-value=4.5e-12  Score=107.49  Aligned_cols=213  Identities=14%  Similarity=0.051  Sum_probs=126.2

Q ss_pred             cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      ++.++.+. +...++++++|++|.+.|+++.+.+    +++|+++|++||+++++|+++...      ..+.......|+
T Consensus       134 vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~~GaDi  203 (395)
T PRK05967        134 YDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP------LYFRPLDFGVDI  203 (395)
T ss_pred             eCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc------eecChhHcCCCE
Confidence            44444455 5555668999999999998875554    999999999999999999998631      111222345677


Q ss_pred             EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ++  .+|.++|  . .-+|++..+++..+.+...........+|..+......++.+.-  ..++..+++..+.+.| +.
T Consensus       204 vv~S~tKy~~Gh~d-~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l--R~~~~~~na~~lA~~L-~~  279 (395)
T PRK05967        204 SIHAATKYPSGHSD-ILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI--RLEHHRKSALEIARWL-EG  279 (395)
T ss_pred             EEEecccccCCCCC-eeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH--HHHHHHHHHHHHHHHH-Hh
Confidence            76  7799884  4 44666777776655554211111113445544433333443322  2455566777777888 54


Q ss_pred             cCCC-------CCC---------eEeeeceeEEEEecCC----chhHHHHHHHHHHCCceecc-----------------
Q psy6548         162 LSPD-------IVP---------VVRGKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKP-----------------  204 (242)
Q Consensus       162 l~~~-------~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~-----------------  204 (242)
                      .+..       ...         ...+.|.++.|++...    ...+..|.+.|.--.+.++-                 
T Consensus       280 hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~~~~~~  359 (395)
T PRK05967        280 RPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKLGDRTV  359 (395)
T ss_pred             CCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeCCCChhHh
Confidence            4421       111         1124577889999642    13455666666421111111                 


Q ss_pred             ----CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 ----ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 ----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                          ..++.+|++    ...|+.+.+++-|+++++..
T Consensus       360 ~~~~~~~~liRlS----vGlEd~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        360 AKAPYAGPVIRLQ----IGLEDVPDLKADLERGFAAA  392 (395)
T ss_pred             hhccCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence                123579999    34456777777777777654

>PRK05939 hypothetical protein; Provisional

Probab=99.40  E-value=3.1e-12  Score=109.09  Aligned_cols=211  Identities=17%  Similarity=0.235  Sum_probs=123.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|..|+++ +...++++++|++|.++|++|.+.+    +++|+++|++||+++|+|++|..    +.  .++.....
T Consensus       113 v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~--~~~~~~~g  182 (397)
T PRK05939        113 VTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PW--LFRPKDVG  182 (397)
T ss_pred             EEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----cc--ccCccccC
Confidence            44566677888 5555678999999999999997754    99999999999999999999841    11  11111224


Q ss_pred             CCEEE--eeccccC-CccchheeEeChhhhhc----------------------cCCC---CCCCCCCCCHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLADDEVMGT----------------------LVPG---THGSTYGGNPLACKLAMTA  134 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~----------------------l~~~---~~~~~~~~~~~~~~~a~a~  134 (242)
                      .|+++  ++|.++| | ..+|+++..+.....                      ++..   ..+.  ..+|..+......
T Consensus       183 aDivv~S~sK~~~g~g-~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~p~~a~l~~rg  259 (397)
T PRK05939        183 ASLVINSLSKYIAGHG-NALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA--TLSSEAAHRIAIG  259 (397)
T ss_pred             CEEEEecCeecccCCC-CeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHcC
Confidence            56665  7899995 6 777877654221100                      0000   0111  1233332222222


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH-
Q psy6548         135 LDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD-  197 (242)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  197 (242)
                      ++.+.  -..++..+++..+.+.| +..+..       ...         ...+.|.++.|++.+. .....|.+.|.- 
T Consensus       260 l~tl~--~R~~~~~~na~~la~~L-~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~-~~~~~f~~~l~l~  335 (397)
T PRK05939        260 AETLA--LRVDRSCSNALALAQFL-EAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-IDCFDFLNRLKLV  335 (397)
T ss_pred             cCcHH--HHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH-HHHHHHHHhCCcc
Confidence            33222  12344555777888888 554421       111         1135578889998754 445566665532 


Q ss_pred             -CCcee--------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         198 -AGLVT--------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       198 -~gi~~--------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                       .+.-+        .|.                 .++.+|++    ...|+.+.+++.|+++++
T Consensus       336 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~s----vGlEd~~dLi~dl~~Al~  395 (397)
T PRK05939        336 IKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVS----VGIEDEADLIADFEQALD  395 (397)
T ss_pred             eEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEE----eCCCCHHHHHHHHHHHHh
Confidence             11111        110                 24689999    344577778887777775

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.39  E-value=7.6e-12  Score=106.20  Aligned_cols=213  Identities=15%  Similarity=0.099  Sum_probs=122.4

Q ss_pred             ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      .++-.|++. +...++++++|++|.++|++|.+.+    +++|.++|++||+++|+|++|+.. ....+     .+...|
T Consensus       118 ~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~p-----~~~gaD  187 (380)
T PRK06176        118 IIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQNP-----LLLGAD  187 (380)
T ss_pred             EcCCCCHHHHHHhcCcCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCCc-----cccCCC
Confidence            455567777 5555668999999999999997665    899999999999999999999632 11111     133567


Q ss_pred             EEE--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          85 IVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        85 ~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +++  ++|.++|.- .-.|+++++ +++.+++...........++.........++.+.  -..++..++...+.+.| +
T Consensus       188 ivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--~R~~~~~~~a~~la~~L-~  264 (380)
T PRK06176        188 IVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--LRMEAHQKNALCVAEFL-E  264 (380)
T ss_pred             EEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHH-H
Confidence            777  559998420 124556654 5555555432111111123333222222232221  12344445566666666 4


Q ss_pred             hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548         161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------  205 (242)
Q Consensus       161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------  205 (242)
                      ..+.       ....         ...+.|.++.|++... ..+..|.+.|.--.+.++          |.         
T Consensus       265 ~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~  343 (380)
T PRK06176        265 KHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND-SEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPK  343 (380)
T ss_pred             hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH-HHHHHHHHcCCcceEccCCCCCCceeeCCcccccccCCH
Confidence            3321       1111         1224577889998753 455566665532111111          11         


Q ss_pred             --------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 --------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 --------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                              ..+.+|++    ...|+.+.+++-|+++++.
T Consensus       344 ~~~~~~gi~~~liR~s----vGlE~~~dli~dl~~Al~~  378 (380)
T PRK06176        344 EQREAAGIRDGLVRLS----VGIEHEQDLLEDLEQAFAK  378 (380)
T ss_pred             HHHHhcCCCcCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence                    24689999    4556778888888877764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.38  E-value=1.2e-11  Score=106.34  Aligned_cols=212  Identities=17%  Similarity=0.182  Sum_probs=123.4

Q ss_pred             CCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548           9 SKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus         9 ~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .+|++. +...++++++|++|.+.|++|.+.+    +++|+++|++||+++|+|+++..    +..  ........|+++
T Consensus       142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~----~~~--~~pl~~GaDivv  211 (436)
T PRK07812        142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT----PYL--IRPLEHGADIVV  211 (436)
T ss_pred             CCCHHHHHHhCCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc----ccc--CCchhcCCCEEE
Confidence            356666 5555678999999999999998887    99999999999999999999851    111  111223567766


Q ss_pred             --eeccccC-CccchheeEe-Chhhh--hc----------------------------cCC-CCCCCCCCCCHHHHHHHH
Q psy6548          88 --LGKALSG-GLYPISAVLA-DDEVM--GT----------------------------LVP-GTHGSTYGGNPLACKLAM  132 (242)
Q Consensus        88 --~sK~~~~-g~~~~g~~~~-~~~~~--~~----------------------------l~~-~~~~~~~~~~~~~~~~a~  132 (242)
                        ++|.++| | -.+|.++. +....  ..                            .+. .........+|..+...+
T Consensus       212 ~S~tK~lgg~G-~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~  290 (436)
T PRK07812        212 HSATKYLGGHG-TAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIA  290 (436)
T ss_pred             EecccccCCCC-CeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence              6699983 2 12444333 22110  00                            000 000001123333333222


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eE-eeeceeEEEEecCCchhHHHHHHHH
Q psy6548         133 TALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VV-RGKGLLNAIVLDKSILEVYDVCIKM  195 (242)
Q Consensus       133 a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~l  195 (242)
                      ..++.+  +...++..+++..+.+.| +..+..       ...         .. .+.|.++.|++..+...+..|.+.|
T Consensus       291 rgl~tL--~~R~~~~~~nA~~la~~L-~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l  367 (436)
T PRK07812        291 QGLETL--SLRIERHVANAQRVAEFL-EARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNAL  367 (436)
T ss_pred             cCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhC
Confidence            223322  234567778888888888 655421       111         01 3457788999865424466777776


Q ss_pred             HHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         196 KDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       196 ~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .--....+          |.                 ..+.+|++    ...|+.+.+++.|+++++..+
T Consensus       368 ~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlS----vGlEd~~dli~dl~~Al~~~~  433 (436)
T PRK07812        368 TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLA----VGIEGIDDILADLEAGFAAAK  433 (436)
T ss_pred             CcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence            43222221          10                 24689999    455677888888888887654

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.37  E-value=2.3e-11  Score=104.79  Aligned_cols=214  Identities=14%  Similarity=0.180  Sum_probs=124.1

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++-+|+++ +...++++++|++|+++|++|.+++    +++|+++|++||+++|+|++|+.    +  .........+
T Consensus       131 ~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~--~~~~pl~~ga  200 (427)
T PRK05994        131 RWADADDPASFERAITPRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----P--YLIRPIEHGA  200 (427)
T ss_pred             EEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccccCC
Confidence            3455567777 5555668999999999999997776    89999999999999999999952    1  1112224567


Q ss_pred             CEEE--eeccccCCccchheeEe-Chh-----------------------hhhccC-------C---CCCCCCCCCCHHH
Q psy6548          84 DIVI--LGKALSGGLYPISAVLA-DDE-----------------------VMGTLV-------P---GTHGSTYGGNPLA  127 (242)
Q Consensus        84 ~~~~--~sK~~~~g~~~~g~~~~-~~~-----------------------~~~~l~-------~---~~~~~~~~~~~~~  127 (242)
                      |+++  ++|.++|.--.+|.++. ...                       +.+.+.       .   .........++..
T Consensus       201 Divv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  280 (427)
T PRK05994        201 DIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFN  280 (427)
T ss_pred             cEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHH
Confidence            8777  67999842023443333 111                       000000       0   0000111234444


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------e-EeeeceeEEEEecCCchhHHH
Q psy6548         128 CKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------V-VRGKGLLNAIVLDKSILEVYD  190 (242)
Q Consensus       128 ~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~-~~~~~~~~~~~~~~~~~~~~~  190 (242)
                      +...+..++.+  +...++.++++..+.+.| +..+..       ...         . ..+.|.++.|++.........
T Consensus       281 A~l~~~~l~tL--~~r~~~~~~~a~~la~~L-~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~  357 (427)
T PRK05994        281 AFLILTGIETL--PLRMQRHSDNALAVAEWL-KGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVK  357 (427)
T ss_pred             HHHHHcCcccH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHH
Confidence            44433334333  334577778888888888 655531       101         0 134577888988643234556


Q ss_pred             HHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         191 VCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       191 ~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      |.+.|.--.+.++          |.                 ..+.+|++    ...|+.+.+++.|+++++
T Consensus       358 ~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlE~~~dli~dl~~Al~  425 (427)
T PRK05994        358 LVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLS----IGIEDVDDIIADLEQALA  425 (427)
T ss_pred             HHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEE----eccCCHHHHHHHHHHHHh
Confidence            6666542222211          10                 14689999    344567777777777765

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.37  E-value=2.6e-11  Score=99.43  Aligned_cols=217  Identities=15%  Similarity=0.185  Sum_probs=126.7

Q ss_pred             Chhh--hcC-CCCCEEEEEEcccccCCCcccCCHHHHHHHHHH-HHhhCCEEEEeccccc--cC-ccCccc------ccc
Q psy6548          11 QVPA--KLK-SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFIADEVQTG--LG-RTGKLL------AIH   77 (242)
Q Consensus        11 d~~~--~~~-~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l-~~~~~~~li~De~~~~--~~-~~g~~~------~~~   77 (242)
                      |+|.  +.. .++.++.|++-|.++|..++..+++..++++++ +.+.+..|+.|.+|.=  +. .....-      ...
T Consensus       159 DmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~  238 (425)
T PF12897_consen  159 DMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACA  238 (425)
T ss_dssp             -HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHH
T ss_pred             CHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHH
Confidence            4555  333 478999999999877666688999999999999 4468999999999951  21 111100      001


Q ss_pred             cCCCCCC----EEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c-cHHHHHHHHH
Q psy6548          78 YEDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-E-NMIENAYKMG  151 (242)
Q Consensus        78 ~~~~~~~----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~-~~~~~~~~~~  151 (242)
                      ..| .||    +.+.||.--+| .+++++.++++-++.+.......+.+.+-+.|..-   .+.+.+ + ++.+++++.+
T Consensus       239 ~AG-npdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRH---vrff~d~~gGv~aHM~kHa  313 (425)
T PF12897_consen  239 KAG-NPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRH---VRFFKDAEGGVRAHMRKHA  313 (425)
T ss_dssp             HTT--TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHH---HHHHHSHHTHHHHHHHHHH
T ss_pred             HcC-CCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHHhcCceeCccHHHHHHH---HHHhcChhhHHHHHHHHHH
Confidence            112 344    33367966555 67999999988777777644444555555665432   234443 4 6777777766


Q ss_pred             HHHH-------HHHHhhcC-C-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----------CCEEE
Q psy6548         152 EIFR-------SELRSRLS-P-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----------NNIIR  211 (242)
Q Consensus       152 ~~l~-------~~l~~~l~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------~~~lR  211 (242)
                      ..++       +.|.++|+ . . ..+..+..|+|++++..+.  .+..+++.+.+.||.+++.|          ...||
T Consensus       314 ~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G--~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIR  391 (425)
T PF12897_consen  314 AILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG--TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIR  391 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT---HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEE
T ss_pred             HHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC--hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEE
Confidence            6555       44545555 2 2 2344566789999999885  89999999999999998752          45799


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         212 LSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++|++. +.||++.+++.+.-+.+
T Consensus       392 iAPS~P-~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  392 IAPSYP-SLEELETAMDVFATCVK  414 (425)
T ss_dssp             E--SSS--HHHHHHHHHHHHHHHH
T ss_pred             ecCCCC-CHHHHHHHHHHHHHHHH
Confidence            999987 89999999999876544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.37  E-value=1.5e-11  Score=104.29  Aligned_cols=217  Identities=14%  Similarity=0.051  Sum_probs=132.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      +..++..|.+. +...++++++|++|.+.|++|.+.+    +++|+++|+++|  +++++|.+++    .+.  .++...
T Consensus       129 v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~--~~~pl~  198 (395)
T PRK08114        129 TTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGV--LFKALD  198 (395)
T ss_pred             EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----ccc--ccCHHH
Confidence            44566777777 5555668999999999999998887    999999999985  9999999985    221  123334


Q ss_pred             CCCCEEE--eeccccCC-ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSGG-LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~g-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      +..|+++  .+|+++|. =..+|.++.+++.++.+...........+|..+......++.+.-  ..++..+++..+.+.
T Consensus       199 ~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~va~~  276 (395)
T PRK08114        199 FGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGV--RLRQHEESSLKVAEW  276 (395)
T ss_pred             cCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHH
Confidence            5678888  55999953 034666666766655444211111113344444333333333321  346667778888888


Q ss_pred             HHhhcCC-------CCCC---------eEeeeceeEEEEecCC--chhHHHHHHHHHHCCcee---------c---c---
Q psy6548         158 LRSRLSP-------DIVP---------VVRGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVT---------K---P---  204 (242)
Q Consensus       158 l~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~---------~---~---  204 (242)
                      | +..+.       +...         ...+.|.++.|++...  ......|.+.|.--.+.+         .   |   
T Consensus       277 L-~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~  355 (395)
T PRK08114        277 L-AEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILANQPEEI  355 (395)
T ss_pred             H-HcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceeccCCchhh
Confidence            8 55442       1111         1124577889998642  134455655553211111         1   0   


Q ss_pred             ----------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 ----------ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 ----------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                ..++.+|++    ...|+.+.+++-|+++++.+
T Consensus       356 ~~~~~~~~~~~~~~liRlS----vGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        356 AAIRPAGEVDFTGTLIRLH----IGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             hccCChhHhcCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence                      123689999    34567788888888877653

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.36  E-value=1.3e-10  Score=99.82  Aligned_cols=218  Identities=12%  Similarity=0.088  Sum_probs=139.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh------CCEEEEeccccccCc---cCc-ccccccC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR---TGK-LLAIHYE   79 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~---~g~-~~~~~~~   79 (242)
                      |+++ +...+.++.+|++.-+++.+|.+-|    +++|+++|++|      |+++.+|.+|.|+..   .++ .+.+.  
T Consensus       175 d~~~L~~~i~~~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--  248 (431)
T TIGR01788       175 DPEQVVEAVDENTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--  248 (431)
T ss_pred             CHHHHHHHHhhCCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--
Confidence            4455 4444567889999999999998887    99999999999      999999999986311   111 11111  


Q ss_pred             CCCCCEEEee--ccccCCccchheeEeChh--hhhccCCC--CCC-----CCCCCCH--HHHHHHHHHHHHHHh---ccH
Q psy6548          80 DVRPDIVILG--KALSGGLYPISAVLADDE--VMGTLVPG--THG-----STYGGNP--LACKLAMTALDVILE---ENM  143 (242)
Q Consensus        80 ~~~~~~~~~s--K~~~~g~~~~g~~~~~~~--~~~~l~~~--~~~-----~~~~~~~--~~~~~a~a~l~~~~~---~~~  143 (242)
                      ....|.++++  |++.++ .++|+++..++  +...+...  ..+     .+...+.  ......+..++.+..   +++
T Consensus       249 ~~~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i  327 (431)
T TIGR01788       249 LPRVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKI  327 (431)
T ss_pred             CCCceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHH
Confidence            1245667755  987666 78898887643  22222110  111     1121121  122234444443333   345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCC---chhHHHHHHHHHHCCceec----cC---CCCEEEE
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKS---ILEVYDVCIKMKDAGLVTK----PI---SNNIIRL  212 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~----~~---~~~~lR~  212 (242)
                      .++..++.+++.+.| ++.+. +....+ ....++.|.+...   ..+..++.+.|.++|+.+.    |.   +..++|+
T Consensus       328 ~~~~~~la~~l~~~L-~~~~~-~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~  405 (431)
T TIGR01788       328 MQNSLDVARYLAEEI-AKLGP-FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRI  405 (431)
T ss_pred             HHHHHHHHHHHHHHH-HhCCC-EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEE
Confidence            677778888898988 66553 111111 2345666777641   1467789999999998752    21   3457999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         213 SPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.....+.+.++.+++.|++++..+
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       406 VVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHhh
Confidence            9777788999999999999988764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.35  E-value=2.5e-10  Score=97.25  Aligned_cols=199  Identities=16%  Similarity=0.160  Sum_probs=120.3

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEee----cccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILG----KALS   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~s----K~~~   93 (242)
                      +++++|++.+   .+|...+    +++|.++|++||+++|+|++|+ +|..   +.....+.  ..|+.++|    |.++
T Consensus       120 ~~t~~v~~~~---~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~  188 (380)
T TIGR03588       120 KLPKAIVPVD---FAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIIT  188 (380)
T ss_pred             CCceEEEEeC---CCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccc
Confidence            5788877533   3565443    8999999999999999999996 2211   11011233  34777755    8887


Q ss_pred             CCccchheeEe-ChhhhhccCCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          94 GGLYPISAVLA-DDEVMGTLVPGT-------------------------HGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        94 ~g~~~~g~~~~-~~~~~~~l~~~~-------------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                      .|  ..|+++. ++++.++++...                         .+..+..+.+..+.+++.|+.+  +.+.++.
T Consensus       189 ~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r  264 (380)
T TIGR03588       189 TA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKR  264 (380)
T ss_pred             cc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHH
Confidence            54  2444554 466665543210                         1112233445444444444433  4467778


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeE----eeeceeEEEEecC-CchhHHHHHHHHHHCCceeccC----C------------
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVV----RGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVTKPI----S------------  206 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~----~------------  206 (242)
                      +++.+++++.| +.++.......    ........+.+.. .+.+.+++.+.|.++||.++..    .            
T Consensus       265 ~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~  343 (380)
T TIGR03588       265 REIAARYDRLL-KDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDG  343 (380)
T ss_pred             HHHHHHHHHHh-cCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcC
Confidence            88888999999 66653111111    1111222333332 1146789999999999987521    0            


Q ss_pred             ---------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         207 ---------NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       207 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                               ...+++-++...|++|+++.++.|++++
T Consensus       344 ~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       344 DLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence                     1457887788889999999999998763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.35  E-value=3.1e-11  Score=103.51  Aligned_cols=214  Identities=14%  Similarity=0.140  Sum_probs=128.9

Q ss_pred             ccCCC-Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           6 PVKSK-QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         6 ~~~~~-d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      .++++ |++. +...+++|++|++|.+.|+++.++.    +++|+++|++||+++|+|+++.      .+...+......
T Consensus       130 ~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~GA  199 (432)
T PRK06702        130 FFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEHGA  199 (432)
T ss_pred             EECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhcCC
Confidence            44554 6677 6666778999999999999887765    9999999999999999999874      122333334566


Q ss_pred             CEEE--eeccccCCccchh-eeEeCh----------hhhh---------------------ccC-CCCCCCCCCCCHHHH
Q psy6548          84 DIVI--LGKALSGGLYPIS-AVLADD----------EVMG---------------------TLV-PGTHGSTYGGNPLAC  128 (242)
Q Consensus        84 ~~~~--~sK~~~~g~~~~g-~~~~~~----------~~~~---------------------~l~-~~~~~~~~~~~~~~~  128 (242)
                      |+++  ++|.++|....+| .++...          ++.+                     ... .....+....+++..
T Consensus       200 DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a  279 (432)
T PRK06702        200 NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNA  279 (432)
T ss_pred             CEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHH
Confidence            7777  7897773212222 222111          1110                     000 001122335667766


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe---------E-eeeceeEEEEecCCchhHHHH
Q psy6548         129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV---------V-RGKGLLNAIVLDKSILEVYDV  191 (242)
Q Consensus       129 ~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~  191 (242)
                      ..++..|+.+.  ...++.+++...+.+.| +..+.       +....         . .+.|.++.|++......+..|
T Consensus       280 ~l~~rgL~Tl~--lR~~r~~~Na~~la~~L-~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f  356 (432)
T PRK06702        280 YISNIGLETLH--LRMERHSENALAVAKWL-ADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEF  356 (432)
T ss_pred             HHHHhccCcHH--HHHHHHHHHHHHHHHHH-HhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHH
Confidence            66555555433  24566678888888999 65542       11110         0 245678889986432445566


Q ss_pred             HHHHHHCCcee----------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         192 CIKMKDAGLVT----------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       192 ~~~l~~~gi~~----------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+.|.--.+.+          .|.                 ..+.+|++    ...|+.+.+++-|+++++.
T Consensus       357 ~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS----vGlEd~eDLi~Dl~~Al~~  424 (432)
T PRK06702        357 IANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS----VGIEDVSDIIADLEAALVG  424 (432)
T ss_pred             HHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhc
Confidence            66664222111          111                 24689999    4556788888888888765

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.34  E-value=6e-11  Score=102.18  Aligned_cols=217  Identities=18%  Similarity=0.176  Sum_probs=125.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++-+|+++ +...+++|++|+++.+.|++|.+.+    +++|+++|++||+++|+|.++.    .+.. . ......
T Consensus       131 v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a----~~~~-~-~pl~~G  200 (433)
T PRK08134        131 TTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT----TPYL-L-RPFEHG  200 (433)
T ss_pred             EEEECCCCHHHHHHhcCCCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc----cccc-C-CchhcC
Confidence            33455567887 6666778999999999999997776    9999999999999999999984    1111 1 112345


Q ss_pred             CCEEEee--ccccC-CccchheeEe-Chhh-------hhccCCCC--------------------------CCCCCCCCH
Q psy6548          83 PDIVILG--KALSG-GLYPISAVLA-DDEV-------MGTLVPGT--------------------------HGSTYGGNP  125 (242)
Q Consensus        83 ~~~~~~s--K~~~~-g~~~~g~~~~-~~~~-------~~~l~~~~--------------------------~~~~~~~~~  125 (242)
                      .|++++|  |.++| | -.+|.++. ....       ...+.+..                          .......++
T Consensus       201 aD~vv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~  279 (433)
T PRK08134        201 ADLVYHSATKFLGGHG-TAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSP  279 (433)
T ss_pred             CCEEEeccccccCCCC-CceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCH
Confidence            6887754  98884 2 22343332 1110       00111000                          000112233


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe---------E-eeeceeEEEEecCCchhH
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV---------V-RGKGLLNAIVLDKSILEV  188 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~  188 (242)
                      ..+...+..++.+  +...++..+++..+.+.| +..+.       .....         . .+.|.++.|++..+...+
T Consensus       280 ~~A~l~~~gL~tl--~~R~~~~~~nA~~la~~L-~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~  356 (433)
T PRK08134        280 MNAWQLLQGIETL--PLRMERHVANTRKVVAFL-ASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAG  356 (433)
T ss_pred             HHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHH
Confidence            3333333333322  234566777888888888 55442       11111         1 345788899986532445


Q ss_pred             HHHHHHHHHCCcee----------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         189 YDVCIKMKDAGLVT----------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       189 ~~~~~~l~~~gi~~----------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ..|.+.|.--.+..          .|.                 ..+.||++    ...|+.+.+++.|+++++.+.
T Consensus       357 ~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRls----vGlE~~~dli~dl~~Al~~~~  429 (433)
T PRK08134        357 RKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLS----IGLEDADDLIDDLKRALKAAE  429 (433)
T ss_pred             HHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence            66766664222111          111                 24689999    445677778888888777643

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.33  E-value=2.5e-10  Score=104.46  Aligned_cols=207  Identities=12%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--cccc---
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALS---   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~---   93 (242)
                      +++++|.+..+++.++ +.   +.+++|+++|+++|+++++|.++. +....    . .--.+..|+++++  |+|+   
T Consensus       640 ~~laaVmiT~Pnt~Gv-~e---~~V~eI~~iah~~Galv~vDgA~~~a~~~l----~-~Pg~~GADi~~~s~HKtf~~P~  710 (954)
T PRK12566        640 DRLSCLMITYPSTHGV-YE---EGIREICEVVHQHGGQVYMDGANLNAQVGL----A-RPADIGADVSHMNLHKTFCIPH  710 (954)
T ss_pred             CCEEEEEEEecCcCce-ec---chHHHHHHHHHHcCCEEEEEeeChhhccCC----C-ChhhcCCCEEEecCCcccCcCc
Confidence            6788777777666553 22   339999999999999999999984 22111    1 0113467998865  9887   


Q ss_pred             --CCccchheeEeChhhhhccCCCC----------CCCC---CCCCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHH
Q psy6548          94 --GGLYPISAVLADDEVMGTLVPGT----------HGST---YGGNPLACKLAMTALDVILEENMI---ENAYKMGEIFR  155 (242)
Q Consensus        94 --~g~~~~g~~~~~~~~~~~l~~~~----------~~~~---~~~~~~~~~~a~a~l~~~~~~~~~---~~~~~~~~~l~  155 (242)
                        || ..+|.+...+++...+....          .+.+   .+.+...+..++.-++.+-.+ +.   .....++++++
T Consensus       711 G~GG-P~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla  788 (954)
T PRK12566        711 GGGG-PGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLA  788 (954)
T ss_pred             cCCC-CccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHH
Confidence              33 45666666665555544311          1111   111212222233333333223 22   22245888899


Q ss_pred             HHHHhhcCCCCCCeEe--eeceeEEEEec---C-CchhHHHHHHHHHHCCceecc---CCCCEEEEeccCcCCHHHHHHH
Q psy6548         156 SELRSRLSPDIVPVVR--GKGLLNAIVLD---K-SILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~--~~~~~~~~~~~---~-~~~~~~~~~~~l~~~gi~~~~---~~~~~lR~~~~~~~t~e~i~~~  226 (242)
                      ++| +.... ......  ....-..+.+.   . .+.+..++.++|.+.|+....   ...+.+|++|+...+++|+|++
T Consensus       789 ~rL-~~~~~-v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf  866 (954)
T PRK12566        789 NQL-GGAFP-VLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRF  866 (954)
T ss_pred             HHh-HhhCC-CCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHH
Confidence            989 44221 111111  11122223332   1 114568899999998887642   2377899999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy6548         227 LDIIINTINTMAA  239 (242)
Q Consensus       227 ~~~l~~~l~~~~~  239 (242)
                      ++.|..+.+++.+
T Consensus       867 ~eAL~~I~~e~~~  879 (954)
T PRK12566        867 VEAMLSIRAEIGK  879 (954)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887543

>PRK02769 histidine decarboxylase; Provisional

Probab=99.33  E-value=2.5e-10  Score=96.70  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=131.8

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC---CEEEEeccccccCc-cCcc-cccccCCCCCCEEEee--cccc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN---VLFIADEVQTGLGR-TGKL-LAIHYEDVRPDIVILG--KALS   93 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~---~~li~De~~~~~~~-~g~~-~~~~~~~~~~~~~~~s--K~~~   93 (242)
                      ++.+|++....+++|.+-|    +++|+++|++||   +++++|.+|.++.- .-.. ..++... ..|.+++|  |.++
T Consensus       160 ~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~  234 (380)
T PRK02769        160 QPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIG  234 (380)
T ss_pred             CcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCC
Confidence            5889999999999998877    999999999998   69999999976311 0000 0111111 46877755  9888


Q ss_pred             CCccchheeEeChhhhhccCCCC-----CCCCC--CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcC
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGT-----HGSTY--GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~-----~~~~~--~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      ++ .++|.++.+++..+.+.+..     ...++  +.+....++.+++++.+..+   +..++..++++++.++| +..+
T Consensus       235 ~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L-~~~g  312 (380)
T PRK02769        235 SP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRL-QANG  312 (380)
T ss_pred             CC-CCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence            77 88999988877766553311     11122  23345666777888877553   45677778888888888 5543


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                        +.....+....+.|..+.+     .+     .+|..+.+. ++.+|++....++.|.++.+++.|.+....
T Consensus       313 --~~~~~~p~~~~v~f~~~~~-----~~-----~~~w~l~~~-~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        313 --IPAWRNPNSITVVFPCPSE-----RI-----WKKWHLATS-GNQAHIITMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             --CEEEcCCCceEEEEcCCCH-----HH-----HhCeeEccc-CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence              2222233444555543331     22     267777766 458999988888999999999999887653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.32  E-value=2.2e-10  Score=97.48  Aligned_cols=208  Identities=20%  Similarity=0.244  Sum_probs=121.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...++++++|+  +++ ++|...+    +++|.++|++||+++|+|++|+ |....|..  ...++  .++.+|
T Consensus       110 d~~~l~~~i~~~tkav~--~~~-~~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf  178 (379)
T PRK11658        110 TPEAIEAAITPRTKAII--PVH-YAGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSF  178 (379)
T ss_pred             CHHHHHHhcccCCeEEE--EeC-CCCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCee--cCCCC--CEEEeC
Confidence            4555 444456788877  333 3565443    8999999999999999999996 32222211  12223  255565


Q ss_pred             e--ccccCCccchheeEeC-hhhhhccCCCC-C-----------------------CCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548          89 G--KALSGGLYPISAVLAD-DEVMGTLVPGT-H-----------------------GSTYGGNPLACKLAMTALDVILEE  141 (242)
Q Consensus        89 s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~-~-----------------------~~~~~~~~~~~~~a~a~l~~~~~~  141 (242)
                      +  |.+.+|  ..|+++.+ +++.+++++.. +                       ++++..+.+..+.++..++-  -+
T Consensus       179 ~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~--l~  254 (379)
T PRK11658        179 HAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK--LE  254 (379)
T ss_pred             CCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH--HH
Confidence            5  777654  46666654 67766554310 0                       11222233333333333332  24


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeE----eeeceeEEEEecCC--chhHHHHHHHHHHCCceecc----C------
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVV----RGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVTKP----I------  205 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~----~------  205 (242)
                      +..++.+++.+++++.| +.++......+    ........+.++..  +.+.+++.++|.++||.++.    .      
T Consensus       255 ~~~~~r~~~a~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~  333 (379)
T PRK11658        255 ALNARRREIAARYLQAL-ADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYY  333 (379)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhh
Confidence            46677788888888888 66542111111    11112333444321  13578999999999987652    1      


Q ss_pred             ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                     ....+.+-++...++|++++.++.|++++
T Consensus       334 ~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        334 RERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             hccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence                           11345555567789999999999998865

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.32  E-value=3.6e-10  Score=105.12  Aligned_cols=209  Identities=13%  Similarity=0.157  Sum_probs=125.7

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--cccc---
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALS---   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~---   93 (242)
                      .++++|++..+... |.+..+   +++|+++|+++|+++++|.++. ++.....+   .  ....|+++++  |+|+   
T Consensus       639 ~~la~V~it~pst~-G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p---g--~~GADi~~~s~HK~f~~P~  709 (954)
T PRK05367        639 DNLAAIMITYPSTH-GVFEET---IREICEIVHEHGGQVYLDGANMNAQVGLARP---G--DIGADVSHLNLHKTFCIPH  709 (954)
T ss_pred             CCeEEEEEEcCCCC-eeecCC---HHHHHHHHHHcCCEEEEECcChhhccCCCCh---h--hcCCCEEEecCcccCCCCc
Confidence            36777777665544 433332   9999999999999999999995 22111111   1  2356888866  9987   


Q ss_pred             --CCccchheeEeChhhhhccCCCCCC--------CCCCCCHH----HHHHHHHHHHHHHhccHHHHHH---HHHHHHHH
Q psy6548          94 --GGLYPISAVLADDEVMGTLVPGTHG--------STYGGNPL----ACKLAMTALDVILEENMIENAY---KMGEIFRS  156 (242)
Q Consensus        94 --~g~~~~g~~~~~~~~~~~l~~~~~~--------~~~~~~~~----~~~~a~a~l~~~~~~~~~~~~~---~~~~~l~~  156 (242)
                        || -.+|.+...+++...+.....+        ++....+.    .+..++..+..+-.+++.+..+   .+++++.+
T Consensus       710 G~GG-Pg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~  788 (954)
T PRK05367        710 GGGG-PGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAK  788 (954)
T ss_pred             CCCC-CceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence              34 4466777776555444322110        11111122    1122333334333455555555   78999999


Q ss_pred             HHHhhcCCCCCCe---EeeeceeEEE-EecCC-chhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         157 ELRSRLSPDIVPV---VRGKGLLNAI-VLDKS-ILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       157 ~l~~~l~~~~~~~---~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +| +..-......   .....+++.+ .++.. +....++.++|.+.|+.....   ..+.+|++|+...+++|+|++++
T Consensus       789 ~L-~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~  867 (954)
T PRK05367        789 RL-KDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCD  867 (954)
T ss_pred             HH-HhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHH
Confidence            99 4432111111   0011122222 12211 145788999999999987532   37789999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy6548         229 IIINTINTMAA  239 (242)
Q Consensus       229 ~l~~~l~~~~~  239 (242)
                      .+..+..++.+
T Consensus       868 al~~i~~e~~~  878 (954)
T PRK05367        868 AMIAIRAEIDE  878 (954)
T ss_pred             HHHHHHHHHHH
Confidence            99988887654

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.31  E-value=2.4e-10  Score=93.12  Aligned_cols=217  Identities=17%  Similarity=0.196  Sum_probs=132.5

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++-+|++. +...+.+|++|++|..-||.++++.    ++.++++|++||+++|+|....      .++.++-....
T Consensus       129 v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~a------tpyl~rP~~hG  198 (426)
T COG2873         129 VRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFA------TPYLCRPIEHG  198 (426)
T ss_pred             EEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCC------cceecchhhcC
Confidence            45566777787 8888999999999999999997765    9999999999999999998764      12344444567


Q ss_pred             CCEEE--eeccccC-CccchheeEeCh---hhhh--cc------CCCCCCCCC----CCCHHHHHHHHHHHHHH------
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLADD---EVMG--TL------VPGTHGSTY----GGNPLACKLAMTALDVI------  138 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~~~---~~~~--~l------~~~~~~~~~----~~~~~~~~~a~a~l~~~------  138 (242)
                      .|+++  .+|.++| | -.+|.++...   ++..  ++      .+.+++..+    ....+...+-...++.+      
T Consensus       199 ADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsP  277 (426)
T COG2873         199 ADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSP  277 (426)
T ss_pred             CCEEEEeecccccCCc-cccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCc
Confidence            88888  7799994 4 5566554322   2220  11      111233222    11111111111112221      


Q ss_pred             ----------Hh-ccHHHHHHHHHHHHHHHHHhhcCCC-------C----------CCeEeeeceeEEEEecCCchhHHH
Q psy6548         139 ----------LE-ENMIENAYKMGEIFRSELRSRLSPD-------I----------VPVVRGKGLLNAIVLDKSILEVYD  190 (242)
Q Consensus       139 ----------~~-~~~~~~~~~~~~~l~~~l~~~l~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~  190 (242)
                                ++ .=..++-.+++..+.+.| +..+..       .          ...+.+.|.++.|.+....+..+.
T Consensus       278 fnAfl~lqGlETL~LRmerH~~NA~~vA~~L-~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~  356 (426)
T COG2873         278 FNAFLLLQGLETLSLRMERHCENALKVAEFL-ENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKK  356 (426)
T ss_pred             HHHHHHHhchhhhHHHHHHHHHhHHHHHHHH-hcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHH
Confidence                      11 112355556778888888 554431       0          012345577888888887444455


Q ss_pred             HHHHHHH----------CCceeccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         191 VCIKMKD----------AGLVTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       191 ~~~~l~~----------~gi~~~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      |.+.|.-          +-+++.|.                 .++.||+|    ..-|+++.++.-|++++++
T Consensus       357 fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlS----VGIEd~~DiiaDl~qAl~~  425 (426)
T COG2873         357 FIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLS----VGIEDIDDIIADLEQALEA  425 (426)
T ss_pred             HHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEE----eccCCHHHHHHHHHHHHhc
Confidence            5555531          24444442                 46789999    4457888888888887754

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.30  E-value=1.3e-11  Score=104.32  Aligned_cols=215  Identities=18%  Similarity=0.138  Sum_probs=123.5

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC-CEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~-~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..++-+|+++ +...++++++|++|++.|+...++.    +++++++|+++| +++++|.+...      +..+..+..
T Consensus       122 v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at------p~~~~pL~~  191 (386)
T PF01053_consen  122 VTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT------PYNQNPLEL  191 (386)
T ss_dssp             EEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH------TTTC-GGGG
T ss_pred             EEEeCchhHHHHHhhccccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc------eeeeccCcC
Confidence            34566677888 6555669999999999999876664    999999999998 99999998742      112222233


Q ss_pred             CCCEEE--eeccccCCc-cchheeEeC--hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSGGL-YPISAVLAD--DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~--~sK~~~~g~-~~~g~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|+++  .+|.++|.- .=.|.++.+  +++.+.++..........+|..+......++.+  +-..++..+++..+.+
T Consensus       192 GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~  269 (386)
T PF01053_consen  192 GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQNENAEALAE  269 (386)
T ss_dssp             T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred             CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHH
Confidence            468777  669988420 225566654  466665543211111122333333323333322  2245667778888888


Q ss_pred             HHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHC--Ccee--------ccC-----
Q psy6548         157 ELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDA--GLVT--------KPI-----  205 (242)
Q Consensus       157 ~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gi~~--------~~~-----  205 (242)
                      .| +..+..       ...         ...+.|.++.|++......+..|.+.|.--  |.-+        .|.     
T Consensus       270 ~L-~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~  348 (386)
T PF01053_consen  270 FL-EEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPASTSHR  348 (386)
T ss_dssp             HH-HTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTT
T ss_pred             HH-HhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccchhhc
Confidence            88 555421       110         112445699999988722566777777421  1111        111     


Q ss_pred             ------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 ------------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 ------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                  .++.+|++    ...|+.+.+++.|+++++
T Consensus       349 ~~~~e~~~~~Gi~~~liRlS----vGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  349 SLSPEERAEAGISDGLIRLS----VGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             TSCHHHHHHTTS-TTEEEEE------SS-HHHHHHHHHHHHH
T ss_pred             cCChhhhhccCCCCCeeEEE----eccCCHHHHHHHHHHhcC
Confidence                        24789999    345678888888887764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK04311 selenocysteine synthase; Provisional

Probab=99.28  E-value=9.1e-10  Score=95.33  Aligned_cols=218  Identities=14%  Similarity=0.121  Sum_probs=128.0

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccC--CC--cccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc------Cccccccc
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT------GKLLAIHY   78 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~--~G--~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~------g~~~~~~~   78 (242)
                      .++++ +...+++|++++++...|+  .|  ..++    +++|+++|++||+++|+|....-++..      +.+...+.
T Consensus       204 t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~  279 (464)
T PRK04311        204 THLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQEL  279 (464)
T ss_pred             CCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhH
Confidence            34555 5555678999999887664  34  2333    999999999999999999853212111      11111111


Q ss_pred             CCCCCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccH-----------
Q psy6548          79 EDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM-----------  143 (242)
Q Consensus        79 ~~~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~-----------  143 (242)
                      .....|++++|  |+++|+  ..|++++++++++++++....-.+...-..+++..+++....+  +.+           
T Consensus       280 l~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~  357 (464)
T PRK04311        280 LAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTR  357 (464)
T ss_pred             HhcCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcC
Confidence            22467999987  999876  3788999999988877422222222222333333444442211  111           


Q ss_pred             -HHHHHHHHHHHHHHHHhhcCCCCCCeEe------ee-------ceeEEEEecCCchhHHHHHHHHHHC--CceeccCCC
Q psy6548         144 -IENAYKMGEIFRSELRSRLSPDIVPVVR------GK-------GLLNAIVLDKSILEVYDVCIKMKDA--GLVTKPISN  207 (242)
Q Consensus       144 -~~~~~~~~~~l~~~l~~~l~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~l~~~--gi~~~~~~~  207 (242)
                       .+..++++..+.+.|+...+........      +.       -+-+.+.+......+.++.++|++-  .|+.+. ..
T Consensus       358 ~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~-~~  436 (464)
T PRK04311        358 SPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRI-ED  436 (464)
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE-EC
Confidence             2566667888888883322111100000      00       1233344443224678899999874  566653 46


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +.+.+-+... .++|++.++++|.+++.
T Consensus       437 ~~~~ld~r~~-~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        437 GRLLLDLRTL-EEEDEERLAAALLEALN  463 (464)
T ss_pred             CEEEEEeCcC-CHHHHHHHHHHHHHHhh
Confidence            7777765544 77899999999988754

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.26  E-value=2.1e-10  Score=96.36  Aligned_cols=211  Identities=17%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             cCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           7 VKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         7 ~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      ++-.+.+.  +++.++++++|++|++-|++-.+..    +++++++|+++|+++|+|.+.+.      +..++-+....|
T Consensus       133 ~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat------P~~q~PL~~GaD  202 (396)
T COG0626         133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT------PVLQRPLELGAD  202 (396)
T ss_pred             ECCCChHHHHHHhcccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc------ccccChhhcCCC
Confidence            34334433  5555579999999999999875554    99999999999999999998752      223334455678


Q ss_pred             EEE--eeccccCCc-cchheeEeC-hhhhhccCC--C-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          85 IVI--LGKALSGGL-YPISAVLAD-DEVMGTLVP--G-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        85 ~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~--~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      +++  .+|-++|.. .=.|.++++ +++.+.+..  . ..+.  ..+|..+...+..++.+.-  ..++..+++..+.+.
T Consensus       203 IVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~--~l~p~dA~l~lRGlkTL~~--Rm~~~~~nA~~IA~~  278 (396)
T COG0626         203 IVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA--VLSPFDAWLLLRGLRTLAL--RMERHNENALKIAEF  278 (396)
T ss_pred             EEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC--CCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHH
Confidence            888  669999641 114445544 455555421  1 1222  2344444333444443322  245566678888888


Q ss_pred             HHhhcCCC---CCC-------------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------------
Q psy6548         158 LRSRLSPD---IVP-------------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------------  205 (242)
Q Consensus       158 l~~~l~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------------  205 (242)
                      | +..+..   ...             ...+.|.++.|++..+ ..+..|.+.|.--.+..+.+                
T Consensus       279 L-~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~-~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~  356 (396)
T COG0626         279 L-ADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHAS  356 (396)
T ss_pred             H-hcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh-HHHHHHHHhCCccEEeccCCCcccccccccccCccc
Confidence            8 554321   000             1114788999999885 46777777765333222211                


Q ss_pred             -----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 -----------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 -----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                 .++.+|++    ...|+++.+++-|+++++.+
T Consensus       357 ~~~~~r~~~Gi~~~LvRlS----VGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         357 IPLEERAKAGITDGLVRLS----VGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             CCHhHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHHhh
Confidence                       35789999    45567778888888777653

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.26  E-value=2.2e-10  Score=98.30  Aligned_cols=187  Identities=11%  Similarity=0.121  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccchheeEe-ChhhhhccCCCCCC
Q psy6548          43 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGTHG  118 (242)
Q Consensus        43 ~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~~g~~~~-~~~~~~~l~~~~~~  118 (242)
                      .+++|+++|++||+++|+|++|......-.......... ..|+++  ++|.+..+ ...|.++. ++++++.+.....+
T Consensus       223 dL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~y~g  301 (444)
T TIGR03531       223 DIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKSYPG  301 (444)
T ss_pred             CHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHhccC
Confidence            499999999999999999999963111100000011112 246666  56998842 12444545 57777777653222


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeeceeEEEEecCC-chhHHHHH
Q psy6548         119 STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKGLLNAIVLDKS-ILEVYDVC  192 (242)
Q Consensus       119 ~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~  192 (242)
                      ..  .+..++.+...++....+  +++.++..++++++.+.| +.+..  + .....+....-..+.+..- +.+..++.
T Consensus       302 ~~--~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L-~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g  378 (444)
T TIGR03531       302 RA--SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELL-QKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLG  378 (444)
T ss_pred             CC--CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcEeecCCCCceeEEEecccccccCHHHHH
Confidence            11  223444444444433322  456777778888888888 66531  1 1112222222223333311 14688899


Q ss_pred             HHHHHCCce----eccCC--------------------CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         193 IKMKDAGLV----TKPIS--------------------NNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       193 ~~l~~~gi~----~~~~~--------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ..|+.++|-    +.++.                    ..++-++.....+.+|++.++++|+++
T Consensus       379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            999998762    22221                    125556666788999999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>KOG1549|consensus

Probab=99.24  E-value=5.7e-10  Score=93.16  Aligned_cols=210  Identities=14%  Similarity=0.147  Sum_probs=121.9

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      +...+.+|+++.++.++|+.|...|    ++||.++|+++|+.+++|.+|.    .|. ...+.-.+.+|+.+++  |++
T Consensus       175 ~~~i~~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa----vG~-i~vDV~eln~D~~s~s~HK~y  245 (428)
T KOG1549|consen  175 REAIRSKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA----VGK-IPVDVQELNADFLSISAHKIY  245 (428)
T ss_pred             HHhcCCCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh----cCC-ccccHHHcCchheeeeccccc
Confidence            5566889999999999999998888    9999999999999999999996    333 2334445677888755  999


Q ss_pred             cCCccchheeEeChhhhhccC--CCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          93 SGGLYPISAVLADDEVMGTLV--PGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~--~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      |+.  ++|++++.+ ...++.  +...++       ..+.+.+.+.+.-++.++...  ......++++-..+...+-..
T Consensus       246 gp~--~iGaLYvr~-~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~  322 (428)
T KOG1549|consen  246 GPP--GIGALYVRR-KRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQS  322 (428)
T ss_pred             CCC--cceEEEEcc-CCCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh
Confidence            943  288888775 111222  211111       011223333344455565544  233455555555565555222


Q ss_pred             cCCCCCCe--EeeeceeEEEEec--CCchhHHHHHH------------------HHHHCCceeccCCCCEEEEeccCcCC
Q psy6548         162 LSPDIVPV--VRGKGLLNAIVLD--KSILEVYDVCI------------------KMKDAGLVTKPISNNIIRLSPALNIT  219 (242)
Q Consensus       162 l~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~------------------~l~~~gi~~~~~~~~~lR~~~~~~~t  219 (242)
                      +.......  .........+.++  .......+...                  .|+..|+-... ...++||+...+++
T Consensus       323 ~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~-~~~~iRis~G~y~t  401 (428)
T KOG1549|consen  323 LPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDL-AHSSIRISIGRYTT  401 (428)
T ss_pred             CchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhh-hcceeEEeeeeeCc
Confidence            33211111  1111122222222  21111111111                  12222221111 25789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTINTM  237 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~  237 (242)
                      ++|++++++.+.+..+.+
T Consensus       402 ~~di~~~~~~i~~~v~~~  419 (428)
T KOG1549|consen  402 EEDIDYLVDAIKKLVSLL  419 (428)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999998877654

>PLN02271 serine hydroxymethyltransferase

Probab=99.24  E-value=1.4e-09  Score=94.41  Aligned_cols=212  Identities=13%  Similarity=0.056  Sum_probs=132.8

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |.+.  +.+...++++|++.....+  ...+    +++++++|+++|+++++|-+| .|+...+.. ..+.  ...|+++
T Consensus       286 Dyd~lek~a~~~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~sP~--~~aDvvt  356 (586)
T PLN02271        286 DYDKLEEKALDFRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAKEC-VNPF--DYCDIVT  356 (586)
T ss_pred             CHHHHHHHhhhcCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccCcC-CCCC--cCCcEEE
Confidence            5555  4466889999999775443  1233    899999999999999999999 554333211 1011  1368887


Q ss_pred             e--eccccCCccchheeEeChh--------------------hhhccCCCCCCCCCCCCH-HHHHHHHHHHHHHHh---c
Q psy6548          88 L--GKALSGGLYPISAVLADDE--------------------VMGTLVPGTHGSTYGGNP-LACKLAMTALDVILE---E  141 (242)
Q Consensus        88 ~--sK~~~~g~~~~g~~~~~~~--------------------~~~~l~~~~~~~~~~~~~-~~~~~a~a~l~~~~~---~  141 (242)
                      +  .|+|.|+ .+ |.++.+++                    +.+.+....+....+++. -.+++...+++....   .
T Consensus       357 ~TTHKtLrGP-rG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk  434 (586)
T PLN02271        357 STTHKSLRGP-RG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYK  434 (586)
T ss_pred             eCCcccCCCC-Cc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHH
Confidence            4  4999876 44 77766643                    223333221221112221 123332334565544   3


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------CCCEEEE
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------SNNIIRL  212 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------~~~~lR~  212 (242)
                      ++.+++.++.+.|.+.| .+.+..+.... ...+++++++...+.+.....+.|.+.||.+...         .++.||+
T Consensus       435 ~Ya~QVv~NAkaLA~~L-~~~G~~vv~gg-TdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRi  512 (586)
T PLN02271        435 AYMQQVKKNAQALASAL-LRRKCRLVTGG-TDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRI  512 (586)
T ss_pred             HHHHHHHHHHHHHHHHH-HHCCCeEeeCC-CCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccc
Confidence            46777888999999999 66553333222 2347888888664345677778888889998532         3567999


Q ss_pred             ecc----CcCCHHHHHHHHHHHHHHHH
Q psy6548         213 SPA----LNITEQELREGLDIIINTIN  235 (242)
Q Consensus       213 ~~~----~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ..+    ..+.++|+++..+.|.++++
T Consensus       513 GT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        513 GTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             cCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            643    45677899998888888876

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.21  E-value=3.2e-09  Score=91.72  Aligned_cols=213  Identities=14%  Similarity=0.127  Sum_probs=120.5

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccC--CCc--ccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC------ccccccc
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGE--AGA--VVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG------KLLAIHY   78 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~--~G~--~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g------~~~~~~~   78 (242)
                      +|+++ +...+++|++++++...|.  .|.  .++    +++|+++|++||+++++|....-++..+      .+...+.
T Consensus       199 ~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~  274 (454)
T TIGR00474       199 THLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV  274 (454)
T ss_pred             CCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH
Confidence            45666 5555678999888887665  353  444    9999999999999999996421121111      1111122


Q ss_pred             CCCCCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--cH-----------
Q psy6548          79 EDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE--NM-----------  143 (242)
Q Consensus        79 ~~~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~--~~-----------  143 (242)
                      .....|++++|  |+++|+ . .|++++++++++.+++....-.+...-..+++..+++....++  .+           
T Consensus       275 ~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~  352 (454)
T TIGR00474       275 IAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQ  352 (454)
T ss_pred             hHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhcc
Confidence            23457899988  999876 3 7889999988887664211111111222233333334332111  01           


Q ss_pred             -HHHHHHHHHHHHHHHHhhcCCCCCCeE------------eee-ceeEEEEecCCchhHHHHHHHHHHCC--ceeccCCC
Q psy6548         144 -IENAYKMGEIFRSELRSRLSPDIVPVV------------RGK-GLLNAIVLDKSILEVYDVCIKMKDAG--LVTKPISN  207 (242)
Q Consensus       144 -~~~~~~~~~~l~~~l~~~l~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~~~~  207 (242)
                       .+..++++..+.+.|++.++..+....            +.. -+-+.+.+......+.++.++|++..  |+.+ ...
T Consensus       353 ~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r-~~~  431 (454)
T TIGR00474       353 SPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGR-IED  431 (454)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEE-EEC
Confidence             235666777777888332221110000            000 12233444332246788999998765  5554 346


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      +.+.+-+... .++|++.++++|
T Consensus       432 ~~~~ld~r~~-~~~~~~~~~~~~  453 (454)
T TIGR00474       432 DRFLLDLRTL-LEDEEELLIEAL  453 (454)
T ss_pred             CEEEEEeCcC-CHHHHHHHHHHh
Confidence            7677765443 667888887765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02880 tyrosine decarboxylase

Probab=99.20  E-value=5e-10  Score=97.94  Aligned_cols=212  Identities=14%  Similarity=0.113  Sum_probs=126.4

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~   98 (242)
                      +.+|+..-.-.++|.+-|    +++|+++|++||+++.+|.+|.|+......+.....++ ..|.++  +.|++..+ ++
T Consensus       240 p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P-~~  314 (490)
T PLN02880        240 PFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN-FD  314 (490)
T ss_pred             cEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC-cc
Confidence            455555555566676666    99999999999999999999976421111111112243 467666  66999988 88


Q ss_pred             hheeEeChh--hhhccCCC-------CC--CCC-----CC---CCHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHH
Q psy6548          99 ISAVLADDE--VMGTLVPG-------TH--GST-----YG---GNPLACKLAMTALDVILEENMIENAY---KMGEIFRS  156 (242)
Q Consensus        99 ~g~~~~~~~--~~~~l~~~-------~~--~~~-----~~---~~~~~~~~a~a~l~~~~~~~~~~~~~---~~~~~l~~  156 (242)
                      +|.++..+.  +.+.+...       ..  ..+     ++   +..+.....+.+++.+-.+++.+.++   ++++++.+
T Consensus       315 ~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~  394 (490)
T PLN02880        315 CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQ  394 (490)
T ss_pred             EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            998887632  21211110       00  000     00   01111223444566554556666666   88888888


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceecc----CCCCEEEEeccCcCC-HHHHH
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKP----ISNNIIRLSPALNIT-EQELR  224 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~----~~~~~lR~~~~~~~t-~e~i~  224 (242)
                      .| ++.+. +....+....++.|.++...       ....++.++|.+.|-+...    .+..++|++++...| +++++
T Consensus       395 ~l-~~~~~-~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~  472 (490)
T PLN02880        395 LV-AQDSR-FEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVT  472 (490)
T ss_pred             HH-hcCCC-EEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHH
Confidence            88 54432 11111223446666665421       1224567777766655532    367799999866665 59999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy6548         225 EGLDIIINTINTMAAK  240 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~~  240 (242)
                      .+++.|.+...++..+
T Consensus       473 ~~~~~i~~~~~~~~~~  488 (490)
T PLN02880        473 AAWKVLQDEASKLLGK  488 (490)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988887554

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.17  E-value=7.4e-10  Score=95.46  Aligned_cols=209  Identities=13%  Similarity=0.172  Sum_probs=119.3

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      +|++. +...++++++|++|.+.|+.|.+.+    +++|+++|+++|+++|+|.+++.    +...  .......|++++
T Consensus       143 ~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~----g~~~--~p~~~GaDivv~  212 (437)
T PRK05613        143 DDPESWQAAVQPNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT----AALV--RPLELGADVVVA  212 (437)
T ss_pred             CCHHHHHHhCCccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc----cccc--ChHHhCCCEEEe
Confidence            46676 5555667999999998888886665    99999999999999999999852    1111  111234588875


Q ss_pred             e--ccccC-Cccchhe-eEeChhhh-hc------c-----C------------------------CCCCCCCCCCCHHHH
Q psy6548          89 G--KALSG-GLYPISA-VLADDEVM-GT------L-----V------------------------PGTHGSTYGGNPLAC  128 (242)
Q Consensus        89 s--K~~~~-g~~~~g~-~~~~~~~~-~~------l-----~------------------------~~~~~~~~~~~~~~~  128 (242)
                      |  |.++| | -.+|. ++.+.+.. ..      +     .                        ..........+|..+
T Consensus       213 S~~K~l~G~g-d~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a  291 (437)
T PRK05613        213 SLTKFYTGNG-SGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNA  291 (437)
T ss_pred             eccceecCCC-cceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            4  98885 3 33344 43332210 00      0     0                        000011112344443


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe----------EeeeceeEEEEecCCchhHHHH
Q psy6548         129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV----------VRGKGLLNAIVLDKSILEVYDV  191 (242)
Q Consensus       129 ~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  191 (242)
                      ......++.+.  -..++..+++..+.+.| +..+.       +....          ..+.|.++.|++......+..|
T Consensus       292 ~l~~rgl~TL~--lR~~~~~~nA~~lA~~L-~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f  368 (437)
T PRK05613        292 WVTAQGLDTLS--LRLERHNENAIKVAEFL-NNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAF  368 (437)
T ss_pred             HHHHcccCcHH--HHHHHHHHHHHHHHHHH-HcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHH
Confidence            33333333332  23466677888888888 65543       11111          1234678889986432445666


Q ss_pred             HHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         192 CIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       192 ~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+.|.--.+..+          |.                 .++.+|++    ...|+.+.+++.|+++++.
T Consensus       369 ~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRls----vGlE~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        369 IDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLS----VGIEDIDDIIADLEGGFAA  436 (437)
T ss_pred             HHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence            666642222111          10                 24689999    4556777788888777764

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.17  E-value=5.7e-09  Score=83.77  Aligned_cols=211  Identities=15%  Similarity=0.220  Sum_probs=143.0

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      ....+++++.+++.+|+--+|+...    +.+|-.++++||++++.|=+|+    .|. ...+...-..|+.+  .-|-+
T Consensus       160 ~~~~~dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs----aGa-vp~~Lh~~gaDfaigcsyKYL  230 (407)
T COG3844         160 EEAITDDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS----AGA-VPVDLHAAGADFAIGCSYKYL  230 (407)
T ss_pred             HHhhccceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc----cCC-cceeecccCCCeeeeeeceec
Confidence            3445789999999999999998775    9999999999999999999996    111 12233333456555  44888


Q ss_pred             cCCccc-hheeEeChhhhhccCCCCCC--------------------CCC---CCCHHHHHHHHHHHHHHHhc---cHHH
Q psy6548          93 SGGLYP-ISAVLADDEVMGTLVPGTHG--------------------STY---GGNPLACKLAMTALDVILEE---NMIE  145 (242)
Q Consensus        93 ~~g~~~-~g~~~~~~~~~~~l~~~~~~--------------------~~~---~~~~~~~~~a~a~l~~~~~~---~~~~  145 (242)
                      .|| .+ .+++...++..+...+...+                    .-|   +.+.+++++...+|++..+-   ++++
T Consensus       231 NgG-PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~  309 (407)
T COG3844         231 NGG-PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRK  309 (407)
T ss_pred             cCC-CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHH
Confidence            743 21 33444444443333221000                    001   22345666666678877552   3555


Q ss_pred             HHHHHHHHHHHHHHhhcCC-----CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec-cCcCC
Q psy6548         146 NAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP-ALNIT  219 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~-~~~~t  219 (242)
                      +.-.+.+++.+.++...+.     ..++.....|..+.+..+.    ..++.++|.++||+.--..++.+||.+ +++.+
T Consensus       310 kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~----~~~V~qaLi~rGVigD~R~P~vlRfgftPlY~~  385 (407)
T COG3844         310 KSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH----GYQVMQALIDRGVIGDFREPDVLRFGFTPLYVS  385 (407)
T ss_pred             hhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc----HHHHHHHHHHcCccccccCCCeeeecCccceec
Confidence            5566777887777444442     1223334557777777665    588999999999999877799999987 78899


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy6548         220 EQELREGLDIIINTINTMAA  239 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .+|+-.+++.|++++....-
T Consensus       386 ~~DVw~AV~~L~evL~t~a~  405 (407)
T COG3844         386 FVDVWDAVDALEEVLDTLAW  405 (407)
T ss_pred             hhHHHHHHHHHHHHHHhhcc
Confidence            99999999999999987653

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.17  E-value=6.6e-09  Score=89.86  Aligned_cols=209  Identities=16%  Similarity=0.172  Sum_probs=125.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++|+++++.+   ...    .+++|.++|++||+++|+|++|+ +|..-.+.   ..|-..|+.+||
T Consensus       148 d~~~le~~i~~~tkaVi~~~~~G---~p~----dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g~---~~G~~gd~~~fS  216 (438)
T PRK15407        148 DASLLEAAVSPKTKAIMIAHTLG---NPF----DLAAVKAFCDKHNLWLIEDNCDA-LGSTYDGR---MTGTFGDIATLS  216 (438)
T ss_pred             CHHHHHHHcCcCCeEEEEeCCCC---Chh----hHHHHHHHHHHCCCEEEEECccc-hhhhcCCe---eeeccCceEEEe
Confidence            4555 444566899999988543   222    38999999999999999999996 22211111   123334777765


Q ss_pred             ----ccccCCccchheeEeC-hhhhhccCCC---------------------------------------CCCCCCCCCH
Q psy6548          90 ----KALSGGLYPISAVLAD-DEVMGTLVPG---------------------------------------THGSTYGGNP  125 (242)
Q Consensus        90 ----K~~~~g~~~~g~~~~~-~~~~~~l~~~---------------------------------------~~~~~~~~~~  125 (242)
                          |.+.+| - .|+++.+ +++.+.++..                                       ..++++..+.
T Consensus       217 f~~~k~~~~g-e-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmse  294 (438)
T PRK15407        217 FYPAHHITMG-E-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITD  294 (438)
T ss_pred             CCCCCCcccc-C-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccH
Confidence                667755 3 4677765 4444322210                                       0233444556


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC--CCCeEe---eeceeEEEEecCC-chhHHHHHHHHHHCC
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD--IVPVVR---GKGLLNAIVLDKS-ILEVYDVCIKMKDAG  199 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~g  199 (242)
                      +.++.++..|+.+  ++..+..+++.+++.+.| +.++..  .....+   ...+.+.+.+... ..+.+++.++|.++|
T Consensus       295 l~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~G  371 (438)
T PRK15407        295 MQAAIGLAQLEKL--PGFIEARKANFAYLKEGL-ASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEENK  371 (438)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-ccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCC
Confidence            6666666666544  446777888888888888 665421  111111   1222333444331 135789999999999


Q ss_pred             ceeccC-----C-----------------------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         200 LVTKPI-----S-----------------------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       200 i~~~~~-----~-----------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      |-.++.     .                       ...+-+=++...+++|+++.++.|++.++
T Consensus       372 I~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        372 IGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            966421     0                       01233333456789999999999998774

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.17  E-value=1.1e-08  Score=94.30  Aligned_cols=217  Identities=15%  Similarity=0.148  Sum_probs=136.7

Q ss_pred             Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCE
Q psy6548          11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus        11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~   85 (242)
                      |+++  +.+.+  .++++|++..+.+ .|.+.++   +++|.++|+++|.++++|.++.. ....    . ..-....|+
T Consensus       614 Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l----~-~Pg~~GaDi  684 (939)
T TIGR00461       614 DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGL----T-SPGDLGADV  684 (939)
T ss_pred             CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCC----C-CccccCCCE
Confidence            4555  33433  5899999988877 4655543   99999999999999999999842 2111    1 111345799


Q ss_pred             EEee--cccc-----CCccchheeEeChhhhhccCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHhcc
Q psy6548          86 VILG--KALS-----GGLYPISAVLADDEVMGTLVPGTHG----------------STYGGNPLACKLAMTALDVILEEN  142 (242)
Q Consensus        86 ~~~s--K~~~-----~g~~~~g~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~a~a~l~~~~~~~  142 (242)
                      ++++  |+|+     || ..+|.+.+++++..++.....+                ....++...+..++..+..+-.++
T Consensus       685 ~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~G  763 (939)
T TIGR00461       685 CHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEG  763 (939)
T ss_pred             EEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHH
Confidence            8875  9888     66 6789998887765544322111                111233333344455556554444


Q ss_pred             H---HHHHHHHHHHHHHHHHhhcCCCCCCeEe--eeceeEEEEecCC----chhHHHHHHHHHHCCceeccC---CCCEE
Q psy6548         143 M---IENAYKMGEIFRSELRSRLSPDIVPVVR--GKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKPI---SNNII  210 (242)
Q Consensus       143 ~---~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~~---~~~~l  210 (242)
                      +   .+..-.+++++.++| +.... ......  ....-+.++++..    +....++.++|.+.|++....   ..+.+
T Consensus       764 L~~~a~~ailnAnYl~~rL-~~~~~-~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~l  841 (939)
T TIGR00461       764 LPKASVVAILNANYMATRL-KDHYP-ILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTL  841 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hccCc-ccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeE
Confidence            3   344556888999999 44221 111100  1122344555421    146789999999999986321   23467


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         211 RLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      -+.|+-..+++|+|++++.+.++..++.+
T Consensus       842 miepTE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       842 MVEPTESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             EEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence            77787889999999999999888777644

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.17  E-value=8.1e-09  Score=86.34  Aligned_cols=209  Identities=20%  Similarity=0.281  Sum_probs=130.9

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG-   89 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s-   89 (242)
                      .+. +...+++|++|+.-..++..    .+   +++|.++|++||++||.|.+|+ +|..-++   +..|-..|+.+|| 
T Consensus       112 ~~~ie~aIt~~tKAIipVhl~G~~----~d---m~~i~~la~~~~l~vIEDaAqa-~Ga~y~g---k~vGt~Gd~~~fSF  180 (374)
T COG0399         112 PDLIEAAITPRTKAIIPVHLAGQP----CD---MDAIMALAKRHGLPVIEDAAQA-HGATYKG---KKVGSFGDIGAFSF  180 (374)
T ss_pred             HHHHHHHcccCCeEEEEehhccCC----CC---HHHHHHHHHHcCCeEEEEcchh-ccCeecC---cccccccceEEEEe
Confidence            444 66667779999988876643    22   9999999999999999999996 3322111   2224455777766 


Q ss_pred             ---ccccCCccchheeEeC-hhhhhccCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Q psy6548          90 ---KALSGGLYPISAVLAD-DEVMGTLVPG----------------THGSTYGGNPLACKLAMTALDVILEENMIENAYK  149 (242)
Q Consensus        90 ---K~~~~g~~~~g~~~~~-~~~~~~l~~~----------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~  149 (242)
                         |.++.| - .|.++.+ +++++.++..                ..++++..+-+.++.+++-|+.+  +++.+..++
T Consensus       181 ~~~K~ittg-E-GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~  256 (374)
T COG0399         181 HATKNLTTG-E-GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRRE  256 (374)
T ss_pred             cCCCCcccc-C-ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence               999854 2 3455554 6677666532                12233333444544444444432  557778888


Q ss_pred             HHHHHHHHHHhhcCC-CCCCeEeee---ceeEEEEecCCchhHHHHHHHHHHCCce----eccC----------------
Q psy6548         150 MGEIFRSELRSRLSP-DIVPVVRGK---GLLNAIVLDKSILEVYDVCIKMKDAGLV----TKPI----------------  205 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~gi~----~~~~----------------  205 (242)
                      +.+.+.+.| +.++. .........   -.+..+.++..+...+.+...|.++||.    ..|.                
T Consensus       257 ~a~~Y~~~l-~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~  335 (374)
T COG0399         257 IAQIYAEAL-KGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGD  335 (374)
T ss_pred             HHHHHHHHh-hcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCC
Confidence            888888888 76642 112222221   1223333443224568899999999555    3331                


Q ss_pred             -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 -------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                             ....+++=++...+++++++.++.|++++.+
T Consensus       336 lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         336 LPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence                   1245777667788999999999999988754

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.16  E-value=3.1e-09  Score=89.65  Aligned_cols=213  Identities=13%  Similarity=0.085  Sum_probs=132.4

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCccCcccccccCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .++.++|+..-+ +.++..+  .+++...-.++|...|    +++   ++++ +++++|+|.+-+ +|  +.++.++  +
T Consensus       110 ~~l~~~~g~~~~~~~ve~~~--~v~~vhnETSTGv~np----v~~---i~~~~~~~lliVDavSs-~g--~~~l~~d--~  175 (374)
T TIGR01365       110 RVLEAEYGKLPDLKKVDFKN--DVVFTWNGTTSGVRVP----NGD---FIPADREGLTICDATSA-AF--AQDLDYH--K  175 (374)
T ss_pred             EEEcCCCCCCCCHHHcCCCC--CEEEecCCCchheecc----ccc---cccccCCCcEEEEccch-hc--CCCCChh--H
Confidence            355678876554 4333221  2455555566675555    333   3333 589999998765 32  2233333  2


Q ss_pred             CCCCEEEee--ccccCCccchheeEeChhhhhccCCC----------------------CCCCCCCC-CHHHHHHHHHHH
Q psy6548          81 VRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG----------------------THGSTYGG-NPLACKLAMTAL  135 (242)
Q Consensus        81 ~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~----------------------~~~~~~~~-~~~~~~~a~a~l  135 (242)
                        .|+++.|  |++++. -++++++.+++.+++....                      ..+++... +...+.++..++
T Consensus       176 --iDv~~tgsQK~L~~p-pGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l  252 (374)
T TIGR01365       176 --LDVVTFSWQKVLGGE-GAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDAL  252 (374)
T ss_pred             --CcEEEEechhccCCC-CceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHH
Confidence              6777754  999955 5688899998887665421                      01222222 233555555666


Q ss_pred             HHHHhc----cHHHHHHHHHHHHHHHHHhhcC-CCCCCe-Ee-eeceeEEEEecCCch-----h-----HHHHHHHHHHC
Q psy6548         136 DVILEE----NMIENAYKMGEIFRSELRSRLS-PDIVPV-VR-GKGLLNAIVLDKSIL-----E-----VYDVCIKMKDA  198 (242)
Q Consensus       136 ~~~~~~----~~~~~~~~~~~~l~~~l~~~l~-~~~~~~-~~-~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~  198 (242)
                      +.++++    +..++.+++++.+++.+ +.++ ...... .. ..-....+.++.+..     +     ..++.+.|.++
T Consensus       253 ~~i~~egGle~~~~Rh~~~a~~l~~~l-~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  331 (374)
T TIGR01365       253 KWAESIGGLKPLIARADDNLAVLEAFV-AKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKE  331 (374)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHHH-HHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHC
Confidence            655543    35677888999999999 7777 322221 11 222334455533311     3     68899999999


Q ss_pred             CceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         199 GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       199 gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      |+.+.++    .++.+||..-...+.+|++.+++.|+=+
T Consensus       332 gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~  370 (374)
T TIGR01365       332 GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWA  370 (374)
T ss_pred             CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence            9999865    2478999887788999999999998644

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.16  E-value=7.7e-10  Score=93.81  Aligned_cols=196  Identities=21%  Similarity=0.270  Sum_probs=118.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~   96 (242)
                      .+++++|++|.+.|+++.+.+    +++|+++|++++  +++|.++..      +......+...|++++|  |.++|. 
T Consensus       146 ~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s------~~~~~pl~~gaDivv~S~tK~i~G~-  212 (384)
T PRK06434        146 PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS------PYNQNPLDLGADVVIHSATKYISGH-  212 (384)
T ss_pred             CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC------cccCCchhcCCCEEEeecccccCCC-
Confidence            447999999999999886654    999999999998  466998731      11112224567888865  999852 


Q ss_pred             cc--hheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC---CCC--
Q psy6548          97 YP--ISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD---IVP--  168 (242)
Q Consensus        97 ~~--~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~--  168 (242)
                      -.  .|.++. ++++.+.++..........+++.++.++..++.+  +...++.++++..+.+.| +..+..   ...  
T Consensus       213 ~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L-~~~p~v~~V~yPgl  289 (384)
T PRK06434        213 SDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFL-RDSKKISNVYYPDT  289 (384)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHH-HcCCCccEEECCCh
Confidence            21  444545 4556555542211112233555444444334433  335677788888899999 665531   000  


Q ss_pred             -----eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-----------------CCCEEEEeccC
Q psy6548         169 -----VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPAL  216 (242)
Q Consensus       169 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~  216 (242)
                           ...+.|.++.|++... ..+..|.+.|.--.+.++          |.                 ..+.+|++   
T Consensus       290 ~~~~~~~~g~g~~~sf~l~~~-~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRls---  365 (384)
T PRK06434        290 EIGKKVLRGFGGMLSFELRSM-EDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFS---  365 (384)
T ss_pred             HHHHHhcCCCCceEEEEECCH-HHHHHHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEE---
Confidence                 1134678899998753 556667666642111111          10                 24689999   


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q psy6548         217 NITEQELREGLDIIINTIN  235 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~  235 (242)
                       ...|+.+.+++.|++++.
T Consensus       366 -vGlEd~~dLi~dl~~Al~  383 (384)
T PRK06434        366 -IGIEDIDDLIKDIENALS  383 (384)
T ss_pred             -eCcCCHHHHHHHHHHHhc
Confidence             344577777777777764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.09  E-value=5.1e-09  Score=88.63  Aligned_cols=201  Identities=17%  Similarity=0.222  Sum_probs=122.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee----c
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG----K   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s----K   90 (242)
                      +...+.++++|++.+.++...       .+++|.++|++||++||.|.+|+ +|..-.+   ...|-..|+.+||    |
T Consensus       107 ~~~i~~~t~ai~~~h~~G~~~-------d~~~i~~~~~~~~i~lIeD~a~a-~g~~~~g---~~~G~~gd~~~fSf~~~K  175 (363)
T PF01041_consen  107 EKAITPKTKAILVVHLFGNPA-------DMDAIRAIARKHGIPLIEDAAQA-FGARYKG---RPVGSFGDIAIFSFHPTK  175 (363)
T ss_dssp             HHHHHTTEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-TT-EETT---EETTSSSSEEEEESSTTS
T ss_pred             HHHhccCccEEEEecCCCCcc-------cHHHHHHHHHHcCCcEEEccccc-cCceeCC---EeccCCCCceEecCCCCC
Confidence            444567889999988766432       29999999999999999999996 3221111   2234456888876    9


Q ss_pred             cccCCccchheeEeC-hhhhhccCCC---C--------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy6548          91 ALSGGLYPISAVLAD-DEVMGTLVPG---T--------------HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE  152 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~-~~~~~~l~~~---~--------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~  152 (242)
                      .+.+| - .|+++.+ +++.++++..   .              .+..+..+.+..+.+++.|+.+  ++..+..+++.+
T Consensus       176 ~i~~g-e-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~  251 (363)
T PF01041_consen  176 IITTG-E-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQ  251 (363)
T ss_dssp             SS-SS-S--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHH
T ss_pred             CCcCC-C-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHH
Confidence            88754 2 4666665 4555554321   0              2334455666666566555533  446677888888


Q ss_pred             HHHHHHHhhcCCC----CCCeEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC--------------------
Q psy6548         153 IFRSELRSRLSPD----IVPVVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS--------------------  206 (242)
Q Consensus       153 ~l~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~--------------------  206 (242)
                      .+++.| +.++..    ...... ...+.+.+.+++.. .+.+++.+.|.++||.+.+..                    
T Consensus       252 ~y~~~L-~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~  330 (363)
T PF01041_consen  252 RYREAL-AGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGD  330 (363)
T ss_dssp             HHHHHH-TTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSS
T ss_pred             HHHHHH-hcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCC
Confidence            888988 666531    111111 23334455555431 257889999999999996431                    


Q ss_pred             --------CCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         207 --------NNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       207 --------~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                              ...+.+-.+...+++++++.++.|+
T Consensus       331 ~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  331 LPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             SHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence                    1256666677889999999988774

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.09  E-value=8.9e-10  Score=92.88  Aligned_cols=201  Identities=16%  Similarity=0.166  Sum_probs=119.0

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEEee--cc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVILG--KA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~s--K~   91 (242)
                      +.+...++++|++-....+   ...   .+++++++|++.|++|++|-+| +|+...|. +.-+ ++. .|+++.|  |+
T Consensus       163 ~~a~~~kPklIi~G~S~y~---~~~---d~~~~reIad~vga~l~~D~sH~~GLIa~g~-~~~P-~~~-ADvvt~sThKt  233 (399)
T PF00464_consen  163 KLAKEHKPKLIICGASSYP---RPI---DFKRFREIADEVGAYLMADISHIAGLIAGGL-FPNP-FPY-ADVVTGSTHKT  233 (399)
T ss_dssp             HHHHHH--SEEEEE-SSTS---S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS-S--G-CCT-SSEEEEESSGG
T ss_pred             HHHhhcCCCEEEECchhcc---Ccc---CHHHHHHHHHhcCcEEEecccccccceehhe-ecCc-ccc-ceEEEeecccc
Confidence            4455678888888774322   222   2899999999999999999999 66644432 1111 122 6888866  99


Q ss_pred             ccCCccchheeEeC--------------hhhhhccCCCCCCCCCCCCHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHH
Q psy6548          92 LSGGLYPISAVLAD--------------DEVMGTLVPGTHGSTYGGNPLACKLAM-TALDVILE---ENMIENAYKMGEI  153 (242)
Q Consensus        92 ~~~g~~~~g~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~a~-a~l~~~~~---~~~~~~~~~~~~~  153 (242)
                      |.|+  +.|.++.+              +++.+.+......+..+++-.-..+++ .++....+   .++.+++.++.+.
T Consensus       234 l~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~  311 (399)
T PF00464_consen  234 LRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKA  311 (399)
T ss_dssp             G-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             cccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            9985  67888888              677777765433333333323222222 23443322   3577888899999


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C-----CCCEEEEecc----CcCCH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPA----LNITE  220 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~lR~~~~----~~~t~  220 (242)
                      |.+.| ++.+-.+... ....+++++++...+.+..+..+.|.+.||.+..    .     ....||+..+    ....+
T Consensus       312 La~~L-~~~G~~v~~g-gTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e  389 (399)
T PF00464_consen  312 LAEAL-QERGFKVVTG-GTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKE  389 (399)
T ss_dssp             HHHHH-HHTT-EEGGG-S-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--H
T ss_pred             HHHHH-hhCCcEEEEC-CCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCH
Confidence            99999 6666433322 2345788999876435678888899999999952    2     2468999743    34566


Q ss_pred             HHHHHHHH
Q psy6548         221 QELREGLD  228 (242)
Q Consensus       221 e~i~~~~~  228 (242)
                      +|++++.+
T Consensus       390 ~dm~~iA~  397 (399)
T PF00464_consen  390 EDMKEIAE  397 (399)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666544

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN03032 serine decarboxylase; Provisional

Probab=99.08  E-value=2.3e-08  Score=84.46  Aligned_cols=191  Identities=13%  Similarity=0.043  Sum_probs=123.0

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC-----CEEEEecccccc-CccC---cccccccCCCCCCEEEee--
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-----VLFIADEVQTGL-GRTG---KLLAIHYEDVRPDIVILG--   89 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~-----~~li~De~~~~~-~~~g---~~~~~~~~~~~~~~~~~s--   89 (242)
                      ++.++++.-..+++|.+-|    +++|+++|++||     +++.+|.++.++ .+.-   ..+.+   ....|.++++  
T Consensus       161 ~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~H  233 (374)
T PLN03032        161 KPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGH  233 (374)
T ss_pred             CCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcc
Confidence            6788888888889998766    999999999997     489999999653 1110   01111   1236767754  


Q ss_pred             ccccCCccchheeEeChhhhhccCCCC-----CCCCCCC--CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Q psy6548          90 KALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGG--NPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELR  159 (242)
Q Consensus        90 K~~~~g~~~~g~~~~~~~~~~~l~~~~-----~~~~~~~--~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~~l~  159 (242)
                      |.++.+ .++|.++..+...+.+....     .-.+..+  +....+..+++++.+-.++   ..++..++++++.+.| 
T Consensus       234 K~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l-  311 (374)
T PLN03032        234 KFLGCP-MPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRL-  311 (374)
T ss_pred             cccCCC-cCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-
Confidence            988867 78999988876665443210     1122222  3345566677777665443   5667777888888888 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      ++.+  ......+....+.|.-+..    +.     ..+|..+.+. ++.+|++....++.+.++++++.|++
T Consensus       312 ~~~~--~~~~~~p~~~~V~f~~~~~----~~-----~~~~w~l~~~-~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        312 TEAG--LTCRLNELSSTVVFERPMD----EA-----FIKKWQLACE-GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             HhCC--CcEEECCCceEEEEcCCCc----Hh-----Hhheeeeccc-CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            5543  2222233344454443332    11     2367777764 46899987777888999999988865

>KOG0053|consensus

Probab=99.04  E-value=7.4e-09  Score=86.41  Aligned_cols=212  Identities=14%  Similarity=0.119  Sum_probs=123.1

Q ss_pred             CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548           8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus         8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +-+|++. ....+.++.+|++|++-||...++.    +++++++|+++|+++++|++..+.      ...+.+....|++
T Consensus       148 d~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~lGADIV  217 (409)
T KOG0053|consen  148 DVDDLKKILKAIKENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPLGADIV  217 (409)
T ss_pred             chhhHHHHHHhhccCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhcCCCEE
Confidence            3344555 4455569999999999999985553    999999999999999999987532      2233445568998


Q ss_pred             E--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          87 I--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        87 ~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +  .+|.++|.- .=.|.++.+ +++...+......-.+..+|..+.-....++.+.-  ..++..+++..+...| ...
T Consensus       218 ~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~l--Ri~~~~ena~~~A~~L-e~~  294 (409)
T KOG0053|consen  218 VHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLHL--RINKHSENALKIALLL-EAH  294 (409)
T ss_pred             EEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchhhh--hHHHHHHHHHHHHHHh-hhC
Confidence            8  679999531 113445564 66666665432222234555554433333332211  2334444555555666 333


Q ss_pred             CC-------CCCCe---------E-eeeceeEEEEecCCchhHHHHHHHHHH--CCceecc-------------------
Q psy6548         163 SP-------DIVPV---------V-RGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVTKP-------------------  204 (242)
Q Consensus       163 ~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~~~-------------------  204 (242)
                      +.       +....         . .+.|.+..+..... ..+.+|++.|+=  .+.-+..                   
T Consensus       295 ~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~-~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~~~e~  373 (409)
T KOG0053|consen  295 PKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNE-EHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHASELEE  373 (409)
T ss_pred             CceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCH-HHHHHHHHhhhhhhcccCcCccchhhcchhhhccCCCHHH
Confidence            32       11111         1 11233333333333 566667776642  2222211                   


Q ss_pred             -----CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 -----ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 -----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                           ..++.+|+|+    .-|+++.+++.|.++++.+
T Consensus       374 ~~~~Gi~~~LVRvSV----GiEd~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  374 REKFGIDPNLVRVSV----GIEDIEDLIKDFQQALEKA  407 (409)
T ss_pred             HHhcCCCCCcEEEEe----ccCCHHHHHHHHHHHHHhh
Confidence                 1467899993    3578888888888887764

>PLN02590 probable tyrosine decarboxylase

Probab=99.02  E-value=3.2e-08  Score=87.11  Aligned_cols=212  Identities=13%  Similarity=0.083  Sum_probs=124.7

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~   98 (242)
                      +.+|+..---.++|.+=|    +++|+++|++||+++.+|.+|.|+............|+ ..|-++  ..|++..+ +.
T Consensus       288 P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~~  362 (539)
T PLN02590        288 PFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-QT  362 (539)
T ss_pred             cEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-cC
Confidence            444444444555564444    99999999999999999999987532211111011233 346555  66999977 78


Q ss_pred             hheeEeChh--hhh-------ccCCCC-------CCC--CCCC-CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Q psy6548          99 ISAVLADDE--VMG-------TLVPGT-------HGS--TYGG-NPLACKLAMTALDVILEEN---MIENAYKMGEIFRS  156 (242)
Q Consensus        99 ~g~~~~~~~--~~~-------~l~~~~-------~~~--~~~~-~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~  156 (242)
                      +|.++...+  +..       ++....       ...  +... -.+.....+.+++.+-.++   ++.+.-++++++.+
T Consensus       363 cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~  442 (539)
T PLN02590        363 CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFED  442 (539)
T ss_pred             EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            898877642  222       221100       000  1111 1233444566677654444   45555567888888


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceec-c---CCCCEEEEec-cCcCCHHHHH
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTK-P---ISNNIIRLSP-ALNITEQELR  224 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~-~---~~~~~lR~~~-~~~~t~e~i~  224 (242)
                      .| ++.+. +....+..-.++.|.+....       ....++.++|.+.|.... +   .+..+||++. +...++++++
T Consensus       443 ~l-~~~~~-fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~  520 (539)
T PLN02590        443 YV-AQDPS-FEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVT  520 (539)
T ss_pred             HH-hcCCC-eEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHH
Confidence            88 54442 11111223345555554310       224567777777776653 2   2567899986 5556789999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy6548         225 EGLDIIINTINTMAAK  240 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~~  240 (242)
                      .+++.|.+...++.++
T Consensus       521 ~~~~~i~~~a~~~~~~  536 (539)
T PLN02590        521 EAWQIIQKHASKFTRN  536 (539)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999988877654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.00  E-value=4.7e-08  Score=91.12  Aligned_cols=194  Identities=12%  Similarity=0.106  Sum_probs=118.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc---c-C
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL---S-G   94 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~---~-~   94 (242)
                      .+++++ ....+.+|.+.+    +++|.++|+++|+++++ .++. ++-.+-. ...  .+..|+++.+  |+.   | |
T Consensus       234 ~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l~-~pg--e~GADi~vgsgqKwg~P~G~G  303 (993)
T PLN02414        234 DVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTMLK-PPG--EWGADIVVGSAQRFGVPMGYG  303 (993)
T ss_pred             ceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCCC-CHh--hccCcEEEECCCccccCCCCC
Confidence            455554 344456776765    99999999999999999 4442 1111100 111  3456888843  543   2 4


Q ss_pred             CccchheeEeChhhhhccCCCCCCCC------------------------CCCCH---HHHHHHHHHHH--HHHh---cc
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGST------------------------YGGNP---LACKLAMTALD--VILE---EN  142 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~------------------------~~~~~---~~~~~a~a~l~--~~~~---~~  142 (242)
                      | ..+|++..++++...+.....+++                        .+.|.   .++.+++++..  ++..   ++
T Consensus       304 G-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~  382 (993)
T PLN02414        304 G-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT  382 (993)
T ss_pred             C-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHH
Confidence            4 448999999887654432111110                        01122   13333333221  1112   23


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      +.+++.++..+++++| +.++-.....  ...-.+.+.++    +..++.++|.++||.++....+.+|+|++..+|++|
T Consensus       383 Ia~ri~~la~~l~~~L-~~~G~~~~~~--~~f~~vt~~~~----~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~ed  455 (993)
T PLN02414        383 IAQRVHGLAGVFAAGL-KKLGFQVQSL--PFFDTVKVKCS----DADAIADAAAKVGINLRVVDANTVTVSFDETTTLED  455 (993)
T ss_pred             HHHHHHHHHHHHHHHH-hhcCCccCCC--CCcCeEEEecC----CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHH
Confidence            5677888889999999 6655222221  11123344443    347899999999999987767789999999999999


Q ss_pred             HHHHHHHHHH
Q psy6548         223 LREGLDIIIN  232 (242)
Q Consensus       223 i~~~~~~l~~  232 (242)
                      |+++++.|..
T Consensus       456 Id~L~~~l~~  465 (993)
T PLN02414        456 VDKLFKVFAG  465 (993)
T ss_pred             HHHHHHHHcc
Confidence            9999999963

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.99  E-value=5.2e-08  Score=90.99  Aligned_cols=195  Identities=13%  Similarity=0.117  Sum_probs=123.3

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--cc---cc-
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KA---LS-   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~---~~-   93 (242)
                      ++++++++ .+.+.+|.+.+    +++|.++|+++|+++++|-.+..++-. .  ...  .+..|+++.+  |+   +| 
T Consensus       205 ~~~~~vlv-q~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--~pg--e~GaDi~vgs~qkfg~P~g~  274 (954)
T PRK05367        205 DDVFGVLL-QYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--PPG--EMGADIAVGSAQRFGVPMGF  274 (954)
T ss_pred             ccEEEEEE-ecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--Chh--hcCCCEEEeeCcccCCCCCC
Confidence            45666544 44567786765    999999999999999999866322111 1  111  3456888844  54   12 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCC--------C----------------CCC---HHHHHHHHHH--HHHHHh---c
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGST--------Y----------------GGN---PLACKLAMTA--LDVILE---E  141 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~--------~----------------~~~---~~~~~~a~a~--l~~~~~---~  141 (242)
                      || -.+|++..++++...+.+...+++        +                +.|   .-++.++.++  +.++..   +
T Consensus       275 GG-P~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~  353 (954)
T PRK05367        275 GG-PHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLK  353 (954)
T ss_pred             CC-CCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            34 458999999888777764322211        0                011   1112222222  122323   2


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      ++.+++..+..++++.| +..+-.....  ...-.+.+.++   .+..++.++|.++||.++....+.+|++++...|++
T Consensus       354 ~Ia~~~~~la~~l~~~L-~~~G~~~~~~--~~f~~~~~~~~---~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~  427 (954)
T PRK05367        354 AIARRVHRLAAILAAGL-RALGLEVVHD--SFFDTLTVEVG---GDAAAVLARALAAGINLRRVDDDHVGISLDETTTRE  427 (954)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCcccCCC--CCCCeEEEeCC---CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHH
Confidence            45677888888889988 5544222111  11122333432   257899999999999997776788999999999999


Q ss_pred             HHHHHHHHHH
Q psy6548         222 ELREGLDIII  231 (242)
Q Consensus       222 ~i~~~~~~l~  231 (242)
                      ||+++++.|.
T Consensus       428 did~l~~~l~  437 (954)
T PRK05367        428 DLAALLAVFG  437 (954)
T ss_pred             HHHHHHHHHc
Confidence            9999999996

>PLN02452 phosphoserine transaminase

Probab=98.99  E-value=8.4e-08  Score=80.95  Aligned_cols=200  Identities=13%  Similarity=0.073  Sum_probs=135.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      +++...+.+.+.-..+|....+   ++++.      ++++|+|-+.+ +  .+.+..++.+++  ++.+.-|.+| + .+
T Consensus       143 ~~~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss-~--g~~pidv~~~~v--~~~saqK~lG-P-~G  206 (365)
T PLN02452        143 TPDAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSN-F--LSKPVDVSKYGV--IYAGAQKNVG-P-SG  206 (365)
T ss_pred             CCCCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCcc-c--cCcccCHHHcCE--EEEecccccC-C-CC
Confidence            4568888888888888854332   44332      38999999886 3  223344445544  4544559997 3 55


Q ss_pred             hheeEeChhhhhccCCC-----------CCCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhhc
Q psy6548          99 ISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|.++.++++++++.+.           .....+ +.+.....+..++++.++++    .+.++.+++.+.+++.| ++.
T Consensus       207 l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l-~~~  285 (365)
T PLN02452        207 VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI-DES  285 (365)
T ss_pred             eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HhC
Confidence            88999999998776542           111222 34455677777788888763    46778888999999999 543


Q ss_pred             CC--CCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         163 SP--DIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       163 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..  ....... .....+.|.++.. ...++|.+.+.++|++..++.  -+.+|++.=...+.++++++++.+++.-++
T Consensus       286 ~G~y~~~~~~~~rs~~~vsF~~~~~-~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        286 NGFYVCPVEKSVRSLMNVPFTLGGS-ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             CCcccCCCChHHhCCeEEEEEcCCc-hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            21  1111111 2345677787776 578899999999999998763  234999977788999999999988876543

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.96  E-value=1.2e-07  Score=78.36  Aligned_cols=208  Identities=17%  Similarity=0.202  Sum_probs=136.8

Q ss_pred             hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE--eec
Q psy6548          15 KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI--LGK   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~--~sK   90 (242)
                      +.+.+.+++.|+.=. .++.   ..+    +++++++|++.|++|++|-+| +|+...|.. . .-.. ..|+++  ..|
T Consensus       160 k~a~e~kPK~ii~G~SaY~r---~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p-~P~~-~AdvVTtTTHK  229 (413)
T COG0112         160 KLAKEVKPKLIIAGGSAYSR---PID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVH-P-NPLP-HADVVTTTTHK  229 (413)
T ss_pred             HHHHHhCCCEEEECcccccc---ccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccC-C-CCCC-ccceEeCCccc
Confidence            555577777777644 3332   232    999999999999999999999 776444431 1 1112 267887  449


Q ss_pred             cccCCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          91 ALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMT-ALDVILE---ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      +|.|+  |.|.++++ +++...+....+.+..+++..-..++.+ +++...+   +++.+++.++++.+.+.| ...+-.
T Consensus       230 TlrGP--rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l-~~~G~~  306 (413)
T COG0112         230 TLRGP--RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEAL-KERGFK  306 (413)
T ss_pred             CCCCC--CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-HHcCCe
Confidence            99975  67888888 4888888875555555554432223332 2333333   356788889999999999 665533


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----------CCCCEEEEecc----CcCCHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPA----LNITEQELREGLDIII  231 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~lR~~~~----~~~t~e~i~~~~~~l~  231 (242)
                      +.... ....++.+++...+...+.....|-+-||.+..          ..+..||+..+    ..+.++|+++..+.+.
T Consensus       307 vvsGg-TdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~  385 (413)
T COG0112         307 VVSGG-TDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIA  385 (413)
T ss_pred             EecCC-ccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHH
Confidence            32211 124677788874334567777777788999852          23567999643    4567889999888888


Q ss_pred             HHHHH
Q psy6548         232 NTINT  236 (242)
Q Consensus       232 ~~l~~  236 (242)
                      +++..
T Consensus       386 ~vl~~  390 (413)
T COG0112         386 DVLDG  390 (413)
T ss_pred             HHHhc
Confidence            88765

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.95  E-value=2e-09  Score=88.53  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=80.2

Q ss_pred             Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEE
Q psy6548          11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~   86 (242)
                      |+++  +.+. ..+++++++..+ +.+|.+.+    +++|+++|++||+++++||+|.. +...+. ..........|++
T Consensus       141 ~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~-~~~~~~~~~~div  214 (294)
T cd00615         141 PPETFKKALIEHPDAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI-LPSSAAMAGADIV  214 (294)
T ss_pred             CHHHHHHHHHhCCCceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcc-cCcchhhcCCcEE
Confidence            4455  4443 356777777754 56786665    89999999999999999999964 322221 1111112245766


Q ss_pred             E--eeccccCCccch-heeEeChhhh--hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          87 I--LGKALSGGLYPI-SAVLADDEVM--GTLVPG-THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        87 ~--~sK~~~~g~~~~-g~~~~~~~~~--~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      +  ++|+++|  ++. |++..+.+..  +++... ....+.+.+.+.+++..++++.+..  +++.++..++...+|+.|
T Consensus       215 ~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l  292 (294)
T cd00615         215 VQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEI  292 (294)
T ss_pred             EEchhcccch--HhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            6  6699864  444 4443443311  112111 1122334455555555566665543  345666777777777766

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.91  E-value=1.3e-07  Score=74.24  Aligned_cols=202  Identities=16%  Similarity=0.221  Sum_probs=124.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~   97 (242)
                      +.+++.++..+.++.|....    .+.++++|+++|++++...+|+ .|+..    .....+.+|+++-|  |++++. -
T Consensus       155 ~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp----vs~ke~g~DFiVgSGHKsmAAs-~  224 (382)
T COG1103         155 DPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP----VSGKEIGADFIVGSGHKSMAAS-A  224 (382)
T ss_pred             CCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc----ccccccCCCEEEecCccchhcc-C
Confidence            45899999999999996553    8889999999999999999996 33222    22335678999865  899966 6


Q ss_pred             chheeEeChhhhhccCCCC-----------CCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          98 PISAVLADDEVMGTLVPGT-----------HGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      |+|.+..++++.+...+.+           .+-|..+-  .+....|++-...+  ..+.+.+ ++++++.+.| ..++.
T Consensus       225 PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGa--pivTlmASfP~V~eRVkrWdeEv-~kaR~fv~el-Ekigg  300 (382)
T COG1103         225 PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGA--PIVTLMASFPHVVERVKRWDEEV-EKARWFVAEL-EKIGG  300 (382)
T ss_pred             CeeEEeehhHHHHHHHhhcccccccceeeeecccccCc--hHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHH-HHhhh
Confidence            8999999988877664422           11111111  22223344433322  1222222 3456666666 55542


Q ss_pred             CCC-CeEeeeceeEEEEecCCchhHH-------HHHHHHHHCCcee-ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         165 DIV-PVVRGKGLLNAIVLDKSILEVY-------DVCIKMKDAGLVT-KPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~gi~~-~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ... ...+-..-...|+.+.-...++       =+++.|.++||.- .|+-...+.++ .+..+.|+++..++.++++++
T Consensus       301 ~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~s-vyGl~~Eqve~V~~afkeI~e  379 (382)
T COG1103         301 VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLS-VYGLSWEQVEYVVDAFKEIAE  379 (382)
T ss_pred             HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEE-eecCCHHHHHHHHHHHHHHHH
Confidence            111 1111222234444444211111       1577888888764 35555667776 356799999999999999887


Q ss_pred             H
Q psy6548         236 T  236 (242)
Q Consensus       236 ~  236 (242)
                      +
T Consensus       380 k  380 (382)
T COG1103         380 K  380 (382)
T ss_pred             h
Confidence            6

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.89  E-value=2.9e-07  Score=78.80  Aligned_cols=211  Identities=14%  Similarity=0.101  Sum_probs=123.6

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c---cC------ccCcccc--cccCCCCCCEEEe
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LG------RTGKLLA--IHYEDVRPDIVIL   88 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~---~~------~~g~~~~--~~~~~~~~~~~~~   88 (242)
                      +++.+.++...|..|+.+.+.+.++++.++|++||+.+|.|.++. |   |-      ..+....  .....-..|.++|
T Consensus       177 ~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~  256 (460)
T PRK13237        177 NIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTM  256 (460)
T ss_pred             ccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEE
Confidence            455666666666665566666789999999999999999999994 2   11      1111100  0111123577776


Q ss_pred             e--ccccCCccchheeEe-ChhhhhccCCCCC---CC-CCCCC-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          89 G--KALSGGLYPISAVLA-DDEVMGTLVPGTH---GS-TYGGN-PLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        89 s--K~~~~g~~~~g~~~~-~~~~~~~l~~~~~---~~-~~~~~-~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      |  |.++++ . .|+++. +++++++++....   +. ++.+- .--+.+....++...++++..+.-...++|.+.| .
T Consensus       257 S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L-~  333 (460)
T PRK13237        257 SGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKL-L  333 (460)
T ss_pred             eCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHH-H
Confidence            5  777744 2 345544 5778887775421   21 33221 1122221113443434456666667778888888 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHHC-Cceec-------cC----------CCCEEEEec-
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKDA-GLVTK-------PI----------SNNIIRLSP-  214 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~-gi~~~-------~~----------~~~~lR~~~-  214 (242)
                      +.+  ++...+..|+-++++...       ...-++.++-.|..+ ||=..       ..          .-..+|++. 
T Consensus       334 ~~G--vpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaip  411 (460)
T PRK13237        334 AAG--VPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIP  411 (460)
T ss_pred             HCC--CceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccc
Confidence            544  333335566777765332       224566777777643 43221       11          125799974 


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         215 ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .-.-|.+++|...++|..+.++
T Consensus       412 rr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        412 RRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             cccccHHHHHHHHHHHHHHHHh
Confidence            4556999999999999887765

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.89  E-value=4.3e-07  Score=76.18  Aligned_cols=208  Identities=14%  Similarity=0.078  Sum_probs=136.4

Q ss_pred             CCCChhh-hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548           8 KSKQVPA-KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus         8 ~~~d~~~-~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      +|+.+.. ..+. +.+...+.+.+.-..+|...+         ++.+.+++++|+|-+-+ +  .+.++.++.|    |+
T Consensus       128 ~~~~~p~~~~~~~~~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~--~s~pid~~~~----dv  191 (364)
T PRK12462        128 GYRTLPSLAELDWDARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-F--MSRPFDVEAY----GM  191 (364)
T ss_pred             CCCcCCCHHHhccCCCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-h--hCCCCChHHc----cE
Confidence            4444433 3333 345777888888888886554         23334789999997754 3  2233333333    67


Q ss_pred             EEee--ccccCCccchheeEeChhhhhccCCC-----------CCCCCC-CCCHHHHHHHHHHHHHHHhc--c---HHHH
Q psy6548          86 VILG--KALSGGLYPISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE--N---MIEN  146 (242)
Q Consensus        86 ~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~a~a~l~~~~~~--~---~~~~  146 (242)
                      +..|  |++| + -+++.++.+++++++..+.           ...+++ +.+.....++..+++.+.++  +   +.++
T Consensus       192 i~agsQKnlg-P-~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r  269 (364)
T PRK12462        192 VYAHAQKNLG-P-AGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDI  269 (364)
T ss_pred             EEeeccccCC-C-CceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            7654  9999 3 4578889999988776542           122333 34455777777788888655  3   5677


Q ss_pred             HHHHHHHHHHHHHhhcCC--CCCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHH
Q psy6548         147 AYKMGEIFRSELRSRLSP--DIVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ  221 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e  221 (242)
                      .+++++.+++.+ +....  .........+ .-+.|.+.++ ....+|.+.+.++|+.--.+  .-+.+|.+.=-.++.|
T Consensus       270 ~~~ka~~ly~~i-d~~~~~~~~~~~~~~RS~mnv~f~~~~~-~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e  347 (364)
T PRK12462        270 NARKAAMLYATL-DALNEVIDCHAHRAARSTMNVAFRFRQP-RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQ  347 (364)
T ss_pred             HHHHHHHHHHHH-HhCCCcccCCCChhhcCcceEEEEcCCH-HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHH
Confidence            778888888888 66542  1112222223 3445566665 67788999999999988654  3466999977778999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTIN  235 (242)
Q Consensus       222 ~i~~~~~~l~~~l~  235 (242)
                      +++++++-+++.-+
T Consensus       348 ~v~~L~~fm~~f~~  361 (364)
T PRK12462        348 AVSRLCAFLKDFAI  361 (364)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888776544

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.87  E-value=2.6e-07  Score=81.39  Aligned_cols=200  Identities=17%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEee--ccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVILG--KALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~s--K~~~~g~~~   98 (242)
                      +.+|+.....+.+|.+-|    +++|+++|++||+++++|.+|.+.............++ ..|.++++  |++.++ ++
T Consensus       266 ~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~g  340 (522)
T TIGR03799       266 PLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-MG  340 (522)
T ss_pred             cEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-cc
Confidence            333443344556787776    99999999999999999999975311111000011243 56888865  999988 88


Q ss_pred             hheeEeC-hhhhhccCCC--C---CC------CCC--CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Q psy6548          99 ISAVLAD-DEVMGTLVPG--T---HG------STY--GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        99 ~g~~~~~-~~~~~~l~~~--~---~~------~~~--~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +|.++.+ +...+.+...  +   .+      .++  +.+..+ ...+++++.+...   .+.++..++++++.+.| ++
T Consensus       341 ~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L-~~  418 (522)
T TIGR03799       341 AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLI-QQ  418 (522)
T ss_pred             cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence            9988775 4454444431  0   00      111  122233 2356777776553   45677777888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCc---------------------hhHHHHHHHHHHCCceeccC-----------CCCE
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSI---------------------LEVYDVCIKMKDAGLVTKPI-----------SNNI  209 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~gi~~~~~-----------~~~~  209 (242)
                      .+. +....++.-.++.|.+....                     .....+.+++.+.|..+...           +...
T Consensus       419 ~~~-~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~  497 (522)
T TIGR03799       419 QPD-FELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVV  497 (522)
T ss_pred             CCC-eEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEE
Confidence            543 11111222234555543210                     12246677777778776431           1246


Q ss_pred             EEEec-cCcCCHHHHHHHHHH
Q psy6548         210 IRLSP-ALNITEQELREGLDI  229 (242)
Q Consensus       210 lR~~~-~~~~t~e~i~~~~~~  229 (242)
                      +|+++ +...|+++++.+++.
T Consensus       498 lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       498 FRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             EEEEecCCCCCHHHHHHHHHH
Confidence            99985 555678888887764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.85  E-value=6.2e-07  Score=74.77  Aligned_cols=215  Identities=13%  Similarity=0.130  Sum_probs=134.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE--eccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~--De~~~~~~~~g~~~~~~~~~   80 (242)
                      +...+++|+++ +...++++++++++.++..| .+..   .++++.+.++++|+++++  |=.-.++  .-.++     .
T Consensus       192 i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~~G-~~~~---d~~~l~~~~h~~~al~~v~aDplaL~L--L~pPG-----e  260 (450)
T COG0403         192 IEVVDADDLDDLESADDGDVFGVLVQYPNTFG-IVEE---DLRALIEAAHSAGALVIVAADPLALGL--LKPPG-----E  260 (450)
T ss_pred             EEEeccchhhhhhhccccCeEEEEEecCCCCC-ccch---hHHHHHHHHhhcCCEEEEEechhHhhc--cCCcc-----c
Confidence            55677888888 55566799999999987544 2343   399999999999998874  3222111  11111     2


Q ss_pred             CCCCEEE-----eecccc-CCccchheeEeChhhhhccCCCCCC----------------------------CCCCCCHH
Q psy6548          81 VRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPGTHG----------------------------STYGGNPL  126 (242)
Q Consensus        81 ~~~~~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~  126 (242)
                      +..|+++     |+=.++ || ..+|++.++++....+--...+                            ++.+.+..
T Consensus       261 ~GADIvvG~~QrfGvPmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQa  339 (450)
T COG0403         261 FGADIVVGSAQRFGVPMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQA  339 (450)
T ss_pred             cCCceEEecCcccCCCcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHH
Confidence            3568887     444455 66 6789999988876655432111                            22222322


Q ss_pred             --HHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCcee
Q psy6548         127 --ACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT  202 (242)
Q Consensus       127 --~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  202 (242)
                        +.+++..+.-...+  .++..++.++..++.++| +..+.+..  +....+|.-+.+.-+......+.++....|+-+
T Consensus       340 LlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L-~~~~~g~~--~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L  416 (450)
T COG0403         340 LLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGL-KEIGAGVE--LVFDHFFDTFTVRVPEEVAEALLAAAIAGGINL  416 (450)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-hhcCCceE--eccccceeeEEEecchhHHHHHHHHHHhcCCce
Confidence              22222222111111  245677778888888888 65442211  111144444444433135667778888889999


Q ss_pred             ccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         203 KPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       203 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +..+...+=+++.-..|+++++.+++.+...
T Consensus       417 ~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         417 RRVDADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             eeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence            8887778888888888999999999988764

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.83  E-value=4.9e-07  Score=77.27  Aligned_cols=209  Identities=15%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-----cCcccc----c----ccCCCCCCEEE
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-----TGKLLA----I----HYEDVRPDIVI   87 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-----~g~~~~----~----~~~~~~~~~~~   87 (242)
                      +++.++++...|..|+.+.+.+.++++.++|++||+.+|.|.++. +++     ..+...    .    ...--..|..+
T Consensus       170 ~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~  248 (450)
T TIGR02618       170 KIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMSYADGCT  248 (450)
T ss_pred             ccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhccCcEEE
Confidence            566778888777765577777889999999999999999999985 211     000000    0    00001245544


Q ss_pred             ee--ccccCCccchh-eeE-eChhhhhccCCCC--CCC--CCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          88 LG--KALSGGLYPIS-AVL-ADDEVMGTLVPGT--HGS--TYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ~s--K~~~~g~~~~g-~~~-~~~~~~~~l~~~~--~~~--~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +|  |-++   .++| ++. .+++++++++...  ..+  ++++ ....+.+..-+++...++.+.++.....++|.+.|
T Consensus       249 ~S~~Kd~~---~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L  325 (450)
T TIGR02618       249 MSGKKDCL---VNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKL  325 (450)
T ss_pred             EeeccCCC---CCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            44  4444   3333 344 4678888776541  111  1111 11122222223444444456666667788999999


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHHC-Cceecc-------C----------CCCEEEEe
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKDA-GLVTKP-------I----------SNNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~-gi~~~~-------~----------~~~~lR~~  213 (242)
                       ++.+  +....+..|+.++++...       .+.-++.++-.|... ||=...       .          .-..+|++
T Consensus       326 -~~~G--vpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rla  402 (450)
T TIGR02618       326 -KAAG--VPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLT  402 (450)
T ss_pred             -HHCC--CcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeec
Confidence             6664  222335566778776443       224566777777643 432211       1          12579997


Q ss_pred             c-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         214 P-ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       214 ~-~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      . .-.-|.++++...+++..+.++
T Consensus       403 iprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       403 IPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             cccccccHhHHHHHHHHHHHHHhh
Confidence            4 4556899999999999887765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PLN02263 serine decarboxylase

Probab=98.80  E-value=1.3e-06  Score=75.38  Aligned_cols=195  Identities=14%  Similarity=0.010  Sum_probs=118.3

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCC-----EEEEeccccccCc-cCcccccccCC--CCCCEEE--eecc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-----LFIADEVQTGLGR-TGKLLAIHYED--VRPDIVI--LGKA   91 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~De~~~~~~~-~g~~~~~~~~~--~~~~~~~--~sK~   91 (242)
                      +.+|+..-...+.|.+=|    +++|.++|++||+     ++.+|.++.|+.- ..+.  .+.+.  ...|-++  .-|.
T Consensus       229 P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~--~~~~df~~~vDSIsvD~HK~  302 (470)
T PLN02263        229 PAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR--APKVTFKKPIGSVSVSGHKF  302 (470)
T ss_pred             cEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc--ccccCCCcCccEEEECCccc
Confidence            455555544455564443    9999999999997     9999999987421 1110  01111  1245444  4599


Q ss_pred             ccCCccchheeEeChhhhhccCCC-----CCCCCCC--CCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhh
Q psy6548          92 LSGGLYPISAVLADDEVMGTLVPG-----THGSTYG--GNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELRSR  161 (242)
Q Consensus        92 ~~~g~~~~g~~~~~~~~~~~l~~~-----~~~~~~~--~~~~~~~~a~a~l~~~~~~~~---~~~~~~~~~~l~~~l~~~  161 (242)
                      ++.+ +++|.++..+.....+...     ..-.+..  .+.......+.+++.+-.+++   .++..++++++.+.| ++
T Consensus       303 l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l-~~  380 (470)
T PLN02263        303 VGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRL-RE  380 (470)
T ss_pred             cCCC-cCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            9988 8999988886554333221     0111222  222334556777776554444   455556778888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+  .....++.+..+.|.-+.+         .+..+|..+... ++.++++.....+.+.++++++.|++..+.
T Consensus       381 ~g--~~~~~~p~s~~V~f~~p~~---------~~~~~gW~L~~~-~~~~Hivvmphv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        381 AG--ISAMLNELSSTVVFERPKD---------EEFVRRWQLACQ-GNIAHVVVMPSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             CC--CeEEeCCCceEEEEecCch---------HHhhcceEEccC-CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence            54  2222234445555543332         123578887765 456888876667889999999999887764

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.79  E-value=9e-07  Score=75.30  Aligned_cols=195  Identities=15%  Similarity=0.175  Sum_probs=101.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE-eecccc---
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI-LGKALS---   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~---   93 (242)
                      ++++++|++..++..|  ++-+   ++++.++++++|+++++ .+. ..++-.-.+   .  .+..|+++ .+|.||   
T Consensus       195 ~~~~a~v~vq~Pn~~G--~~ed---~~~i~~~~h~~gal~~~-~ad~~aL~~l~~P---g--e~GADI~vg~~Q~fg~p~  263 (429)
T PF02347_consen  195 DDDTAAVMVQNPNTFG--VFED---IKEIADIAHAAGALVIV-GADPNALGGLKSP---G--EYGADIVVGEHQTFGIPM  263 (429)
T ss_dssp             STTEEEEEEESS-TTS--B--T---HHHHHHHHHHTT-EEEE-CGGCCGCCTC--G---G--GGT-SEEEECCTTTT---
T ss_pred             ccCeEEEEeecCCCCc--eEee---HHHHHHHHHHcCCEEEE-ecCHHHHhCcCCh---h--hcCccEEeeCCCCCcccC
Confidence            6789999999987654  3432   99999999999999987 433 111111111   1  23568887 557776   


Q ss_pred             --CCccchheeEeChhhhhccCCC----------------------------CCCCCCCCCHHHHHH-HHHHHHHHHh--
Q psy6548          94 --GGLYPISAVLADDEVMGTLVPG----------------------------THGSTYGGNPLACKL-AMTALDVILE--  140 (242)
Q Consensus        94 --~g~~~~g~~~~~~~~~~~l~~~----------------------------~~~~~~~~~~~~~~~-a~a~l~~~~~--  140 (242)
                        || -.+|++.++++++.++-..                            ...++++.+...++. +..-+..+-.  
T Consensus       264 ~~GG-P~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~G  342 (429)
T PF02347_consen  264 GFGG-PGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEG  342 (429)
T ss_dssp             CCC--S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHH
Confidence              56 6688999998877766432                            111223334333221 1112222323  


Q ss_pred             -ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEE-EecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcC
Q psy6548         141 -ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI-VLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  218 (242)
Q Consensus       141 -~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~  218 (242)
                       .++-+....++.++++.| +.... ...  ....++-.+ ....+ ....++.+++...|+.......+.+-+++.-..
T Consensus       343 L~~iA~~~~~~A~yl~~~L-~~~~~-~~~--~~~~f~e~v~~~~~~-~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~  417 (429)
T PF02347_consen  343 LREIAERIHLNAHYLAERL-KKIYG-LPF--DNPFFFEFVVVFSKD-KEVEELLKRGIEGGLNLRYPDDGALLICVTETR  417 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-CCTTB-ECS--SSSSBSSEEEEESS--HHHHHHHHTT----EEEGGG-SSEEEEE--TT-
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhcC-ccc--CCCCceeeeeecCCc-HHHHHHHHHHHhcCCCccccCCCeEEEEccCCC
Confidence             345677788999999999 65421 111  111122222 22232 344456677777787666556679999999999


Q ss_pred             CHHHHHHHHHHH
Q psy6548         219 TEQELREGLDII  230 (242)
Q Consensus       219 t~e~i~~~~~~l  230 (242)
                      |+||||++++.|
T Consensus       418 t~edid~lv~~f  429 (429)
T PF02347_consen  418 TKEDIDRLVEAF  429 (429)
T ss_dssp             -HHHHHHHHH--
T ss_pred             CHHHHHHHHhcC
Confidence            999999999864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG3846|consensus

Probab=98.79  E-value=1e-06  Score=70.56  Aligned_cols=207  Identities=14%  Similarity=0.182  Sum_probs=132.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-ee-ccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-LG-KALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-~s-K~~~~g~   96 (242)
                      .++++.|++.++|--+|+...    +.+|-..-+..|+++=.|=+|+ +|+..  .-...|  ..|+.+ .| |.+.+|-
T Consensus       212 gDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp--L~LHdW--gVDFACWCSYKYlnaGa  282 (465)
T KOG3846|consen  212 GDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP--LQLHDW--GVDFACWCSYKYLNAGA  282 (465)
T ss_pred             CCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc--eEEeec--CCceEEEeeecccccCC
Confidence            468999999999999998765    7777766667789999998886 43332  222334  457766 33 7665220


Q ss_pred             cchheeEeC-hhhhhccC-----------------------CCCCCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHH
Q psy6548          97 YPISAVLAD-DEVMGTLV-----------------------PGTHGSTYGGNPL-ACKLAMTALDVILE---ENMIENAY  148 (242)
Q Consensus        97 ~~~g~~~~~-~~~~~~l~-----------------------~~~~~~~~~~~~~-~~~~a~a~l~~~~~---~~~~~~~~  148 (242)
                      =++|..... +..-+...                       ++..+...+.+|+ ..++.+.+|++..+   .+++.+.-
T Consensus       283 GgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~  362 (465)
T KOG3846|consen  283 GGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSL  362 (465)
T ss_pred             CccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhh
Confidence            123333332 22221111                       1123333344444 33444556777655   33444444


Q ss_pred             HHHHHHHHHHHhhc-CCC-------------CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6548         149 KMGEIFRSELRSRL-SPD-------------IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP  214 (242)
Q Consensus       149 ~~~~~l~~~l~~~l-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~  214 (242)
                      -+..++...+ +.. +..             .++.....|....+.+..+   ...+.+.|.++|+++-...++.||++|
T Consensus       363 lLTgYleyL~-k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp---~~~vfqeL~krGv~~DkR~PNvIRvAP  438 (465)
T KOG3846|consen  363 LLTGYLEYLL-KASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP---TPKVFQELHKRGVIGDKRRPNVIRVAP  438 (465)
T ss_pred             hHHhHHHHHH-HHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC---chHHHHHHHHcCeeccccCCCceEeec
Confidence            5667777777 433 211             1223344566677777665   578999999999999888899999997


Q ss_pred             -cCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         215 -ALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       215 -~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                       +++++-.|+.++++.|.+++..+.
T Consensus       439 vpLYN~f~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  439 VPLYNTFSDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhh
Confidence             899999999999999999988754

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.74  E-value=5.1e-08  Score=72.87  Aligned_cols=81  Identities=26%  Similarity=0.498  Sum_probs=60.6

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--cccc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALS   93 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~   93 (242)
                      ...+.++++++++++++++|...+    +++++++|+++|+++|+|++|.++......  .......+|+++.|  |+|+
T Consensus        87 ~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~  160 (170)
T cd01494          87 LKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLG  160 (170)
T ss_pred             ccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccC
Confidence            344678999999999999997776    589999999999999999999765332211  11223457888866  9998


Q ss_pred             CCccchheeEe
Q psy6548          94 GGLYPISAVLA  104 (242)
Q Consensus        94 ~g~~~~g~~~~  104 (242)
                      +  .++|++.+
T Consensus       161 ~--~~~G~l~~  169 (170)
T cd01494         161 G--EGGGVVIV  169 (170)
T ss_pred             C--CceEEEEe
Confidence            6  56788764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.72  E-value=4e-06  Score=70.17  Aligned_cols=218  Identities=15%  Similarity=0.142  Sum_probs=135.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++ +...+++++++.+..++.- | +. . +-+.+|+++.+++|.++..|.+.. . +|... ++     .+..|++-
T Consensus       193 DlddLk~k~~~~~AalMiTnPsT~-G-vF-E-~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r-PG-----d~G~DV~H  262 (496)
T COG1003         193 DLDDLRAKAEDNLAALMITNPSTL-G-VF-E-EDIREICEIVHEAGGQVYYDGANLNAIVGLAR-PG-----DMGFDVVH  262 (496)
T ss_pred             cHHHHHHHhccceeEEEeccCccc-c-cc-h-hhHHHHHHHHHHcCCEEEecCcchhhhhcccc-cc-----ccccceEE
Confidence            5666 5555688999888876443 4 33 2 459999999999999999999873 2 22111 11     23446665


Q ss_pred             --eecccc-----CCccchheeEeChhhhhccCC----CC---------------CCCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548          88 --LGKALS-----GGLYPISAVLADDEVMGTLVP----GT---------------HGSTYGGNPLACKLAMTALDVILEE  141 (242)
Q Consensus        88 --~sK~~~-----~g~~~~g~~~~~~~~~~~l~~----~~---------------~~~~~~~~~~~~~~a~a~l~~~~~~  141 (242)
                        +-|+|+     || -+.|-+..++++..++-.    ..               ....+.+|......+++-+..+-.+
T Consensus       263 lNLHKTF~iPHGGGG-PG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~  341 (496)
T COG1003         263 LNLHKTFCIPHGGGG-PGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGAD  341 (496)
T ss_pred             eecccccccCCCCCC-CCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHH
Confidence              568776     45 667777777777765543    10               0112233444444455555544444


Q ss_pred             cHH---HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEec----CCchhHHHHHHHHHHCCceeccC-----CCCE
Q psy6548         142 NMI---ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD----KSILEVYDVCIKMKDAGLVTKPI-----SNNI  209 (242)
Q Consensus       142 ~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~gi~~~~~-----~~~~  209 (242)
                      ++.   +..--+++++..+|+....- ..........-+.++..    +.+..+.+++++|++.|+..-..     -.+.
T Consensus       342 GL~~ase~AvLNANYia~rL~~~y~~-~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~t  420 (496)
T COG1003         342 GLKQASEVAVLNANYIARRLKGYYPV-PYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGT  420 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHhhhcCcc-ccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccc
Confidence            432   33345788898888322221 11111112333444443    11267889999999999876321     3678


Q ss_pred             EEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         210 IRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       210 lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +.+=|+-.-+++++|++++++.++.++..+.
T Consensus       421 LMIEPTEsEsk~eLDrf~dami~I~~Ea~~~  451 (496)
T COG1003         421 LMIEPTESESKEELDRFIDAMIAIREEADAV  451 (496)
T ss_pred             eeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            8998888899999999999999988876554

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.62  E-value=4.7e-06  Score=77.32  Aligned_cols=194  Identities=9%  Similarity=0.079  Sum_probs=118.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-eecccc-----C
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-LGKALS-----G   94 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~-----~   94 (242)
                      +++++++..++. .|.+-    .+++|.++++++|++++++--...++-.-.+   .  .+..|+++ .+|.||     |
T Consensus       194 ~~~~v~~q~Pn~-~G~ie----d~~~i~~~~h~~gal~~~~ad~~al~ll~~P---g--e~GaDi~vg~~q~fg~p~g~G  263 (939)
T TIGR00461       194 DVFGCLLQYPAT-DGSIL----DYKQLIDALHSHKSLVSVAADLMALTLLTPP---G--HYGADIVLGSSQRFGVPMGYG  263 (939)
T ss_pred             CEEEEEEECCCC-CeEEe----cHHHHHHHHHHcCCEEEEEechHHhCCcCCH---H--HcCCcEEeeCCCccCCCCCCC
Confidence            577776665544 45444    3999999999999999986433222111111   1  23568877 446555     4


Q ss_pred             CccchheeEeChhhhhccCCCCCCC----------------------------CCCCCHHHHHHHHHH--HHHHHhc---
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGS----------------------------TYGGNPLACKLAMTA--LDVILEE---  141 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~----------------------------~~~~~~~~~~~a~a~--l~~~~~~---  141 (242)
                      | ...|++.+++++...+.....+.                            +...+...+ +..++  +.++-.+   
T Consensus       264 G-P~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~-a~~a~~Y~~~~G~~GL~  341 (939)
T TIGR00461       264 G-PHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLL-ANVASSYCVYHGPKGLK  341 (939)
T ss_pred             C-CceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHH-HHHHHHHHHHHCHHHHH
Confidence            5 55888888888776665321110                            001111111 11222  2233233   


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      ++.+++..++.++.+.| +..+-.....    .++-.+.+.-+..+++++.+.+.++||.++....+.++++++-.+|.+
T Consensus       342 ~iA~~~~~~a~~l~~~L-~~~G~~~~~~----~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~  416 (939)
T TIGR00461       342 NIARRIHSLTSILANGL-ENDPHELINK----TWFDTLTVKVGNGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKA  416 (939)
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCcccCC----CccceEEEEeCCCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHH
Confidence            34566777888889999 6655322221    223233322111357889999999999998776789999999999999


Q ss_pred             HHHHHHHHHH
Q psy6548         222 ELREGLDIII  231 (242)
Q Consensus       222 ~i~~~~~~l~  231 (242)
                      ||+.+++.+.
T Consensus       417 di~~l~~~~~  426 (939)
T TIGR00461       417 DVENLLKVFD  426 (939)
T ss_pred             HHHHHHHHhc
Confidence            9999999994

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.55  E-value=7.1e-07  Score=73.55  Aligned_cols=199  Identities=15%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccccccC-CCCCCEEE---eecccc-C
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAIHYE-DVRPDIVI---LGKALS-G   94 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~-~~~~~~~~---~sK~~~-~   94 (242)
                      ...++-..-||||| +-++.+-+++|.++.++.+.+-++|=+|-||+....  ......+ ...+.+.+   +||.|| =
T Consensus       173 ~vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLY  251 (396)
T COG1448         173 SVVLLHGCCHNPTG-IDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLY  251 (396)
T ss_pred             CEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhh
Confidence            34455555799999 666788899999999999999999999998853322  1111111 22344444   889999 4


Q ss_pred             CccchheeE---eChhhhhccCCC---CCCCCCCCCHH-HHHHHHHHH-----H-HHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548          95 GLYPISAVL---ADDEVMGTLVPG---THGSTYGGNPL-ACKLAMTAL-----D-VILE--ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        95 g~~~~g~~~---~~~~~~~~l~~~---~~~~~~~~~~~-~~~~a~a~l-----~-~~~~--~~~~~~~~~~~~~l~~~l~  159 (242)
                      | -|+|.+.   -+++...++...   ..-.+|+.+|- .+......|     + .++.  .++++++.++++.+.+.| 
T Consensus       252 g-ERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L-  329 (396)
T COG1448         252 G-ERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDAL-  329 (396)
T ss_pred             h-hccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4 6777643   234444433321   12234443331 111111111     1 1111  356788888999999999 


Q ss_pred             hhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         160 SRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       160 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +....  .+..-....|++...   .  ...+++-+...+.||++...|    |+++... ++..++.+.+.|.++
T Consensus       330 ~~~~~~~~f~~i~~Q~GMFsy~---G--ls~~QV~rLree~~IY~v~sG----Ri~vaGl-~~~ni~~va~ai~~v  395 (396)
T COG1448         330 KALGAPRNFDFIISQRGMFSYT---G--LSPEQVDRLREEFGIYLVASG----RINVAGL-NTSNIDYVAKAIAAV  395 (396)
T ss_pred             HhhCCCcccchHhhcCceeecC---C--CCHHHHHHHHHhccEEEecCC----eeeeccC-ChhhHHHHHHHHHhh
Confidence            55432  222222334443332   2  234554444446799887754    7776544 778999999888765

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.45  E-value=2.1e-06  Score=70.00  Aligned_cols=193  Identities=17%  Similarity=0.160  Sum_probs=107.3

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eecccc-CCc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS-GGL   96 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~-~g~   96 (242)
                      ...-+=+|.+++||.|.+--         .+.+.-+..+|.|-+|  ++++-.+...   ..+.|+..  +||.-| +| 
T Consensus       136 ~~~~IElVTSPNNPDG~lr~---------~V~~g~~~k~I~D~AY--YWPhyTpI~~---~aD~DiMLFT~SK~TGHAG-  200 (363)
T PF04864_consen  136 PSPYIELVTSPNNPDGQLRE---------AVLNGSSGKVIHDLAY--YWPHYTPITA---PADHDIMLFTLSKLTGHAG-  200 (363)
T ss_dssp             CCGEEEEEESS-TTT---------------SSTTTEEEEEEE-TT---STTTS---S----B--SEEEEEHHHHCS-GG-
T ss_pred             CCCeEEEEeCCCCCcccccc---------hhcCCCCcceeeeeee--ecccccccCC---CCCCceEEEEEecccCccc-
Confidence            35666778888898885431         2334556678999877  3444333221   12446555  789999 88 


Q ss_pred             cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----c----cH----HHHHHHHHHHHHHHHHhhcC
Q psy6548          97 YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----E----NM----IENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        97 ~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~----~~----~~~~~~~~~~l~~~l~~~l~  163 (242)
                      .|+||.+.+ +++.+.+.......|.+.+-=++.-++..|+.+.+    +    ++    .+.++++-.+|++.+ ..-.
T Consensus       201 SR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~-~~S~  279 (363)
T PF04864_consen  201 SRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAV-SASK  279 (363)
T ss_dssp             G-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHH-CCSS
T ss_pred             cccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHH-HhcC
Confidence            999999887 55666666544445556565555555555554422    1    23    234444445555555 2211


Q ss_pred             C-----------C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHH
Q psy6548         164 P-----------D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       164 ~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~  226 (242)
                      .           . ......+...+.|+....+ . -++-...|++.||+.+.+     +..++|++  ...++++.+.+
T Consensus       280 rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-e-d~DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l  355 (363)
T PF04864_consen  280 RFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-E-DEDCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQL  355 (363)
T ss_dssp             SEEE---SCEEETTTTCEEE---SEEEEEESSC-G-GSSHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHH
T ss_pred             ceecCcCCchhccccccccCCCCCeEEEecCCc-c-cccHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHH
Confidence            0           1 1112233467888888765 2 233445667889888765     67899999  88899999999


Q ss_pred             HHHHHH
Q psy6548         227 LDIIIN  232 (242)
Q Consensus       227 ~~~l~~  232 (242)
                      +++|.+
T Consensus       356 ~~rL~~  361 (363)
T PF04864_consen  356 LERLSK  361 (363)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            999864

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK15029 arginine decarboxylase; Provisional

Probab=98.45  E-value=3e-05  Score=70.88  Aligned_cols=189  Identities=14%  Similarity=0.078  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhhCCEEEEeccccc-cCccCccccc-ccC-----C-CCCC-EEE--eeccccCCccchheeEeChh--hh-
Q psy6548          44 LKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAI-HYE-----D-VRPD-IVI--LGKALSGGLYPISAVLADDE--VM-  109 (242)
Q Consensus        44 l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~-~~~-----~-~~~~-~~~--~sK~~~~g~~~~g~~~~~~~--~~-  109 (242)
                      +++|+++|++++++|++||+|.. |+.+. .+.. ...     . ..+| +++  .-|.+++- -..+++-.+..  .+ 
T Consensus       330 i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id  407 (755)
T PRK15029        330 AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAIN  407 (755)
T ss_pred             HHHHHHHHHhcCCeEEEECccccccccCc-cccccccccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccC
Confidence            99999999999999999999955 33332 1210 111     1 3467 666  44988742 23344333211  11 


Q ss_pred             -hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC----------------C--
Q psy6548         110 -GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPD----------------I--  166 (242)
Q Consensus       110 -~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~----------------~--  166 (242)
                       +++... ...+|-|.+.+.++..-.+.+.++.   +++.+...+....+|+.+ +.+...                +  
T Consensus       408 ~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l-~~~~~~~~~~~~~~~~~~~~~~v~~  486 (755)
T PRK15029        408 FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM-ARLYKEFTADGSWFFKPWNKEVVTD  486 (755)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HhccccccccccccccccCcccccc
Confidence             122211 1222334444455444444455543   234566667777777777 444310                0  


Q ss_pred             ----------------------CCeE-e-----e-----------eceeEEEEecCCchh---------HHHHHHHHHHC
Q psy6548         167 ----------------------VPVV-R-----G-----------KGLLNAIVLDKSILE---------VYDVCIKMKDA  198 (242)
Q Consensus       167 ----------------------~~~~-~-----~-----------~~~~~~~~~~~~~~~---------~~~~~~~l~~~  198 (242)
                                            .+.. +     +           .-.-+.+..+..+..         +.++.+.|.++
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~  566 (755)
T PRK15029        487 PQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH  566 (755)
T ss_pred             ccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHc
Confidence                                  0000 0     0           001112222221122         33788999889


Q ss_pred             CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       199 gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ||.+--.+...+=+.++...|+++++++++.|.+..+
T Consensus       567 gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        567 GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             CCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            9999888888888888889999999999999987744

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.37  E-value=2.8e-06  Score=70.92  Aligned_cols=119  Identities=15%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             hcCCCCCEEEEE--EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--c
Q psy6548          15 KLKSNPNICAFM--VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--K   90 (242)
Q Consensus        15 ~~~~~~~~~~i~--~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K   90 (242)
                      +.+.+.++++++  ..+.+..+|...     +++++++|++||+++++|.+-....+ ..+...+.....+|+++||  |
T Consensus       150 ~~AIne~ta~llkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdK  223 (395)
T COG1921         150 ELAINENTALLLKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDK  223 (395)
T ss_pred             HHHhccCCeeEEEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecch
Confidence            444444444432  333334555433     78899999999999999986532211 1111222234578999988  8


Q ss_pred             cccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548          91 ALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE  141 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~  141 (242)
                      -|+|+  +.|.++|++++++.+++......+-.....+++..++|+.+..+
T Consensus       224 llgGP--qaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         224 LLGGP--QAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQP  272 (395)
T ss_pred             hcCCC--ccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence            88874  68999999999999987545555556677788888888887764

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.32  E-value=6.8e-05  Score=64.05  Aligned_cols=210  Identities=12%  Similarity=0.105  Sum_probs=120.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----c------CccCcccc--cccCCCCCCEEE
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----L------GRTGKLLA--IHYEDVRPDIVI   87 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~------~~~g~~~~--~~~~~~~~~~~~   87 (242)
                      +++..+.+.-.+|..|+.+.+.+.++++.++|++||+.++.|.+-..    |      +..+....  ....--..|.++
T Consensus       182 ~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt  261 (467)
T TIGR02617       182 NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLA  261 (467)
T ss_pred             CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEE
Confidence            45667777767777788888999999999999999999999987621    1      11111110  000001245444


Q ss_pred             --eeccccCCccchh-eeEeChh----hhhccCCC----CCCCCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          88 --LGKALSGGLYPIS-AVLADDE----VMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        88 --~sK~~~~g~~~~g-~~~~~~~----~~~~l~~~----~~~~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                        +||.+++.   +| ++.++++    +.+..+..    .-..|+++ +.--+.+....|+...++++..+--.-.++|.
T Consensus       262 ~slsKglgAp---vGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~  338 (467)
T TIGR02617       262 MSAKKDAMVP---MGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLV  338 (467)
T ss_pred             EEcCCCCCCc---ccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHH
Confidence              77999943   34 4556543    34444332    11223432 22222222223444434555555556667788


Q ss_pred             HHHHhhcCCCCCCeEeeeceeEEEE-------ecCCchhHHHHHHHHHHC-Cceec----------cC-------CCCEE
Q psy6548         156 SELRSRLSPDIVPVVRGKGLLNAIV-------LDKSILEVYDVCIKMKDA-GLVTK----------PI-------SNNII  210 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~-gi~~~----------~~-------~~~~l  210 (242)
                      +.| .+.+  ++... ..|+-+.++       ++..+.-+..++-.|..+ ||=..          |.       .-..+
T Consensus       339 ~~L-~~~G--vpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~  414 (467)
T TIGR02617       339 NGL-EEIG--VVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELL  414 (467)
T ss_pred             HHH-HhCC--CcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCcccee
Confidence            888 5544  33333 445555553       233324566777777643 43321          10       12579


Q ss_pred             EEec-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         211 RLSP-ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       211 R~~~-~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      |++. .-.-|.+++|...+++..+.++
T Consensus       415 RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       415 RLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             eeccccccccHhHHHHHHHHHHHHHhh
Confidence            9974 4556999999999999887765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.26  E-value=4.1e-05  Score=65.30  Aligned_cols=188  Identities=18%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCC-------EEEee--cccc
Q psy6548          24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD-------IVILG--KALS   93 (242)
Q Consensus        24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~-------~~~~s--K~~~   93 (242)
                      ++++.|.+  .|....    +++|+++|++++.+|++||+|.. ++.. . +.........|       +++-|  |.++
T Consensus       172 vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~-lp~~a~~~gad~~~~~~~~vvqS~HKtL~  243 (417)
T PF01276_consen  172 VVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-P-LPRSALALGADRPNDPGIIVVQSTHKTLP  243 (417)
T ss_dssp             EEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-G-GGTTCSSTTSS-CTSBEEEEEEEHHHHSS
T ss_pred             EEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-C-CccchhhccCccccccceeeeechhhccc
Confidence            45555533  353443    99999999999999999999955 4333 2 22233455666       77754  9888


Q ss_pred             CCccchheeEeChhh---hhccCCC-CCCCCCCCCHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHhhcCCC-
Q psy6548          94 GGLYPISAVLADDEV---MGTLVPG-THGSTYGGNPLACKLAMTALDVI-LE--ENMIENAYKMGEIFRSELRSRLSPD-  165 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~---~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~-~~--~~~~~~~~~~~~~l~~~l~~~l~~~-  165 (242)
                      +- -..+++-.+...   .++++.. ..-+|-+.+.+.++..-.+.+.+ ..  +.+.++..++...+|+.| +.+... 
T Consensus       244 al-tQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i-~~~~~~~  321 (417)
T PF01276_consen  244 AL-TQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKI-NRLNDIW  321 (417)
T ss_dssp             S--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-HHHCCT-
T ss_pred             cc-ccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            53 445555444321   1222221 12233355555655555555666 22  346677777888888888 433320 


Q ss_pred             --CCC---eEeeec-------------------------eeEEEEec---------CCchhHHHHHHHHHHCCceeccCC
Q psy6548         166 --IVP---VVRGKG-------------------------LLNAIVLD---------KSILEVYDVCIKMKDAGLVTKPIS  206 (242)
Q Consensus       166 --~~~---~~~~~~-------------------------~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~~~  206 (242)
                        .+.   .....+                         .-+.+..+         +.+..+..+.++|.++||.+--.+
T Consensus       322 ~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d  401 (417)
T PF01276_consen  322 GFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTD  401 (417)
T ss_dssp             SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEE
T ss_pred             eEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEecc
Confidence              001   011110                         11223331         222567788999999999998777


Q ss_pred             CCEEEEeccCcCCHH
Q psy6548         207 NNIIRLSPALNITEQ  221 (242)
Q Consensus       207 ~~~lR~~~~~~~t~e  221 (242)
                      ...+=+-.+...|++
T Consensus       402 ~~~vL~l~t~G~t~~  416 (417)
T PF01276_consen  402 LYNVLFLFTIGDTKE  416 (417)
T ss_dssp             SSEEEEE--TTS-HH
T ss_pred             CccEEEEecCCCCCC
Confidence            777777666665553

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>KOG0258|consensus

Probab=98.24  E-value=2e-05  Score=65.16  Aligned_cols=206  Identities=16%  Similarity=0.174  Sum_probs=111.0

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccC-ccccc----ccCC-CCC---CEEE-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTG-KLLAI----HYED-VRP---DIVI-   87 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g-~~~~~----~~~~-~~~---~~~~-   87 (242)
                      .=+++++++-++.|++|+ +.+++-+++|..+|.+++++++.||+|-+ ++..+ +..++    .+.+ ..+   ..++ 
T Consensus       213 ~i~~r~lvvINPGNPTGq-vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~Sf  291 (475)
T KOG0258|consen  213 GINPRALVVINPGNPTGQ-VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASF  291 (475)
T ss_pred             cCCceEEEEECCCCccch-hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEee
Confidence            335666666666677885 55788999999999999999999999965 33333 22222    1122 122   2333 


Q ss_pred             --eecccc--CCccchheeEe---ChhhhhccCCC---CCCCCC--------CCCHHHHHHHHHHHHHH--HhccHHHHH
Q psy6548          88 --LGKALS--GGLYPISAVLA---DDEVMGTLVPG---THGSTY--------GGNPLACKLAMTALDVI--LEENMIENA  147 (242)
Q Consensus        88 --~sK~~~--~g~~~~g~~~~---~~~~~~~l~~~---~~~~~~--------~~~~~~~~~a~a~l~~~--~~~~~~~~~  147 (242)
                        .||++.  .| .|.||+-.   +++..+.+.+.   ....+-        -.+|+--  +-...+..  +.+.+...+
T Consensus       292 hSvSKGy~gECG-~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~P--gd~Sy~~~~~Ekd~il~~l  368 (475)
T KOG0258|consen  292 HSVSKGYMGECG-QRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKP--GDPSYDLFSSEKDGILSSL  368 (475)
T ss_pred             ecccccceeeec-ccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCC--CCcchhhhhhhhHhHHHHH
Confidence              678877  68 78898753   34444444321   000000        0011000  01111111  234567778


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeEE---EEecCCc--------hhHHH-HHHHHHH-CCceeccC-------CC
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNA---IVLDKSI--------LEVYD-VCIKMKD-AGLVTKPI-------SN  207 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~-~~~~l~~-~gi~~~~~-------~~  207 (242)
                      ++.++.+.+.+ +.+....+.  +..|.|..   +.+|..-        ...+. .+..|++ -||.+.|+       |.
T Consensus       369 ~~ra~l~~~~~-ns~~gi~cn--~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~Gt  445 (475)
T KOG0258|consen  369 RSRAKLTEDAF-NSLEGISCN--PVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGT  445 (475)
T ss_pred             HHHhHHHHHHH-hhcCceeec--cCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCce
Confidence            88888888888 777642222  33344444   3333321        11122 2444554 59999987       34


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++|.+.   ...+ + +.++++.+.-++
T Consensus       446 yH~R~Ti---Lp~~-~-~~i~~~~~fH~~  469 (475)
T KOG0258|consen  446 YHFRTTI---LPPG-L-EIIEKFKKFHAE  469 (475)
T ss_pred             eEEEEee---cCch-h-HHHHHHHHHHHH
Confidence            5788872   2222 3 555666555444

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.23  E-value=2.4e-05  Score=67.93  Aligned_cols=170  Identities=12%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             EEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-cCcccccc-cCCC-CCCEEE--eeccccCCccch
Q psy6548          25 FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLAIH-YEDV-RPDIVI--LGKALSGGLYPI   99 (242)
Q Consensus        25 i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~g~~~~~~-~~~~-~~~~~~--~sK~~~~g~~~~   99 (242)
                      |+..-...++|.+=|    +++|.++|++|++++.+|.++.|+.. .... ... .+++ ..|-++  +-|.+..+ +++
T Consensus       211 vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~-~~~~~f~l~~vdSIt~d~HK~g~aP-~~~  284 (460)
T COG0076         211 VVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEP-DGRWDFGLEGVDSITVDGHKYGLAP-IGC  284 (460)
T ss_pred             EEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCc-cchhhcCCCCceEEEECcccccCCC-CCc
Confidence            444444444564333    99999999999999999999987522 1111 101 1222 335444  55988887 899


Q ss_pred             heeEeChh--hhhccCC--CCCC----CCC----CCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcCC
Q psy6548         100 SAVLADDE--VMGTLVP--GTHG----STY----GGNPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus       100 g~~~~~~~--~~~~l~~--~~~~----~~~----~~~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      |+++..++  +.+.+.-  ....    .++    +.+.....++++.++.+-.++   +.++..++++++.+.| +..+.
T Consensus       285 G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l-~~~~~  363 (460)
T COG0076         285 GVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEEL-EKLGD  363 (460)
T ss_pred             eEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            99987644  3333321  1111    111    122224445566666664444   4455558889999999 66542


Q ss_pred             CCCCeEeeeceeEEEEecCCchh-HHHHHHHHHHCCceec
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILE-VYDVCIKMKDAGLVTK  203 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~  203 (242)
                       +....++..+.+.+..++. .+ ..+....+.+.|..+.
T Consensus       364 -~e~~~~p~l~~V~fr~~~~-~~~~~~~~~~~~~~gw~v~  401 (460)
T COG0076         364 -FELVNEPELPIVAFRLKDD-EDTLADLSERLDRRGWQVP  401 (460)
T ss_pred             -cEeecCCccceEEEEcCCc-ccchhchHHHHHhcCceee
Confidence             1222233567778887553 23 4455566666776664

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.19  E-value=2.6e-06  Score=70.50  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=53.8

Q ss_pred             hhh-hcCCCCCEEEEEEcc--cccCCC-cccCCHHHHHHHHHHHHhhCCEEEEeccccc------cCccCcccccccCCC
Q psy6548          12 VPA-KLKSNPNICAFMVEP--IQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTG------LGRTGKLLAIHYEDV   81 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~--~~~~~G-~~~~~~~~l~~l~~l~~~~~~~li~De~~~~------~~~~g~~~~~~~~~~   81 (242)
                      +++ +...+++|++++--.  .+...| .-.++   ++++++++++|++++|+|-.-..      ++..+++-..+....
T Consensus       126 ~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~  202 (367)
T PF03841_consen  126 LSDYEKAITENTAALLKVHTSNFRIQGFTGEVS---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAA  202 (367)
T ss_dssp             --------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCC
T ss_pred             ccccccccccccccccccccccccccccccccc---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhc
Confidence            444 455567887765443  332222 11222   89999999999999999965411      111222323334455


Q ss_pred             CCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy6548          82 RPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL  139 (242)
Q Consensus        82 ~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~  139 (242)
                      ..|+++||  |-+||+  ..|.++++++++++++.....-.+..+-..+++..++++...
T Consensus       203 GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~  260 (367)
T PF03841_consen  203 GADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYL  260 (367)
T ss_dssp             T-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHH
Confidence            78999998  888875  489999999999998753233344455667777777777554

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.12  E-value=4.6e-05  Score=63.74  Aligned_cols=206  Identities=10%  Similarity=0.058  Sum_probs=103.4

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--cc--ccccCCC-CCCEEEeeccccCC
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LL--AIHYEDV-RPDIVILGKALSGG   95 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~--~~~~~~~-~~~~~~~sK~~~~g   95 (242)
                      +..++++..+....| +.|  +.+++|+++|++||++.++..+|. +...-.  ..  +.. .|. +.++-...|-|--|
T Consensus       154 ~~iLcvltttscfap-r~~--D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~-~GRvda~vqS~dkNF~VP  228 (389)
T PF05889_consen  154 DNILCVLTTTSCFAP-RLP--DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWR-VGRVDAFVQSTDKNFMVP  228 (389)
T ss_dssp             GGEEEEEEESSTTTT-B------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHH-HSTCSEEEEEHHHHHCEE
T ss_pred             CCeEEEEEecCccCC-CCC--ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHh-cCCcceeeeecCCCEEec
Confidence            445555555555555 343  349999999999999999999985 310000  00  111 122 22223355766632


Q ss_pred             ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC---CCCCe
Q psy6548          96 LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP---DIVPV  169 (242)
Q Consensus        96 ~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~  169 (242)
                       .+-+.+.++ +..+..+.....+-.+..+  ..-.-...+.+..+  ..+.....+...+++++| +.+..   .....
T Consensus       229 -vGgai~As~~~~~i~~vs~~YpGRas~sp--~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl-~~~aee~~e~ll~  304 (389)
T PF05889_consen  229 -VGGAIMASFDPSGILAVSKEYPGRASASP--SLDLFITLLSLGCTGYGALLKERKASFPYLKERL-KKWAEEVGERLLE  304 (389)
T ss_dssp             -SSHEEEEESSHHHHHHHHHTSHSHBTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTEEBSS
T ss_pred             -CCCcEEEecCHHHHHHHHHHhhhhhhccc--chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcC
Confidence             223334443 4555555542222222211  12121222222222  234455555666666666 44321   11122


Q ss_pred             EeeeceeEEEEecCCc----hhHHHHHHHHHHCCceecc----C-----------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKP----I-----------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~----~-----------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      .+.......+.++.-.    .+...+...|+.+||.-..    .           ...++-++..+..+.||+|.++++|
T Consensus       305 ~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL  384 (389)
T PF05889_consen  305 TPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRL  384 (389)
T ss_dssp             STT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHH
T ss_pred             CCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            2233344455555321    3467899999999765432    1           1268888888999999999999999


Q ss_pred             HHHHH
Q psy6548         231 INTIN  235 (242)
Q Consensus       231 ~~~l~  235 (242)
                      +++++
T Consensus       385 ~k~i~  389 (389)
T PF05889_consen  385 DKIIK  389 (389)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1383|consensus

Probab=98.10  E-value=0.00073  Score=57.38  Aligned_cols=214  Identities=15%  Similarity=0.149  Sum_probs=120.6

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCcc-CcccccccCCCC-CCEEEee--
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRT-GKLLAIHYEDVR-PDIVILG--   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~-g~~~~~~~~~~~-~~~~~~s--   89 (242)
                      ....+.+|.+++.+-.+.+.|.+=    .+++|.++.-+ +++++.+|.+-.||-.. +. .....|++. |-+.+.|  
T Consensus       212 ~~~i~eNti~lv~~~~~~p~G~~e----~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~-~~~~~fdFr~p~V~Sisa~  286 (491)
T KOG1383|consen  212 VRMIDENTIMLVGSLPNFPTGEIE----DVEKLADLLLEIWDIPIHVDACLGGFINPAGY-LNEEEFDFRVPGVTSISAD  286 (491)
T ss_pred             HHHhccceEEEEEEcCCCCccchh----hHHHHHHHHHHHhCCceeecccCccccccccc-cCccccccCCCCceeEeec
Confidence            445677899999999888888443    48999999988 99999999998877432 22 112234432 2222222  


Q ss_pred             --c-ccc-CCccchheeEeC-hh-hhhccCCC--CCC-----CCC--CCCHHHHHHHHHHHHHHHhccH---HHHHHHHH
Q psy6548          90 --K-ALS-GGLYPISAVLAD-DE-VMGTLVPG--THG-----STY--GGNPLACKLAMTALDVILEENM---IENAYKMG  151 (242)
Q Consensus        90 --K-~~~-~g~~~~g~~~~~-~~-~~~~l~~~--~~~-----~~~--~~~~~~~~~a~a~l~~~~~~~~---~~~~~~~~  151 (242)
                        | +|. .|   ++|++-. ++ +..++.-.  ..|     .|.  +-+....+++++++=-+-.+++   -+++.+..
T Consensus       287 ~HKYGl~~~G---~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~  363 (491)
T KOG1383|consen  287 GHKYGLAPAG---SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETA  363 (491)
T ss_pred             cceeeeeecC---cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              3 333 34   5676532 22 22222210  011     111  2222334445555332323333   45666788


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHH-HHHHHH
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQE-LREGLD  228 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~-i~~~~~  228 (242)
                      ..+++.+ +....-.+. ..   +.+.+...+.. .+.-++.+.|.+.|..+..- .+..+-+++...+..++ .++++.
T Consensus       364 ~~l~egi-e~i~~i~i~-gk---p~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~  438 (491)
T KOG1383|consen  364 RKLREGI-ENIKGIKIV-GK---PLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVA  438 (491)
T ss_pred             HHHHHhh-hccccceec-CC---CcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHH
Confidence            8888888 554431111 11   22333333321 45667899999999888531 23355555544444444 688999


Q ss_pred             HHHHHHHHHhhhc
Q psy6548         229 IIINTINTMAAKK  241 (242)
Q Consensus       229 ~l~~~l~~~~~~~  241 (242)
                      -|++++.++...+
T Consensus       439 Di~~~~~el~~~p  451 (491)
T KOG1383|consen  439 DIRKVVEELKSLP  451 (491)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999988876543

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.05  E-value=0.0013  Score=54.34  Aligned_cols=196  Identities=17%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEee--ccccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVILG--KALSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~s--K~~~~g~~   97 (242)
                      +.+.|..++....+|-.++...+.      ...  .++++|-+-. +      ++ ...++ ..|++.+|  |-+|+  -
T Consensus       144 ~~ayv~~~~NeTi~Gv~v~~~p~~------~~~--~~~v~D~SS~-i------ls-r~iDvsk~dviyagaQKnlGp--a  205 (365)
T COG1932         144 NDAYVHFCWNETISGVEVPELPDI------GSD--GLLVADASSA-I------LS-RPIDVSKYDVIYAGAQKNLGP--A  205 (365)
T ss_pred             CccEEEEecCCcccceEccCCCCC------CCC--ceEEEecccH-H------hc-CCCChhHcceEEEehhhccCc--c
Confidence            355577777767677666542211      111  6788885432 1      11 11122 34677777  99993  2


Q ss_pred             chheeEeChhhhhccCCC------------CCCCCCCCCH-HHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHh
Q psy6548          98 PISAVLADDEVMGTLVPG------------THGSTYGGNP-LACKLAMTALDVILE----ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~------------~~~~~~~~~~-~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +++.++.++++.+++.+.            ..++++.++| ++......+++.++.    +.+.++.+++.+.|-+.+ .
T Consensus       206 GltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~i-d  284 (365)
T COG1932         206 GLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWI-D  284 (365)
T ss_pred             ceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-H
Confidence            367888999999988663            1234444443 344444556777765    346677777888888888 3


Q ss_pred             hcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         161 RLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       161 ~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .-+-  ........+-.-+.|.+.++ .....|...+.++|++.-.+  ..+.+|++.-...+.|+++.+++-++...+.
T Consensus       285 ~s~fy~~~v~~~~RS~mnV~f~~~~~-~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         285 KSDFYRNLVAKANRSRMNVTFTLVDA-ELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             hCCccccccchhhccceeEEEEcCcH-HHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence            3231  11222122223455666665 56678889998988777543  2445999988888999999999988876554

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.99  E-value=0.00053  Score=62.34  Aligned_cols=198  Identities=11%  Similarity=0.050  Sum_probs=109.2

Q ss_pred             EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc-CccCcc---cccccCCCC-CC--EEE--eecccc
Q psy6548          23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL-GRTGKL---LAIHYEDVR-PD--IVI--LGKALS   93 (242)
Q Consensus        23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~-~~~g~~---~~~~~~~~~-~~--~~~--~sK~~~   93 (242)
                      .+++..|.+  .| ++.+   +++|.++|+.++  |++||+|.+. ..+...   .++. .+-. .+  +++  .-|.++
T Consensus       300 ~~vit~pTY--dG-~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~  370 (714)
T PRK15400        300 HAVITNSTY--DG-LLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLA  370 (714)
T ss_pred             EEEEECCCC--cc-EecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhccc
Confidence            366666633  36 4443   888999998887  6899999653 222211   1111 1111 13  555  448777


Q ss_pred             CCccchheeEeC-----hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          94 GGLYPISAVLAD-----DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        94 ~g~~~~g~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      +- ...+++-.+     +++.+.+.   .-.|-|.+.+.++..-.+...++.   +.+.+...+....+|+.| ..+...
T Consensus       371 al-TQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l-~~~~~~  445 (714)
T PRK15400        371 AF-SQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEI-KRLRTE  445 (714)
T ss_pred             ch-hHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhCCCc
Confidence            42 223332111     11212111   112223333444444444444542   235666777777888888 554320


Q ss_pred             -----C-CCeEe-----------------e-----------eceeEEEEecC---------CchhHHHHHHHHHHCCcee
Q psy6548         166 -----I-VPVVR-----------------G-----------KGLLNAIVLDK---------SILEVYDVCIKMKDAGLVT  202 (242)
Q Consensus       166 -----~-~~~~~-----------------~-----------~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~~  202 (242)
                           + .+...                 +           .-.-+.+..+.         .+..+..+.+.|.++||.+
T Consensus       446 ~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~  525 (714)
T PRK15400        446 SDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVV  525 (714)
T ss_pred             ccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEE
Confidence                 0 00000                 0           00111222322         1134667889999999999


Q ss_pred             ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         203 KPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       203 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      --.+...+-+.++...|+++++++++.|.+.-
T Consensus       526 E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~  557 (714)
T PRK15400        526 EKTGPYNLLFLFSIGIDKTKALSLLRALTDFK  557 (714)
T ss_pred             EecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            98888899998889999999999999998753

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.97  E-value=0.00086  Score=61.07  Aligned_cols=48  Identities=10%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         188 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       188 ~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      +..+.+.|.++||.+--.+...+-+.++...|+++++++++.|.+.-+
T Consensus       517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~  564 (720)
T PRK13578        517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK  564 (720)
T ss_pred             HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            578899998999999888888888888889999999999999987644

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.95  E-value=0.0016  Score=60.83  Aligned_cols=196  Identities=11%  Similarity=0.094  Sum_probs=117.5

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE-eecccc--
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI-LGKALS--   93 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~--   93 (242)
                      .+++++++++..++.. |.+ .   .++++.++++++|+++|+- +. ..++-.-.+   .  ....|+++ -++.||  
T Consensus       205 ~~~~~~~v~vq~P~~~-G~i-~---d~~~i~~~~h~~gal~~~~-~d~laL~ll~~P---g--e~GADI~vG~~Q~fGvp  273 (954)
T PRK12566        205 AAHAVFGALLQYPDTH-GEI-R---DLRPLIDQLHGQQALACVA-ADLLSLLVLTPP---G--ELGADVVLGSTQRFGVP  273 (954)
T ss_pred             CCCCEEEEEEECCCCc-eEE-c---cHHHHHHHHHHcCCEEEEE-eCHHHHhCCCCh---h--hcCCcEEeeCCCcCCCC
Confidence            3457999998776654 434 2   3999999999999987632 21 101111111   1  23568887 335444  


Q ss_pred             ---CCccchheeEeChhhhhccCCCCCC----------------------------CCCCCCHHHHHHHHHHHHHH-Hhc
Q psy6548          94 ---GGLYPISAVLADDEVMGTLVPGTHG----------------------------STYGGNPLACKLAMTALDVI-LEE  141 (242)
Q Consensus        94 ---~g~~~~g~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~a~a~l~~~-~~~  141 (242)
                         || -.+|++.+++++...+-....+                            ++...+...++.+-+.+-.+ -.+
T Consensus       274 ~~~GG-P~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~  352 (954)
T PRK12566        274 MGYGG-PHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE  352 (954)
T ss_pred             CCCCC-CCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChH
Confidence               55 5688898888776666432222                            11122222222211112112 123


Q ss_pred             c---HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcC
Q psy6548         142 N---MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI  218 (242)
Q Consensus       142 ~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~  218 (242)
                      +   +-.++..++.++.+.| +..+-....    ..+|--|.+.-. ....++.+...++||-++..+.+.+.+++.-..
T Consensus       353 Gl~~ia~~~~~~a~~l~~~l-~~~g~~~~~----~~fF~~~~v~~~-~~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~  426 (954)
T PRK12566        353 GLKRIAQRVHRLTAILAAGL-EAKGIKRLN----RHFFDTLTLEVG-GAQAAIIESAEAARINLRILGRGRLGVSLDETC  426 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhcCCcccc----CCccceEEEEcc-CCHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCC
Confidence            3   3455667788888889 555422211    123333333322 246788889999999999887888999998899


Q ss_pred             CHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIII  231 (242)
Q Consensus       219 t~e~i~~~~~~l~  231 (242)
                      +.+|++.+++.+.
T Consensus       427 ~~~~~~~~~~~f~  439 (954)
T PRK12566        427 DEATVARLFDIFL  439 (954)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999999984

>KOG2467|consensus

Probab=97.83  E-value=0.0011  Score=54.73  Aligned_cols=181  Identities=18%  Similarity=0.204  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhhCCEEEEeccc-cccCccCc-ccccccCCCCCCEEE--eeccccCCccchheeEeChhhhh---------
Q psy6548          44 LKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMG---------  110 (242)
Q Consensus        44 l~~l~~l~~~~~~~li~De~~-~~~~~~g~-~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~---------  110 (242)
                      ..+++++|.+.|+++++|=+| +|+...+. +..+++    .|+++  .-|++-|+  |.|.+.-.+-+..         
T Consensus       206 YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRGP--Rg~mIFyRkGvk~~~~k~g~~i  279 (477)
T KOG2467|consen  206 YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRGP--RGAMIFYRKGVKSIKPKQGKEI  279 (477)
T ss_pred             HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccCC--cceeEEEeccCCcCCCCCCCcc
Confidence            788999999999999999999 77644442 222222    46666  45888864  5555543321111         


Q ss_pred             ------ccC----CCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548         111 ------TLV----PGTHGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN  177 (242)
Q Consensus       111 ------~l~----~~~~~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  177 (242)
                            .+.    |..+++.   +.-..++...+|+...++   ++.+++.++.+.+.+.| ...+..+.+.... ..++
T Consensus       280 ~ydlE~kINfaVFP~lQGGP---HNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l-~~~Gy~lvtgGTD-nHlv  354 (477)
T KOG2467|consen  280 LYDLEDKINFAVFPGLQGGP---HNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASAL-ISRGYKLVTGGTD-NHLV  354 (477)
T ss_pred             eechhhhhhhhccccccCCC---CcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-HHcCceEecCCcc-ceEE
Confidence                  110    1112221   122233323345554443   46677888999999999 7766544333222 3566


Q ss_pred             EEEecCCchhHHHHHHHHHHCCceec----cC-----CCCEEEEecc----CcCCHHHHHHHHHHHHHHHH
Q psy6548         178 AIVLDKSILEVYDVCIKMKDAGLVTK----PI-----SNNIIRLSPA----LNITEQELREGLDIIINTIN  235 (242)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lR~~~~----~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .+++...+.+....-+-|-.-+|.+.    |+     .++.+|+.-+    -...++|+++..+-|.++.+
T Consensus       355 LvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  355 LVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             EEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            67777654333333333333344332    22     4678999643    34567888888888877654

>KOG1412|consensus

Probab=97.81  E-value=0.00029  Score=56.89  Aligned_cols=192  Identities=16%  Similarity=0.165  Sum_probs=109.9

Q ss_pred             cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc----cccccC-CCCCCE-EE--eecccc-CCccchh
Q psy6548          30 IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL----LAIHYE-DVRPDI-VI--LGKALS-GGLYPIS  100 (242)
Q Consensus        30 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~----~~~~~~-~~~~~~-~~--~sK~~~-~g~~~~g  100 (242)
                      .+|++| +=|+.|-+++|++.-+..+.+-++|-+|-||. .|.+    |+..++ ....++ ++  |+|-|| -+ -|+|
T Consensus       187 AhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYn-eRvG  263 (410)
T KOG1412|consen  187 AHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYN-ERVG  263 (410)
T ss_pred             ccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcCCeEEEEhhhhhhccccc-cccc
Confidence            588998 67788889999999999999999999999883 4432    332221 111233 33  999988 44 5777


Q ss_pred             ee--Ee-ChhhhhccCC-C--CCCCCCCCCHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHHhhcC
Q psy6548         101 AV--LA-DDEVMGTLVP-G--THGSTYGGNPLACKLAMTALDVILEE-----------NMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus       101 ~~--~~-~~~~~~~l~~-~--~~~~~~~~~~~~~~~a~a~l~~~~~~-----------~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      -+  +. ++..+..+.. .  ....+++ ||++. +|+-+-+.+.++           .+..++++.+..|++.| ..|+
T Consensus       264 nltvv~~n~a~i~~v~SQl~lviR~~~S-NPPAy-GArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L-~aL~  340 (410)
T KOG1412|consen  264 NLTVVVNNPAVIAGVKSQLTLVIRSNWS-NPPAY-GARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHL-VALK  340 (410)
T ss_pred             ceEEEecChhHHHHHHHHHHHHHhhccC-CCcch-hhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence            43  23 3344333322 1  1123333 34443 334444555432           23456677888888888 6665


Q ss_pred             C-CC-CCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         164 P-DI-VPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       164 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      - +. ..-.+..|.+-..   .   .....+++|.+ +.|++.+.  +  |++.+.- +...+|...++|.++...+.
T Consensus       341 TPGtWDHI~~QiGMFSyT---G---Ltp~qV~~li~~h~vyLl~~--G--RInisGL-N~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  341 TPGTWDHITQQIGMFSYT---G---LTPAQVDHLIENHKVYLLSD--G--RINISGL-NMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             CCCcHHHHHhhccceeec---C---CCHHHHHHHHHhceEEEecC--C--cEeeecc-ccccHHHHHHHHHHHHHhhc
Confidence            2 21 1112333433222   2   23345667765 46666554  3  5544344 45578888888888776653

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.78  E-value=0.0047  Score=56.34  Aligned_cols=201  Identities=13%  Similarity=0.052  Sum_probs=108.8

Q ss_pred             EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEE-EEecccccc-CccCcc---cccccCCCCCCEE---E--eeccc
Q psy6548          23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF-IADEVQTGL-GRTGKL---LAIHYEDVRPDIV---I--LGKAL   92 (242)
Q Consensus        23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l-i~De~~~~~-~~~g~~---~~~~~~~~~~~~~---~--~sK~~   92 (242)
                      ++++..|.  -.| ++.+   +++|.++|   |+.+ ++||+|.+. ..+...   .++. .+-.+|.+   +  .-|.+
T Consensus       300 ~vvit~pT--YdG-i~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL  369 (713)
T PRK15399        300 HAVITNST--YDG-LLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKML  369 (713)
T ss_pred             EEEEECCC--CCc-eeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccc
Confidence            45555553  336 4444   77788887   5666 699999653 222211   1111 11135665   3  44877


Q ss_pred             cCCccchheeEeChhhh-hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCC---
Q psy6548          93 SGGLYPISAVLADDEVM-GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSP---  164 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~---  164 (242)
                      ++- ...+++-.+..+- +++... ..-.|-|.+.+.++..-.+...++.   +.+.+...+.+..+|+.+ ..+..   
T Consensus       370 ~al-TQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l-~~~~~~~~  447 (713)
T PRK15399        370 AAF-SQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEV-QRLREESD  447 (713)
T ss_pred             ccc-chheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-Hhcccccc
Confidence            752 3344443322111 111111 0112223333444443444444542   235666777777788877 44331   


Q ss_pred             CC---CCeE-----------------ee-----------eceeEEEEec---------CCchhHHHHHHHHHHCCceecc
Q psy6548         165 DI---VPVV-----------------RG-----------KGLLNAIVLD---------KSILEVYDVCIKMKDAGLVTKP  204 (242)
Q Consensus       165 ~~---~~~~-----------------~~-----------~~~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~  204 (242)
                      .+   .+..                 ++           .-.-+.+..+         ..+..+..+.+.|.++||.+--
T Consensus       448 ~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~  527 (713)
T PRK15399        448 GWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEK  527 (713)
T ss_pred             CceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEe
Confidence            00   0000                 00           0011122232         1124567889999999999998


Q ss_pred             CCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         205 ISNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       205 ~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .+...+-+.++...|+++++++++.|.+.-+
T Consensus       528 ~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        528 TGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             cCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            8888888888899999999999999987633

>KOG2040|consensus

Probab=97.68  E-value=0.0022  Score=56.85  Aligned_cols=206  Identities=17%  Similarity=0.164  Sum_probs=124.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc----ccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT----GLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~----~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      .++.+++.+.-+... | +.-  +-++++.++.++||-.+..|.+.+    |+.+.|.        +..|+.-  +-|.|
T Consensus       678 ~~~Laa~MvTYPST~-G-vfE--~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd--------~GaDV~HLNLHKTF  745 (1001)
T KOG2040|consen  678 KDNLAALMVTYPSTH-G-VFE--EGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGD--------IGADVCHLNLHKTF  745 (1001)
T ss_pred             hhhhheeEEeccccc-c-ccc--ccHHHHHHHHHhcCCEEEecCCCccceecccCCcc--------ccccceeeccccee
Confidence            567888877765443 3 322  349999999999999999998764    2322222        2234333  55766


Q ss_pred             c-----CCccchheeEeChhhhhccCCCCCC---------------CCCCCCHHHHHHHHHHHHHHHhccH---HHHHHH
Q psy6548          93 S-----GGLYPISAVLADDEVMGTLVPGTHG---------------STYGGNPLACKLAMTALDVILEENM---IENAYK  149 (242)
Q Consensus        93 ~-----~g~~~~g~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~~~a~a~l~~~~~~~~---~~~~~~  149 (242)
                      .     || .+.|-+..+++++.++......               ....++...+...++-++.+-..++   .+..--
T Consensus       746 cIPHGGGG-Pg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiL  824 (1001)
T KOG2040|consen  746 CIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAIL  824 (1001)
T ss_pred             eecCCCCC-CCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhh
Confidence            5     44 5566666677777666432111               1112333444456766776655443   233344


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCC----chhHHHHHHHHHHCCceecc---CCCCEEEEeccCcCCHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQ  221 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~---~~~~~lR~~~~~~~t~e  221 (242)
                      ++++..++| +..-..+.....+ .+.-+.+++.+-    +.++.+++++|.+.|...-.   .-.+.+.+-|.-.-+.+
T Consensus       825 NaNYMakRL-e~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~  903 (1001)
T KOG2040|consen  825 NANYMAKRL-ESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKA  903 (1001)
T ss_pred             hhHHHHHHH-hhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCceEeccCccccHH
Confidence            677888888 4432211111111 122333443332    16788999999999987632   24688999988888999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy6548         222 ELREGLDIIINTINTMA  238 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~  238 (242)
                      |+|++.+++-.+-+++.
T Consensus       904 ElDRfcdAliSIreEI~  920 (1001)
T KOG2040|consen  904 ELDRFCDALISIREEIA  920 (1001)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999877766654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.65  E-value=0.00076  Score=57.38  Aligned_cols=139  Identities=17%  Similarity=0.225  Sum_probs=74.9

Q ss_pred             CCCEEE-EEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccC
Q psy6548          19 NPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSG   94 (242)
Q Consensus        19 ~~~~~~-i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~   94 (242)
                      ++.+.+ |+..-.-..+|.+=|    +++|+++|++|++++.+|.++.|.............++ ..|-++  ..|.++.
T Consensus       191 ~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~  266 (373)
T PF00282_consen  191 NGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGV  266 (373)
T ss_dssp             TTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-
T ss_pred             ccccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcC
Confidence            445553 333334444564432    99999999999999999999987211111111111222 235555  5599998


Q ss_pred             CccchheeEeChh-hh-hcc--CCCCCC--------------CCCCCC-HHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Q psy6548          95 GLYPISAVLADDE-VM-GTL--VPGTHG--------------STYGGN-PLACKLAMTALDVILEEN---MIENAYKMGE  152 (242)
Q Consensus        95 g~~~~g~~~~~~~-~~-~~l--~~~~~~--------------~~~~~~-~~~~~~a~a~l~~~~~~~---~~~~~~~~~~  152 (242)
                      + +++|+++..++ .. ..+  .+.+..              .+...+ .......+.+++.+-.++   ..++..++++
T Consensus       267 P-~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~  345 (373)
T PF00282_consen  267 P-YGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELAR  345 (373)
T ss_dssp             S-SS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-ccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            8 89999887643 22 222  111011              111222 234444566666554443   4566667888


Q ss_pred             HHHHHHHhhcC
Q psy6548         153 IFRSELRSRLS  163 (242)
Q Consensus       153 ~l~~~l~~~l~  163 (242)
                      ++++.| ++.+
T Consensus       346 ~l~~~l-~~~~  355 (373)
T PF00282_consen  346 YLADRL-RKDP  355 (373)
T ss_dssp             HHHHHH-HTST
T ss_pred             HHHHHH-HhCC
Confidence            888888 5554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG0628|consensus

Probab=97.61  E-value=0.0056  Score=52.17  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             eEEEEecCCchhHHHHHHHHHHC-CceeccC---CCCEEEEeccC-cCCHHHHHHHHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSILEVYDVCIKMKDA-GLVTKPI---SNNIIRLSPAL-NITEQELREGLDIIINTINTM  237 (242)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~---~~~~lR~~~~~-~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++.|.+.+.....+++.+++... .|.+.|.   +.-.||++... ..+++++++..+.|.+....+
T Consensus       406 LvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  406 LVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             eeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence            45566666556778888888765 5566654   56679998654 446788999999999887764

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.51  E-value=0.00014  Score=59.57  Aligned_cols=88  Identities=15%  Similarity=0.090  Sum_probs=56.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVI--LGKALSGG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g   95 (242)
                      .++++|++|...+..|+.+++.+.+++|.++|++||+.++.|.+-..  ....+..  ....--..|.++  ++|.++..
T Consensus       123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~--~~e~~~~~D~v~~~~tK~~g~~  200 (290)
T PF01212_consen  123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVS--LAEIAAGADSVSFGGTKNGGAP  200 (290)
T ss_dssp             GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHH--HHHHHTTSSEEEEETTSTT-SS
T ss_pred             CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccccc--HHHHhhhCCEEEEEEEcccccc
Confidence            57999999999999888899999999999999999999999987521  1111111  111112457776  45877732


Q ss_pred             ccchheeEeChhhhhc
Q psy6548          96 LYPISAVLADDEVMGT  111 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~  111 (242)
                        ..+.++++++.++.
T Consensus       201 --~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  201 --GGAVLAGNKEFIAK  214 (290)
T ss_dssp             --SEEEEEESHHHHHH
T ss_pred             --cceEEEechHHHHH
Confidence              13456688875443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>KOG0629|consensus

Probab=97.42  E-value=0.0024  Score=53.82  Aligned_cols=205  Identities=15%  Similarity=0.133  Sum_probs=107.6

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-c--CccCcccccccCCC-CCCEEE--eeccccCC
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L--GRTGKLLAIHYEDV-RPDIVI--LGKALSGG   95 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~--~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g   95 (242)
                      +..+.+..--...|+.=|    |+.++++|++|+.++.+|.+..| +  .+..+   ....|+ ..+-++  -.|.+|++
T Consensus       254 Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGGglLmS~k~R---~kl~Giera~SvtwnpHK~~gap  326 (510)
T KOG0629|consen  254 PFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGGGLLMSRKHR---HKLTGIERANSVTWNPHKLMGAP  326 (510)
T ss_pred             CeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeecccccccccChhhH---hhccCccccCceeecHHHhhcCc
Confidence            455554443333454433    99999999999999999999865 2  11111   122344 345555  34999988


Q ss_pred             ccchheeEeChh-hhhccCCCCCCCCC-----------CCCHHHHHH-HHHHHHHH---Hh------ccHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDE-VMGTLVPGTHGSTY-----------GGNPLACKL-AMTALDVI---LE------ENMIENAYKMGEI  153 (242)
Q Consensus        96 ~~~~g~~~~~~~-~~~~l~~~~~~~~~-----------~~~~~~~~~-a~a~l~~~---~~------~~~~~~~~~~~~~  153 (242)
                       +.++.++...+ +.++-.+....+-|           +++-..+.+ -...++++   +.      +..+++.-+++++
T Consensus       327 -lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~y  405 (510)
T KOG0629|consen  327 -LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEY  405 (510)
T ss_pred             -chhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence             88888776643 34333332222211           111111211 00112211   11      2345667778999


Q ss_pred             HHHHHHhhcCC-CCCCe--EeeeceeEEEEecC-----Cc--------hhHHHHHHHHHHCCcee---ccC--CCCEEEE
Q psy6548         154 FRSELRSRLSP-DIVPV--VRGKGLLNAIVLDK-----SI--------LEVYDVCIKMKDAGLVT---KPI--SNNIIRL  212 (242)
Q Consensus       154 l~~~l~~~l~~-~~~~~--~~~~~~~~~~~~~~-----~~--------~~~~~~~~~l~~~gi~~---~~~--~~~~lR~  212 (242)
                      +.+.| ++-+. .....  ++-.-..+|...+.     ..        ..+-.+..+++++|..-   .|.  .++++|.
T Consensus       406 l~~~l-rer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~  484 (510)
T KOG0629|consen  406 LYDRL-REREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRM  484 (510)
T ss_pred             HHHHH-HhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhhe
Confidence            99999 44432 22222  11111112211111     00        11234566777776443   232  3678888


Q ss_pred             ec-cCcCCHHHHHHHHHHHHHHHH
Q psy6548         213 SP-ALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       213 ~~-~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .. +.+.+.+|++.+++.|++.-+
T Consensus       485 v~sn~a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  485 VISNPALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             ecccchhhhhhHHHHHHHHHHhcc
Confidence            53 335688999999999887644

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.36  E-value=0.024  Score=47.11  Aligned_cols=210  Identities=13%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c---cCccCcccccccCCC---------CCCE
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LGRTGKLLAIHYEDV---------RPDI   85 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~---~~~~g~~~~~~~~~~---------~~~~   85 (242)
                      .+++..|++.-.+|..|+-+-+-+-+++++++|++|++.++.|.+.. .   |..-.+.. .+.|-+         -.|-
T Consensus       183 ~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g-Yrd~sI~~IarEm~sYaD~  261 (471)
T COG3033         183 ADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG-YRDWSIEEIAREMYSYADG  261 (471)
T ss_pred             cccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc-cccccHHHHHHHHHhhhhh
Confidence            35677777777666666678888899999999999999999998762 1   11111110 011111         1234


Q ss_pred             EEee-c--cccCCccchh-eeEeChh----hhhccCCC---CCC-CCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy6548          86 VILG-K--ALSGGLYPIS-AVLADDE----VMGTLVPG---THG-STYGG-NPLACKLAMTALDVILEENMIENAYKMGE  152 (242)
Q Consensus        86 ~~~s-K--~~~~g~~~~g-~~~~~~~----~~~~l~~~---~~~-~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~  152 (242)
                      .++| |  ++.    ++| ++....+    +.+.++..   ..+ .|+++ ..-.+.+....|....+.++.++.-.-.+
T Consensus       262 ~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~  337 (471)
T COG3033         262 CTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQ  337 (471)
T ss_pred             heeecccccee----ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4444 4  333    222 2334433    44444332   111 12221 12222222223443334556666666677


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHH-CCceecc-----------------CCC
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKD-AGLVTKP-----------------ISN  207 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~-~gi~~~~-----------------~~~  207 (242)
                      +|.+.| ...+  ++...+..|.-+.++...       +..-++.++-.|.. .||=...                 +.-
T Consensus       338 YL~~~l-~~~G--Vpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~  414 (471)
T COG3033         338 YLADGL-EEAG--VPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPA  414 (471)
T ss_pred             HHHHHH-HhcC--CeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCch
Confidence            888888 5544  334445566666665322       22445666666654 3554421                 122


Q ss_pred             CEEEEec-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSP-ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..+|+.. ...-|.+++|..++.++++.+.
T Consensus       415 elvRltipRrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         415 ELVRLTIPRRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             heeeEeccccccchhHHHHHHHHHHHHHhc
Confidence            5799974 4556889999999998877654

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.30  E-value=0.0071  Score=50.34  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~   94 (242)
                      +.+++++++.-.-+-+--...+-+.++++.++.|+.  ++++++|.+|.+|...-++.     .+..|++.-|  |-.||
T Consensus       152 ~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~-----~vGADl~aGSLIKNpGG  226 (403)
T PF06838_consen  152 KPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT-----EVGADLMAGSLIKNPGG  226 (403)
T ss_dssp             HTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG-----GGT-SEEEEETTSGGGT
T ss_pred             ccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc-----ccchhheeccceeCCCC
Confidence            478999998765443333456667788888888774  77999999998775444432     3467888755  99998


Q ss_pred             Cccc-hheeEeChhhhhccCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          95 GLYP-ISAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        95 g~~~-~g~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      |+-+ .||+++++++.+.....        ..+.++..+.. +.-+     +...+..+...-+-+......+ +.++..
T Consensus       227 giAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~-~~QG-----lFlAP~vV~eAlKgaif~A~~f-e~lG~~  299 (403)
T PF06838_consen  227 GIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRL-MFQG-----LFLAPHVVGEALKGAIFAAALF-EKLGFE  299 (403)
T ss_dssp             TT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHTT-E
T ss_pred             CccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHH-HHhH-----HhhchHHHHHHHHHHHHHHHHH-HHcCCc
Confidence            7655 45899999998876531        23334432211 1111     1112333333333344444445 556531


Q ss_pred             C--CCeEeeeceeEEEEecCCchhHHHHHHHHHHC
Q psy6548         166 I--VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA  198 (242)
Q Consensus       166 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  198 (242)
                      +  .+..+..-.+..+.+... +....|++...+.
T Consensus       300 v~P~~~~~R~DiIQai~l~~~-e~l~~FC~~iQ~~  333 (403)
T PF06838_consen  300 VSPKPDDPRSDIIQAIELGSP-EKLIAFCQGIQAA  333 (403)
T ss_dssp             EES-TTS--SSS-EEEE-SSH-HHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCceEEEEECCCH-HHHHHHHHHHHhc
Confidence            1  112234456778888887 6777888887665

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=96.80  E-value=0.097  Score=46.37  Aligned_cols=197  Identities=15%  Similarity=0.092  Sum_probs=94.8

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--ccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~~   98 (242)
                      ..+++..|.+  .| +...   ++++.++++.+++++.+||+|- -++..+.... ...+...++++-|  |.+++. ..
T Consensus       168 k~~vitnpTY--dG-v~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~-~~~~~~~~~~tqS~HK~l~al-SQ  239 (557)
T COG1982         168 KLAVITNPTY--DG-VCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE-SALNGGADFVTQSTHKLLAAL-SQ  239 (557)
T ss_pred             eeEEEecCcc--ce-Eeec---HHHHHHHHhhcCceEEhhhcCcccccccccCcc-hhhhcCceEEEechhhhhhhh-hh
Confidence            3455555543  25 3433   8899999999999999999983 2333332211 1112344666644  777754 34


Q ss_pred             hheeEeC-------hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c--cH----HHHHHHHHHHHHHHHHhhcCC
Q psy6548          99 ISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-E--NM----IENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        99 ~g~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~--~~----~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      .+++-..       +++.+.+.-  +.+| +.+...++ .+.+.+.+.. .  .+    ....-+.++.+++.. +..+.
T Consensus       240 aS~iHv~~~~~~~~~r~nea~~~--h~ST-SPsY~l~A-SlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~-~~~~~  314 (557)
T COG1982         240 ASMIHVKDGRAVNHERFNEALMM--HQST-SPSYPLMA-SLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLI-NEIGF  314 (557)
T ss_pred             hHHHhhCCCccCCHHHHHHHHHH--HccC-CchHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            4444333       222222221  2222 22222332 2322332222 1  12    233344455555544 44331


Q ss_pred             CCCCeEe----ee----------------ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccC--cCCHHH
Q psy6548         165 DIVPVVR----GK----------------GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL--NITEQE  222 (242)
Q Consensus       165 ~~~~~~~----~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~--~~t~e~  222 (242)
                      --.....    ..                -.-+.+..+..+..+-.+.+.|.++|++...++...+-+.++.  .....+
T Consensus       315 ~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~l  394 (557)
T COG1982         315 FPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTL  394 (557)
T ss_pred             eeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHH
Confidence            0000000    00                1112344445446788899999999999988765554443222  233344


Q ss_pred             HHHHHHHHH
Q psy6548         223 LREGLDIII  231 (242)
Q Consensus       223 i~~~~~~l~  231 (242)
                      ++.+++.++
T Consensus       395 v~~L~~f~r  403 (557)
T COG1982         395 VDRLLEFKR  403 (557)
T ss_pred             HHHHHHHHH
Confidence            444444443

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=96.31  E-value=0.72  Score=41.92  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHH---HhhCC--EEEEeccccccCcc---Cc-----ccc-----------c-
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALC---SQYNV--LFIADEVQTGLGRT---GK-----LLA-----------I-   76 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~---~~~~~--~li~De~~~~~~~~---g~-----~~~-----------~-   76 (242)
                      +.+|+..-.-...|.+=|    +++|+++|   ++||+  ++.+|.+|.|+...   ..     ++.           + 
T Consensus       279 ~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~  354 (608)
T TIGR03811       279 ILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT  354 (608)
T ss_pred             eEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence            334444433444464433    88888888   77898  69999999875310   00     000           0 


Q ss_pred             ------------ccCCC-CCCEEE--eeccccCCccchheeEeCh-hhhhccCC---CC--CC---------CCCCCCH-
Q psy6548          77 ------------HYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMGTLVP---GT--HG---------STYGGNP-  125 (242)
Q Consensus        77 ------------~~~~~-~~~~~~--~sK~~~~g~~~~g~~~~~~-~~~~~l~~---~~--~~---------~~~~~~~-  125 (242)
                                  ...++ ..|-++  +-|.+..+ +++|.++..+ ++.+.+..   ..  .+         ++..++. 
T Consensus       355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~  433 (608)
T TIGR03811       355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKA  433 (608)
T ss_pred             cccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCc
Confidence                        00022 244444  66998877 7889877664 33332221   10  00         1112222 


Q ss_pred             -HHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHhhc
Q psy6548         126 -LACKLAMTALDVI--LE---ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus       126 -~~~~~a~a~l~~~--~~---~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                       ...++.+.+++.+  ..   ..+..+..+.++++.+.| +..
T Consensus       434 ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L-~~~  475 (608)
T TIGR03811       434 GATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFL-NNL  475 (608)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence             3355566777776  22   345667777888888888 553

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG2040|consensus

Probab=94.39  E-value=2  Score=39.00  Aligned_cols=196  Identities=14%  Similarity=0.172  Sum_probs=109.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-----eecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-----LGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-----~sK~~~   93 (242)
                      .+.++.+++.-+... |.+.+    +.++++.+++.+.++++---...+.-.   ....+  ...|+++     |+=.+|
T Consensus       245 ~~~v~gvlvQYP~t~-G~i~d----~~el~~~a~~~~s~vv~atDLLaLtiL---rpPge--fGaDIavGSsQRFGVPlG  314 (1001)
T KOG2040|consen  245 SKDVSGVLVQYPDTE-GSVLD----FDELVELAHANGSLVVMATDLLALTIL---RPPGE--FGADIAVGSSQRFGVPLG  314 (1001)
T ss_pred             ccceeEEEEEcCCCC-CcccC----HHHHHHHhhccCceEEEeehhhHHHcc---CChhh--cCceeeeccccccCcccc
Confidence            346888888766554 44554    888999999999887643111111001   11112  3457777     333444


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCC-----------------------CCCHH----HHHHHHHH-HHHHHh----
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTY-----------------------GGNPL----ACKLAMTA-LDVILE----  140 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~-----------------------~~~~~----~~~~a~a~-l~~~~~----  140 (242)
                       || .-.|++..++.+...+.....+-+-                       ..+.+    ++.|..++ +-..+-    
T Consensus       315 YGG-PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL  393 (1001)
T KOG2040|consen  315 YGG-PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGL  393 (1001)
T ss_pred             CCC-chHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHH
Confidence             55 5677776666554433322111111                       00111    11111111 111221    


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548         141 ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       141 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      +++.+++......|.+.| +..+.    +.....+|-.+.+.-. -.++++.++..+++|-++-...+.+-+++--..++
T Consensus       394 ~~IArrvh~~T~~l~~~l-~~agh----el~~k~fFDTLkI~~~-~s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~  467 (1001)
T KOG2040|consen  394 KEIARRVHNLTLILAEGL-KNAGH----ELQHKPFFDTLKIRCG-CSAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTE  467 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHH-hhcch----hhccccccceEEEEec-CcHHHHHHHHHhhcCceEEeecCceEEeecccccH
Confidence            234556666677777777 54442    1122224444444333 25788888888999999887788888888788899


Q ss_pred             HHHHHHHHHHH
Q psy6548         221 QELREGLDIII  231 (242)
Q Consensus       221 e~i~~~~~~l~  231 (242)
                      +|++.++..+.
T Consensus       468 ~DvddLl~vf~  478 (1001)
T KOG2040|consen  468 KDVDDLLWVFN  478 (1001)
T ss_pred             HHHHHHHHHHc
Confidence            99999998885

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=94.18  E-value=2.1  Score=35.10  Aligned_cols=177  Identities=12%  Similarity=0.093  Sum_probs=92.9

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEE--eec
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGK   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK   90 (242)
                      ....+++|++|.+.-.-+-.---..+-+.+++++++.++-  ++++.+|.+|..|...-++     ..+..|++.  +-|
T Consensus       159 ~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP-----t~vGaDliAGSLIK  233 (416)
T COG4100         159 KTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP-----THVGADLIAGSLIK  233 (416)
T ss_pred             HHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc-----cccchhhhccceee
Confidence            3344678999988664332221233445688888888774  6788899999776433332     234456655  558


Q ss_pred             cccCCccc-hheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhhcCCC-C
Q psy6548          91 ALSGGLYP-ISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALD-VILEENMIENAYKMGEIFRSELRSRLSPD-I  166 (242)
Q Consensus        91 ~~~~g~~~-~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~  166 (242)
                      --|||+.. .||+.+++++.+...-.... +.-.-...++...+..++ +...+......-+-.......| ..++-. .
T Consensus       234 NpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat~~~l~~myqGlFlAPhvv~qa~Kga~fta~~l-e~lg~~~~  312 (416)
T COG4100         234 NPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGATLYSLREMYQGLFLAPHVVSQAVKGAHFTARFL-EKLGFPVN  312 (416)
T ss_pred             CCCCceeeccceeechHHHHHhhceeeecCCccccccccHHHHHHHHhhhccchHHHHHHhhhhHHHHHHH-HHcCCCCC
Confidence            88877433 45788999888765422110 000000011111121111 1112333444444444444555 555531 1


Q ss_pred             -CCeEeeeceeEEEEecCCchhHHHHHHHHHHC
Q psy6548         167 -VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA  198 (242)
Q Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  198 (242)
                       .+..+..-.+..+.+.+. ...-+|++.+...
T Consensus       313 P~~~~kRtDlIQavkf~~~-eKmIaFcqaiQ~a  344 (416)
T COG4100         313 PKYDAKRTDLIQAVKFGSK-EKMIAFCQAIQAA  344 (416)
T ss_pred             CcccccccchhhheecCCH-HHHHHHHHHHhhc
Confidence             122233445667777776 5666777777544

>KOG1411|consensus

Probab=93.85  E-value=0.042  Score=45.42  Aligned_cols=188  Identities=18%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc----cccccC-CCCCCEEE---eecccc-CCccchh
Q psy6548          30 IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL----LAIHYE-DVRPDIVI---LGKALS-GGLYPIS  100 (242)
Q Consensus        30 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~----~~~~~~-~~~~~~~~---~sK~~~-~g~~~~g  100 (242)
                      .+|++| +=|+.+-+++|.++-++.+.+-++|-+|.||. .|..    .+...+ ....++.+   ++|-+| =| -|+|
T Consensus       207 aHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYg-ERvG  283 (427)
T KOG1411|consen  207 AHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYG-ERVG  283 (427)
T ss_pred             hcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccc-cCCchhhHHHHHHHHHcCCceEeehhhhhhcchhh-hccc
Confidence            688888 88899999999999999999999999998883 3332    111111 11234443   889988 33 5677


Q ss_pred             ee--Ee-ChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548         101 AV--LA-DDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-----------ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus       101 ~~--~~-~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~-----------~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      .+  ++ +.+...++..-   ....-++.+|+  .+|.-+-..+.+           ....+++...++.+.+.| +..+
T Consensus       284 a~svvc~~ad~A~rV~SQlk~liRpmYSnPP~--hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L-~~~g  360 (427)
T KOG1411|consen  284 ALSVVCKDADEAKRVESQLKILIRPMYSNPPL--HGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDAL-EKEG  360 (427)
T ss_pred             eeEEEecCHHHHHHHHHHHHHHhcccccCCCc--cchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHh-hcCC
Confidence            54  23 34444444321   01111222221  111111122211           224566667777777777 4333


Q ss_pred             CCCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         164 PDIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       164 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ....+  -....|.|...   .  ...+++-..-.+..|+.+..  +  |+++... +...++.+.+.|.++
T Consensus       361 s~~~W~hI~~QIGMF~fT---g--l~peQv~~l~ke~~iYmT~d--G--RiS~aG~-ss~nV~yLa~aih~v  422 (427)
T KOG1411|consen  361 SPGNWSHITKQIGMFCFT---G--LNPEQVDWLTKEYHIYLTKD--G--RISMAGL-SSSNVPYLADAIHAV  422 (427)
T ss_pred             CCccHHHHHHhhheeeec---C--CCHHHHHHHHhhheeeeccC--c--eEeeccc-cccCCcccchhhHhH
Confidence            21111  11222333322   1  23344433344556666543  2  6665444 444556665555443

>KOG3843|consensus

Probab=93.81  E-value=0.067  Score=42.69  Aligned_cols=190  Identities=12%  Similarity=0.101  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhhCCEEEEeccccccCccCc--ccc-cccCCC-CCCEEEeeccccCCccchheeE-eChhhhhccCCCC
Q psy6548          42 GYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLA-IHYEDV-RPDIVILGKALSGGLYPISAVL-ADDEVMGTLVPGT  116 (242)
Q Consensus        42 ~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~-~~~~~~-~~~~~~~sK~~~~g~~~~g~~~-~~~~~~~~l~~~~  116 (242)
                      +-+++|+.+|..|+++-|+..+|. +.....  ... ....|. +.-+-++-|-|.-+ .+.+.+. .+...++.+.+.+
T Consensus       174 d~leaiaaica~~diphivnnayg-lqsee~i~~iaa~~~~grida~vqsldknf~vp-vggaiia~fk~n~iq~iak~y  251 (432)
T KOG3843|consen  174 DNLEAIAAICAAHDIPHIVNNAYG-LQSEECIHKIAAAAECGRIDAFVQSLDKNFMVP-VGGAIIAAFKDNFIQEIAKMY  251 (432)
T ss_pred             chHHHHHHHHHccCchhhhccccc-cchHHHHHHHHHHhhhccHHHHHHHhhhcceee-cchhHhhHhHHHHHHHHHHhC
Confidence            569999999999999999999883 211111  111 111222 12233367887722 1111222 3455665555433


Q ss_pred             CCCCCCCCHHHHH-----HHHHH-HHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe--eec-eeEEEEecCCc-
Q psy6548         117 HGSTYGGNPLACK-----LAMTA-LDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVR--GKG-LLNAIVLDKSI-  185 (242)
Q Consensus       117 ~~~~~~~~~~~~~-----~a~a~-l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~-~~~~~~~~~~~-  185 (242)
                      -+-..+.+.+-..     .+..+ .+.+.+ .+...++++....+.+.+    +. +..+.+  ..+ .+..-.+++.. 
T Consensus       252 pgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~----~e-~l~~~p~n~is~amtl~ti~~~k~  326 (432)
T KOG3843|consen  252 PGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAI----GE-CLLETPENEISLAMTLKTIDEAKD  326 (432)
T ss_pred             CCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-hhhcCCCchhhhhhhhccCChHHh
Confidence            3322222221111     11111 222211 222222222222222222    21 111111  111 12222222221 


Q ss_pred             hhHHHHHHHHHHCCceec---cC----------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         186 LEVYDVCIKMKDAGLVTK---PI----------------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       186 ~~~~~~~~~l~~~gi~~~---~~----------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .-...|...|+.+||--.   |.                      ...++.......++..|+|.+..+|.+.++.+.
T Consensus       327 kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~  404 (432)
T KOG3843|consen  327 KAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFR  404 (432)
T ss_pred             hHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHH
Confidence            223567788888876432   11                      123566666678899999999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		2e-74
1oat_A	439	Ornithine Aminotransferase Length = 439		2e-74
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		4e-74
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		1e-73
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		2e-67
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		4e-67
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		2e-50
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		1e-36
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		4e-34
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		8e-34
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		1e-33
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		1e-33
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-33
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		7e-32
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		8e-32
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		4e-31
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		4e-31
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		1e-30
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-30
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-30
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		4e-28
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		4e-28
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-27
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		7e-26
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		1e-25
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		2e-25
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		5e-25
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		3e-24
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		6e-24
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		8e-23
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		9e-23
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		1e-22
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		1e-22
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		2e-22
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		3e-22
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		5e-22
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		7e-22
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		7e-22
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		7e-22
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		7e-22
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		1e-21
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		1e-21
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		1e-21
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		1e-21
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		2e-21
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		3e-21
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		7e-21
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		2e-20
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		4e-20
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		4e-20
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		5e-20
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		2e-19
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		2e-19
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-19
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		2e-19
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		3e-19
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		5e-19
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-18
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-18
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		3e-14
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		4e-13
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		6e-13
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		1e-12
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		5e-12
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		6e-12
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		6e-12
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		1e-11
3fq8_A	427	M248i Mutant Of Gsam Length = 427		1e-11
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		2e-11
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		3e-11
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		1e-10
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		1e-10
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		6e-10
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		2e-09
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		3e-09
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		3e-06
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		2e-05

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 183 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 242
Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 243 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 302
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 303 LEEENLAENADKLGIILRNEL-MKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 361
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 362 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/218 (60%), Positives = 170/218 (77%), Gaps = 2/218 (0%)
Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG H STYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/233 (51%), Positives = 165/233 (70%), Gaps = 1/233 (0%)
Query: 3   LQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62
           L+ P    +   K   +PN+CAF+VEP+QGEAG +VP D Y   V +LC +YNVLF+ADE
Sbjct: 175 LKVPYDDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADE 234
Query: 63  VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG 122
           VQTGLGRTGKLL  H+  V+PD+++LGKALSGG YPISA+LA+D+VM  L PG HGSTYG
Sbjct: 235 VQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYG 294
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL 181
           GNPLA  + + AL V++ E + ENA K+G  F   L+ +L    +V  VRGKGLL AI  
Sbjct: 295 GNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEF 354
Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              ++ V+D+C+K K+ GL+T+ + +  +RL+P L IT+++L E  +II+ T+
Sbjct: 355 KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTV 407

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  251 bits (640), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +PN+CAF+VEPIQGEAG +VP D YL+ V  +C +YNVLF+ADEVQTGLGRTGKLL +H+
Sbjct: 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHH 269
Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
            +V+PD+++LGKALSGG YPISAVLA+D++M  + PG HGSTYGGNPLA  + + AL+V+
Sbjct: 270 YNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL 329
Query: 139 LEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
           + E + ENA K+G  F   L+  L    IV  VRGKGLL AI     ++ V D+C+K+K+
Sbjct: 330 INEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKE 389
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
            GL+T+ + +  IRL+P L IT+++L E  +II+ T+
Sbjct: 390 NGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 426

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 4/211 (1%)
Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
           PN  AF++EPIQGEAG  +P  G+LK+   +C + NVLF+ADE+QTGLGRTGK+ A  ++
Sbjct: 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWD 240
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
           +V PD+ ILG AL GG++PIS   A+ +++G   PG+HGST+GGNPLAC +++ AL+V+ 
Sbjct: 241 NVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE 300
Query: 140 EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAG 199
           EE + E + ++GE    +L+   +P ++  VRGKGL   I L++        C ++K AG
Sbjct: 301 EEKLTERSLQLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEP---ARPYCEQLKAAG 356
Query: 200 LVTKPISNNIIRLSPALNITEQELREGLDII 230
           L+ K    N+IR++P L I+E++L      I
Sbjct: 357 LLCKETHENVIRIAPPLVISEEDLEWAFQKI 387

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 3/210 (1%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           + CA +VEPIQGE G V   + +L+ +R LC+++N L I DEVQTG+GRTG+L A  +  
Sbjct: 183 STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYG 242
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD++   KAL GG +P+ A+LA +E    +  GTHG+TYGGNPLA  +A   L++I  
Sbjct: 243 VTPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKDA 198
             M+    +  + F   L +      +   VRG GLL   VL+     +   +  +   A
Sbjct: 302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKA 361
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLD 228
           G++      N++R +PALN++E+E+  GLD
Sbjct: 362 GVMVLIAGGNVVRFAPALNVSEEEVTTGLD 391

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)
Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           + + CA +VEPIQGE G       +LK +R LC ++  L + DEVQ G+GRTG L A  +
Sbjct: 199 DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMH 258
Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PDI+   KAL GG +P+SA+L   E+      G+HGSTYGGNPLAC +A  A D+I
Sbjct: 259 YGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII 317
Query: 139 LEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLL-NAIVLDKSILEVYDVCIKMK 196
               +++  +   + F   L++     DI   +RG GLL  A +  K      D      
Sbjct: 318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA 377
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
           +AG++      +++R +P+L + E ++ EG+      +  + A
Sbjct: 378 EAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 12/223 (5%)
Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           + K + ++CA  +EPIQGE+G V     +L++ R LC +Y+ L + DEVQ G+GRTGKL 
Sbjct: 165 RRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF 224
Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
           A     V PD++   K L GG+ PI AV+  +E    L PG HG+T+GGNPLAC+  +T 
Sbjct: 225 AYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAGVTV 282
Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDV 191
           +  + +E  +E   + G     +L+  +   D+V  VRG GL+  I   + +   EV   
Sbjct: 283 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATK 342
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           C + K   L+  P  NN IR  P L +   E    +D+ + T+
Sbjct: 343 CFENK---LLVVPAGNNTIRFLPPLTVEYGE----IDLAVETL 378

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ A ++EPIQGE G +VP DG+L  +   C + +V+FIADEVQTG  RTG + A  +E 
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           + PD+++    ++GGL P+SAV    E+M +      G TYGGNP+AC  A+  ++ I  
Sbjct: 287 IDPDLIVTAXGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345
Query: 141 ENMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
           E ++  A ++ +I +  L R +   D +  VRG+G + A+ L K+     D      +C 
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCA 405
Query: 194 KMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDII 230
               AG++        N++R  P L+I +  L EGLD++
Sbjct: 406 GAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 12/223 (5%)
Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           + K + ++CA  +EPIQGE+G V     +L++ R LC +Y+ L + DEVQ G GRTGKL 
Sbjct: 177 RRKXSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF 236
Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
           A     V PD++   K L GG+ PI AV+  +E    L PG HG+T+GGNPLAC+  +T 
Sbjct: 237 AYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAGVTV 294
Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDV 191
           +  + +E  +E   + G     +L+  +   D+V  VRG GL   I   + +   EV   
Sbjct: 295 IKELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATK 354
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           C + K   L+  P  NN IR  P L +   E    +D+ + T+
Sbjct: 355 CFENK---LLVVPAGNNTIRFLPPLTVEYGE----IDLAVETL 390

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ A ++EPI GE G +VP DG+L  ++  C   +V+FIADEVQTG  RTG + A  +E+
Sbjct: 244 NLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHEN 303
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+++    ++ G +P+SAV    E+M        G T+GGNP+AC  A+  ++ I  
Sbjct: 304 VEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAALATIETIER 362
Query: 141 ENMIENAYKMGEIFRSE-LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK--- 196
           + M+E A ++  +     LR + + D +  VRG+G + A+ L KS     D  +  K   
Sbjct: 363 DGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAEPDAALTQKLAA 422
Query: 197 ---DAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
               AG++  T  +  N+IRL P L I+++ L EGLDI+
Sbjct: 423 AAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDIL 461

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 12/217 (5%)
Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           +     EPIQGE G V+P   +  +++ L  +Y +L + DEVQ GLGRTGKL AI   + 
Sbjct: 213 VAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
            PD++ L KAL GG+ PI A +   ++     PG H +T+GGN LAC +    +D++  +
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGGNALACAIGSKVIDIV--K 328
Query: 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCI-KMKDAGL 200
           +++ +  ++G+IF  EL+  L+ D    VRG GL  A  L+ +  +V D  I +    GL
Sbjct: 329 DLLPHVNEIGKIFAEELQG-LADD----VRGIGL--AWGLEYNEKKVRDRIIGESFKRGL 381
Query: 201 VTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
           +  P   + IR+ P L I+E+E ++GLDI+   I  +
Sbjct: 382 LLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 121/205 (59%), Gaps = 10/205 (4%)
Query: 26  MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85
           ++E IQGE G     + +L K++ +C + +VL I DEVQTG+GRTG+  A  + +++PD+
Sbjct: 177 IIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 86  VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 145
           + L K L GG+ PI A+LA +EV  +  PG+HGST+GGNPLAC+     +D +  E ++ 
Sbjct: 237 IALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLP 293
Query: 146 NAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI 205
           +  ++G  F+ +L+          V+G+GL+  + L++   E  D  +K  + GL+    
Sbjct: 294 HVREVGNYFKEKLKELGKGK----VKGRGLMLGLELER---ECKDYVLKALEKGLLINCT 346
Query: 206 SNNIIRLSPALNITEQELREGLDII 230
           +  ++R  P L I ++ +   + ++
Sbjct: 347 AGKVLRFLPPLIIQKEHIDRAISVL 371

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
           EN+++ A  +G+  +  L   +   P+I   VRG G + AI L         D  +    
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
           ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
           EN+++ A  +G+  +  L   +   P+I   VRG G + AI L         D  +    
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
           ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 17/228 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QGE G       +++++RALC ++ ++ IADE Q+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMG 258
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
           EN+++ A  +G+  +  L   +   P+I   VRG G + AI L         D  +    
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
           ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 17/228 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QG  G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
           EN+++ A  +G+  +  L   +   P+I   VRG G + AI L         D  +    
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
           ++  + +D GL+        N++R+   L I + ++R+GL+II    +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 15/231 (6%)
Query: 9   SKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           +KQV A      N+ A ++EP+ GE G VVP  G+L  ++  C+    +F+ADEVQTG  
Sbjct: 221 NKQVGAD-----NVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFA 275
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
           RTG L A  +E+V PD+++  K ++GGL P+SAV    E+M     G  G TYGGNPLAC
Sbjct: 276 RTGALFACEHENVVPDLIVTAKGIAGGL-PLSAVTGRAEIMDGPQSGGLGGTYGGNPLAC 334
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLDKSILE 187
             A+  +D I  EN++  A  +GE   S L +  + D  +  VRG+G + A+ L K    
Sbjct: 335 AAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELVKPGTT 394
Query: 188 VYDVCIKMKDA------GLV--TKPISNNIIRLSPALNITEQELREGLDII 230
             D  +  + A      GLV  T     N++R  P L++ +  L EGLDI+
Sbjct: 395 EPDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDIL 445

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%)
Query: 17  KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
           + +  I A  +E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 76  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLAC 128
             +E+V+PD++  GK ++GG  PI+   A +++               HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSIL 186
            +A+  L +   EN++E   +  +     L+   +   V  +R  G +    +V  K   
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 187 EV--------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
           E         Y V +KM++ G++T+P+  ++I   P L  T +EL E + I+   I+ + 
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 239 A 239
           +
Sbjct: 445 S 445

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%)
Query: 17  KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
           + +  I A  +E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 76  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLAC 128
             +E+V+PD++  GK ++GG  PI+   A +++               HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSIL 186
            +A+  L +   EN++E   +  +     L+   +   V  +R  G +    +V  K   
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 187 EV--------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
           E         Y V +KM++ G++T+P+  ++I   P L  T +EL E + I+   I+ + 
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 239 A 239
           +
Sbjct: 445 S 445

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           N   CA ++E +QGE G    +  + K +R LC + ++L IADE+Q G GR+GK  A  +
Sbjct: 177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEH 236
Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI    KAL  GL   + V+       +L  G HGSTYGGNPL C       ++ 
Sbjct: 237 AQILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIF 296
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
            EE ++EN  K+       L   ++  D     +G G    + LDKS+ +V  V  K ++
Sbjct: 297 KEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSLDKSV-KVAKVIQKCQE 355
Query: 198 AGLVTKPISNNIIRLSPALNITEQELRE 225
             L+      N +R  P L + ++ + E
Sbjct: 356 NALLLISCGENDLRFLPPLILQKEHIDE 383

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 25/240 (10%)
Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           I AF+ EPI    G +     Y K V   C ++  L I+DEV  G GRTGK       DV
Sbjct: 216 IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNYDV 275
Query: 82  RPDIVILGKALSGGLYPISAVLADDEVM------GTLVPGTHGSTYGGNPLACKLAMTAL 135
           +PDI+   K ++    P+SA     E+       G      H +T+GGNP AC LA+  L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVL--DKSILEVYD-- 190
           ++I  EN+IE + + G +   +L+  +    +V  +RGKGLL  I L  DK   E  D  
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDND 395
Query: 191 ----VCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
               V    K+ GL+      T    NNI+ L+P L I+ +E+      +I T+ T   +
Sbjct: 396 KIASVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIA----FVIGTLKTAXER 451

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 18/234 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           ++ A ++EPIQGE G +VP  G+L  + A  S+  V+FIADEVQTG  RTG   A  +E 
Sbjct: 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEG 284
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           + PDIV +   ++GG+ P+SAV    E+M  +  G  G TYGGNP+ C  A+ AL V+ E
Sbjct: 285 IVPDIVTMAXGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE 343
Query: 141 ENMIENAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAI-VLDKSILEVYDVCIK 194
            ++   A  +     + + SRLS      DI+  VRG+G + AI ++    LE      K
Sbjct: 344 LDLPARARAI----EASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTK 399
Query: 195 MKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
              A  +++ +         N+IRL P L I +  L EG+  + + I   A+ +
Sbjct: 400 SIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 6/202 (2%)
Query: 23  CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82
            A ++EP+QGE G       +L+  R +  +   L I DE+QTG+GRTGK  A  +  + 
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV 246
Query: 83  PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 142
           PDI+ L KAL GG+ P+   +  +EV  ++  G HG+T+GGNPLA    + A+  +    
Sbjct: 247 PDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKDAGLV 201
           + E A ++G  F  +LR+  SP I   VRG GL+  + L +K+   +  +  + +   L 
Sbjct: 306 LWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQ 364
Query: 202 TKPISNNIIRLSPALNITEQEL 223
             P    +IR  P L I +++L
Sbjct: 365 AGP---TVIRFLPPLVIEKEDL 383

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           +L    NI A  VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG + 
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL---------VPGTHGSTYGGNP 125
                 V PD++ + K ++ G  P+ AV+A  E+  T          V   HG TY  +P
Sbjct: 273 GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHP 332
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL---- 181
           +AC   + AL ++ +EN++++  ++   F   L        V  +R  GL  AI +    
Sbjct: 333 VACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRD 392
Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
             +I+  ++  + +  AG   +    + ++  P  N   Q+L    D +   +N +
Sbjct: 393 GDAIVRPFEAGMALWKAGFYVR-FGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
             PD +I  K L+ G +P+ AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
           A+DV++ E + EN  ++   F   L+       +   RG G + A+  V DK+    +D 
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                  +     D GL+ +P+  +++ L P   +TE ++ E  D +   ++ + A+
Sbjct: 410 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 18/237 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 236 TIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 295
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 133
             PD +I  K L+ G +P  AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 296 FTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
           A+DV+  E + EN  ++   F   L+       +   RG G   A+  V DK+    +D 
Sbjct: 356 AIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDG 415
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                  +     D GL+ +P+  +++ L P   +TE +  E  D +   ++ + A+
Sbjct: 416 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLEKALDKVFAE 471

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 18/237 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYD 295
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
             PD +I    L+ G +P+ AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 296 FTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
           A+DV++ E + EN  ++   F   L+       +   RG G + A+  V DK+    +D 
Sbjct: 356 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 415
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                  +     D GL+  P+  +++ L P   +TE ++ E  D +   ++ + A+
Sbjct: 416 NLSVSERIANTCTDLGLICFPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 471

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 17/233 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            + A ++EPIQGE G +VP +G+L  +     +  ++FIADEVQ+G  RTG+  A+ +E 
Sbjct: 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PDI+ + K ++GGL P+SA+    +++  + PG  G TYGGNP+AC  A+ A+D + +
Sbjct: 286 VVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ 344
Query: 141 ENMIENAYKMGEIFRSELR---SRLSP---DIVPVVRGKGLLNAIVLDKS---------I 185
            ++   A  + E+   +LR   + LS     +V  +RG+G + AI L +           
Sbjct: 345 HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELT 404
Query: 186 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
             V   C+K +   ++T     N+IRL P L I+++ L +GL+++   I   A
Sbjct: 405 KAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAHA 456

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6   PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
           P  S    A+L  +   + A +VEP+ QG  G    D  YL  +R +C +Y VL I DE+
Sbjct: 217 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 276
Query: 64  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HG 118
            TG GRTG L A  +  V PDI+ +GKAL+GG   ++A L   +V  T+  G      HG
Sbjct: 277 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHG 336
Query: 119 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
            T+  NPLAC +++ +++++L ++      ++     + L +  +   V  VR  G +  
Sbjct: 337 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 396
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
           I  D+ +    D+ +      D G+  +P  N +  + P
Sbjct: 397 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 431

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 228 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYD 287
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
             PD +I    L+ G +P+ AV+   ++   +           HG T  G+P+ C +A+ 
Sbjct: 288 FMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALK 347
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
           A+DV++ E + EN  ++   F + L+       +   RG G + A+  V DK     +D 
Sbjct: 348 AIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDA 407
Query: 192 CIKMK--------DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
            + +         D GL+ +P+  +I+ L P   +TE ++ E  + +   ++ + A+
Sbjct: 408 NLSVSERIANTCTDLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEKALDKVFAE 463

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 21  NICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HY 78
            + AFM EP+ G +  A+ P  GY ++VR +C +  ++FIADEV +G+GR G  LA+  +
Sbjct: 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRW 249
Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTA 134
             V PDI +LGK L+ G  P++ +LA  +V  T++ G+    HG TY G+P++    ++ 
Sbjct: 250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSV 309
Query: 135 LDVILEENMIENAYKMG 151
           LD++  E++   A + G
Sbjct: 310 LDIVEREDLTGAAKERG 326

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           + AF+ EP+QG  G +V  D Y  +++ +C +Y++L IADEV  G GRTG         +
Sbjct: 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI 283
Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVIL 139
           RP I+ + K LS G  PI   +  DEV   +      HG TY G+P+A  +A+  L ++ 
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343
Query: 140 EENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
           EEN++++   +   +  E    L+   +V   +  G++ +I L  +         +    
Sbjct: 344 EENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTI 403
Query: 199 GLVTKP--ISNNIIR--------LSPALNITEQELRE 225
           G + +    +NN+I         +SP L IT  E+ E
Sbjct: 404 GYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDE 440

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
            +  LDV+  + ++  A  MG+  R  L   +   D +  VRG+GLL    IV D+   E
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 373
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
             D         C+ +     +V  P    + R++P L ++E E+  GL ++   I 
Sbjct: 374 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 198 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 257
Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 258 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 312
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
            +  LDV+  + ++  A  MG+  R  L   +   D +  VRG+GLL    IV D+   E
Sbjct: 313 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 372
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
             D         C+ +     +V  P    + R++P L ++E E+  GL ++   I 
Sbjct: 373 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
            +  LDV+  + ++  A  MG+  R  L   +   D +  VRG+GLL    IV D+   E
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 373
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
             D         C+ +     +V  P    + R++P L ++E E+  GL ++   I 
Sbjct: 374 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
             + V PDI+ L K L  GL P++A++    +      +G L   TH S    +PL   +
Sbjct: 257 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 311
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
            +  LDV+  + ++  A  MG+  R  L   +   D +  VRG+GLL    IV D+   E
Sbjct: 312 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 371
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
             D         C+ +     +V  P    + R++P L ++E E+  GL ++   I 
Sbjct: 372 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           +Q  A  ++ P+ I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
            TG   A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLASTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
           N      A   L+VI  E + E A + G+  R+ L   L+ D   VV   RG+GL+ A  
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
           L  +  +  ++  ++    ++  P   + +R  P L ++  E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6   PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
           P  S    A+L  +   + A +VEP+ QG  G    D  YL  +R +C +Y VL I DE+
Sbjct: 222 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 281
Query: 64  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS---- 119
            TG GRTG L A  +  V PDI+ +GKAL+GG   ++A L   +V  T+  G  G+    
Sbjct: 282 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRG 341
Query: 120 -TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
            T+  NPLAC +++ +++++L ++      ++     + L +  +   V  VR  G +  
Sbjct: 342 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 401
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
           I  D+ +    D+ +      D G+  +P  N +  + P
Sbjct: 402 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 436

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6   PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
           P  S    A+L  +   + A +VEP+ QG  G    D  YL  +R +C +Y VL I DE+
Sbjct: 197 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 256
Query: 64  QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS---- 119
            TG GRTG L A  +  V PDI+ +GKAL+GG   ++A L   +V  T+  G  G+    
Sbjct: 257 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRG 316
Query: 120 -TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
            T+  NPLAC +++ +++++L ++      ++     + L +  +   V  VR  G +  
Sbjct: 317 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 376
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
           I  D+ +    D+ +      D G+  +P  N +  + P
Sbjct: 377 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 411

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           +Q  A  ++ P+ I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
            TG   A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
           N      A   L+VI  E + E A + G+  R+ L   L+ D   VV   RG+GL+ A  
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
           L  +  +  ++  ++    ++  P   + +R  P L ++  E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 25/240 (10%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YE 79
            I AF+ EPI    G ++P  GY  + +A+C ++++L+I+DEV TG GR G+  A     
Sbjct: 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVM----GTLVPG---THGSTYGGNPLACKLAM 132
            V PDI+   K ++ G  P+  +   + V+    G    G   T+G TY   P+AC  A+
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340
Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKS------ 184
             ++++  E +++ A +M + F + L S      V   R  GL+  +  +LD +      
Sbjct: 341 ANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTA 400
Query: 185 -----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
                 L++ + C ++   GL+ +P+ +  + +SP L I+  ++ E + I+   I  ++A
Sbjct: 401 EDKAFTLKIDERCFEL---GLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSA 456

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           +Q  A  ++ P+ I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
            TG   A    DV PDIV  GK        +  V+A    DEV   +  VP    S++GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSSWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
           N      A   L+VI  E + E A + G+  R+ L   L+ D   VV   RG+GL+ A  
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
           L  +  +  ++  ++    ++  P   + +R  P L ++  E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           +Q  A  ++ P+ I  F+ EPIQG  G       +   +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
            TG   A    DV PDIV  GK        +  V+A    DEV   +  VP    ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
           N      A   L+VI  E + E A + G+  R+ L   L+ D   VV   RG+GL+ A  
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
           L  +  +  ++  ++    ++  P   + +R  P L ++  E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            + AF+ EPIQG  G +VP   Y  ++  +C +Y+VL +ADEV  G GRTG+     +  
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 137
            +PD+    K LS G  PI AV     V   L+ G    HG TY G+P+   +A   +  
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338
Query: 138 ILEENMIENAY-KMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKS 184
           + +E +++     +G   +   R   S  + V  VRG G++ A  L K+
Sbjct: 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKN 387

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 20/216 (9%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
              ILE    +      E+   +LR +L+P    ++V  VR   +L AI + ++   V  
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
             ++    + G+  +P    +I L P   I  Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPL 126
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPL 315

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPL 126
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
              ILE    +      E+   +LR +L+P    ++V  VR   +L AI + ++   V  
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
             ++    + G+  +P    +I L P   I  Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIV----LDKSIL 186
              ILE    +      E+   +LR +L+P    ++V  VR  G +  +     ++ + L
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL 379
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224
           + + V     + G+  +P    +I L P   I  Q+L+
Sbjct: 380 QKFFV-----EQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIV----LDKSIL 186
              ILE    +      E+   +LR +L+P    ++V  VR  G +  +     ++ + L
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL 379
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224
           + + V     + G+  +P    +I L P   I  Q+L+
Sbjct: 380 QKFFV-----EQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG G TGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
              ILE    +      E+   +LR +L+P    ++V  VR   +L AI + ++   V  
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
             ++    + G+  +P    +I L P   I  Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG G+TGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHA 263
Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
           ++ PDI+ LG AL+GG   +SA L   EV  T+  G      HG T+ GNPLA   A  A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
              ILE    +      E+   +LR +L+P    ++V  VR   +L AI + ++   V  
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
             ++    + G+  +P    +I L P   I  Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 15  KLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
           KL + P  +I A  +EPIQ + G +VP DG+L+K   +C  + +L + DEV+ GL R+G+
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
           L    +E   PDI++L     GG  P+SAV+A  E++          T  GNP++    +
Sbjct: 266 LHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGL 323
Query: 133 TALDVILEENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------D 182
             L+ I  +++   A + G + R   SEL  R    ++  +RG+GL   + L       +
Sbjct: 324 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP--LIGDIRGRGLACGMELVCDRQSRE 381
Query: 183 KSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
            +  E   +  +    GLV   +  + N++  +P L ITE ++ + LD++    + ++A
Sbjct: 382 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 440

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 15  KLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
           KL + P  +I A  +EPIQ + G +VP DG+L+K   +C  + +L + DEV+ GL R+G+
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
           L    +E   PDI++L     GG  P+SAV+A  E++          T  GNP++    +
Sbjct: 253 LHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGL 310
Query: 133 TALDVILEENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------D 182
             L+ I  +++   A + G + R   SEL  R    ++  +RG+GL   + L       +
Sbjct: 311 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP--LIGDIRGRGLACGMELVCDRQSRE 368
Query: 183 KSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
            +  E   +  +    GLV   +  + N++  +P L ITE ++ + LD++    + ++A
Sbjct: 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGK 72
           +    I A + EP+ G AG +VP + +LK +      Y VL IADEV TG     G   +
Sbjct: 195 RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGATE 253
Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM---GTLVPGTHGSTYGGNPLACK 129
           LL +     +PD+V LGK L GGL P +A     E+M     L P     T  GNPLA  
Sbjct: 254 LLGL-----KPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMA 307
Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVY 189
             +  L+ +LEEN    AY        +L +RL   +  V++ KGL + +    S++ V+
Sbjct: 308 AGLATLE-LLEENPGYYAYL------EDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVF 360

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I   +VEP+ G  G V P +G+L+ +R +  QY  L I DEV TG  R     A  Y  
Sbjct: 208 DIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFG 266
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTAL 135
           V PD+  LGK + GGL P+ A     E+M  + P        T  GNPLA    +  L
Sbjct: 267 VTPDLTCLGKVIGGGL-PVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETL 323

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 16  LKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
            +  PN I   ++EP+ G AG + PD G+L+ +R L  QY  L + DEV TG  R     
Sbjct: 177 FEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGG 235
Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLA 131
           A     V PD+  LGK + GGL P+ A     E+M  + P        T  GNPLA    
Sbjct: 236 AQEKFGVTPDLTTLGKVIGGGL-PVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAG 294
Query: 132 MTALDVILEENMIEN 146
           +  L+++      E+
Sbjct: 295 IKTLEILSRPGSYEH 309

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           K    +   +VEPIQ E G     D + +K+R +  ++   F+ DEVQTG G TGK  A 
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313
Query: 77  HYE--DVRPDIVILGKA-LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 133
            +   D   D++   K  ++GG +         E      P    +T+ G+P    L   
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGDPSKNLLLAE 366
Query: 134 ALDVILEENMIENAYKMGEIFRS---ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD 190
            +++I  E+++ NA   G++  +   +L++R  P  +  VRG+G   +   D     + +
Sbjct: 367 VINIIKREDLLSNAAHAGKVLLTGLLDLQARY-PQFISRVRGRGTFCS--FDTPDESIRN 423
Query: 191 VCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
             I + ++ G++     +  IR  P L   +      L+I 
Sbjct: 424 KLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIF 464

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  
Sbjct: 192 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 250
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
           R           V PD+  LGK + GGL P+ A     E+M  + P        T  GNP
Sbjct: 251 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 309
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
           LA    +  L+++ +    E        +  ++  RLS  ++ + +  G
Sbjct: 310 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 350

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 245
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
           R           V PD+  LGK + GGL P+ A     E+M  + P        T  GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
           LA    +  L+++ +    E        +  ++  RLS  ++ + +  G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  
Sbjct: 192 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 250
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
           R           V PD+  LGK + GGL P+ A     E+M  + P        T  GNP
Sbjct: 251 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 309
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
           LA    +  L+++ +    E        +  ++  RLS  ++ + +  G
Sbjct: 310 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 350

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF- 245
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
           R           V PD+  LGK + GGL P+ A     E+M  + P        T  GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
           LA    +  L+++ +    E        +  ++  RLS  ++ + +  G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10  KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF- 245
Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
           R           V PD+  LGK + GGL P+ A     E+M  + P        T  GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
           LA    +  L+++ +    E        +  ++  RLS  ++ + +  G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
           +   +VEP+ G    + P   +L  +RALC ++  L I DEV TG  R     A  Y  V
Sbjct: 201 VACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHV 259
Query: 82  RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVI 138
            PD+  LGK + GG  P+ A     EV   L P        T  GNP+A       L  I
Sbjct: 260 IPDLTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEI 318
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
            +  + E   ++ +   + LR     + +P+V
Sbjct: 319 SQVGVYETLTELTDSLATGLRHAAKEENIPLV 350

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I   +VEP+ G  G V P  G+L+ +R +  Q   L I DEV TG  R        Y  
Sbjct: 200 DIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGYYG 258
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 137
           V PD+  LGK + GGL P+ A     E+   + P        T  GNPLA       L  
Sbjct: 259 VTPDLTCLGKVIGGGL-PVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQ 317
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVP 168
           +  E+ +E   K  E   + LR       +P
Sbjct: 318 LTPESYVEFERKA-EXLEAGLRKAAEKHGIP 347

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 8   KSKQVPAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 66
           K  Q  + ++ + ++ A ++EP I G  G  + D  + + +   C    +  I DEV TG
Sbjct: 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTG 640
Query: 67  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 120
             R G          +PDI    K L+GG+ P++  LA D V  +    +      HG +
Sbjct: 641 FWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHS 700
Query: 121 YGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGL 175
           Y  + + C  A  A+    +     N+      + E++  EL  ++S    V  V   G 
Sbjct: 701 YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGT 760
Query: 176 LNAIVLDK-------SILEVYDVCIKMKDAGLVTKPISNNI 209
           L A+ L         + L    + I +++ G+ T+P+ N I
Sbjct: 761 LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVI 801

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGK 72
           K    + A +VEPI G  G V P  G+L+KV  L  +   L I DEV T      G    
Sbjct: 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQD 257
Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---MGTLVPGTHGSTYGGNPLACK 129
           LL      V PD+  LG  + GGL PI A     E+   +  L P     T  GNP +  
Sbjct: 258 LLG-----VTPDLTALGXVIGGGL-PIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXA 311
Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV--RGKGLLNAIVLDKSILE 187
             +  L+V+ +E + E   ++G      +  + +   + +   R KG L  +    + +E
Sbjct: 312 SGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALT-VYFTTNTIE 370
Query: 188 VYDVC 192
            YD  
Sbjct: 371 DYDAA 375

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I   +VEP+   AG + P   +L  ++ L  +   L I DEV TG  R G   A  Y +
Sbjct: 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFN 261
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDV 137
           +  DI++LGK + GG +P+ AV    EVM  L P     +  T+  +P+     +  L  
Sbjct: 262 IEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA 320
Query: 138 ILEE 141
           + EE
Sbjct: 321 LEEE 324

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 8   KSKQVPAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 66
           K  Q  + ++ + ++ A ++EP I G  G    D  + + +   C    +  I DEV TG
Sbjct: 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTG 640
Query: 67  LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 120
             R G          +PDI    K L+GG  P++  LA D V  +    +      HG +
Sbjct: 641 FWRLGVETTTELLGCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHS 700
Query: 121 YGGNPLACKLAMTAL----DVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGL 175
           Y  +   C  A  A+    D     N+      + E++  EL  ++S    V  V   G 
Sbjct: 701 YSAHAXGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGT 760
Query: 176 LNAIVLDK-------SILEVYDVCIKMKDAGLVTKPISNNI 209
           L A+ L         + L    + I +++ G+ T+P+ N I
Sbjct: 761 LFALELKADASNSGYASLYAKSLLIXLREDGIFTRPLGNVI 801

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I AF+ EP+    G     D +L++   L  QY  LFI DEV +G  R G        D
Sbjct: 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLD 259
Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTAL 135
           V+PD+  L KA S G  P   +   ++VMG L  G+     H  T+ GNP+    A+ A+
Sbjct: 260 VQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318
Query: 136 DVILEENMIENAYKMGEIFRSEL 158
           D ILE+++      +G+  R  +
Sbjct: 319 DTILEDDVCAKINDLGQFAREAM 341

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGK 72
           +  P I   +VEP+QG +G +     +L+ +R   +Q   L + DEV T      G   K
Sbjct: 216 RHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANK 275
Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLAC 128
           L       +R D+  LGK + GG+    A     +VM    P T    H  T+  N +  
Sbjct: 276 L------GIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTM 328
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRS 160
                 L  +          + GE  R+ L +
Sbjct: 329 AAGYAGLTKLFTPEAAGALAERGEALRARLNA 360

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 16  LKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL---GRTG 71
           LK + + CA  +VEP+ G  G V  +  +L  +RA  S+   L I DEV T     G   
Sbjct: 227 LKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ 286
Query: 72  KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 126
           ++L I       D+  LGK + GG+    A     ++M    P       H  T+  N L
Sbjct: 287 EMLGI-----SADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNIL 340
Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 158
                  AL  I       +    G+ FR+ L
Sbjct: 341 TMSAGHAALTQIYTRQAASDLSASGDRFRANL 372

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-125
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-124
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-124
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	8e-90
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-85
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	9e-85
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	8e-84
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	8e-83
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-82
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	2e-82
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	4e-82
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	2e-81
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	9e-81
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	6e-79
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	6e-77
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	5e-73
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	3e-71
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-69
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	2e-68
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	2e-67
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	2e-67
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	4e-65
3hmu_A	472	Aminotransferase, class III; structural genomics,	5e-65
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	3e-64
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	9e-64
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	8e-59
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	9e-59
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	5e-58
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	1e-25
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	3e-25
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	1e-22
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	3e-22
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	6e-22
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	9e-22
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	9e-21
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	1e-18
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	1e-04
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	6e-04

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  360 bits (926), Expect = e-125
 Identities = 119/224 (53%), Positives = 164/224 (73%), Gaps = 1/224 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+CAF+VEPIQGEAG +VP D YL+ V  +C +YNVLF+ADEVQTGLGRTGKLL +H
Sbjct: 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 268

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           + +V+PD+++LGKALSGG YPISAVLA+D++M  + PG HGSTYGGNPLA  + + AL+V
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 328

Query: 138 ILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
           ++ E + ENA K+G  F   L+  L    IV  VRGKGLL AI     ++ V D+C+K+K
Sbjct: 329 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 388

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
           + GL+T+ + +  IRL+P L IT+++L E  +II+ T+     +
Sbjct: 389 ENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  356 bits (916), Expect = e-124
 Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
            PN  AF++EPIQGEAG  +P  G+LK+   +C + NVLF+ADE+QTGLGRTGK+ A  +
Sbjct: 180 TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
           ++V PD+ ILGKAL GG++PIS   A+ +++G   PG+HGST+GGNPLAC +++ AL+V+
Sbjct: 240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL 299

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
            EE + E + ++GE    +L+  +   ++  VRGKGL   I L++        C ++K A
Sbjct: 300 EEEKLTERSLQLGEKLVGQLK-EIDNPMITEVRGKGLFIGIELNEP---ARPYCEQLKAA 355

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
           GL+ K    N+IR++P L I+E++L      I   ++
Sbjct: 356 GLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  357 bits (919), Expect = e-124
 Identities = 133/220 (60%), Positives = 172/220 (78%), Gaps = 2/220 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ LA+ 
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
           + EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ ++   + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
           D GL+ KP   +IIR +P L I E ELRE ++II  TI +
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  269 bits (691), Expect = 8e-90
 Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 4/212 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +    A ++EP+QGE G       +L+  R +  +   L I DE+QTG+GRTGK  A  +
Sbjct: 183 DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 242

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI+ L KAL GG+ P+   +  +EV  ++  G HG+T+GGNPLA    + A+  +
Sbjct: 243 FGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 301

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
               + E A ++G  F  +LR+  SP I   VRG GL+  + L +       +    K+ 
Sbjct: 302 ERTRLWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAP--YIARLEKEH 358

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
            ++       +IR  P L I +++L   ++ +
Sbjct: 359 RVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  259 bits (665), Expect = 1e-85
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           + + CA +VEPIQGE G       +LK +R LC ++  L + DEVQ G+GRTG L A  +
Sbjct: 199 DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMH 258

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PDI+   KAL GG  P+SA+L   E+      G+HGSTYGGNPLAC +A  A D+I
Sbjct: 259 YGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII 317

Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
               +++  +   + F   L++     DI   +RG GLL    L         D      
Sbjct: 318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA 377

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
           +AG++      +++R +P+L + E ++ EG+      +  + A
Sbjct: 378 EAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  258 bits (661), Expect = 9e-85
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 14  AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 73
           A      +I  F+ EPIQGE G       +   +R LC +++ L I DEVQTG G TG  
Sbjct: 224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTA 283

Query: 74  LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 133
            A    DV PDIV  GK            + +       VP    ST+GGN      A  
Sbjct: 284 WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDV 191
            L+VI  E + E A + G+  R+ L    +  P +V   RG+GL+ A  L  +     ++
Sbjct: 344 ILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD-RDEL 402

Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
             ++    ++  P   + +R  P L ++  E+   +  +
Sbjct: 403 IRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  254 bits (652), Expect = 8e-84
 Identities = 72/210 (34%), Positives = 118/210 (56%), Gaps = 10/210 (4%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            +     EPIQGE G V+P   +  +++ L  +Y +L + DEVQ GLGRTGKL AI   +
Sbjct: 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN 271

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
             PD++ L KAL GG+ PI A +   ++     PG H +T+GGN LAC +    +D++  
Sbjct: 272 TVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVIDIV-- 327

Query: 141 ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL 200
           ++++ +  ++G+IF  EL+      +   VRG GL   +  ++  +    +  +    GL
Sbjct: 328 KDLLPHVNEIGKIFAEELQ-----GLADDVRGIGLAWGLEYNEKKV-RDRIIGESFKRGL 381

Query: 201 VTKPISNNIIRLSPALNITEQELREGLDII 230
           +  P   + IR+ P L I+E+E ++GLDI+
Sbjct: 382 LLLPAGRSAIRVIPPLVISEEEAKQGLDIL 411

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  251 bits (644), Expect = 8e-83
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           N   CA ++E +QGE G    +  + K +R LC + ++L IADE+Q G+GR+GK  A  +
Sbjct: 177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEH 236

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGTHGSTYGGNPLACKLAMTALDV 137
             + PDI+   KAL  GL  + A + + +V   +L  G HGSTYGGNPL C       ++
Sbjct: 237 AQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEI 295

Query: 138 ILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
             EE ++EN  K+       L   ++  D     +G G +  + LDKS+ +V  V  K +
Sbjct: 296 FKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSV-KVAKVIQKCQ 354

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           +  L+      N +R  P L + ++ + E  + +   +
Sbjct: 355 ENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL 392

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  253 bits (648), Expect = 1e-82
 Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 10/219 (4%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ A ++EPIQGE G +VP DG+L  +   C + +V+FIADEVQTG  RTG + A  +E 
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           + PD+++  K ++GGL P+SAV    E+M +      G TYGGNP+AC  A+  ++ I  
Sbjct: 287 IDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345

Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
           E ++  A ++ +I +  L   +   D +  VRG+G + A+ L K+     D      +C 
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCA 405

Query: 194 KMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 230
               AG++        N++R  P L+I +  L EGLD++
Sbjct: 406 GAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  250 bits (641), Expect = 2e-82
 Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           + ++CA  +EPIQGE+G V     +L++ R LC +Y+ L + DEVQ G+GRTGKL A   
Sbjct: 181 SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQK 240

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PD++   K L GG+ PI AV+ ++     L PG HG+T+GGNPLAC+  +T +  +
Sbjct: 241 YGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLEPGDHGTTFGGNPLACRAGVTVIKEL 298

Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
            +E  +E   + G     +L+      D+V  VRG GL+  I   + +    +V  K  +
Sbjct: 299 TKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV-SNREVATKCFE 357

Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
             L+  P  NN IR  P L +   E+   ++ +   +  +
Sbjct: 358 NKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  250 bits (642), Expect = 4e-82
 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 11/220 (5%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+    
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           V PD+    K+++GG  P++ V    EVM  + PG  G TY GNP+AC  A+  L V  +
Sbjct: 259 VAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317

Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVC 192
           EN+++ A  +G+  +  L +       +  VRG G + AI L +             ++ 
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIV 377

Query: 193 IKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 230
            + +D GL+        N++R+   L I + ++R+GL+II
Sbjct: 378 ARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  247 bits (634), Expect = 2e-81
 Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 10/216 (4%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +      ++E IQGE G     + +L K++ +C + +VL I DEVQTG+GRTG+  A  +
Sbjct: 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQH 229

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
            +++PD++ L K L GG+ PI A+LA +EV  +  PG+HGST+GGNPLAC+     +D +
Sbjct: 230 FNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV 288

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
             E ++ +  ++G  F+ +L+          V+G+GL+  + L++   E  D  +K  + 
Sbjct: 289 --EKLLPHVREVGNYFKEKLKELGKGK----VKGRGLMLGLELER---ECKDYVLKALEK 339

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           GL+    +  ++R  P L I ++ +   + ++   +
Sbjct: 340 GLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  248 bits (635), Expect = 9e-81
 Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           ++ A ++EPIQGE G +VP  G+L  + A  S+  V+FIADEVQTG  RTG   A  +E 
Sbjct: 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEG 284

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
           + PDIV + K ++GG+ P+SAV    E+M  +  G  G TYGGNP+ C  A+ AL V+ E
Sbjct: 285 IVPDIVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE 343

Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
            ++   A  +     S L +     DI+  VRG+G + AI + K      D      +  
Sbjct: 344 LDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAA 403

Query: 194 KMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
           +    G++        N+IRL P L I +  L EG+  + + I   A+ +
Sbjct: 404 EALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  242 bits (621), Expect = 6e-79
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A   + 
Sbjct: 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 262

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVI 138
           V PDI+ L K L  G  P++A++    +            +T+  +PL   + +  LDV+
Sbjct: 263 VTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 321

Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILE-----VYD 190
             + ++  A  MG+  R  L   +   D +  VRG+GLL  +  V D+   E        
Sbjct: 322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAK 381

Query: 191 VCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 230
           +  +  + GL    +       + R++P L ++E E+  GL ++
Sbjct: 382 ITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 425

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  237 bits (608), Expect = 6e-77
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           +I A  +EPIQ + G +VP DG+L+K   +C  + +L + DEV+ GL R+G+L    +E 
Sbjct: 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
             PDI++LGK L GGL P+SAV+A  E++          T  GNP++    +  L+ I  
Sbjct: 261 FVPDILVLGKGLGGGL-PLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGLAVLETIDR 318

Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAI--VLDKSILE-----VYDVC 192
           +++   A + G + R  L        ++  +RG+GL   +  V D+   E        + 
Sbjct: 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378

Query: 193 IKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
            +    GLV     ++ N++  +P L ITE ++ + LD++    + ++A
Sbjct: 379 YRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  228 bits (584), Expect = 5e-73
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 11/218 (5%)

Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           K    +   +VEPIQ E G     D + +K+R +  ++   F+ DEVQTG G TGK  A 
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313

Query: 77  HYEDVR--PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
            +  +    D++   K +  G                  P    +T+ G+P    L    
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGG-FFHKEEFRPN-----APYRIFNTWLGDPSKNLLLAEV 367

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVC 192
           +++I  E+++ NA   G++  + L    +  P  +  VRG+G   +       +    + 
Sbjct: 368 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI-RNKLI 426

Query: 193 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
              ++ G++     +  IR  P L   +      L+I 
Sbjct: 427 SIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIF 464

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  223 bits (571), Expect = 3e-71
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 21/238 (8%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I AF++EPI    G ++    Y+K V   C ++  L I+DEV  G GRTGK       D
Sbjct: 215 TIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYD 274

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMTA 134
           V+PDI+ + K ++    P+SA     E+              H +T+GGNP AC LA+  
Sbjct: 275 VKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKN 334

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD- 190
           L++I  EN+IE + +MG +   +L+  +    +V  +RGKGLL  I  V DK   E  D 
Sbjct: 335 LEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDN 394

Query: 191 -----VCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 237
                V    K+ GL+           NNI+ L+P L I+ +E+   +  +   +  +
Sbjct: 395 DKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  220 bits (562), Expect = 1e-69
 Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I  F  EP+ G  G + P  GY + +  +  +Y++  I+DEV  G GRTG        D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
             PD +I  K L+ G +P+ AV+   E+   L           HG T  G+P+ C +A+ 
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
           A+DV++ E + EN  ++   F   L+       +   RG G + A+  V DK+    +D 
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409

Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                  +     D GL+ +P+  +++ L P   +TE ++ E  D +   ++ + A+
Sbjct: 410 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  215 bits (551), Expect = 2e-68
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 22/241 (9%)

Query: 21  NICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HY 78
            + AFM EP+ G    A+ P  GY ++VR +C +  ++FIADEV +G+GR G  LA+  +
Sbjct: 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRW 249

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTA 134
             V PDI +LGK L+ G  P++ +LA  +V  T++ G+    HG TY G+P++    ++ 
Sbjct: 250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSV 309

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI-VLDKSILEVYD-- 190
           LD++  E++   A + G    + L++  +    +  VRG GLL  + + D +  + ++  
Sbjct: 310 LDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETP 369

Query: 191 -----VCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
                +       GL+T P          + + L P L+IT  E+   L ++   +  + 
Sbjct: 370 GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVL 429

Query: 239 A 239
            
Sbjct: 430 G 430

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  213 bits (545), Expect = 2e-67
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
           NI A  VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG +       
Sbjct: 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG 278

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---------HGSTYGGNPLACKLA 131
           V PD++ + K ++ G  P+ AV+A  E+  T +            HG TY  +P+AC   
Sbjct: 279 VTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAG 338

Query: 132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEV- 188
           + AL ++ +EN++++  ++   F   L        V  +R  GL  AI          V 
Sbjct: 339 LAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVR 398

Query: 189 -YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
            ++  + +  AG   +   + +    P  N   Q+L    D +   +N +
Sbjct: 399 PFEAGMALWKAGFYVRFGGDTLQ-FGPTFNSKPQDLDRLFDAVGEVLNKL 447

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  213 bits (546), Expect = 2e-67
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 19/239 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            I AF+ EPI G  G V P  GY +K++A+  +Y+VL +ADEV TG GR G +    +  
Sbjct: 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYG 280

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
           ++PD++ + K L+    P+S V+  D V   LV G+       HG TY  +P+     + 
Sbjct: 281 IKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVA 340

Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD 190
            L++I E +++ NA + G  FR+EL   +     V  VRG G+L A+  V DK     +D
Sbjct: 341 NLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFD 400

Query: 191 --------VCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                   V   +  +G++ + +   +I+  +P L +T ++    +    + + ++ A 
Sbjct: 401 ASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFAN 459

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  208 bits (531), Expect = 4e-65
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            + AF+ EPIQG  G +VP   Y  ++  +C +Y+VL +ADEV  G GRTG+     +  
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDV 137
            +PD+    K LS G  PI AV     V   L+ G    HG TY G+P+   +A   +  
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338

Query: 138 ILEENMIENA-YKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD--- 190
           + +E +++     +G   +   R   S  + V  VRG G++ A   V +K+  E++    
Sbjct: 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFG 398

Query: 191 -----VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                         L+ +   ++I+  +P L +T  E+ E L +    +      
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIV-SAPPLVMTRAEVDEMLAVAERCLEEFEQT 452

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  208 bits (531), Expect = 5e-65
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 15/234 (6%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
            + AF+ EP+QG  G +V  D Y  +++ +C +Y++L IADEV  G GRTG         
Sbjct: 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMG 282

Query: 81  VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVI 138
           +RP I+ + K LS G  PI   +  DEV   +      HG TY G+P+A  +A+  L ++
Sbjct: 283 IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL 342

Query: 139 LEENMIENAYKMGE-IFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD----- 190
            EEN++++   +     + +  +     +V   +  G++ +I    +K+    +      
Sbjct: 343 EEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGT 402

Query: 191 ----VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                  +     L+ + + + +I +SP L IT  E+ E    I  +++   A+
Sbjct: 403 IGYICRERCFANNLIMRHVGDRMI-ISPPLVITPAEIDEMFVRIRKSLDEAQAE 455

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  206 bits (526), Expect = 3e-64
 Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 19/238 (7%)

Query: 21  NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYE 79
            I AF+ EPI    G ++P  GY  + +A+C ++++L+I+DEV TG GR G+  A     
Sbjct: 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAM 132
            V PDI+   K ++ G  P+  +   + V+  +           +G TY   P+AC  A+
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340

Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
             ++++  E +++ A +M + F + L S      V   R  GL+  +  +LD +  +   
Sbjct: 341 ANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTA 400

Query: 191 --------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
                   +  +  + GL+ +P+ +  + +SP L I+  ++ E + I+   I  ++A 
Sbjct: 401 EDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAA 457

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  204 bits (521), Expect = 9e-64
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 19/237 (8%)

Query: 21  NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A  +E  +QG +G +V  +GYL  VR LC+ Y+VL I DEV TG GRTGK+ A  +E
Sbjct: 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHE 269

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAM 132
           +V+PD++  GK ++GG  PI+   A +++               HG +Y GN L C +A+
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329

Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
             L +   EN++E   +  +     L+   +   V  +R  G +     V  K   E Y 
Sbjct: 330 ENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYP 389

Query: 191 --------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
                   V +KM++ G++T+P+ + I    P L  T +EL E + I+   I+ + +
Sbjct: 390 ADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLASTAEELSEMVAIMKQAIHEVTS 445

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  191 bits (488), Expect = 8e-59
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 8/225 (3%)

Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            + A +VEP+ QG  G    D  YL  +R +C +Y VL I DE+ TG GRTG L A  + 
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA 292

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
            V PDI+ +GKAL+GG   ++A L   +V  T+  G      HG T+  NPLAC +++ +
Sbjct: 293 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIK 194
           ++++L ++      ++     + L +  +   V  VR  G +  I  D+ + ++      
Sbjct: 353 VELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV-DLAVATPA 411

Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
             D G+  +P   N++   P    T  E+ +    ++     + +
Sbjct: 412 ALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  190 bits (486), Expect = 9e-59
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 21  NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
            I A ++EPI QG  G  +    +LK++R +C +  +L IADE+ TG GRTGKL A  + 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLA 131
           ++ PDI+ LGKAL+GG   +SA L   EV         G  +   HG T+ GNPLAC  A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFM---HGPTFMGNPLACAAA 320

Query: 132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDV 191
             +L ++   +  +    +    R +L      ++V  VR  G +  +     +  +  +
Sbjct: 321 NASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-NMAAL 379

Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
                + G+  +P    +I L P   I  Q+L+     +   + 
Sbjct: 380 QKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  195 bits (498), Expect = 5e-58
 Identities = 53/240 (22%), Positives = 91/240 (37%), Gaps = 20/240 (8%)

Query: 14  AKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
           + ++ + ++ A ++EP+  G  G  + D  + + +   C    +  I DEV TG  R G 
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646

Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPL 126
                    +PDI    K L+GG+ P++  LA D V     G        HG +Y  + +
Sbjct: 647 ETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAM 706

Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL-RSRLSP----DIVPVVRGKGLLNAIVL 181
            C  A  A+    +     N    G+  R       +        V  V   G L A+ L
Sbjct: 707 GCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALEL 766

Query: 182 DKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
                      L    + I +++ G+ T+P+ N I  L      + +  R  L  +   +
Sbjct: 767 KADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLYKRL 825

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  102 bits (257), Expect = 1e-25
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE 79
           I AF+ EP+    G     D +L++   L  QY  LFI DEV +G  +G  G        
Sbjct: 202 IAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG---MQALL 258

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY-----GGNPLACKLAMTA 134
           DV+PD+  L KA +GGL P   +   ++VMG L  G+           GNP+    A+ A
Sbjct: 259 DVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAA 317

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           +D ILE+++      +G+  R  +    +   +  +
Sbjct: 318 IDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWL 353

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  101 bits (255), Expect = 3e-25
 Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LG 68
                LK + +   A +VEP+ G  G V  +  +L  +RA  S+   L I DEV T  L 
Sbjct: 222 GTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLS 281

Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G---G 123
             G   A     +  D+  LGK + GG+    A     ++M    P   G+    G    
Sbjct: 282 GGG---AQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNN 337

Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           N L       AL  I       +    G+ FR+ L      +  P+ 
Sbjct: 338 NILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQ 384

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
            +        + I   +VEP+   AG + P   +L  ++ L  +   L I DEV TG  L
Sbjct: 192 ALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL 251

Query: 68  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
           G  G   A  Y ++  DI++LGK + GG  P+ AV    EVM  L P   G  +  G   
Sbjct: 252 GLEG---AQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQ--GKVFNAGTFN 305

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
            +P+     +  L  + EE +   + +  +         L    +P  
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score = 93.3 bits (233), Expect = 3e-22
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 14/168 (8%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
            +   L    + + A +VEPI G  G V P  G+L+KV  L  +   L I DEV T    
Sbjct: 191 TLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF 250

Query: 68  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
              G   A     V PD+  LGK + GGL PI A     E+M  + P   G  Y  G   
Sbjct: 251 MYGG---AQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPL--GPAYQAGTMA 304

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           GNP +    +  L+V+ +E + E   ++G      +  + +   + + 
Sbjct: 305 GNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score = 92.5 bits (231), Expect = 6e-22
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
            V A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  +
Sbjct: 188 AVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRI 247

Query: 68  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
              G         V PD+  LGK + GGL P+ A     E+M  + P   G  Y  G   
Sbjct: 248 AYGG---VQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPA--GPMYQAGTLS 301

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           GNPLA    +  L+++ +    E   ++ +     L +          
Sbjct: 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAAC 349

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score = 91.8 bits (229), Expect = 9e-22
 Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
            V    +  P  +   +VEP+ G    + P   +L  +RALC ++  L I DEV TG  +
Sbjct: 189 SVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRV 248

Query: 68  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
              G   A  Y  V PD+  LGK + GG+ P+ A     EVM  L P   G  Y  G   
Sbjct: 249 ALAG---AQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPT--GPVYQAGTLS 302

Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
           GNP+A       L  I +  + E   ++ +   + LR     + +P+V
Sbjct: 303 GNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLV 350

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score = 89.1 bits (222), Expect = 9e-21
 Identities = 44/120 (36%), Positives = 56/120 (46%), Gaps = 17/120 (14%)

Query: 22  ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE 79
           I   +VEP+ G  G V P  G+L+ +R +  Q   L I DEV TG  +          Y 
Sbjct: 201 IACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNC---GQGYY 257

Query: 80  DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G---GNPLACKLAMTA 134
            V PD+  LGK + GGL P+ A     E+M  + P   G  Y  G   GNP    LAM A
Sbjct: 258 GVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPS--GPIYQAGTLSGNP----LAMAA 310

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 15/139 (10%)

Query: 11  QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
            +   LK     I A + EP+ G AG +VP + +LK +      Y VL IADEV TG  L
Sbjct: 188 GLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRL 246

Query: 68  GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
              G   A     ++PD+V LGK L GGL P +A     E+M  + P   G  Y  G   
Sbjct: 247 AFGG---ATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPL--GPVYQAGTLS 300

Query: 123 GNPLACKLAMTALDVILEE 141
           GNPLA    +  L+++ E 
Sbjct: 301 GNPLAMAAGLATLELLEEN 319

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 30/154 (19%)

Query: 41  DGY---LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDVRPDIVI--LGKAL- 92
           DG    L +++ +  Q+N   + D+   TG +G  G+      + V+P++++   GK   
Sbjct: 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG 239

Query: 93  -SGGLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEENMIENA 147
            SG      AVL    V   L+               P   +    +L VI  +      
Sbjct: 240 VSGA-----AVLCSSTVADYLL--QFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARR 292

Query: 148 YKMGE---IFRSELRS---RLSPD---IVPVVRG 172
            K+      FR+ ++     L+     I P++ G
Sbjct: 293 EKLAALITRFRAGVQDLPFTLADSCSAIQPLIVG 326

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 48/263 (18%), Positives = 78/263 (29%), Gaps = 64/263 (24%)

Query: 16  LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QY-NVLFIADEVQT-------G 66
            + +PN  +            +       +  R L S  Y N L +   VQ         
Sbjct: 207 YQIDPNWTS---RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 67  LG-RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY---- 121
           L  +   LL   ++ V  D +         L   S  L  DEV   L+            
Sbjct: 264 LSCKI--LLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 122 ---GGNPLACKLAMTALDVILEENMIEN-----AYKMGEIFRS--------ELRSR---L 162
                NP    L++ A  +       +N       K+  I  S        E R     L
Sbjct: 321 EVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 163 S--PDIVPVVRGKGLLNAIVLDKSIL-------EVYDVCIKMKDAGLVTKPISNNIIRLS 213
           S  P    +         I+L  S++       +V  V  K+    LV K    + I + 
Sbjct: 379 SVFPPSAHI-------PTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428

Query: 214 PALNITEQELREGL----DIIIN 232
           P++ +  +   E        I++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVD 451

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 22/181 (12%)

Query: 20  PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG------LGRTGKL 73
            NI A +       AG        LK+V  +  Q+ +  + D  +          R  K 
Sbjct: 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 241

Query: 74  LAIHYEDVRPDIVILGKALS-----GGLYPISAVLA--DDEVMGT-----LVPGTHGSTY 121
                ++V  D+     AL+       L  I  ++A  D+E + T      VP     TY
Sbjct: 242 KNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTY 301

Query: 122 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL 181
           GG        M A+   LEE   E            L  RL    +P+    G  +A+ +
Sbjct: 302 GGLA---GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTG-GHAVFV 357

Query: 182 D 182
           D
Sbjct: 358 D 358

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 6   PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
               + + A L ++P I    +  +  E   G + P    + +V AL  +Y   +I D +
Sbjct: 116 RPDVQAIDAILNADPTISHIAM--VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAM 169

Query: 64  QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
            +  G  G  + +    +  D +I    K + G  G   + A
Sbjct: 170 -SSFG--G--IPMDIAALHIDYLISSANKCIQGVPGFAFVIA 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.95
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.93
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.93
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.93
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.93
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.93
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.93
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.93
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.93
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.92
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.92
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.92
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.92
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.92
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.92
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.92
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.92
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.92
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.92
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.92
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.92
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.92
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.92
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.92
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.92
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.92
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.92
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.92
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.92
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.92
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.92
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.92
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.92
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.91
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.91
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.91
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.91
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.91
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.91
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.91
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.91
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.91
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.91
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.91
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.91
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.91
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.91
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.91
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.91
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.91
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.91
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.91
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.9
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.9
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.9
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.9
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.9
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.9
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.9
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.9
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.89
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.89
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.89
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.82
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.89
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.89
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.89
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.89
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.88
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.88
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.88
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.88
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.88
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.87
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.87
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.87
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.87
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.87
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.87
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.87
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.86
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.86
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.86
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.86
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.86
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.86
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.86
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.86
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.85
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.85
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.85
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.85
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.84
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.84
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.84
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.84
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.84
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.83
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.83
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.83
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.83
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.83
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.82
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.82
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.82
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.82
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.82
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.82
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.81
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.81
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.8
1svv_A	359	Threonine aldolase; structural genomics, structura	99.8
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.8
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.8
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.8
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.8
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.8
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.8
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.79
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.79
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.79
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.79
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.78
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.78
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.78
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.77
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.77
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.77
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.77
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.76
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.76
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.76
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.76
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.76
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.76
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.76
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.76
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.76
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.75
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.75
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.75
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.75
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.75
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.75
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.74
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.74
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.74
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.73
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.73
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.72
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.72
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.72
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.72
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.71
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.7
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.69
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.69
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.67
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.66
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.65
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.64
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.64
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.64
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.64
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.63
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.63
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.62
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.61
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.6
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.57
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.53
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.53
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.52
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.51
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.48
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.44
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.43
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.38
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.32
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.22
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.2
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.07
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.98

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=3.8e-39  Score=276.94  Aligned_cols=217  Identities=34%  Similarity=0.621  Sum_probs=197.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++|+.||+++++|+++|| +|
T Consensus       224 ~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg-~P  302 (456)
T 4atq_A          224 GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG-LP  302 (456)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTT-SS
T ss_pred             CCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCc-CC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCeEe
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPVVR  171 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~~~  171 (242)
                      +|.+++++++++.+.+..+++||++||+++++++++++.++++++.++.+++.+++++.| +++..       ..+..+.
T Consensus       303 ~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~~~v~~VR  381 (456)
T 4atq_A          303 LSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKL-RELAAELSAGGGSVVGDIR  381 (456)
T ss_dssp             CEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCC-----CEEEEE
T ss_pred             ceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHhcccccCCceEEee
Confidence            999999999999999999999999999999999999999999999999999999999988 55421       3456778


Q ss_pred             eeceeEEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.|.++.+++..+.      .....+.+.|+++|+++.+++  ++.|||.|++..|++++++++++|++++++.
T Consensus       382 G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          382 GRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999986542      346779999999999998754  4789999999999999999999999999863

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=7.8e-39  Score=275.97  Aligned_cols=219  Identities=28%  Similarity=0.530  Sum_probs=198.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+|
T Consensus       234 ~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~P  313 (473)
T 4e3q_A          234 ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFP  313 (473)
T ss_dssp             GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSC
T ss_pred             CCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988799


Q ss_pred             hheeEeChhhhhcc-------CCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          99 ISAVLADDEVMGTL-------VPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      +|.+++++++++.+       .+..+++||++||+++++++++++.++++++.++++++..+++++| +.+.. ..+..+
T Consensus       314 l~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~v~~v  392 (473)
T 4e3q_A          314 MGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL-KHIAERPNIGEY  392 (473)
T ss_dssp             CEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH-HHHTTSTTEEEE
T ss_pred             cccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHH-HHHhcCCCeeEE
Confidence            99999999988765       3457899999999999999999999999999999999999999999 66653 345678


Q ss_pred             eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++.|.++.+++..+.          .....+.+.++++|+++.+.+ +.+||+|++..|++++++++++|+++++++.+
T Consensus       393 RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          393 RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG-QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999985432          235679999999999999884 78999999999999999999999999988754

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=1.8e-37  Score=266.40  Aligned_cols=236  Identities=51%  Similarity=0.887  Sum_probs=205.0

Q ss_pred             cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .+..+|++|+++  +.+.++++++|++||+++++|.++++++++++|+++|++||++||+||+|+||+++|..++++.++
T Consensus       192 ~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~  271 (433)
T 1z7d_A          192 QFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN  271 (433)
T ss_dssp             CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred             CeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcC
Confidence            456789999999  445467899999999999999888999999999999999999999999999999888777777788


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +.||++++||++++|++|+|++++++++++.+.+..++.++++|+++++++.++++.++++++.++++++++++++.| +
T Consensus       272 ~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L-~  350 (433)
T 1z7d_A          272 VKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL-K  350 (433)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-H
T ss_pred             CCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-H
Confidence            899999999999988679999999999999988877888999999999999999998877788999999999999999 6


Q ss_pred             hc--CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         161 RL--SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       161 ~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+  +.......++.|.++++.++....+..++.+.|.++||++.+++.+.+|++|++.+|++++++++++|+++++++.
T Consensus       351 ~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          351 RELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD  430 (433)
T ss_dssp             HHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHH
Confidence            65  3223334567889999998753124778999999999999998789999999999999999999999999998764


Q ss_pred             h
Q psy6548         239 A  239 (242)
Q Consensus       239 ~  239 (242)
                      .
T Consensus       431 ~  431 (433)
T 1z7d_A          431 E  431 (433)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=4.1e-37  Score=264.63  Aligned_cols=233  Identities=58%  Similarity=0.981  Sum_probs=203.9

Q ss_pred             cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .+..+|++|+++  +.+.++++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||+++|..++++.++
T Consensus       203 ~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~  282 (439)
T 2oat_A          203 GFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN  282 (439)
T ss_dssp             TEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred             CeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhC
Confidence            456789999999  445457899999999999999889999999999999999999999999999999888877777888


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +.||++++||++++|++|+|++++++++++.+.+..++.++++|+++++++.++++.++++++.++++++++++++.| +
T Consensus       283 ~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L-~  361 (439)
T 2oat_A          283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNEL-M  361 (439)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-T
T ss_pred             CCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-H
Confidence            899999999999988679999999999999998877888999999999999999998877788999999999999999 7


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++.......++.|.+++++++... .+..++.+.|.++||.+.+.+++.+|+++++.+|++++++++++|++++++
T Consensus       362 ~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          362 KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             TSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            7642222345678899999987531 246789999999999999988899999999999999999999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=1.7e-37  Score=269.51  Aligned_cols=219  Identities=27%  Similarity=0.543  Sum_probs=195.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc-cCCCCCCEEEeeccccCCccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      +++++|++||+++++|.+++++++|++|+++|++||++||+||+|+|||++|..++.+ ++++.||++++||++++||+|
T Consensus       220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~p  299 (476)
T 3i5t_A          220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVP  299 (476)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSC
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcC
Confidence            6899999999999999999999999999999999999999999999999999877777 889999999999999999789


Q ss_pred             hheeEeChhhhhccCCC-------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548          99 ISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~  170 (242)
                      +|++++++++++.+.+.       .+++|+++|++++++++++++.++++++.++++++.+++++.| +.+.. ......
T Consensus       300 lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L-~~l~~~~~v~~v  378 (476)
T 3i5t_A          300 LGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAAL-ASLRDLPGVAET  378 (476)
T ss_dssp             CEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HTTTTSTTEEEE
T ss_pred             eEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhcCCCeEEE
Confidence            99999999999988763       5778999999999999999999888889999999999999999 66652 344567


Q ss_pred             eeeceeEEEEecCCch----------hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         171 RGKGLLNAIVLDKSIL----------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++.|.++++++..+..          ....+.+.|+++||++.+.+ +++|++|++.+|++++++++++|+++++++.++
T Consensus       379 ~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          379 RSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             EEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999998876410          36678999999999999976 999999999999999999999999999887553

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=1.8e-37  Score=268.98  Aligned_cols=217  Identities=29%  Similarity=0.512  Sum_probs=192.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.++|+++++++|+++|++||+++|+||+|+|||++|..++.+++++.||++++||++++|++|+
T Consensus       222 ~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~pl  301 (472)
T 3hmu_A          222 NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPI  301 (472)
T ss_dssp             GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCC
T ss_pred             CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcce
Confidence            68999999999999999999999999999999999999999999999999998777788899999999999999765899


Q ss_pred             heeEeChhhhhccCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhhcCC-CCCCeEeeece
Q psy6548         100 SAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELRSRLSP-DIVPVVRGKGL  175 (242)
Q Consensus       100 g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~~~~~~~~~  175 (242)
                      |++++++++++.+.+  ..+++||++|+++++++.++++.++++++.++++ ++.+++++.| +.+.. .....+++.|.
T Consensus       302 G~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L-~~l~~~~~v~~vr~~G~  380 (472)
T 3hmu_A          302 GGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKW-EALTDHPLVGEAKIVGM  380 (472)
T ss_dssp             EEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHH-HGGGGSTTEEEEEEETT
T ss_pred             EEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhcCCCeEEEEecCc
Confidence            999999999998843  3578899999999999999999888788999999 9999999999 77642 34456778899


Q ss_pred             eEEEEecCCc-----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         176 LNAIVLDKSI-----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       176 ~~~~~~~~~~-----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ++++++..+.           .....+.+.|+++||++.+++ +++|++|++.+|++++++++++|+++++++.
T Consensus       381 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~  453 (472)
T 3hmu_A          381 MASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ  453 (472)
T ss_dssp             EEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999987531           226789999999999999986 9999999999999999999999999988764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=4.1e-37  Score=263.41  Aligned_cols=228  Identities=20%  Similarity=0.294  Sum_probs=197.6

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ...+||||+++  +.+.  .+++++|++||+++++|.++|+++||++|+++|++||++||+||+++  |++|..++.+++
T Consensus       199 ~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~  276 (454)
T 4ao9_A          199 FLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKL  276 (454)
T ss_dssp             EEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHH
T ss_pred             cccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCccccchhcc
Confidence            46789999999  4443  46899999999999999999999999999999999999999999998  488988888999


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      |+.||+++++|+++|| +|+|.+.+++++++.+.+.    .+++||++||+++++++++|+.++++++.++++++.++++
T Consensus       277 gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~  355 (454)
T 4ao9_A          277 GIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALR  355 (454)
T ss_dssp             TCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence            9999999999999999 8999999999999988753    5788999999999999999999988889999999999999


Q ss_pred             HHHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      ++| +++.  ......+.+.|.++.+.+....            .....+...|+++||++.|.+    ++.++..+|++
T Consensus       356 ~~L-~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~----~~~~s~~~T~~  430 (454)
T 4ao9_A          356 ARL-NALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG----FVVLSLPLTDA  430 (454)
T ss_dssp             HHH-HHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC----EEECCTTCCHH
T ss_pred             HHH-HHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC----CEEEeCCCCHH
Confidence            999 5552  2467788999999999875431            223567888999999998753    34455779999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy6548         222 ELREGLDIIINTINTMAA  239 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~~  239 (242)
                      |||+++++|++++.++.+
T Consensus       431 dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          431 DIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             HHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999988643

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.5e-36  Score=257.53  Aligned_cols=231  Identities=30%  Similarity=0.534  Sum_probs=204.4

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+|++|+++ +...++++++|+++|+++++|.++|+++++++|+++|++||+++|+||+|+||++.|..+..+.+++
T Consensus       160 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~  239 (395)
T 3nx3_A          160 GVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI  239 (395)
T ss_dssp             CEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred             CcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC
Confidence            456788999999 6555678999999999999999999999999999999999999999999999998887777778888


Q ss_pred             CCCEEEeeccccCCccchheeEeChhh-hhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      .+|++++||++++| +|+|++++++++ ++.+.+..++.+++.++++++++.++++.++.+++.++++++.+++++.| +
T Consensus       240 ~~d~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l-~  317 (395)
T 3nx3_A          240 LPDIMTSAKALGCG-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL-D  317 (395)
T ss_dssp             CCSEEEECGGGTTT-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-H
T ss_pred             CCCEEEecccccCC-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-H
Confidence            99999999999999 899999999998 88898877888999999999999999998877788899999999999999 5


Q ss_pred             hcC--CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         161 RLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       161 ~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+.  .......++.|.++++.++.. .+..++.+.|.++||.+++++++++|++|++.+|++++++++++|++++++
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          318 ELINEFDFCKKRKGLGFMQGLSLDKS-VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             HHHHHCTTEEEEEEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCeEEEEeEEEEEEEEeCCc-chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            432  123345567889999999875 468889999999999999998999999999999999999999999998864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=4.3e-37  Score=265.64  Aligned_cols=227  Identities=29%  Similarity=0.500  Sum_probs=198.4

Q ss_pred             CChhh--hcCC--CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548          10 KQVPA--KLKS--NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus        10 ~d~~~--~~~~--~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      +|+++  +.+.  .+++++|++|| +++++|.++|+++++++|+++|++||+++|+||+|+||+++|..++.+.+++.||
T Consensus       218 ~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd  297 (457)
T 3tfu_A          218 AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD  297 (457)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce
Confidence            56776  3343  26899999999 9999999999999999999999999999999999999999998777788899999


Q ss_pred             EEEeeccccCCccchheeEeChhhhhccC---CC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          85 IVILGKALSGGLYPISAVLADDEVMGTLV---PG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        85 ~~~~sK~~~~g~~~~g~~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      +++|||+++||++|+|++++++++++.+.   ..  .++.++++|+++++++.++++.++++++.++++++++++++.| 
T Consensus       298 iit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L-  376 (457)
T 3tfu_A          298 IMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL-  376 (457)
T ss_dssp             EEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-
T ss_pred             EEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-
Confidence            99999999988669999999999988883   33  6788999999999999999998888889999999999999999 


Q ss_pred             hhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         160 SRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       160 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.. ......++.|.++++++... .+..++.+.|+++||++.+. ++.+|++|++.+|+|++++++++|+++++++.
T Consensus       377 ~~l~~~~~v~~vr~~G~~~~i~l~~~-~~~~~~~~~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          377 DTARALPAVTDVRVCGAIGVIECDRP-VDLAVATPAALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             GGGGGSTTEEEEEECSSCEEEEESSC-CCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCCeeeeecCCeEEEEEECCc-ccHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            66642 23345677899999999876 56789999999999999987 47999999999999999999999999998764


Q ss_pred             h
Q psy6548         239 A  239 (242)
Q Consensus       239 ~  239 (242)
                      .
T Consensus       455 ~  455 (457)
T 3tfu_A          455 S  455 (457)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=1.2e-36  Score=263.17  Aligned_cols=220  Identities=30%  Similarity=0.521  Sum_probs=193.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||+++|..+..+++++.||+++|||++++|++|+
T Consensus       220 ~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~l  299 (460)
T 3gju_A          220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPL  299 (460)
T ss_dssp             GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCC
T ss_pred             CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCe
Confidence            68999999999999999999999999999999999999999999999999987777778899999999999999886799


Q ss_pred             heeEeChhhhhcc-------CCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548         100 SAVLADDEVMGTL-------VPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR  171 (242)
Q Consensus       100 g~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~  171 (242)
                      |++++++++++.+       ....++.+++.|+++++++.++++.++.+++.++++++.+++++.|.+.+.. ......+
T Consensus       300 g~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  379 (460)
T 3gju_A          300 SGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR  379 (460)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence            9999999999888       4456888999999999999999998887888899999999999999444442 3445677


Q ss_pred             eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.|.++++++..+.          ....++.+.|+++||++.+.+ .+++|++|++.+|++++++++++|+++++++.+
T Consensus       380 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          380 GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            88999999887541          126689999999999999875 489999999999999999999999999988754

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=1.4e-36  Score=262.11  Aligned_cols=230  Identities=32%  Similarity=0.563  Sum_probs=196.9

Q ss_pred             cccCCCC---------hhh--hcCC---CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc
Q psy6548           5 FPVKSKQ---------VPA--KLKS---NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR   69 (242)
Q Consensus         5 ~~~~~~d---------~~~--~~~~---~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~   69 (242)
                      +.+||||         +++  +.+.   .+++++|++||+ +| +|.++|+++++++|+++|++||+++|+||+|+||++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~  263 (452)
T 3n5m_A          185 YRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR  263 (452)
T ss_dssp             TTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             ccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence            4567788         777  3443   368999999999 89 999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccH
Q psy6548          70 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENM  143 (242)
Q Consensus        70 ~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~  143 (242)
                      +|..++.+.+++.||+++|||++++||+|+|++++++++++.+.+      ..++.+++.|+++++++.++++.++.+++
T Consensus       264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~  343 (452)
T 3n5m_A          264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENL  343 (452)
T ss_dssp             TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred             ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            998777888899999999999999887899999999999998853      24678999999999999999998887888


Q ss_pred             HHHHHHHHHHHHHHHHhhc-CC-CCCCeEeeeceeEEEEecCCc--------hhHHHHHHHHHHCCceeccCC------C
Q psy6548         144 IENAYKMGEIFRSELRSRL-SP-DIVPVVRGKGLLNAIVLDKSI--------LEVYDVCIKMKDAGLVTKPIS------N  207 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l-~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~------~  207 (242)
                      .++++++++++++.| +++ .. ......++.|.++++++....        ....++++.|+++||++.+.+      +
T Consensus       344 ~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~  422 (452)
T 3n5m_A          344 IERSAQMGSLLLEQL-KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYN  422 (452)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCC
Confidence            999999999999999 554 32 334556788888888874321        124678999999999999875      6


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++|++|++.+|++++++++++|++++++
T Consensus       423 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          423 NILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999998764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=2e-36  Score=261.27  Aligned_cols=222  Identities=37%  Similarity=0.600  Sum_probs=195.2

Q ss_pred             CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCc
Q psy6548          17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL   96 (242)
Q Consensus        17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~   96 (242)
                      +..+++++|++||+++++|.++++++++++|+++|++||++||+||+|+||+++|..++.+++++.||+++|||++++| 
T Consensus       221 i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G-  299 (453)
T 4ffc_A          221 IGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG-  299 (453)
T ss_dssp             TCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-
T ss_pred             cCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCC-
Confidence            3456899999999999999999999999999999999999999999999999998877778889999999999999999 


Q ss_pred             cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeec
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKG  174 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~  174 (242)
                      +|+||+++++++++.+.+..++.++++|+++++++.++++.++.+++.++++++++++++.| +++.  ......+++.|
T Consensus       300 ~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~g  378 (453)
T 4ffc_A          300 MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRL-SALAEEVDIIGEVRGRG  378 (453)
T ss_dssp             SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCSSEEEEEEET
T ss_pred             cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHhhCCCeEEEEeec
Confidence            99999999999999999888899999999999999999998877888999999999999999 5442  12345567889


Q ss_pred             eeEEEEecC------CchhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         175 LLNAIVLDK------SILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       175 ~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      .++++++..      +......+.+.|+++||++.+++.  +.+|+++++.++++++++++++|+++++++.++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (453)
T 4ffc_A          379 AMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASH  452 (453)
T ss_dssp             TEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999998843      114577899999999999998754  899999999999999999999999999987654

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=1.3e-36  Score=262.03  Aligned_cols=228  Identities=33%  Similarity=0.589  Sum_probs=198.0

Q ss_pred             Chhh--hcCC--CCCEEEEEEcccc-cCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548          11 QVPA--KLKS--NPNICAFMVEPIQ-GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus        11 d~~~--~~~~--~~~~~~i~~e~~~-~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      |+++  +.+.  .+++++|++||++ +++|.++++++++++|+++|++||++||+||+|+||+++|..++.+.+++.||+
T Consensus       196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di  275 (448)
T 3dod_A          196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL  275 (448)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCE
Confidence            4666  3343  4689999999998 999999999999999999999999999999999999999887777888999999


Q ss_pred             EEeeccccCCccchheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          86 VILGKALSGGLYPISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        86 ~~~sK~~~~g~~~~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +++||++++|++|+|++++++++++.+.+       ..++++++.++++++++.++++.++.+++.++++++.+++++.|
T Consensus       276 ~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l  355 (448)
T 3dod_A          276 MAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLL  355 (448)
T ss_dssp             EEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            99999999993499999999999999876       66788999999999999999998887888999999999999999


Q ss_pred             HhhcCC-CCCCeEeeeceeEEEEecCCch----------hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHH
Q psy6548         159 RSRLSP-DIVPVVRGKGLLNAIVLDKSIL----------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       159 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                       +++.. ......++.|.++++.+..+..          ...++++.|+++||++.|.+ +++|++|++.+|++++++++
T Consensus       356 -~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l  433 (448)
T 3dod_A          356 -QDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMV  433 (448)
T ss_dssp             -HHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHH
T ss_pred             -HHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHH
Confidence             44543 3344567789999999876411          14789999999999999985 89999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy6548         228 DIIINTINTMAAK  240 (242)
Q Consensus       228 ~~l~~~l~~~~~~  240 (242)
                      ++|+++++++...
T Consensus       434 ~~l~~~l~~~~~~  446 (448)
T 3dod_A          434 AIMKQAIHEVTSL  446 (448)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=9.3e-36  Score=254.82  Aligned_cols=233  Identities=34%  Similarity=0.587  Sum_probs=196.7

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|++|+++ +...++++++|++||+++++|.++++.+++++|+++|++||+++|+||+|+||+++|..+.++.+++.
T Consensus       183 ~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~  262 (420)
T 2pb2_A          183 IIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVT  262 (420)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred             eEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCC
Confidence            56678899998 54445689999999999988877899999999999999999999999999999888876655667888


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|++++||++++| +|+|++++++++++.+.+..++.+++.|+++++++.++++.++.+++.++++++++++++.| +.+
T Consensus       263 ~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L-~~~  340 (420)
T 2pb2_A          263 PDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHL-QAI  340 (420)
T ss_dssp             CSEEEECGGGGTT-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             CCeEEecccccCC-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999 89999999999988888766778889999999999999998876678899999999999999 554


Q ss_pred             C--CCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         163 S--PDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       163 ~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .  .......++.|.+++++++... .+..++.+.|.++||.+.+++++.+|++|++..+++++++++++|+++++++.
T Consensus       341 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~~  419 (420)
T 2pb2_A          341 DEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV  419 (420)
T ss_dssp             HHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            2  1223345677899999887531 14788999999999999998889999999999999999999999999988754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=3.4e-36  Score=260.23  Aligned_cols=219  Identities=29%  Similarity=0.483  Sum_probs=192.1

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||+++|..++.+++++.||+++|||++++|++|+
T Consensus       218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~l  297 (459)
T 4a6r_A          218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPI  297 (459)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCC
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCc
Confidence            68999999999999999999999999999999999999999999999999997777778899999999999999765899


Q ss_pred             heeEeChhhhhccC---CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhhcCC-CCCCeEeeec
Q psy6548         100 SAVLADDEVMGTLV---PGTHGSTYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELRSRLSP-DIVPVVRGKG  174 (242)
Q Consensus       100 g~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~~~~~~~~  174 (242)
                      |++++++++++.+.   +..++.+|+.|+++++++.++++.++.+++.++++ ++.+++++.|.+.+.. ......++.|
T Consensus       298 g~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g  377 (459)
T 4a6r_A          298 GAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVG  377 (459)
T ss_dssp             EEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEET
T ss_pred             cceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence            99999999998886   55577899999999999999999888788889999 8999999888445542 3445677889


Q ss_pred             eeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         175 LLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       175 ~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .++++++..+.          .....+.+.|+++||++.+++ +++|++|++.+|++++++++++|+++++++.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          378 MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999887531          126789999999999999986 89999999999999999999999999988653

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=2.1e-35  Score=254.79  Aligned_cols=216  Identities=37%  Similarity=0.672  Sum_probs=192.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++++++|+++|+++|++||++||+||+|+||+++|..++.+++++.||+++|||++++| +|
T Consensus       225 ~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~  303 (451)
T 3oks_A          225 ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGG-LP  303 (451)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT-SS
T ss_pred             CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCC-cc
Confidence            46899999999999999999999999999999999999999999999999998877778889999999999999999 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~  176 (242)
                      +||+++++++++.+.+..++.++++|+++++++.++++.++++++.++++++++++++.| +++.  ......+++.|.+
T Consensus       304 iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~G~~  382 (451)
T 3oks_A          304 LSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRL-GRLQAEDDRIGDVRGRGAM  382 (451)
T ss_dssp             CEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCTTEEEEEEETTE
T ss_pred             eEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHhhCCCeEEEEEeeEE
Confidence            999999999999999888899999999999999999998877788999999999999999 5442  1234566788999


Q ss_pred             EEEEecC------CchhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDK------SILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       177 ~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++.+..      .......+.+.|+++||++.+++.  +.+|++|++.++++++++++++|++++++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          383 IAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             EEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9998843      114577899999999999998754  89999999999999999999999998864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.7e-35  Score=254.08  Aligned_cols=233  Identities=23%  Similarity=0.315  Sum_probs=199.3

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      .++.+||||+++  +.+.  .+++++|++||+++++|.++|+++++++|+++|++||++||+||+|+|| +.|..++.+.
T Consensus       180 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~  258 (434)
T 3l44_A          180 EVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL  258 (434)
T ss_dssp             TEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHH
T ss_pred             ceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHH
Confidence            456789999998  4444  2689999999999999999999999999999999999999999999999 8887666677


Q ss_pred             CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      +++.||++++||++++| +|+|++++++++++.+.+   ..++.+++.|+++++++.++++.++++++.+++++++++++
T Consensus       259 ~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~  337 (434)
T 3l44_A          259 LGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLE  337 (434)
T ss_dssp             HTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             cCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            88999999999999999 999999999999998876   34678899999999999999998877788999999999999


Q ss_pred             HHHHhhcC--CCCCCeEeeeceeEEEEecCC------------chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLS--PDIVPVVRGKGLLNAIVLDKS------------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      +.| +++.  .......++.|.++++.+...            .....++.+.|+++||++.+++.+.+|++  +.+|++
T Consensus       338 ~~L-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e  414 (434)
T 3l44_A          338 KGI-LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEHTKE  414 (434)
T ss_dssp             HHH-HHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTCCHH
T ss_pred             HHH-HHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--cccCHH
Confidence            999 5542  123445677889999988432            12357789999999999999887888986  789999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy6548         222 ELREGLDIIINTINTMAAK  240 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++++++++|+++++++.++
T Consensus       415 ~i~~~l~~l~~~l~~~~~~  433 (434)
T 3l44_A          415 DIEYTIEAVGRAFAALADN  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987653

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=4.7e-35  Score=251.61  Aligned_cols=231  Identities=29%  Similarity=0.548  Sum_probs=199.6

Q ss_pred             ccccCCC----------Chhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC
Q psy6548           4 QFPVKSK----------QVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG   68 (242)
Q Consensus         4 ~~~~~~~----------d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~   68 (242)
                      +..+|++          |+++  +.+.   ++++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+||+
T Consensus       169 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g  248 (439)
T 3dxv_A          169 PYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLA  248 (439)
T ss_dssp             CCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             cEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            3566776          5777  4442   67899999999999999999999999999999999999999999999998


Q ss_pred             ccCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Q psy6548          69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY  148 (242)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~  148 (242)
                      +.|..+..+.+++.+|++++||++++| +|+||+++++++++.+.+..+..++ .++++++++.++++.++.+++.++++
T Consensus       249 ~~g~~~~~~~~~~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~  326 (439)
T 3dxv_A          249 RSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAE  326 (439)
T ss_dssp             TTSSSSGGGGTTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             cCchhhHHHhcCCCCCEEEEcchhcCC-cceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            888767778888999999999999999 7999999999999999887778899 99999999999999887788899999


Q ss_pred             HHHHHHHHHHHhhcC--CCCCCeEeeeceeEEEEec--------CCchhHHHHHHHHHHCCceeccCCC--CEEEEeccC
Q psy6548         149 KMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLD--------KSILEVYDVCIKMKDAGLVTKPISN--NIIRLSPAL  216 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~  216 (242)
                      ++++++++.| +++.  .......++.|.++++++.        .. .+..++.+.|+++||.+.+++.  +++|+++++
T Consensus       327 ~~~~~~~~~l-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~  404 (439)
T 3dxv_A          327 RKGRLLRDGL-SELAKRHPLIGDIRGRGLACGMELVCDRQSREPAR-AETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPL  404 (439)
T ss_dssp             HHHHHHHHHH-HHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECH-HHHHHHHHHHHHHTEECEEESTTSCEEEECCCT
T ss_pred             HHHHHHHHHH-HHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCH-HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCC
Confidence            9999999999 5542  1234456778889998873        32 5678899999999999998754  899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHh
Q psy6548         217 NITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .++++++++++++|+++++++.
T Consensus       405 ~~t~e~i~~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          405 TITETDIHKALDLLDRAFSELS  426 (439)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.9e-34  Score=244.16  Aligned_cols=227  Identities=43%  Similarity=0.790  Sum_probs=199.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++++|+++ +...++++++|++++++|++|.+.++++++++|+++|++||+++|+||+|++|++.|..+....++..
T Consensus       164 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  243 (392)
T 3ruy_A          164 IIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT  243 (392)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             CeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCC
Confidence            55688999998 55445799999999999999999989999999999999999999999999999888876666777888


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|++++||+++||++|+||+++++++++.+.+...+.+++.++++++++.++++.+..+++.++++++++++++.| +++
T Consensus       244 ~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~  322 (392)
T 3ruy_A          244 PDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL-KEI  322 (392)
T ss_dssp             CSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTC
T ss_pred             CCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHh
Confidence            9999999999988789999999999999998887888999999999999999998877778899999999999999 776


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.......++.+.++++.++.   +..++.+.|.++||.+.+++.+++|+++++.++++++++++++|++++
T Consensus       323 ~~~~~~~~~~~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          323 DNPMITEVRGKGLFIGIELNE---PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CCTTEEEEEEETTEEEEEESS---CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEeeeeEEEEEEcc---hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            533344456678888888765   467899999999999999988999999999999999999999998875

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=4.2e-35  Score=251.27  Aligned_cols=217  Identities=33%  Similarity=0.571  Sum_probs=185.7

Q ss_pred             CCEEEEEEccccc-CCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEEeeccccCCcc
Q psy6548          20 PNICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVILGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~sK~~~~g~~   97 (242)
                      +++++|++||+++ ++|.++++++++++|+++|++||+++|+||+|+||++.|..++.+.+ ++.+|+++|||++++||+
T Consensus       189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~  268 (430)
T 3i4j_A          189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYA  268 (430)
T ss_dssp             GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSS
T ss_pred             CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCcc
Confidence            7899999999999 99999999999999999999999999999999999998887777888 899999999999999988


Q ss_pred             chheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEe
Q psy6548          98 PISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVR  171 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~  171 (242)
                      |+||+++++++++.+.+.    .++.+++.|+++++++.++++.++++++.++++++++++++.| +++.  .......+
T Consensus       269 r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~  347 (430)
T 3i4j_A          269 PLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGL-QALQARFPQMMQVR  347 (430)
T ss_dssp             CCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCTTEEEEE
T ss_pred             ccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEE
Confidence            999999999998888753    5778899999999999999998877888999999999999999 5442  12344567


Q ss_pred             eeceeEEEEecCC--------chhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKS--------ILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       172 ~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +.|.++++++.+.        .....++.+.|+++||++.++       +++++|+++++.++++++++++++|++++++
T Consensus       348 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          348 GTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             EETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            7889999988632        012467999999999999986       4678999999999999999999999999987


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      +
T Consensus       428 ~  428 (430)
T 3i4j_A          428 V  428 (430)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=1.7e-34  Score=247.61  Aligned_cols=224  Identities=29%  Similarity=0.483  Sum_probs=188.0

Q ss_pred             hhh--hcCCC---CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          12 VPA--KLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        12 ~~~--~~~~~---~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      +++  +.+.+   +++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||++.|..+.++.+++.+|++
T Consensus       189 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~  268 (433)
T 1zod_A          189 LDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL  268 (433)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE
Confidence            666  33432   6899999999999999889999999999999999999999999999998887755656678889999


Q ss_pred             EeeccccCCccchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-
Q psy6548          87 ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-  163 (242)
Q Consensus        87 ~~sK~~~~g~~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-  163 (242)
                      ++||+|++| +|+||+++++++++.+.+.  .++.+++.|+++++++.++++.++++++.++++++++++++.| +.+. 
T Consensus       269 s~sK~~~~G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l-~~l~~  346 (433)
T 1zod_A          269 TLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGL-LDLME  346 (433)
T ss_dssp             EECHHHHTT-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             EecccccCC-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHH
Confidence            999999999 9999999999998877653  2447888999999999999998877788899999999999999 6552 


Q ss_pred             -CCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCceeccCC--C--CEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         164 -PDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLVTKPIS--N--NIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~--~--~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                       .......++.|.+++++++..       .....++.+.|+++||.+.+++  .  +++|+++++.++++++++++++|+
T Consensus       347 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~  426 (433)
T 1zod_A          347 RFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG  426 (433)
T ss_dssp             HCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence             122334567788999887642       1246789999999999998864  2  899999999999999999999999


Q ss_pred             HHHHHH
Q psy6548         232 NTINTM  237 (242)
Q Consensus       232 ~~l~~~  237 (242)
                      ++++++
T Consensus       427 ~~l~~~  432 (433)
T 1zod_A          427 QAIERA  432 (433)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=1.2e-33  Score=240.04  Aligned_cols=236  Identities=35%  Similarity=0.589  Sum_probs=201.9

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+|++|+++ +...++++++|+++|+++++|..+++.+++++|+++|++||+++|+||+|+||++.|..+....++.
T Consensus       164 ~~~~~~~~d~~~l~~~l~~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  243 (406)
T 4adb_A          164 DIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV  243 (406)
T ss_dssp             SEEEECTTCHHHHHTTCSTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred             CceEeCCCcHHHHHHHhcCCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC
Confidence            345678899999 5555678999999988777776667899999999999999999999999999988887666666788


Q ss_pred             CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      .+|+++|||++++| +|+||+++++++++.+.+..++.+++.++++++++.++++.++.+++.++++++++++++.| +.
T Consensus       244 ~~d~~t~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~  321 (406)
T 4adb_A          244 TPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL-NT  321 (406)
T ss_dssp             CCSEEEECGGGGTT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCEEEechhhcCC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HH
Confidence            89999999999999 89999999999999998877888999999999999999998766778899999999999999 55


Q ss_pred             cCC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         162 LSP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       162 l~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +..  .......+.+.++++.++... .+..++.+.|.++||.+.+++.+++|++++..++++++++++++|+++++++.
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  401 (406)
T 4adb_A          322 INHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFV  401 (406)
T ss_dssp             HHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            431  233345667889999988741 25788999999999999999889999999999999999999999999999876


Q ss_pred             hh
Q psy6548         239 AK  240 (242)
Q Consensus       239 ~~  240 (242)
                      ++
T Consensus       402 ~~  403 (406)
T 4adb_A          402 SR  403 (406)
T ss_dssp             C-
T ss_pred             hc
Confidence            53

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=7.8e-34  Score=242.77  Aligned_cols=208  Identities=36%  Similarity=0.664  Sum_probs=175.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|+++|+++++|.++++++++++|+++|++||+++|+||+|++|++.|..+..+.+++.+|+++|||++++|++|+
T Consensus       211 ~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~ri  290 (419)
T 2eo5_A          211 EEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPI  290 (419)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCC
T ss_pred             CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccce
Confidence            57899999999999998899999999999999999999999999999988876555666788899999999999887899


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI  179 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~  179 (242)
                      ||++++++++ .+ ...+..+++.|+++++++.++++.+++  +.++++++++++++.| +.+    ....++.|.++++
T Consensus       291 G~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L-~~~----~~~~~~~g~~~~i  361 (419)
T 2eo5_A          291 GATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEEL-QGL----ADDVRGIGLAWGL  361 (419)
T ss_dssp             EEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-TTS----SSEEEEETTEEEE
T ss_pred             EEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHh----hhheEeeeEEEEE
Confidence            9999998887 66 445677899999999999999987654  7888999999999999 655    3455778899999


Q ss_pred             EecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         180 VLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++........ +.+.|.++||.+.+++.+++|+++++.+|++++++++++|+++++++
T Consensus       362 ~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          362 EYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ECSCHHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            8843212356 99999999999999878899999999999999999999999988764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=7.5e-34  Score=243.48  Aligned_cols=228  Identities=23%  Similarity=0.378  Sum_probs=194.1

Q ss_pred             ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||||+++  +.+.  .+++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|| ++|..+..+.+
T Consensus       179 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~  257 (429)
T 4e77_A          179 TLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYY  257 (429)
T ss_dssp             EEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHT
T ss_pred             eeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhc
Confidence            45678999998  4443  3689999999999999999999999999999999999999999999999 88876777888


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ++.||++++||++++| +|+|++++++++++.+.+.   .++++++.|+++++++.++++.++.+++.++++++++++++
T Consensus       258 ~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~  336 (429)
T 4e77_A          258 HVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLAT  336 (429)
T ss_dssp             TCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeecccccCC-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999999999 8999999999999988764   46788899999999999999988777889999999999999


Q ss_pred             HHHhhc-C-CCCCCeEeeeceeEEEEecCCc-------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         157 ELRSRL-S-PDIVPVVRGKGLLNAIVLDKSI-------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       157 ~l~~~l-~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      .| +++ . .......++.|.++++.++...             ....++.+.|+++||++.+++...+|++  +.+|++
T Consensus       337 ~L-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~e  413 (429)
T 4e77_A          337 GL-RHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMS--LAHSNE  413 (429)
T ss_dssp             HH-HHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEECC--TTCCHH
T ss_pred             HH-HHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEEEe--ccCCHH
Confidence            99 544 2 1345567788999999987641             2347899999999999999877766654  889999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINT  236 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~  236 (242)
                      ++++++++|++++++
T Consensus       414 ~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          414 DIQKTVNAARRCFAK  428 (429)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=7.2e-34  Score=243.40  Aligned_cols=228  Identities=22%  Similarity=0.334  Sum_probs=194.1

Q ss_pred             ccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||||+++  +.+.+  +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|| +.|..+..+.+
T Consensus       178 ~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~  256 (427)
T 3fq8_A          178 TLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKF  256 (427)
T ss_dssp             EEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHT
T ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhc
Confidence            56788999998  44443  489999999999999999999999999999999999999999999999 77776666788


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ++.||++++||++++| +|+|++++++++++.+.+.   .++.+++.|+++++++.++++.++++++.++++++++++++
T Consensus       257 ~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~  335 (427)
T 3fq8_A          257 GVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSD  335 (427)
T ss_dssp             TCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             CCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8999999999999999 8999999999999988763   46778899999999999999988777889999999999999


Q ss_pred             HHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         157 ELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       157 ~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      .| +++.  .......++.|.++++.+....            ....++.+.|.++||++.+++..  |+++++.+|+++
T Consensus       336 ~l-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~--r~~~~~~~t~e~  412 (427)
T 3fq8_A          336 GL-LAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE--AGFTSLAHTEED  412 (427)
T ss_dssp             HH-HHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS--CEECCTTCCHHH
T ss_pred             HH-HHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCC--CEEeeCcCCHHH
Confidence            99 5442  1344566788999999886531            12567999999999999998765  445568999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINT  236 (242)
Q Consensus       223 i~~~~~~l~~~l~~  236 (242)
                      +++++++|++++++
T Consensus       413 i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          413 IDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.9e-33  Score=242.47  Aligned_cols=212  Identities=31%  Similarity=0.496  Sum_probs=183.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      ++++++|++||++|++|.++++++++++|+++|++||+++|+||+|+||+++|..+.++.+++.+|++++||++     |
T Consensus       229 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~  303 (449)
T 2cjg_A          229 PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----Q  303 (449)
T ss_dssp             TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----S
T ss_pred             CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----c
Confidence            46899999999999999899999999999999999999999999999999988766666778899999999998     5


Q ss_pred             hheeEeChhhhhcc-----CCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCC-CCeE
Q psy6548          99 ISAVLADDEVMGTL-----VPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDI-VPVV  170 (242)
Q Consensus        99 ~g~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~-~~~~  170 (242)
                      +|++++++++++.+     .+..++++++.|+++++++.++++.++++++.++++++++++++.| +++.  ... ....
T Consensus       304 iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L-~~l~~~~~~~~~~~  382 (449)
T 2cjg_A          304 VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDP  382 (449)
T ss_dssp             SEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HHHHHHSTTTSEEE
T ss_pred             EEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhhCCCceeeE
Confidence            89999999988863     3345678899999999999999998877778899999999999999 6552  122 3456


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++.|.+++++++.. .+..++.+.|.++||.+.+++.+++|++|++.+|++++++++++|+++++++
T Consensus       383 ~~~g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          383 RGRGLMCAFSLPTT-ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             EEETTEEEEECSSH-HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeccEEEEEEECCh-HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            67888999988764 4577899999999999999888999999999999999999999999998764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=2.4e-34  Score=246.66  Aligned_cols=229  Identities=23%  Similarity=0.345  Sum_probs=194.9

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      .++.+||||+++  +.+.  .+++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|| +.|..+..+.
T Consensus       178 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~  256 (429)
T 3k28_A          178 NTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY  256 (429)
T ss_dssp             TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHH
T ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHH
Confidence            456788999998  4444  3689999999999999999999999999999999999999999999999 8887666677


Q ss_pred             CCCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      +++.+|++++||++++| +|+|++++++++++.+.+.   .++++++.|+++++++.++++.++ +++.+++++++++++
T Consensus       257 ~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~  334 (429)
T 3k28_A          257 YGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLE  334 (429)
T ss_dssp             HTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred             hCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            88999999999999999 9999999999999988653   367789999999999999998765 668889999999999


Q ss_pred             HHHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      +.| +++.  .......++.|.++++.+....            ....++.+.|+++||++.+++.+.+|++  +.+|++
T Consensus       335 ~~L-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e  411 (429)
T 3k28_A          335 AGL-RKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLS--TVHSDA  411 (429)
T ss_dssp             HHH-HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCC--TTCCHH
T ss_pred             HHH-HHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEE--CCCCHH
Confidence            999 5542  2345567788999999875421            2357889999999999999888888886  789999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      ++++++++|+++++++
T Consensus       412 ~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          412 DIEATIAAAEIAMSKL  427 (429)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=2.1e-33  Score=241.07  Aligned_cols=230  Identities=21%  Similarity=0.350  Sum_probs=192.9

Q ss_pred             ccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||+|+++  +.+.+  +++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|| +.|..+..+.+
T Consensus       182 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~  260 (434)
T 2epj_A          182 TLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYF  260 (434)
T ss_dssp             EEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHH
T ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHh
Confidence            56788999998  44443  589999999999999988999999999999999999999999999988 66665566677


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ++.||++++||++++| +|+|++++++++++.+.+.   .++++|+.|+++++++.++++.++++++.++++++++++++
T Consensus       261 ~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~  339 (434)
T 2epj_A          261 NIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEE  339 (434)
T ss_dssp             TCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeecchhcCC-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8889999999999999 8999999999999988762   35678899999999999999988777889999999999999


Q ss_pred             HHHhhcC--CCCCCeEeeeceeEEEEecCC------------chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         157 ELRSRLS--PDIVPVVRGKGLLNAIVLDKS------------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       157 ~l~~~l~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      .| +.+.  .......++.|.++++.++..            .....++.+.|+++||.+.+++...+|+  ++.+|+++
T Consensus       340 ~L-~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~  416 (434)
T 2epj_A          340 AA-SEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFT--GLPHQGEA  416 (434)
T ss_dssp             HH-HHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEEC--CTTCSHHH
T ss_pred             HH-HHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcEEE--eccCCHHH
Confidence            99 5542  123334567889999998751            1346789999999999999986665554  48899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy6548         223 LREGLDIIINTINTMA  238 (242)
Q Consensus       223 i~~~~~~l~~~l~~~~  238 (242)
                      +++++++|+++++++.
T Consensus       417 i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          417 LEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=1.7e-33  Score=241.28  Aligned_cols=226  Identities=31%  Similarity=0.528  Sum_probs=189.2

Q ss_pred             CChhh--hcCCC--CCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548          10 KQVPA--KLKSN--PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus        10 ~d~~~--~~~~~--~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      +|+++  +.+.+  +++++|+++|+ +|++|.++|+++++++|+++|++||+++|+||+|+||++.|..+..+.+++.+|
T Consensus       189 ~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d  268 (429)
T 1s0a_A          189 RDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD  268 (429)
T ss_dssp             GGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCC
Confidence            45666  33432  68999999999 999999999999999999999999999999999999988776555666778899


Q ss_pred             EEEeeccccCCccchheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          85 IVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        85 ~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      ++++||++++|++|+||+++++++++.+.+.     .+..+++.|+++++++.++++.++++++.++++++++++++.| 
T Consensus       269 ~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L-  347 (429)
T 1s0a_A          269 ILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL-  347 (429)
T ss_dssp             EEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred             EEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-
Confidence            9999999998867999999999988877653     2556888999999999999998877778899999999999999 


Q ss_pred             hhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         160 SRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       160 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +.+.. ......++.|.+++++++.. .+..++.+.|.++||.+.+. ++++|+++++.+|++++++++++|+++++++.
T Consensus       348 ~~l~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~  425 (429)
T 1s0a_A          348 APARDAEMVADVRVLGAIGVVETTHP-VNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQDET  425 (429)
T ss_dssp             GGGGGCTTEEEEEEETTEEEEEESSC-BCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred             HHHhcCCCEEEEEEeeEEEEEEECCc-ccHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            66531 11223456788899998764 45778999999999999987 47999999999999999999999999876543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=4.1e-33  Score=236.44  Aligned_cols=229  Identities=34%  Similarity=0.619  Sum_probs=192.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|++|+++ +...++++++|++++++|++|.++++.+++++|+++|++||+++|+||+|+|+++.|.......++..
T Consensus       165 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  244 (397)
T 2ord_A          165 FEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVV  244 (397)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred             eeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCC
Confidence            66788999998 54445689999999999999976888899999999999999999999999988777765444555667


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|++++||++++| +|+||++++++++ .+.+.....+++.++++++++.++++.+..+++.++++++++++++.| +.+
T Consensus       245 ~d~~s~sK~~~~G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~  321 (397)
T 2ord_A          245 PDVLTTAKGLGGG-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL-QEM  321 (397)
T ss_dssp             CSEEEECGGGGTT-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH-HHH
T ss_pred             CCeeeeccccCCC-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHH
Confidence            8999999999999 8999999998887 776555677888899999999999988776678899999999999999 555


Q ss_pred             C--CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         163 S--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       163 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .  .......++.|.++++.++.. .+..++.+.|.++||.+.+++++++|+++++..+++++++++++|++++++
T Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          322 KEEYDVVADVRGMGLMIGIQFREE-VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             HHHCTTEEEEEEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCceEEEEEEeEEEEEEECCh-HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            2  122223456788899988764 467889999999999999988899999999999999999999999998764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=7.1e-33  Score=236.88  Aligned_cols=217  Identities=34%  Similarity=0.645  Sum_probs=185.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|+++|+++++|.++++++++++|+++|++||+++|+||+|+||++.|..+.++.++..+|+++|||++++| +|+
T Consensus       198 ~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G-lri  276 (426)
T 1sff_A          198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPL  276 (426)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTS-SCC
T ss_pred             CceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCC-Cce
Confidence            5899999999888888899999999999999999999999999999998877655566777889999999999999 999


Q ss_pred             heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548         100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN  177 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~  177 (242)
                      ||+++++++++.+.+.....+++.++++++++.++++.++++++.++++++++++++.| +.+.  .......++.|+++
T Consensus       277 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~g~~~  355 (426)
T 1sff_A          277 AGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGL-LAIAEKHPEIGDVRGLGAMI  355 (426)
T ss_dssp             EEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHTCTTEEEEEEETTEE
T ss_pred             EEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEEEEEEEE
Confidence            99999999999888766777888999999999999998877778899999999999999 6543  12223345568999


Q ss_pred             EEEecC-------CchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         178 AIVLDK-------SILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       178 ~~~~~~-------~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |+++..       ...+..++.+.|.++||.+.++.  ++++|+++++.++++++++++++|+++++++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          356 AIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             EEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            999853       11457789999999999999875  68999999989999999999999999988763

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=1.6e-33  Score=242.76  Aligned_cols=216  Identities=31%  Similarity=0.568  Sum_probs=185.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI   99 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~   99 (242)
                      +++++|++||+++++|.++++++++++|+++|++||+++|+||+|++|+++|..+.++.+++.+|++++||++++|++|+
T Consensus       218 ~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~  297 (449)
T 3a8u_X          218 SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPM  297 (449)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCC
T ss_pred             CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCce
Confidence            58999999999999998899999999999999999999999999999988876556667788899999999999876899


Q ss_pred             heeEeChhhhhccCCC---------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548         100 SAVLADDEVMGTLVPG---------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV  169 (242)
Q Consensus       100 g~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  169 (242)
                      |++++++++++.+...         .++++++.|+++++++.++++.++++++.++++++++++++.| +.++. .....
T Consensus       298 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L-~~l~~~~~~~~  376 (449)
T 3a8u_X          298 GAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL-HGIKGAKNVID  376 (449)
T ss_dssp             EEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HTTTTSTTEEE
T ss_pred             EEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHhcCCCeEE
Confidence            9999999888877653         3567888999999999999998877788999999999999999 66542 22233


Q ss_pred             EeeeceeEEEEecCCc--h--hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSI--L--EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .++.|.+++++++...  .  +..++.+.|.++||.+.+++ +++|++|++.++++++++++++|+++++++
T Consensus       377 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          377 IRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             EEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            4677899999987641  1  33479999999999999975 899999999999999999999999998764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=6.7e-34  Score=259.71  Aligned_cols=215  Identities=25%  Similarity=0.400  Sum_probs=183.2

Q ss_pred             CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .+++++|++||+ ++.+|.++++++|+++|+++|++||+++|+||+|+|||++|..++.+++|+.||++++||+++|||+
T Consensus       592 ~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~  671 (831)
T 4a0g_A          592 SAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMV  671 (831)
T ss_dssp             -CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSS
T ss_pred             CCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCcc
Confidence            468999999997 9999999999999999999999999999999999999999998888889999999999999999978


Q ss_pred             chheeEeChhhhhccCCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH--------HHHHHHhhcC
Q psy6548          98 PISAVLADDEVMGTLVPG------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI--------FRSELRSRLS  163 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~--------l~~~l~~~l~  163 (242)
                      |+|++++++++++.+.+.      .+++||++||+++++++++++.++++++.++++++.++        +.+.+ +..+
T Consensus       672 Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l-~~~~  750 (831)
T 4a0g_A          672 PLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQI-SSHS  750 (831)
T ss_dssp             CCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHH-HHST
T ss_pred             CcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCC
Confidence            999999999999988763      47899999999999999999999876665555443333        33344 3332


Q ss_pred             CCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                        ....+.+.|.++++++..+.       ..+..+.+.|+++|+++.|. ++.+|++|++.+|+++|++++++|++++++
T Consensus       751 --~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~lrl~pp~~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          751 --AVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNVIYLMCGPCTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             --TEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --CceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              45677889999999986531       34667999999999999987 489999999999999999999999999876


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      +
T Consensus       828 l  828 (831)
T 4a0g_A          828 F  828 (831)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=3.7e-32  Score=230.33  Aligned_cols=226  Identities=29%  Similarity=0.502  Sum_probs=190.1

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|++|+++ +...++++++|+++|+++++|.+.++++++++|+++|++||+++|+||+|+||++.|..+..+..+..
T Consensus       167 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~  246 (395)
T 1vef_A          167 VEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV  246 (395)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred             eeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCC
Confidence            45567889998 44444689999999999999988899999999999999999999999999988776654444555677


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|++++||++++| +|+|++++++++++.+.+.....+++.++++++++.++++.+..+++.++++++++++++.| +.+
T Consensus       247 ~d~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l-~~~  324 (395)
T 1vef_A          247 PDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL-RAI  324 (395)
T ss_dssp             CSEEEECGGGGTT-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HTS
T ss_pred             CCEEEEcccccCC-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHh
Confidence            8999999999999 99999999988888888755667888899999999999988766668899999999999999 666


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.......++.|.++++.++..   ..++.++|. ++||.+.+++.+++|++++..++++++++++++|++++
T Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~---~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          325 PSPKIREVRGMGLMVGLELKEK---AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             CCTTEEEEEEETTEEEEEESSC---SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCceEEEEEEEEEEEEEEcCh---HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            5322223456788999988753   567899999 99999999888999999998999999999999998875

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-32  Score=235.43  Aligned_cols=224  Identities=25%  Similarity=0.396  Sum_probs=187.6

Q ss_pred             ccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||+|+++  +.+.+  +++++|++||+++++|.++++++++++|+++ ++||++||+||+|+|| +.|..+..+.+
T Consensus       178 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~  255 (424)
T 2e7u_A          178 TLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELL  255 (424)
T ss_dssp             EEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHH
T ss_pred             eEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHh
Confidence            56788999998  44442  5899999999999999889999999999999 9999999999999998 66665566677


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFR  155 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~  155 (242)
                      ++.||++++||++++| +|+||+++++++++.+.+.   .+..+++.|+++++++.++++.+++ +++.+++++++++++
T Consensus       256 ~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~  334 (424)
T 2e7u_A          256 GLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLE  334 (424)
T ss_dssp             TCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            8889999999999999 9999999999999988762   3567889999999999999998877 778999999999999


Q ss_pred             HHHHhhcC--CCCCCeEeeeceeEEEEecCC------------chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLS--PDIVPVVRGKGLLNAIVLDKS------------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      +.| +.+.  .......++.|.++|++++..            ..+..++.+.|+++||++.+++...+|+  ++.++++
T Consensus       335 ~~L-~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~  411 (424)
T 2e7u_A          335 AGL-KEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFL--SVAHREE  411 (424)
T ss_dssp             HHH-HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSSCEEC--CTTCCHH
T ss_pred             HHH-HHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCCceEe--eccCCHH
Confidence            999 5542  123345677889999998751            1346789999999999999986665554  4889999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINT  233 (242)
Q Consensus       222 ~i~~~~~~l~~~  233 (242)
                      ++++++++|+++
T Consensus       412 ~i~~~l~~l~~~  423 (424)
T 2e7u_A          412 DVEKTLEALRKA  423 (424)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=1.4e-32  Score=238.32  Aligned_cols=208  Identities=24%  Similarity=0.402  Sum_probs=176.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC--CCEEEeecc-ccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PDIVILGKA-LSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~~~~~~sK~-~~~g~~   97 (242)
                      ++++|++||+++++|.++|+++++++|+++|++||+++|+||+|+|||++|..++++.+++.  ||+++|||+ ++|| +
T Consensus       258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG-~  336 (472)
T 1ohv_A          258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG-F  336 (472)
T ss_dssp             CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEE-E
T ss_pred             CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCC-c
Confidence            89999999999999999999999999999999999999999999999998876677777876  999999999 6766 3


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CC-CCCeEeeec
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PD-IVPVVRGKG  174 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~~~~~~  174 (242)
                          ++ ++++ ..+.+..+.+|+++|+++++++.++++.++++++.++++++++++++.| +.+.  .. ......+.|
T Consensus       337 ----~~-~~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L-~~l~~~~~~~v~~~~~~g  409 (472)
T 1ohv_A          337 ----FH-KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGL-LDLQARYPQFISRVRGRG  409 (472)
T ss_dssp             ----EE-CGGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCTTTCEEEEEET
T ss_pred             ----cC-chhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHhhCCCcEEeecCCc
Confidence                33 5554 3344556788899999999999999998877788999999999999999 6652  11 233456778


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .++++++... .....+.+.|+++||.+.+.+.+.+|+++++.+|++++++++++|+++++++
T Consensus       410 ~~~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          410 TFCSFDTPDE-SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             TEEEEECSSH-HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEeCCh-hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            8999887654 4678899999999999999877899999999999999999999999988754

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=2.2e-32  Score=235.92  Aligned_cols=228  Identities=22%  Similarity=0.369  Sum_probs=185.5

Q ss_pred             ccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||+|+++  +.+.+  +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|| +.|..+..+.+
T Consensus       180 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~  258 (453)
T 2cy8_A          180 TLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALL  258 (453)
T ss_dssp             EEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHH
T ss_pred             eeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHh
Confidence            56788999998  44443  589999999999989988999999999999999999999999999998 66665556667


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCC-----CCCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDV-ILEENMIENAYKMGEI  153 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~a~l~~-~~~~~~~~~~~~~~~~  153 (242)
                      ++.||++++||++++| +|+|++++++++++.+.+     ..++.+++.|+++++++.++++. + .+++.+++++++++
T Consensus       259 ~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~  336 (453)
T 2cy8_A          259 DVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQF  336 (453)
T ss_dssp             TCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             CCCCcEEEEChhhhCC-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence            8889999999999999 899999999999998876     23566889999999999999998 7 67788999999999


Q ss_pred             HHHHHHhhcC--CCCCCeEeeeceeEEEEecC-----C-------------chhHHHHHHHHHHCCceeccCCCCEEEEe
Q psy6548         154 FRSELRSRLS--PDIVPVVRGKGLLNAIVLDK-----S-------------ILEVYDVCIKMKDAGLVTKPISNNIIRLS  213 (242)
Q Consensus       154 l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~  213 (242)
                      +++.| +.+.  .......++.|.++|++++.     .             .....++.+.|+++||.+.+.  +.+|+ 
T Consensus       337 l~~~L-~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~--~~~~l-  412 (453)
T 2cy8_A          337 AREAM-NHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR--GSVFL-  412 (453)
T ss_dssp             HHHHH-HHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT--TEEEC-
T ss_pred             HHHHH-HHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC--CCEEe-
Confidence            99999 5552  12333456778899999875     1             123678999999999999764  33554 


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                       ++.++++++++++++|+++++++.+
T Consensus       413 -~~~~t~~~i~~~l~~l~~~l~~~~~  437 (453)
T 2cy8_A          413 -SAQHEREHVEHLVTTFDRVLDRLAD  437 (453)
T ss_dssp             -CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eccCCHHHHHHHHHHHHHHHHHHHh
Confidence             5889999999999999999987643

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=2.7e-31  Score=223.40  Aligned_cols=220  Identities=31%  Similarity=0.622  Sum_probs=186.7

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|++|+++ +...++++++|+++|++|++|.+.++++++++|+++|++||+++|+||+|++|+..+..+....++..
T Consensus       154 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  233 (375)
T 2eh6_A          154 FSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLK  233 (375)
T ss_dssp             EEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             ceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCC
Confidence            45567788988 55555689999999999999988899999999999999999999999999988776654445556667


Q ss_pred             CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +|++++||++++| +|+|++++++++++.+.+...+.+++.++++++++.++++.+.  ++.++++++++++++.| +.+
T Consensus       234 ~d~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L-~~~  309 (375)
T 2eh6_A          234 PDVIALAKGLGGG-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL-KEL  309 (375)
T ss_dssp             CSEEEECGGGGTT-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHT
T ss_pred             CCEEEEcccccCC-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH
Confidence            8999999999999 8999999999998888876567788889999988888888765  67788999999999999 666


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +.   ...++.+.+++++++.+   ..++.+.|.++||.+.+++.+.+|++++...+++++++++++|+++
T Consensus       310 ~~---~~~~~~g~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          310 GK---GKVKGRGLMLGLELERE---CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             TS---SEEEEETTEEEEECSSC---CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             hc---CCceEEEEEEEEEEcCc---HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            52   34566788999988653   5678999999999999887899999999889999999999999875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=2.5e-35  Score=253.78  Aligned_cols=227  Identities=23%  Similarity=0.281  Sum_probs=193.3

Q ss_pred             ccccCCCChhh-h-cCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           4 QFPVKSKQVPA-K-LKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~-~-~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ++.+||||+++ + .+.+  +++++|++||+++++|.++++++++++|+++|++||++||+||+|+ + ++|..++++.+
T Consensus       212 ~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~  289 (465)
T 2yky_A          212 VVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEML  289 (465)
Confidence            56789999999 4 4443  6899999999999999899999999999999999999999999999 6 77777777888


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCC-----CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF  154 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l  154 (242)
                      ++.||+++|||++++| +|+||+++++++++.+.+     ..+.+|+++|++++++++++++.++++++.++++++++++
T Consensus       290 gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l  368 (465)
T 2yky_A          290 GISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRF  368 (465)
Confidence            9999999999999999 899999999999998887     2477899999999999999999988888899999999999


Q ss_pred             HHHHHhhcCC--CCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548         155 RSELRSRLSP--DIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       155 ~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      +++| +++..  .....+++.|.++++.+....            .....+++.|+++||++.|.+.+.    +++.+|+
T Consensus       369 ~~~L-~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~----~s~~~t~  443 (465)
T 2yky_A          369 RANL-NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA----LSLEIAD  443 (465)
Confidence            9999 65532  344556788999999876510            125678999999999999875332    6688999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy6548         221 QELREGLDIIINTINTMA  238 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~~  238 (242)
                      +|+++++++|+++++++.
T Consensus       444 edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          444 AGRDAFAEALADFIGEQR  461 (465)
Confidence            999999999999988764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=6.7e-27  Score=200.25  Aligned_cols=226  Identities=13%  Similarity=0.133  Sum_probs=174.5

Q ss_pred             cccccCCCChhh--hcCCCC---CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccc
Q psy6548           3 LQFPVKSKQVPA--KLKSNP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~---~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~   75 (242)
                      .++.+|++|+++  +.+.+.   ++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+++  +..|.+ .
T Consensus       171 ~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~  245 (427)
T 2w8t_A          171 EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-V  245 (427)
T ss_dssp             EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-H
T ss_pred             eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-h
Confidence            356789999998  444332   7999999999999998776    999999999999999999999863  333433 2


Q ss_pred             cccCCCCCC----EEEeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHH
Q psy6548          76 IHYEDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMIENAY  148 (242)
Q Consensus        76 ~~~~~~~~~----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~  148 (242)
                      ...+++.++    +.++||+++   .+.||+++++++++.+.+..  ...+.+.+++.++++.++++.++. +++.++++
T Consensus       246 ~~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~  322 (427)
T 2w8t_A          246 YEAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLW  322 (427)
T ss_dssp             HHHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HhhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            334555444    445899997   44589999999988887642  223556788888888888988765 56789999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITE  220 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~  220 (242)
                      ++++++++.| ++++-.+.  .++ .+.++++.++.. .+..++.++|.++||.+.++.       .+++|++++..+++
T Consensus       323 ~~~~~l~~~L-~~~g~~~~--~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~  398 (427)
T 2w8t_A          323 SNARALHGGL-KAMGFRLG--TETCDSAIVAVMLEDQ-EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTP  398 (427)
T ss_dssp             HHHHHHHHHH-HHHTCEES--CSSCCSSEEEEEESSH-HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCH
T ss_pred             HHHHHHHHHH-HHcCCccc--CCCCCCCEEEEEECCH-HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCH
Confidence            9999999999 66542111  122 567888988764 567889999999999998652       36899999998999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q psy6548         221 QELREGLDIIINTINTMAAK  240 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +++++++++|+++++++...
T Consensus       399 e~i~~~~~~l~~~l~~~~~~  418 (427)
T 2w8t_A          399 AQIQTVLGMFQAAGRAVGVI  418 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhCcc
Confidence            99999999999999887543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.95  E-value=1.2e-27  Score=204.41  Aligned_cols=219  Identities=16%  Similarity=0.151  Sum_probs=162.8

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cccc-----CCCC
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHY-----EDVR   82 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~-----~~~~   82 (242)
                      |+++  +.+.++++++|++++++|++| ++++++++++|+++|++||+++|+||+|+++++.|... .+..     .+..
T Consensus       182 d~~~le~~i~~~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  260 (421)
T 3l8a_A          182 DFEQLEKDIIDNNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFT  260 (421)
T ss_dssp             CHHHHHHHHHHTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTE
T ss_pred             CHHHHHHHhhccCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcE
Confidence            6776  444447899999999999999 77788889999999999999999999999987766421 1111     1222


Q ss_pred             CCEEEeecccc-CCccchheeEeC-hhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~  157 (242)
                      +++.++||+++ +| +|+|+++++ +++++.+.+... ..+++.|+++++++.++++..+.  ++..++++++++++++.
T Consensus       261 i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~  339 (421)
T 3l8a_A          261 IILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKE  339 (421)
T ss_dssp             EEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            34555889998 89 899999988 888887766432 33457889999998888874332  45667788888889999


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      | ++++ .+....+..+++.|++++..+.+..++.+.|++ +||.+.++      +.+++|++++  ++++++++++++|
T Consensus       340 L-~~~~-~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l  415 (421)
T 3l8a_A          340 L-EAKT-KIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRI  415 (421)
T ss_dssp             H-HHHC-SCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHH
T ss_pred             H-HhCC-CceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHH
Confidence            8 5553 222222334556678887622356788999975 59999873      4689999966  6999999999999


Q ss_pred             HHHHH
Q psy6548         231 INTIN  235 (242)
Q Consensus       231 ~~~l~  235 (242)
                      +++++
T Consensus       416 ~~~l~  420 (421)
T 3l8a_A          416 ISVFG  420 (421)
T ss_dssp             HHHC-
T ss_pred             HHHHh
Confidence            98764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.94  E-value=2.9e-26  Score=192.71  Aligned_cols=222  Identities=17%  Similarity=0.180  Sum_probs=166.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++|++++++|++|. +.+.+++++|+++|++||+++|+||+|++++..+.....+.++....+.++|
T Consensus       143 d~~~l~~~l~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~s  221 (375)
T 3op7_A          143 DLEKLRQLIRPTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLS  221 (375)
T ss_dssp             CHHHHHHHCCTTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESS
T ss_pred             CHHHHHHhhccCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeECh
Confidence            6666 4444568999999999999995 5577889999999999999999999998875543222233344445566699


Q ss_pred             cccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548          90 KALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDI  166 (242)
Q Consensus        90 K~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~  166 (242)
                      |+++ +| +|+||+++++++++.+......++++.++++++++.++++..+.  +...+.++++++.+++.| +..+. +
T Consensus       222 K~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~  298 (375)
T 3op7_A          222 KTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWI-EEEPL-V  298 (375)
T ss_dssp             SSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-HHCTT-E
T ss_pred             hhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hhCCC-c
Confidence            9998 88 99999999999999998877777788889988888877775432  334566677888888888 55432 1


Q ss_pred             CCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         167 VPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ....+..+.+.++.++.. .+..++++.| .++||.+.|+.    ++++|+++  ..+.+++++++++|+++++++.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~--~~~~~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          299 SYIRPAVVSTSFVKIAVD-MPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGF--ACEQETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             EECCCSSSSCEEEEECCS-SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECC--CSCHHHHHHHHHHHHHHHGGGC-
T ss_pred             eEecCCCeEEEeEEcCCC-CCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHHhh
Confidence            111233456677777655 5677888888 47899998763    68999994  45669999999999999987643

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=3.1e-26  Score=194.92  Aligned_cols=219  Identities=17%  Similarity=0.217  Sum_probs=170.4

Q ss_pred             ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccC
Q psy6548           4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~   79 (242)
                      ++.++++|+++  +.+.++++++|++++++|++|.+.+    +++|+++|++||++||+||+|++  +++.|.++. ..+
T Consensus       167 ~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~  241 (409)
T 3kki_A          167 AHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AEL  241 (409)
T ss_dssp             EEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHH
T ss_pred             EEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhc
Confidence            45678889988  4455556799999999999997776    99999999999999999999987  666665433 333


Q ss_pred             CC--CCCE--EEeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Q psy6548          80 DV--RPDI--VILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKMGE  152 (242)
Q Consensus        80 ~~--~~~~--~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~  152 (242)
                      ++  .+|+  .++||+++++   .|++++++++++.+......  .+.+.++.+++++.++++.++. +++.++++++++
T Consensus       242 ~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~  318 (409)
T 3kki_A          242 GLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMAR  318 (409)
T ss_dssp             TCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44  4566  4489999955   58899998888776643222  1224577888888888887765 467788999999


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHHHHHH
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++++.| ++++..+    .+.+.++++.++.. .+..++.+.|.++||.+.+       .+.+++|++++..++++++++
T Consensus       319 ~l~~~L-~~~g~~~----~~~~~~~~~~~~~~-~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~  392 (409)
T 3kki_A          319 KLRIGL-SQLGLTI----RSESQIIGLETGDE-RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAK  392 (409)
T ss_dssp             HHHHHH-HTTTCCC----CCSSSEEEEEEESH-HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHH
T ss_pred             HHHHHH-HHcCCcc----CCCCCEEEEEeCCH-HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHH
Confidence            999999 6664221    24678888888775 5677899999999999953       346799999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      ++++|+++++.
T Consensus       393 ~~~~l~~~l~~  403 (409)
T 3kki_A          393 IIEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998875

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.94  E-value=7.2e-26  Score=195.03  Aligned_cols=215  Identities=15%  Similarity=0.178  Sum_probs=159.6

Q ss_pred             CCEEEEEE-cccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc----ccccCCCCCCEEEeeccccC
Q psy6548          20 PNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL----AIHYEDVRPDIVILGKALSG   94 (242)
Q Consensus        20 ~~~~~i~~-e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~----~~~~~~~~~~~~~~sK~~~~   94 (242)
                      +++++|++ ..++|++|.+ .+.+++++|+++|++||++||+||+|.++...|...    .++..+....+.+|||++++
T Consensus       215 ~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~  293 (448)
T 3aow_A          215 KKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP  293 (448)
T ss_dssp             CCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCG
T ss_pred             CCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccc
Confidence            37888854 5578888854 677899999999999999999999998875544321    11212223345559999998


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      | +|+||+++++++++.+.......+++.+++++.++.++++..  ..  +...+.++++++.+.+.|++.++..+....
T Consensus       294 G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~  372 (448)
T 3aow_A          294 G-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK  372 (448)
T ss_dssp             G-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred             c-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC
Confidence            9 999999999999888876444556677889888888777642  11  334566667888888888333442222223


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +..|+++|+.++.. .+..++.+.|.++||.+.|+        +.+++|++++.. +++++++++++|++++++..
T Consensus       373 p~~g~~~~v~~~~~-~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~~~  446 (448)
T 3aow_A          373 PEGGMFIWVTLPDG-IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYV-DEDKIMEGIKRLAETIKEEL  446 (448)
T ss_dssp             CSBSSEEEEECSTT-CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSS-CTHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCC-CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            44578999999764 56788999999999999874        357899997764 89999999999999998754

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.93  E-value=1.1e-25  Score=190.35  Aligned_cols=223  Identities=17%  Similarity=0.271  Sum_probs=172.4

Q ss_pred             cccccCCCChhh--hcCCC-----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-ccc-CccCcc
Q psy6548           3 LQFPVKSKQVPA--KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGL-GRTGKL   73 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~-----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~-~~~g~~   73 (242)
                      .++.+|++|+++  +.+.+     .++++|++++++|++|.+.+    +++|+++|++||+++|+||+| .++ +..+.+
T Consensus       150 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~  225 (399)
T 3tqx_A          150 QRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG  225 (399)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC
T ss_pred             ceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence            356778888887  33332     28999999999999998776    999999999999999999999 453 333332


Q ss_pred             cccccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHH-H-hccHHH
Q psy6548          74 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVI-L-EENMIE  145 (242)
Q Consensus        74 ~~~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~-~-~~~~~~  145 (242)
                       ....+++  .+|++  ++||+++ | .+.||+++++++++.+.....  ..+.+.++++++++.++++.. + .++..+
T Consensus       226 -~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  302 (399)
T 3tqx_A          226 -TPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRK  302 (399)
T ss_dssp             -HHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             -hHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHH
Confidence             2334444  66777  5889999 5 677999999998888765322  223367788888888888877 3 256788


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcC
Q psy6548         146 NAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNI  218 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~  218 (242)
                      +++++++++++.| +.++-.   ..++.+.++++.++.. .+..++.+.|.++||.+.+.       +.+++|++++..+
T Consensus       303 ~~~~~~~~l~~~L-~~~g~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~  377 (399)
T 3tqx_A          303 QLQENSRYFRAGM-EKLGFQ---LVPGNHPIIPVMLGDA-QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVH  377 (399)
T ss_dssp             HHHHHHHHHHHHH-HHHTCC---BCCCSSSEEEEEEECH-HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHH-HHcCCC---cCCCCCCEEEEEeCCH-HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCC
Confidence            8999999999999 666421   1245677888888775 57889999999999999843       3468999998889


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTINTM  237 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~  237 (242)
                      +++++++++++|+++++++
T Consensus       378 ~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          378 TQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998875

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.93  E-value=4.7e-25  Score=187.31  Aligned_cols=213  Identities=16%  Similarity=0.179  Sum_probs=160.7

Q ss_pred             CCEEEEE-EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCC---CCEEEeeccccC
Q psy6548          20 PNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVR---PDIVILGKALSG   94 (242)
Q Consensus        20 ~~~~~i~-~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~---~~~~~~sK~~~~   94 (242)
                      +++++|+ +++++|++|.+ .+.+++++|+++|++||+++|+||+|+++...+.. .....++..   ..+.++||++++
T Consensus       173 ~~~~~v~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  251 (407)
T 2zc0_A          173 QKVKLIYTIPTGQNPMGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGT  251 (407)
T ss_dssp             CCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCT
T ss_pred             CCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCC
Confidence            3788874 66788999964 56789999999999999999999999877554432 122222211   234458999998


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHhh-cCCCCCC
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L---EENMIENAYKMGEIFRSELRSR-LSPDIVP  168 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~---~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~  168 (242)
                      | +|+||+++++++++.+.......+++.+++++.++.++++..  +   -+...+.++++++++++.| +. ++. +..
T Consensus       252 G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~-~~~  328 (407)
T 2zc0_A          252 G-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKAL-ENHLPN-AEF  328 (407)
T ss_dssp             T-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHH-HHHCTT-SCB
T ss_pred             C-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH-HHhCCC-CEE
Confidence            8 899999999998888776545566777888888888887753  2   1456777888899999999 54 332 222


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ..+..++++|+.++.. .+..++.+.|.++ ||.+.++        +.+++|++++.. +++++++++++|+++++++.
T Consensus       329 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~  405 (407)
T 2zc0_A          329 TKPIAGMFVMFFLPEG-ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKF  405 (407)
T ss_dssp             CCCSBSSEEEEECSTT-CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCcEEEEEEcCCC-CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence            2244578899998754 4678899999998 9999875        357899998766 89999999999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.93  E-value=2.5e-25  Score=187.74  Aligned_cols=222  Identities=13%  Similarity=0.155  Sum_probs=164.8

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCC-CCC-
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDV-RPD-   84 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~-~~~-   84 (242)
                      .|+++  +.+.++++++|++++++|++|. +++.+.+++|+++|++||+++|+||+|+++.+.|.. ......+. .+| 
T Consensus       147 ~d~~~l~~~l~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~  225 (391)
T 3dzz_A          147 VNWADLEEKLATPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNW  225 (391)
T ss_dssp             CCHHHHHHHHTSTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGG
T ss_pred             ecHHHHHHHHhccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCc
Confidence            46666  4455578999999999999995 456677999999999999999999999887666532 22222221 255 


Q ss_pred             -EE--Eeecccc-CCccchheeEeC-hhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHH
Q psy6548          85 -IV--ILGKALS-GGLYPISAVLAD-DEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRS  156 (242)
Q Consensus        85 -~~--~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~  156 (242)
                       ++  ++||+++ +| +|+||++++ +++++.+..... ..+++.+++++.++.++++...  .++..++++++++++++
T Consensus       226 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  304 (391)
T 3dzz_A          226 VVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE  304 (391)
T ss_dssp             EEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence             33  3889998 88 899999987 888887765322 3445778888888888877532  24567778888899999


Q ss_pred             HHHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         157 ELRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       157 ~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      .| +. ++. +....+..+++.|+.++..+.+..++.++|. ++||.+.++      +++++|++++  +++++++++++
T Consensus       305 ~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~  380 (391)
T 3dzz_A          305 FL-AKEVPE-VKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQ  380 (391)
T ss_dssp             HH-HHHCTT-SEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHH
T ss_pred             HH-HhhCCC-cEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHH
Confidence            99 55 542 2222234566778888753246888999996 899999875      2489999966  69999999999


Q ss_pred             HHHHHHHHH
Q psy6548         229 IIINTINTM  237 (242)
Q Consensus       229 ~l~~~l~~~  237 (242)
                      +|+++++++
T Consensus       381 ~l~~~l~~~  389 (391)
T 3dzz_A          381 RLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999998765

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.93  E-value=3.9e-25  Score=186.71  Aligned_cols=220  Identities=16%  Similarity=0.133  Sum_probs=162.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-C-CCCCEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-D-VRPDIV   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~-~~~~~~   86 (242)
                      |+++ +...+.++++|++++++|++|.+ .+.+.+++|+++|++||+++|+||+|+++...+. ......+ + ...+++
T Consensus       149 d~~~l~~~l~~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (389)
T 1gd9_A          149 NVDELKKYVTDKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTIT  227 (389)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEE
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEE
Confidence            5666 33334478899999999999955 5678999999999999999999999988755443 2222222 2 123433


Q ss_pred             --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy6548          87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~  159 (242)
                        ++||+++ +| +|+||+++++++++.+.+.....+++.+++++.++.++++....    ++..++++++++.+.+.| 
T Consensus       228 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-  305 (389)
T 1gd9_A          228 VNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRL-  305 (389)
T ss_dssp             EEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH-
Confidence              4889998 88 89999999999988887655556678888888888888774332    345677788888888888 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.++  +....+..++++|+.++..+.+..++.+.|. ++||.+.++      +++++|++++  .+++++++++++|++
T Consensus       306 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~  381 (389)
T 1gd9_A          306 NEMG--LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMER  381 (389)
T ss_dssp             HHTT--CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred             HHcC--CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            6553  2222234567788887641146788999998 899999875      2678999966  489999999999999


Q ss_pred             HHHHH
Q psy6548         233 TINTM  237 (242)
Q Consensus       233 ~l~~~  237 (242)
                      ++++.
T Consensus       382 ~~~~~  386 (389)
T 1gd9_A          382 VLKER  386 (389)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.93  E-value=2.2e-25  Score=190.76  Aligned_cols=219  Identities=17%  Similarity=0.165  Sum_probs=162.1

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cccc----CCCCC
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHY----EDVRP   83 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~----~~~~~   83 (242)
                      .|+++ +...++++++|++++++|++|.+ ++++++++|+++|++||+++|+||+|+++.+.|... .+..    .+..+
T Consensus       170 ~d~~~l~~~l~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  248 (429)
T 1yiz_A          170 LDNNELEALFNEKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI  248 (429)
T ss_dssp             CCHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEE
T ss_pred             cCHHHHHHHhccCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceE
Confidence            35666 43335689999999999999955 567899999999999999999999999876554321 1111    22223


Q ss_pred             CEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-----HHh----ccHHHHHHHHHHH
Q psy6548          84 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-----ILE----ENMIENAYKMGEI  153 (242)
Q Consensus        84 ~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-----~~~----~~~~~~~~~~~~~  153 (242)
                      .+.++||+++ +| +|+||+++++++++.+.......+++.+++++.++.++++.     ...    ++..++++++++.
T Consensus       249 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (429)
T 1yiz_A          249 TIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDY  327 (429)
T ss_dssp             EEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH
T ss_pred             EEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence            3455889999 88 89999999999988877644556778899999888888886     311    2345667778888


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-----------hhHHHHHHHHH-HCCceeccCC-----------CCEE
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-----------LEVYDVCIKMK-DAGLVTKPIS-----------NNII  210 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~-~~gi~~~~~~-----------~~~l  210 (242)
                      +++.| ++++  +....+..|+++|++++...           .+..++.++|. ++||.+.++.           ++++
T Consensus       328 l~~~L-~~~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i  404 (429)
T 1yiz_A          328 MASFL-AEVG--MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV  404 (429)
T ss_dssp             HHHHH-HHHT--CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred             HHHHH-HhCC--CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence            88888 5553  22223345788999987530           25678888887 7899998751           5799


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         211 RLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      |++++  .+++++++++++|+++++
T Consensus       405 Ris~~--~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          405 RYCFF--KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             EEECC--SCHHHHHHHHHHHHHHSC
T ss_pred             EEEec--CCHHHHHHHHHHHHHhcc
Confidence            99976  599999999999988764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.93  E-value=5e-25  Score=186.28  Aligned_cols=214  Identities=14%  Similarity=0.153  Sum_probs=157.8

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEEeecccc-CCccc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVILGKALS-GGLYP   98 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~sK~~~-~g~~~   98 (242)
                      ++++|++++++|++|.+ .+.+.+++|+++|++||+++|+||+|+++...+.......+ +....+.++||+++ +| +|
T Consensus       161 ~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r  238 (391)
T 3h14_A          161 DLAGLMVASPANPTGTM-LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WR  238 (391)
T ss_dssp             CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SC
T ss_pred             CCeEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ce
Confidence            78888999999999954 46677999999999999999999999987655542222222 11112234889998 89 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN  177 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  177 (242)
                      +||+++++++++.+.......+++.+++++.++.++++..+. ++..++++++++.+++.| +.++.... ..+..++++
T Consensus       239 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~-~~~~~~~~~  316 (391)
T 3h14_A          239 VGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERL-PKAGFTRI-APPDGAFYV  316 (391)
T ss_dssp             CEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HHHTCCCB-CCCCBTTEE
T ss_pred             eEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHcCCCcc-cCCCeeEEE
Confidence            999999999888887655566778888888888777762111 345677788888888888 66642211 123346788


Q ss_pred             EEEecCCchhHHHHHHHHHHC-CceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         178 AIVLDKSILEVYDVCIKMKDA-GLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      |+.++....+..++.++|+++ ||.+.++       +.+++|++++.  +++++++++++|++++++....
T Consensus       317 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~~  385 (391)
T 3h14_A          317 YADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGEG  385 (391)
T ss_dssp             EEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC---
T ss_pred             EEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhccc
Confidence            888875325688899998876 9999864       25799999654  8899999999999999876543

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=8.7e-26  Score=191.34  Aligned_cols=223  Identities=15%  Similarity=0.162  Sum_probs=161.9

Q ss_pred             Chhh--hcCCCCCEEEE-EEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCC---C
Q psy6548          11 QVPA--KLKSNPNICAF-MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVR---P   83 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i-~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~---~   83 (242)
                      |+++  +.+.++++++| +++.++|++|.+ .+.+++++|+++|++||+++|+||+|+++...|.. .....++..   +
T Consensus       150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  228 (397)
T 2zyj_A          150 DLDALEEVLKRERPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYP  228 (397)
T ss_dssp             CHHHHHHHHHHCCCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred             CHHHHHHHHhhcCCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCC
Confidence            5665  33444467777 467788999954 56789999999999999999999999887654432 111222211   2


Q ss_pred             C---EEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHH
Q psy6548          84 D---IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMIENAYKMGEIFRSE  157 (242)
Q Consensus        84 ~---~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~~~~~~~~~~~~~~l~~~  157 (242)
                      +   +.++||++++| +|+||+++++++++.+.......+++.+++++.++.++++...   -++..++++++++.+.+.
T Consensus       229 ~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  307 (397)
T 2zyj_A          229 GVIYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA  307 (397)
T ss_dssp             CEEEEEESTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeccccccccc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2   33488999988 8999999999988887754444556678888888777776321   133456677778888888


Q ss_pred             HHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         158 LRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       158 l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      | ++ ++.++....+..|+++|++++.. .+..++.++|.++||.+.++        +++++|++++.. ++++++++++
T Consensus       308 L-~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~  384 (397)
T 2zyj_A          308 L-DREVPKEVRYTRPKGGMFVWMELPKG-LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVR  384 (397)
T ss_dssp             H-HHHSCTTSEECCCSBSSEEEEECSTT-CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHH
T ss_pred             H-HHHCCCCeEEccCCccEEEEEEcCCC-CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHH
Confidence            8 44 33222212234578899998764 46788999999999999864        357999998765 8999999999


Q ss_pred             HHHHHHHHHh
Q psy6548         229 IIINTINTMA  238 (242)
Q Consensus       229 ~l~~~l~~~~  238 (242)
                      +|+++++++.
T Consensus       385 ~l~~~l~~~~  394 (397)
T 2zyj_A          385 RLGRALKGLL  394 (397)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9e-25  Score=188.11  Aligned_cols=216  Identities=16%  Similarity=0.209  Sum_probs=161.3

Q ss_pred             CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc-----cCCCCC
Q psy6548          10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-----YEDVRP   83 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~-----~~~~~~   83 (242)
                      .|+++ +...++++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|.++...+....+.     .++...
T Consensus       189 ~d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i  267 (447)
T 3b46_A          189 IDFEQFEKAITSKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTL  267 (447)
T ss_dssp             ECHHHHHTTCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEE
T ss_pred             cCHHHHHHhhccCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEE
Confidence            35666 44445689999999999999965 567899999999999999999999999875554211111     123333


Q ss_pred             CEEEeecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHH
Q psy6548          84 DIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        84 ~~~~~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~  157 (242)
                      .+.++||+++ +| +|+||+++ ++++++.+.......+++.+++++.++.++++....    +++.+.++++++.+.+.
T Consensus       268 ~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (447)
T 3b46_A          268 TVGSAGKSFAATG-WRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSI  346 (447)
T ss_dssp             EEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCchhcCCcc-hhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            4555899999 89 99999999 999888876544445677888888888888886532    23567788888888888


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCC--------------chhHHHHHHHHH-HCCceeccCC-----------CCEEE
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKS--------------ILEVYDVCIKMK-DAGLVTKPIS-----------NNIIR  211 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~gi~~~~~~-----------~~~lR  211 (242)
                      | ++++  +....+..|+++|++++..              ..+..+++++|. ++||.+.|+.           ++++|
T Consensus       347 L-~~~g--~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iR  423 (447)
T 3b46_A          347 F-DELG--LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLR  423 (447)
T ss_dssp             H-HHHT--CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEE
T ss_pred             H-HHCC--CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEE
Confidence            8 6554  2222345678899988642              135678898887 5899998752           68999


Q ss_pred             EeccCcCCHHHHHHHHHHHHH
Q psy6548         212 LSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      ++++  .+++++++++++|++
T Consensus       424 ls~~--~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          424 FAVC--KDDAYLENAVERLKL  442 (447)
T ss_dssp             EECC--SCHHHHHHHHHHGGG
T ss_pred             EEEe--CCHHHHHHHHHHHHH
Confidence            9965  589999999999876

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=1.7e-25  Score=191.42  Aligned_cols=215  Identities=17%  Similarity=0.231  Sum_probs=159.9

Q ss_pred             CEEEEE-EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCC---EEEeeccccCC
Q psy6548          21 NICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPD---IVILGKALSGG   95 (242)
Q Consensus        21 ~~~~i~-~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~---~~~~sK~~~~g   95 (242)
                      ++++|+ +..++|++|.+ .+.+++++|+++|++||+++|+||+|+++...|.. ..+..++..++   +.++||++++|
T Consensus       187 ~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G  265 (425)
T 1vp4_A          187 QVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG  265 (425)
T ss_dssp             GEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG
T ss_pred             CceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc
Confidence            788874 67788999854 56789999999999999999999999887554432 12211111122   33489999988


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh--ccHHHHHHHHHHHHHHHHHhhc-CC--CCCC
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE--ENMIENAYKMGEIFRSELRSRL-SP--DIVP  168 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~--~~~~~~~~~~~~~l~~~l~~~l-~~--~~~~  168 (242)
                       +|+||+++++++++.+.......+++.+++++.++.++++..  ..  +...+.++++++.+++.| +.. +.  ++..
T Consensus       266 -~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~g~~~  343 (425)
T 1vp4_A          266 -LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNAL-EEYFSDIPGVKW  343 (425)
T ss_dssp             -GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHH-HHHSTTSTTCEE
T ss_pred             -cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEE
Confidence             899999999998888775444455677889998888888753  11  345667778888899999 543 32  2222


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ..+..|+++|+.++.. .+..++.+.|.++||.+.++        +.+++|++++.. +++++++++++|+++++++.+.
T Consensus       344 ~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          344 VKSEGGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             CCCSBSSEEEEECCTT-CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCccEEEEEEcCCC-CCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhh
Confidence            2245678999998753 45677899999999999864        357899998764 8999999999999999887654

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.93  E-value=8.2e-26  Score=190.12  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=152.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCC---CCCCEEEeecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYED---VRPDIVILGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~---~~~~~~~~sK~~~-   93 (242)
                      +++++++++++++|++|.+ .+.+++++|+++|++||+++|+||+|+++...+... .....+   ....+.++||+++ 
T Consensus       156 ~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  234 (376)
T 2dou_A          156 WREAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNL  234 (376)
T ss_dssp             HHHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTC
T ss_pred             ccCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCC
Confidence            3578999998889999955 567899999999999999999999998875544321 122222   1222345889998 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||+++++++++.+.......+++.+++++.++.++++..+.  ++..+.++++++.+.+.| +++   +....+
T Consensus       235 ~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~---~~~~~~  309 (376)
T 2dou_A          235 AG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEAL-KGV---LSLLPP  309 (376)
T ss_dssp             GG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH-TTT---SEECCC
T ss_pred             hh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHh---cCccCC
Confidence            88 89999999999988877644445667788888888777764211  334566677777777777 443   111123


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ..++++|+.++.. .+..++.++|.++||.+.++      +.+++|++++  .+++++++++++|++++
T Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          310 RATMYLWGRLPEG-VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL  375 (376)
T ss_dssp             CBSSEEEEECCTT-CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred             CeeEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence            3567888998754 46788999999999999875      2579999965  48999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.93  E-value=6.8e-25  Score=187.92  Aligned_cols=218  Identities=12%  Similarity=0.092  Sum_probs=163.2

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-c--------cccc-
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-L--------AIHY-   78 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~--------~~~~-   78 (242)
                      |+++  +.+.++++++|+++.++|++|. +.+.+.+++|+++|++||+++|+||+|+++...+.. .        .+.. 
T Consensus       170 d~~~l~~~l~~~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (437)
T 3g0t_A          170 LREKLESYLQTGQFCSIIYSNPNNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANY  248 (437)
T ss_dssp             HHHHHHHHHTTTCCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGT
T ss_pred             CHHHHHHHHhcCCceEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCC
Confidence            4555  4454678888888777999995 456677999999999999999999999875433221 1        1111 


Q ss_pred             CCCCCCEEEeecccc-CCccchheeEeChhhhh-c-----------------cCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALS-GGLYPISAVLADDEVMG-T-----------------LVPGTHGSTYGGNPLACKLAMTALDVIL  139 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~-~g~~~~g~~~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~~~~a~a~l~~~~  139 (242)
                      .+....+.++||.++ +| +|+||+++++++++ .                 +.......+++.+++++.++.++++...
T Consensus       249 ~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  327 (437)
T 3g0t_A          249 TDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN  327 (437)
T ss_dssp             CSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH
Confidence            111122334889999 89 99999999999988 7                 7664445567888999998888888765


Q ss_pred             -----hccHHHHHHHHHHHHHHHHHhhcCCCCCCe------Ee-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-
Q psy6548         140 -----EENMIENAYKMGEIFRSELRSRLSPDIVPV------VR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-  206 (242)
Q Consensus       140 -----~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-  206 (242)
                           -++..++++++++.+++.| +.++  +...      .+ ..++++|+.++.  .+..++.++|.++||.+.++. 
T Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~~~~  402 (437)
T 3g0t_A          328 DGEYNFRDSVIEYGRKARIMKKMF-LDNG--FNIVYDKDGNEPLADGFYFTVGYKG--MDSSKLIEKFVRYGMCAITLKT  402 (437)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHH-HTTT--EEESSCEETTEECCSSSEEEEEETT--CCHHHHHHHHHHTTEECEESTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHcC--CEEeccccCCCCCceeEEEEEecCC--CCHHHHHHHHHHcCeEEeeccc
Confidence                 2356778888889999999 6653  1111      23 567889999883  578899999999999998763 


Q ss_pred             -----CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 -----NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 -----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                           ++.+|++++.. +++++++++++|++++++
T Consensus       403 ~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          403 TGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             TTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence                 27899998844 999999999999987753

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.92  E-value=1.1e-24  Score=184.71  Aligned_cols=223  Identities=16%  Similarity=0.244  Sum_probs=171.2

Q ss_pred             ccccCCCChhh--hcCCC--C---CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccC-ccCccc
Q psy6548           4 QFPVKSKQVPA--KLKSN--P---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLG-RTGKLL   74 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~--~---~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~-~~g~~~   74 (242)
                      ++.+|++|+++  +.+.+  +   ++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ |+. +.+..+
T Consensus       153 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~  228 (401)
T 1fc4_A          153 RYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS  228 (401)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH
T ss_pred             eEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc
Confidence            45677888887  33332  1   7899999999999997776    9999999999999999999994 763 344432


Q ss_pred             ccccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHH
Q psy6548          75 AIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMIENA  147 (242)
Q Consensus        75 ~~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~  147 (242)
                       ....++  ..|++  ++||+++++ . .||+++++++++.+....  ...+++.++++++++.++++.+.. +++.+++
T Consensus       229 -~~~~~~~~~~di~~~s~sK~~~~~-~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  305 (401)
T 1fc4_A          229 -HEYCDVMGRVDIITGTLGKALGGA-S-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRL  305 (401)
T ss_dssp             -HHHTTCTTCCSEEEEESSSTTCSS-S-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -HHHcCCCcCCcEEEecchhhccCC-C-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence             122333  24666  488999766 4 499999999888776532  223557788999999989887754 5678889


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCH
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITE  220 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~  220 (242)
                      +++++++++.| +.++-..   .++.+.++++.++.. .+..++.+.|.++||.+.++.       .+++|++++..+++
T Consensus       306 ~~~~~~l~~~L-~~~g~~~---~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~  380 (401)
T 1fc4_A          306 WANARQFREQM-SAAGFTL---AGADHAIIPVMLGDA-VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTP  380 (401)
T ss_dssp             HHHHHHHHHHH-HHTTCCB---CCSSSSEEEEEEECH-HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCH
T ss_pred             HHHHHHHHHHH-HHcCCcc---cCCCCCEEEEEcCCh-HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCH
Confidence            99999999999 6654211   145778889988764 567889999999999998652       35899999888999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy6548         221 QELREGLDIIINTINTMA  238 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~~  238 (242)
                      +++++++++|+++++++.
T Consensus       381 ~~i~~~~~~l~~~~~~~~  398 (401)
T 1fc4_A          381 EQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999988764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.92  E-value=5.8e-25  Score=189.22  Aligned_cols=227  Identities=10%  Similarity=0.030  Sum_probs=162.2

Q ss_pred             ccccCCCChhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccC
Q psy6548           4 QFPVKSKQVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYE   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~   79 (242)
                      +..+|+++.+.  ..+. .+++++|++++++|++|. +++.+.+++|+++|++||+++|+||+|++|...+.. ..+..+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  267 (449)
T 3qgu_A          189 IEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEI  267 (449)
T ss_dssp             EEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGS
T ss_pred             eEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhc
Confidence            56677765433  1222 257889998899999995 557788999999999999999999999987655431 122222


Q ss_pred             C----CCCCEEEeecccc-CCccchheeEeChhhhhc--------cCCCCCCCCCCCCHHHHHHHHHHHHHHH---hccH
Q psy6548          80 D----VRPDIVILGKALS-GGLYPISAVLADDEVMGT--------LVPGTHGSTYGGNPLACKLAMTALDVIL---EENM  143 (242)
Q Consensus        80 ~----~~~~~~~~sK~~~-~g~~~~g~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~~~~  143 (242)
                      +    ....+.++||+++ +| +|+||+++++++++.        +.......+++.+++++.++.++++...   .++.
T Consensus       268 ~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  346 (449)
T 3qgu_A          268 PGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAM  346 (449)
T ss_dssp             TTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHH
Confidence            2    1223445999999 89 999999999887652        2211123344678888888888776421   2456


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccC
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPAL  216 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~  216 (242)
                      .++++++++++++.| ++++  +....+..++++|+.++ . .+..++++.|+++ ||.+.|+      +++++|++  +
T Consensus       347 ~~~~~~~~~~l~~~L-~~~g--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~  419 (449)
T 3qgu_A          347 IKFYKENAQILKTTF-TEMG--FSVYGGDDAPYIWVGFP-G-KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--A  419 (449)
T ss_dssp             HHHHHHHHHHHHHHH-HHTT--CCEEESSSSSEEEEECT-T-SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--C
T ss_pred             HHHHHHHHHHHHHHH-HHCC--CeeeCCCCeeEEEEECC-C-CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--e
Confidence            788888999999999 6653  22223345789999988 3 5678899888876 9999864      36899999  5


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         217 NITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ..+++++++++++|++++++-..
T Consensus       420 ~~~~e~i~~~l~~l~~~~~~~~~  442 (449)
T 3qgu_A          420 FGSRENILEAVRRFKEAYGKRNA  442 (449)
T ss_dssp             CSCHHHHHHHHHHHHHHHC----
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCc
Confidence            56999999999999998876433

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=1.6e-24  Score=184.44  Aligned_cols=217  Identities=12%  Similarity=0.130  Sum_probs=160.7

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEE--E
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIV--I   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~--~   87 (242)
                      +++ +...+.++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++...+..... ..+. ..+++  +
T Consensus       164 ~~~l~~~l~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s  241 (409)
T 2gb3_A          164 PQNLESFINERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDS  241 (409)
T ss_dssp             CTTGGGGCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEE
T ss_pred             HHHHHHhhCcCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEec
Confidence            444 33334578999999999999965 56789999999999999999999999877554432221 1122 23554  3


Q ss_pred             eecccc-CCccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          88 LGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      +||+++ +| +|+||+++++ ++++.+......++ +.+++++.++.++++...  -+++.++++++++++++.| ++++
T Consensus       242 ~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g  318 (409)
T 2gb3_A          242 VSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKL-EEHG  318 (409)
T ss_dssp             STTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred             chhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence            789998 88 8999999998 88887765434444 778888888777775321  1345677888888899999 6553


Q ss_pred             CCCCC-eEeeeceeEEEEecCCchhHHHHHHHHHHC------CceeccC---------CCCEEEEeccCcCCHHHHHHHH
Q psy6548         164 PDIVP-VVRGKGLLNAIVLDKSILEVYDVCIKMKDA------GLVTKPI---------SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                        +.. ..+..++++|+.++.  .+..++.++|.++      ||.+.++         +++++|++++  .+++++++++
T Consensus       319 --~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~  392 (409)
T 2gb3_A          319 --LKRFTKPSGAFYITAELPV--EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAI  392 (409)
T ss_dssp             --CCCBCCCSBSSEEEEECSS--SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHH
T ss_pred             --ceeeeCCCeeEEEEEEeCC--CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHH
Confidence              222 223457788888863  4678899999987      9999764         2679999977  7999999999


Q ss_pred             HHHHHHHHHHhh
Q psy6548         228 DIIINTINTMAA  239 (242)
Q Consensus       228 ~~l~~~l~~~~~  239 (242)
                      ++|+++++++.+
T Consensus       393 ~~l~~~l~~~~~  404 (409)
T 2gb3_A          393 DVLMEGLKMFCS  404 (409)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhh
Confidence            999999988653

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.92  E-value=5.4e-25  Score=185.77  Aligned_cols=221  Identities=12%  Similarity=0.114  Sum_probs=161.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cccc-----CCCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHY-----EDVRP   83 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~-----~~~~~   83 (242)
                      |+++ +...+.++++|++++++|++|.+ .+.+.+++|+++|++||+++|+||+|+++...+... ....     .+...
T Consensus       152 d~~~l~~~l~~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (388)
T 1j32_A          152 SPEQIRQAITPKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSV  230 (388)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEE
T ss_pred             CHHHHHHhcCcCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEE
Confidence            5566 44334579999999999999965 467889999999999999999999998875544321 1111     12233


Q ss_pred             CEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh
Q psy6548          84 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        84 ~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~  160 (242)
                      .+.++||+++ +| +|+||+++++++++.+.+.....+++.+++++.++.++++....  ++..++++++++++++.| +
T Consensus       231 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~  308 (388)
T 1j32_A          231 VCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDAL-N  308 (388)
T ss_dssp             EEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-h
Confidence            3455899998 88 89999999999888776644556777888888887777763211  345677788888898999 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .++. +....+..++++|+.++..+.+..++.++|.+ +||.+.++.    ++++|++++  ++++++++++++|+++++
T Consensus       309 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~  385 (388)
T 1j32_A          309 AMPG-LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             TCTT-CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             hCCC-CcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            6632 22222344667777765311357889999986 799998752    578999965  799999999999999887


Q ss_pred             HH
Q psy6548         236 TM  237 (242)
Q Consensus       236 ~~  237 (242)
                      ++
T Consensus       386 ~~  387 (388)
T 1j32_A          386 GI  387 (388)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.92  E-value=1.6e-24  Score=185.39  Aligned_cols=213  Identities=14%  Similarity=0.080  Sum_probs=154.9

Q ss_pred             CCEEEEEEc-ccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCC---CCCCEEEeeccccC
Q psy6548          20 PNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYED---VRPDIVILGKALSG   94 (242)
Q Consensus        20 ~~~~~i~~e-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~---~~~~~~~~sK~~~~   94 (242)
                      +++++|++. .++|++|. +.+.+.+++|+++|++||+++|+||+|+++...|.. ..+..++   ....+.++||++++
T Consensus       189 ~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~  267 (425)
T 2r2n_A          189 NTPKFLYTVPNGNNPTGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISS  267 (425)
T ss_dssp             CCCSEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCS
T ss_pred             CCceEEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccC
Confidence            467888775 57888985 567788999999999999999999999876544431 1111122   11223448999998


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHhh-cCCCC
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-------ENMIENAYKMGEIFRSELRSR-LSPDI  166 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~-l~~~~  166 (242)
                      | +|+||+++++++++.+.......+++.+++++.++.++++.+..       +...+.++++++.+.+.| +. ++...
T Consensus       268 G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~  345 (425)
T 2r2n_A          268 G-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAA-DKWLTGLA  345 (425)
T ss_dssp             T-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSSSE
T ss_pred             c-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCe
Confidence            9 99999999999988877644555677889999888888875321       234566677778888888 44 43211


Q ss_pred             CCeEeeeceeEEEEecCCchhHHH-HHHHHHHCCceeccC---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKSILEVYD-VCIKMKDAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ....+..|+++|++++.. .+..+ +.+.|.++||.+.|+         +.+++|++++. .+++++++++++|++++++
T Consensus       346 ~~~~p~~g~~~~~~~~~~-~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          346 EWHVPAAGMFLWIKVKGI-NDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             EECCCSBSSEEEEEETTC-SCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCceEEEEEEeCCC-CCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            112245688999999764 34445 578889999999864         24789999764 5999999999999998875


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      .
T Consensus       424 ~  424 (425)
T 2r2n_A          424 S  424 (425)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.92  E-value=1e-24  Score=183.72  Aligned_cols=216  Identities=17%  Similarity=0.201  Sum_probs=157.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-cccc-c-cCCCCCCEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAI-H-YEDVRPDIV   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~-~-~~~~~~~~~   86 (242)
                      |+++ +...++++++|++++++|++|.+ .+.+++++|+++|++||+++|+||+|+++.. |. ...+ . ..+....+.
T Consensus       141 d~~~l~~~l~~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~  218 (381)
T 1v2d_A          141 DLSALEKALTPRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVG  218 (381)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEE
T ss_pred             CHHHHHHhcCcCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEe
Confidence            5666 44445679999999999999965 5568899999999999999999999987643 32 1111 1 234444455


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--h--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      ++||+++ +| +|+||+++++++++.+.......+++.+++++.++.++++...  .  +++.++++++++++.+.| ++
T Consensus       219 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~  296 (381)
T 1v2d_A          219 SAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL-RA  296 (381)
T ss_dssp             EHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             echhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            5889998 88 8999999998888877654344466778888888888888552  2  346777888889999999 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .+  +....+..++++|+.++..  +   +.+.|.++||.+.++        +.+++|++++.  +++++++++++|+++
T Consensus       297 ~g--~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~  367 (381)
T 1v2d_A          297 MG--LRVYVPEGTYFLMAELPGW--D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRV  367 (381)
T ss_dssp             TT--CCEECCSBSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred             CC--CEecCCCcceEEEEecChH--h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence            43  2222233467888888764  2   677788999999764        36799999765  999999999999999


Q ss_pred             HHHHhh
Q psy6548         234 INTMAA  239 (242)
Q Consensus       234 l~~~~~  239 (242)
                      +++.++
T Consensus       368 l~~~r~  373 (381)
T 1v2d_A          368 VNSPRE  373 (381)
T ss_dssp             C-----
T ss_pred             Hhhccc
Confidence            887654

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.92  E-value=7.1e-25  Score=186.67  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=156.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccC----CCCCCEEEeecccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYE----DVRPDIVILGKALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~----~~~~~~~~~sK~~~   93 (242)
                      ++++++|+++.++|++|.+ ++.+++++|+++|++||+++|+||+|+++...|.. ..+..+    +....+.++||+++
T Consensus       170 ~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~  248 (412)
T 2x5d_A          170 IPKPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN  248 (412)
T ss_dssp             ESCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS
T ss_pred             ccCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC
Confidence            3577888887788999954 56789999999999999999999999887554431 111122    22222344899998


Q ss_pred             -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                       +| +|+||+++++++++.+.......+++.+++++.++.++++..+.  +++.++++++++.+.+.| +.++  +....
T Consensus       249 ~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~  324 (412)
T 2x5d_A          249 MAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGL-REAG--WMVEN  324 (412)
T ss_dssp             CTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHH-HHHT--CCCCC
T ss_pred             Ccc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--CEecC
Confidence             89 89999999999988877644445677889998888877764321  346677888888899999 5553  22222


Q ss_pred             eeeceeEEEEecCCch---hHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         171 RGKGLLNAIVLDKSIL---EVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +..++++|+.++.. .   +..++.+.|.+ +||.+.++      +.+++|++++.  +++++++++++|+++++++.
T Consensus       325 ~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~  399 (412)
T 2x5d_A          325 PKASMYVWAKIPEP-YAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADG  399 (412)
T ss_dssp             CSBSSEEEEECCTT-TGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeeeEEEEEcCCc-cCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence            33467888888653 3   57789999875 69999875      35799999764  89999999999999998754

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.92  E-value=1.3e-24  Score=183.41  Aligned_cols=216  Identities=14%  Similarity=0.057  Sum_probs=156.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCC-----C
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDV-----R   82 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~-----~   82 (242)
                      |+++  +.+.+  ++++++++++|++|. +.+.+.+++|+++|++||+++|+||+|+++...|... .+..+..     .
T Consensus       154 d~~~l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  230 (391)
T 4dq6_A          154 DYEDIENKIKD--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNT  230 (391)
T ss_dssp             CHHHHHHHCTT--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTE
T ss_pred             eHHHHHHHhhc--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcE
Confidence            5666  44444  899999999999995 5566779999999999999999999998876555321 1111111     1


Q ss_pred             CCEEEeecccc-CCccchheeEeCh-hhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGT-HGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~~sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~-~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~  157 (242)
                      ..+.++||+++ +| +|+||+++++ ++++.+.... ...+++.+++++.++.++++...  .++..++++++++.+++.
T Consensus       231 i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  309 (391)
T 4dq6_A          231 ITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKY  309 (391)
T ss_dssp             EEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            12334889998 88 8999999875 7877776542 23345678888888888877532  134567788888888888


Q ss_pred             HHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHHHHH
Q psy6548         158 LRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       158 l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      | +. ++. +....+..+++.|+.++....+..++.++|.++ ||.+.++      +.+++|++++  .+++++++++++
T Consensus       310 l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~  385 (391)
T 4dq6_A          310 I-NENMPK-LKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIR  385 (391)
T ss_dssp             H-HHHCTT-SEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHH
T ss_pred             H-HhhCCC-CEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHH
Confidence            8 54 442 222223445677788875225788999999998 9999864      3589999966  699999999999


Q ss_pred             HHHHH
Q psy6548         230 IINTI  234 (242)
Q Consensus       230 l~~~l  234 (242)
                      |++++
T Consensus       386 l~~~l  390 (391)
T 4dq6_A          386 IKNAI  390 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=2.7e-24  Score=181.72  Aligned_cols=222  Identities=11%  Similarity=0.082  Sum_probs=158.9

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCC-CC-
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVR-PD-   84 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~-~~-   84 (242)
                      .|+++  +.+.++++++|+++.++|++|.+ .+.+++++|+++|++||+++|+||+|+++...|... ........ .| 
T Consensus       149 ~d~~~l~~~l~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~  227 (390)
T 1d2f_A          149 CDMGKLEAVLAKPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL  227 (390)
T ss_dssp             CCHHHHHHHHTSTTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE
T ss_pred             cCHHHHHHHhccCCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh
Confidence            35666  44555588998888889999965 456789999999999999999999999876555322 11111111 12 


Q ss_pred             EEEeecccc-CCccchheeEeC-hhhhhccCCCCC-CCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          85 IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTH-GSTY-GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        85 ~~~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~-~~~~-~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      +.++||+++ +| +|+||++++ +++++.+..... ..++ +.+++++.++.++++....  ++..++++++++.+++.|
T Consensus       228 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  306 (390)
T 1d2f_A          228 LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKM  306 (390)
T ss_dssp             EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            666999998 89 899999985 778777765434 4454 6788888888888774221  345677888888888888


Q ss_pred             Hhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         159 RSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       159 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                       ++ ++. +....+..++++|+.++..+.+..++.+.|. ++||.+.++      +++++|++++.  +++++++++++|
T Consensus       307 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l  382 (390)
T 1d2f_A          307 -NAAFPE-LNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGL  382 (390)
T ss_dssp             -HHHCSS-CCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHH
T ss_pred             -HhhCCC-CEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHH
Confidence             55 542 2112233456678888652125778999999 689999875      25799999664  689999999999


Q ss_pred             HHHHHHH
Q psy6548         231 INTINTM  237 (242)
Q Consensus       231 ~~~l~~~  237 (242)
                      +++++++
T Consensus       383 ~~~l~~~  389 (390)
T 1d2f_A          383 INAIRAV  389 (390)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.92  E-value=6.8e-26  Score=192.30  Aligned_cols=222  Identities=15%  Similarity=0.147  Sum_probs=158.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCC-C----CC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYED-V----RP   83 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~-~----~~   83 (242)
                      |+++ +...+.++++|+++.++|++|. +++.+.+++|+++|++||+++|+||+|+++...+... .....+ .    ..
T Consensus       168 d~~~l~~~l~~~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i  246 (407)
T 3nra_A          168 DLTGLEEAFKAGARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVV  246 (407)
T ss_dssp             CHHHHHHHHHTTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEE
T ss_pred             CHHHHHHHHhhCCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEE
Confidence            5555 3322337778888888999995 5567889999999999999999999998876555422 222222 1    12


Q ss_pred             CEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHh
Q psy6548          84 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        84 ~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      .+.++||+++ +| +|+||+++++++++.+.......+++.+++++.++.++++...  -++..++++++++++++.| +
T Consensus       247 ~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~  324 (407)
T 3nra_A          247 TIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL-R  324 (407)
T ss_dssp             EEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-h
Confidence            2334889999 88 8999999999998888765555666777877776665554211  1234566777888888888 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .++. +....+..++++|+.++....+..++.++|.+ +||.+.++      +.+++|++++  .+++++++++++|+++
T Consensus       325 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~  401 (407)
T 3nra_A          325 GCEG-VFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTL  401 (407)
T ss_dssp             TSTT-CBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             cCCC-ceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence            6532 22222344678888887632567889999976 59999864      4689999966  4999999999999999


Q ss_pred             HHHHh
Q psy6548         234 INTMA  238 (242)
Q Consensus       234 l~~~~  238 (242)
                      ++++.
T Consensus       402 ~~~~~  406 (407)
T 3nra_A          402 VERYR  406 (407)
T ss_dssp             HHHHB
T ss_pred             HHHhh
Confidence            88753

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.92  E-value=1.1e-24  Score=186.78  Aligned_cols=211  Identities=14%  Similarity=0.108  Sum_probs=150.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cc----cCCCC-----CC----E
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IH----YEDVR-----PD----I   85 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~----~~~~~-----~~----~   85 (242)
                      .++++|++++++|++|. +++.+.+++|+++|++||+++|+||+|+++++.+..+. ..    ..+.+     ++    +
T Consensus       190 ~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i  268 (435)
T 3piu_A          190 LRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV  268 (435)
T ss_dssp             CCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEE
T ss_pred             CCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEE
Confidence            47999999999999995 55667899999999999999999999988655543221 11    11111     23    3


Q ss_pred             EEeecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHH
Q psy6548          86 VILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---E--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~--~~~~~~~~~~~~~l~~~l  158 (242)
                      .++||+|+ +| +|+||+++ ++.+++.+..  ....+..+++++.++.++++...   .  ++..++++++++++++.|
T Consensus       269 ~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  345 (435)
T 3piu_A          269 YSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGL  345 (435)
T ss_dssp             EESSSSSCCGG-GCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeecccCCCc-eeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44899999 89 99999998 4666666654  33344567777777666665322   1  234566777778888888


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~  226 (242)
                       +.++  +....+..|+++|+.++...     .+..++.+.|+++ ||.+.++      +++++|++++.. ++++++++
T Consensus       346 -~~~g--~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~  421 (435)
T 3piu_A          346 -QKSG--ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLA  421 (435)
T ss_dssp             -HTTT--CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHH
T ss_pred             -HhcC--CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHH
Confidence             5543  22222334589999987631     1466888999887 9999863      468999997655 99999999


Q ss_pred             HHHHHHHHHHHh
Q psy6548         227 LDIIINTINTMA  238 (242)
Q Consensus       227 ~~~l~~~l~~~~  238 (242)
                      +++|+++++++.
T Consensus       422 l~~l~~~l~~~~  433 (435)
T 3piu_A          422 MQRLKAFVGEYY  433 (435)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=6.4e-25  Score=185.65  Aligned_cols=214  Identities=19%  Similarity=0.202  Sum_probs=158.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-C-CCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-D-VRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~-~~~~~~-   86 (242)
                      |+++ +...+.++++|++++++|++|. +++.+++++|+++|++||+++|+||+|+++...|.......+ + ...+++ 
T Consensus       163 d~~~l~~~l~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~  241 (389)
T 1o4s_A          163 SLEEVEGLLVGKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYI  241 (389)
T ss_dssp             CHHHHHHTCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEE
T ss_pred             CHHHHHHhcccCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEE
Confidence            5666 4444457899999999999995 456789999999999999999999999876554422111111 1 123433 


Q ss_pred             -Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          87 -ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        87 -~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                       ++||+++ +| +|+||+++++++++.+.+....++++.+++++.++.++++.. .+++.++++++++++++.| +.++ 
T Consensus       242 ~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L-~~~g-  317 (389)
T 1o4s_A          242 NGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERL-KKMG-  317 (389)
T ss_dssp             EESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHH-HHTT-
T ss_pred             eechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH-HhcC-
Confidence             4889998 88 899999999998888776444556777888887777666532 2456788888999999999 6653 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                       +....+..++++|+.++ .  +..++.++|. ++||.+.++.    ++++|++++  .+++++++++++|+++++
T Consensus       318 -~~~~~~~~~~~~~~~~~-~--~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          318 -VKFVEPEGAFYLFFKVR-G--DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             -CCCCCCSBSSEEEEECS-S--CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             -CeeecCCcceEEEEeCC-C--CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence             22222334677888876 2  4678999997 8899998752    469999966  499999999999988764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.92  E-value=4.1e-24  Score=178.82  Aligned_cols=214  Identities=11%  Similarity=0.080  Sum_probs=156.4

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-c
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-I   76 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~   76 (242)
                      +..+|++     |+++ +...++++++|++++++|++|.+. +.+.+.++++.|++ |+++|+||+|+++.. +.... .
T Consensus       132 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~  208 (363)
T 3ffh_A          132 VREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHE  208 (363)
T ss_dssp             EEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCG
T ss_pred             EEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHH
Confidence            4456666     7777 444456899999999999999655 54556666666665 999999999998765 43221 1


Q ss_pred             ccCCCCCC---EEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Q psy6548          77 HYEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMG  151 (242)
Q Consensus        77 ~~~~~~~~---~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~  151 (242)
                      ...+...+   +.++||.++ +| +|+||+++++++++.+.+..  .+++.++++++++.++++..+. ++..+++++++
T Consensus       209 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  285 (363)
T 3ffh_A          209 KLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGI  285 (363)
T ss_dssp             GGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            22122222   334889999 89 89999999999988887643  3677889999888888863321 34567778888


Q ss_pred             HHHHHHHHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHH
Q psy6548         152 EIFRSELRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREG  226 (242)
Q Consensus       152 ~~l~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~  226 (242)
                      +++++.| +. .+   ....++.+.++++.++.   +..++.+.|.++||.+.++.    ++++|++++   ++++++++
T Consensus       286 ~~l~~~l-~~~~g---~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~  355 (363)
T 3ffh_A          286 KQYEAFA-KRFEK---VKLYPANGNFVLIDLGI---EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAV  355 (363)
T ss_dssp             HHHHHHH-HHCTT---CEECCCCSSEEEEECSS---CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHH
T ss_pred             HHHHHHH-hhCCC---ceECCCCCeEEEEECCC---CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHH
Confidence            8888888 55 33   11224456788888865   47889999999999998863    689999954   99999999


Q ss_pred             HHHHHHH
Q psy6548         227 LDIIINT  233 (242)
Q Consensus       227 ~~~l~~~  233 (242)
                      ++.|+++
T Consensus       356 ~~~l~~~  362 (363)
T 3ffh_A          356 IALLEKL  362 (363)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.92  E-value=2.2e-24  Score=183.97  Aligned_cols=219  Identities=17%  Similarity=0.150  Sum_probs=159.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCC----CCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDV----RPD   84 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~----~~~   84 (242)
                      |+++ +...++++++|++++++|++|.+. +++.+++|+++|++||+++|+||+|+++.+.+.. ..+..+..    ...
T Consensus       163 d~~~l~~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  241 (422)
T 3fvs_A          163 DPMELAGKFTSRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT  241 (422)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEE
T ss_pred             CHHHHHhhcCCCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEE
Confidence            4555 444456899999999999999655 7788999999999999999999999987655532 12222221    122


Q ss_pred             EEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-------Hh--ccHHHHHHHHHHHH
Q psy6548          85 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-------LE--ENMIENAYKMGEIF  154 (242)
Q Consensus        85 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-------~~--~~~~~~~~~~~~~l  154 (242)
                      +.++||.++ +| +|+||+++++++++.+.......+++.+++++.++.++++..       ..  ++..++++++++++
T Consensus       242 ~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  320 (422)
T 3fvs_A          242 IGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM  320 (422)
T ss_dssp             EEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             EecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHH
Confidence            334889998 89 999999999998888776555667788899998888887741       11  33567777788888


Q ss_pred             HHHHHhhcCCCCCCeEeeeceeEEEEecCCch------------hHHHHHHHHH-HCCceeccC-----------CCCEE
Q psy6548         155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL------------EVYDVCIKMK-DAGLVTKPI-----------SNNII  210 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~-~~gi~~~~~-----------~~~~l  210 (242)
                      ++.| +.++  +....+..++++|+.++....            ...++.+.|+ ++||.+.++           +.+++
T Consensus       321 ~~~L-~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~i  397 (422)
T 3fvs_A          321 IRSL-QSVG--LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYI  397 (422)
T ss_dssp             HHHH-HTTT--CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEE
T ss_pred             HHHH-HHcC--CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeE
Confidence            8888 5553  222345567888888765210            0457777765 479999773           36899


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         211 RLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      |+++  ..+++++++++++|++++++
T Consensus       398 Ris~--~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          398 RFCF--VKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             EEEC--CCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEe--cCCHHHHHHHHHHHHHHHhh
Confidence            9994  45999999999999998764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.92  E-value=1.4e-24  Score=183.59  Aligned_cols=205  Identities=13%  Similarity=0.041  Sum_probs=150.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-ccccc-c-------cCCCCCCEEEeec
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLAI-H-------YEDVRPDIVILGK   90 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~-~-------~~~~~~~~~~~sK   90 (242)
                      .+++++++++++|++|.+ .+.+.+++|+++|++||+++|+||+|+++...+ .+... .       ..+....+.++||
T Consensus       167 ~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  245 (396)
T 3jtx_A          167 KRTKLVFVCSPNNPSGSV-LDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSK  245 (396)
T ss_dssp             HTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTT
T ss_pred             cCcEEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccc
Confidence            478999988889999965 456779999999999999999999999876655 22221 1       1233334555899


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      +++ +| +|+||+++++++++.+.......+++.+++++.++.++++..+. ++..++++++++.+.+.| +...   ..
T Consensus       246 ~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~---~~  320 (396)
T 3jtx_A          246 RSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPIL-QQVF---DV  320 (396)
T ss_dssp             TSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-TTTS---CC
T ss_pred             ccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhcC---Cc
Confidence            987 78 99999999999988887654555677888998888877763111 234556666677777777 4431   12


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ..+..++++|+.++..  +..++.+.|. ++||.+.|+            +.+++|++++  .+++++++++++|++++
T Consensus       321 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          321 KLPDASFYIWLKVPDG--DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             CCCSSSSEEEEECTTS--CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             cCCCeeEEEEEECCCC--CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence            2334578899998763  5778888886 469999763            3589999965  49999999999998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.92  E-value=3.1e-25  Score=188.56  Aligned_cols=210  Identities=15%  Similarity=0.121  Sum_probs=155.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC----CCCCCEEEeecccc-
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE----DVRPDIVILGKALS-   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~----~~~~~~~~~sK~~~-   93 (242)
                      ++++++|++++++|++|.+ .+.+++++|+++|++||+++|+||+|+++...|........    +....+.++||+++ 
T Consensus       179 ~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~  257 (404)
T 2o1b_A          179 IDKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNM  257 (404)
T ss_dssp             HHHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTC
T ss_pred             ccCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccC
Confidence            3578999998889999965 56789999999999999999999999887544432111111    11122445899998 


Q ss_pred             CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548          94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR  171 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  171 (242)
                      +| +|+||+++++++++.+.......+++.+++++.++.++++....  ++..+.++++++.+++.| ++++  +....+
T Consensus       258 ~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~~  333 (404)
T 2o1b_A          258 SG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAML-AKAD--LPFVHA  333 (404)
T ss_dssp             GG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHTT--CCEECC
T ss_pred             ch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhcC--CeecCC
Confidence            88 89999999999988887644455667888998888888775321  345667788888888888 5553  222223


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..++++|+.++.. .+..++.+.|. ++||.+.++      +.+++|++++.  +++++++++++|++++++
T Consensus       334 ~~g~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          334 KGGIYVWLETPPG-YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             CBSSEEEEECCTT-CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             CcceEEEEeCCCC-CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            3467789988754 46778899987 579999875      25799999764  788999999999887654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.92  E-value=1.4e-24  Score=182.42  Aligned_cols=202  Identities=13%  Similarity=0.056  Sum_probs=150.6

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-c--------cCCCCCCEEEeec
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-H--------YEDVRPDIVILGK   90 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~--------~~~~~~~~~~~sK   90 (242)
                      +++++++++.++|++|. +++.+.+++|+++|++||+++|+||+|.++...+..... .        ..+....+.++||
T Consensus       153 ~~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  231 (376)
T 3ezs_A          153 QEVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSK  231 (376)
T ss_dssp             HHCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTT
T ss_pred             cCCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchh
Confidence            36788888888999995 456678999999999999999999999987655532221 1        2233333455899


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      ++| +| +|+||+++++++++.+.......+++.+++++.++.++++..+. ++..++++++++.+.+.| +    .+. 
T Consensus       232 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~----~~~-  304 (376)
T 3ezs_A          232 RSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIF-K----NTL-  304 (376)
T ss_dssp             TTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHS-T----TCC-
T ss_pred             ccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-c----CCC-
Confidence            997 88 99999999999988887655556778889998888877763211 234455555555565555 3    222 


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                       .+..++++|+.++    +..++.+.|.+ +||.+.++        +.+++|++++  .+++++++++++|++++++
T Consensus       305 -~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          305 -IYPYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             -CCSBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred             -CCCcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence             4567788999886    35788899988 89999763        4689999965  4999999999999998764

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.92  E-value=1.8e-25  Score=187.83  Aligned_cols=226  Identities=12%  Similarity=0.076  Sum_probs=160.5

Q ss_pred             ccccCCC---Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-cc-cccc
Q psy6548           4 QFPVKSK---QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KL-LAIH   77 (242)
Q Consensus         4 ~~~~~~~---d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~-~~~~   77 (242)
                      +..+|.+   |+++ +...+.++++++++.++|++|. ..+.+.+++|+++|++||+++|+||+|+++...| .. ..+.
T Consensus       129 ~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  207 (377)
T 3fdb_A          129 GIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGV  207 (377)
T ss_dssp             EEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGS
T ss_pred             EEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHH
Confidence            3455655   6777 3332334778888888999995 4566779999999999999999999999876655 21 1111


Q ss_pred             c---CCCCCCEEEeecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHH
Q psy6548          78 Y---EDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKM  150 (242)
Q Consensus        78 ~---~~~~~~~~~~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~  150 (242)
                      .   .+....+.++||+++ +| +|+||++. ++++++.+.......+++.+++++.++.++++....  ++..++++++
T Consensus       208 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  286 (377)
T 3fdb_A          208 SDTAASVCITITAPSKAWNIAG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNN  286 (377)
T ss_dssp             CHHHHHHEEEEECSTTTTTCGG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HccCCCcEEEEEeChHhccCcc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1   111123445889997 88 89998775 788888877655555678899999888888875322  4567788888


Q ss_pred             HHHHHHHHHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHH
Q psy6548         151 GEIFRSELRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQE  222 (242)
Q Consensus       151 ~~~l~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~  222 (242)
                      ++++++.| +. ++. +....+..+++.|+.++... ...++.+.|+++ ||.+.++      +++++|++++  .++++
T Consensus       287 ~~~l~~~L-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~  361 (377)
T 3fdb_A          287 HDFLLHEI-PKRIPG-AKITPMQATYLMWIDFRDTT-IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREV  361 (377)
T ss_dssp             HHHHHHHH-HHHSTT-CEECCCSBCSEEEEECTTSC-CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHH
T ss_pred             HHHHHHHH-HhhCCC-ceEecCCeeEEEEEECcccC-CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHH
Confidence            99999999 55 442 22222344566788887642 225677777766 9999875      2689999966  58999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINT  236 (242)
Q Consensus       223 i~~~~~~l~~~l~~  236 (242)
                      +++++++|++++++
T Consensus       362 i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          362 LEEAIDRMAKAVSH  375 (377)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.92  E-value=3.5e-24  Score=181.47  Aligned_cols=223  Identities=13%  Similarity=0.118  Sum_probs=159.5

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCC--CCC-
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDV--RPD-   84 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~--~~~-   84 (242)
                      |+++  +.+.++++++|+++.++|++|. +++.+++++|+++|++||+++|+||+|+++...|.. .....+..  .++ 
T Consensus       152 d~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  230 (399)
T 1c7n_A          152 DFQKLEKLSKDKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT  230 (399)
T ss_dssp             CHHHHHHHHTCTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE
T ss_pred             cHHHHHHHhccCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcE
Confidence            5666  4455468999999889999995 557789999999999999999999999987655532 12222210  122 


Q ss_pred             --EEEeecccc-CCccchheeEeC-hhhhhccCCCCCCCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Q psy6548          85 --IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        85 --~~~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~-~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~  157 (242)
                        +.++||+++ +| +|+||++++ +++++.+.+....+++ +.+++++.++.++++....  +...+.++++++++++.
T Consensus       231 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  309 (399)
T 1c7n_A          231 ITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDF  309 (399)
T ss_dssp             EEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence              334889999 89 899999986 5688877654344444 5688888888877764211  34566778888888888


Q ss_pred             HHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHH
Q psy6548         158 LRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       158 l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      | ++ ++. +....+..+++.|+.++..+.+..++.+.|. ++||.+.++      +++++|++++.  +++++++++++
T Consensus       310 L-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l~~  385 (399)
T 1c7n_A          310 F-EVNHPE-IKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSSVIQESLER  385 (399)
T ss_dssp             H-HHHCTT-SBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHH
T ss_pred             H-HhhCCC-CeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHHHHHHHHHH
Confidence            8 55 542 2222233456668888752135778999998 689999875      35799999664  58899999999


Q ss_pred             HHHHHHHHhh
Q psy6548         230 IINTINTMAA  239 (242)
Q Consensus       230 l~~~l~~~~~  239 (242)
                      |+++++++.+
T Consensus       386 l~~~l~~~~~  395 (399)
T 1c7n_A          386 LNKALKDLKN  395 (399)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.92  E-value=6.4e-25  Score=184.27  Aligned_cols=217  Identities=16%  Similarity=0.168  Sum_probs=159.1

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~   81 (242)
                      +..+| .|+++ +...+.++++|++++++|++|.+.+    .+ |+++|++||+++|+||+|+++...|.......+ +.
T Consensus       137 ~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  210 (370)
T 2z61_A          137 PVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDEN  210 (370)
T ss_dssp             EEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             EEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCC
Confidence            34455 56777 4433457899999999999997766    33 999999999999999999876554432222222 11


Q ss_pred             -CCCEE--Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-HHh--ccHHHHHHHHHHHH
Q psy6548          82 -RPDIV--ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-ILE--ENMIENAYKMGEIF  154 (242)
Q Consensus        82 -~~~~~--~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-~~~--~~~~~~~~~~~~~l  154 (242)
                       ..+++  ++||+++ +| +|+||+++++++++.+......++++.+++++.++.++++. ...  ++..++++++++++
T Consensus       211 ~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  289 (370)
T 2z61_A          211 LEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLV  289 (370)
T ss_dssp             CSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence             22333  4889998 88 89999999999988887654555667888888888877765 222  44667788889999


Q ss_pred             HHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHH
Q psy6548         155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                      .+.| +.++  +....+..++++|+.++.   +..++.++|. ++||.+.++      +.+++|++++  ++++++++++
T Consensus       290 ~~~L-~~~g--~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~  361 (370)
T 2z61_A          290 LKYV-KDFG--WEVNNPIGAYYVFPNIGE---DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGL  361 (370)
T ss_dssp             HHHH-HHTT--CBCCCCCBTTEECCBCSS---CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHH
T ss_pred             HHHH-HHcC--CeecCCCcceEEEEecCC---CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHH
Confidence            9999 6553  222223446777877764   4678999998 789999875      2678999977  6999999999


Q ss_pred             HHHHHHHH
Q psy6548         228 DIIINTIN  235 (242)
Q Consensus       228 ~~l~~~l~  235 (242)
                      ++|+++++
T Consensus       362 ~~l~~~l~  369 (370)
T 2z61_A          362 ERIKEFLN  369 (370)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99988764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.92  E-value=3e-24  Score=183.69  Aligned_cols=209  Identities=16%  Similarity=0.138  Sum_probs=153.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c---cccC----CCCCC----EEE
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A---IHYE----DVRPD----IVI   87 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~---~~~~----~~~~~----~~~   87 (242)
                      .++++|++++++|++|. +.+.+++++|+++|++||+++|+||+|.++...+..+ .   ....    ++.+|    +.+
T Consensus       187 ~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s  265 (428)
T 1iay_A          187 IKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS  265 (428)
T ss_dssp             CCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred             CceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEec
Confidence            47899898888999995 5577899999999999999999999998865443221 1   1110    12255    344


Q ss_pred             eecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHh
Q psy6548          88 LGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---E--ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~--~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +||+++ +| +|+||+++ ++++++.+..  ....++.+++++.++.++++...   .  ++..++++++++++++.| +
T Consensus       266 ~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~  341 (428)
T 1iay_A          266 LSKDMGLPG-FRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGL-E  341 (428)
T ss_dssp             STTTSSCGG-GCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             chhhcCCCC-ceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            899998 89 89999998 6778777664  22345678888888877776432   1  346677788888888989 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHHC-CceeccCC------CCEEEEeccCcCCHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKDA-GLVTKPIS------NNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~-gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      .++  +.......|+++|++++...     ....++.+.|.++ ||.+.++.      ++++|++++ ..++++++++++
T Consensus       342 ~~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~  418 (428)
T 1iay_A          342 VVG--IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALA  418 (428)
T ss_dssp             HTT--CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHH
T ss_pred             hcC--CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHH
Confidence            653  22112236788999887521     1456789999987 99998752      578999987 579999999999


Q ss_pred             HHHHHHHH
Q psy6548         229 IIINTINT  236 (242)
Q Consensus       229 ~l~~~l~~  236 (242)
                      +|++++++
T Consensus       419 ~l~~~l~~  426 (428)
T 1iay_A          419 RIRRFVGV  426 (428)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.92  E-value=4.2e-24  Score=180.39  Aligned_cols=218  Identities=18%  Similarity=0.196  Sum_probs=156.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE--E
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV--I   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--~   87 (242)
                      |+++ +...+.++++|++.+++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+....+..+.-..+++  +
T Consensus       153 d~~~l~~~l~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s  231 (385)
T 1b5p_A          153 DPERVRRAITPRTKALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNG  231 (385)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEE
T ss_pred             CHHHHHHhcCCCCEEEEEeCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEe
Confidence            4555 4444557888888888999995 5577889999999999999999999998764433211222221112232  3


Q ss_pred             eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV---ILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~---~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +||.++ +| +|+||+++++++++.+.+....++++.+.+++.++.++++.   ...  ++..+.++++++.+.+.| ++
T Consensus       232 ~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~  309 (385)
T 1b5p_A          232 AAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGL-TA  309 (385)
T ss_dssp             STTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             chhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            889998 88 99999999998888776543445567788888887777753   222  345677888888899999 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++  +....+..+++.|+.++..+.+..++.++|.++||.+.++.    ++++|+++.  .+++++++++++|+++++
T Consensus       310 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          310 LG--LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             HT--CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             CC--CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            53  22223445677888876322467889999999999998762    579999954  799999999999887654

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.92  E-value=5.5e-24  Score=182.18  Aligned_cols=221  Identities=14%  Similarity=0.138  Sum_probs=161.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIV--   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~--   86 (242)
                      |+++ +...+.++++++++.++|++|. .++.+.+++|+++|++||+++|+||+|.+|++.+..+ ....++..++++  
T Consensus       180 d~~~l~~~l~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~  258 (427)
T 3dyd_A          180 DLKQLEYLIDEKTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSC  258 (427)
T ss_dssp             CHHHHHSSCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEE
T ss_pred             CHHHHHHHhccCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEE
Confidence            5666 4444557888888888999995 5677889999999999999999999999887666432 233334444555  


Q ss_pred             -Eeecccc-CCccchheeEeC-------hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Q psy6548          87 -ILGKALS-GGLYPISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF  154 (242)
Q Consensus        87 -~~sK~~~-~g~~~~g~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l  154 (242)
                       ++||.|+ +| +|+||++++       +++++.+.... ..+++.+++++.++.++++....   ++..++++++++.+
T Consensus       259 ~S~sK~~~~~G-~riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l  336 (427)
T 3dyd_A          259 GGLAKRWLVPG-WRLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLC  336 (427)
T ss_dssp             EESTTTSSCGG-GCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccCCCcC-cceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence             5899987 78 999999887       35665554321 12567888888888888774211   34567788888888


Q ss_pred             HHHHHhhcCCCCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHH
Q psy6548         155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~  225 (242)
                      .+.| +.++. +....+..++++|+.++..    ..+..+++++|. ++||.+.++    .++++|+++  ..+++++++
T Consensus       337 ~~~L-~~~~g-~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~  412 (427)
T 3dyd_A          337 YGAL-AAIPG-LRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLE  412 (427)
T ss_dssp             HHHH-HHSTT-EEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHH
T ss_pred             HHHH-hcCCC-ceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHH
Confidence            8888 66532 2112245577888887631    134678888886 789999876    368999995  479999999


Q ss_pred             HHHHHHHHHHHHh
Q psy6548         226 GLDIIINTINTMA  238 (242)
Q Consensus       226 ~~~~l~~~l~~~~  238 (242)
                      ++++|+++++++.
T Consensus       413 ~l~~l~~~l~~~~  425 (427)
T 3dyd_A          413 ACSRIQEFCEQHY  425 (427)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.92  E-value=3.6e-24  Score=181.35  Aligned_cols=216  Identities=16%  Similarity=0.177  Sum_probs=155.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh------hCCEEEEeccccccCccCccc--ccccCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFIADEVQTGLGRTGKLL--AIHYEDV   81 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~------~~~~li~De~~~~~~~~g~~~--~~~~~~~   81 (242)
                      |+++ +...+.+++++++++++|++|.+ .+.+.+++|+++|++      ||+++|+||+|+++...+...  .....+.
T Consensus       161 d~~~l~~~l~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  239 (398)
T 3ele_A          161 DFDALEERINAHTRGVIINSPNNPSGTV-YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDN  239 (398)
T ss_dssp             CHHHHHHTCCTTEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSS
T ss_pred             CHHHHHHHhCcCCCEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCC
Confidence            5666 44445689999999999999964 566779999999999      999999999999876555322  1122222


Q ss_pred             CCCEEEeecccc-CCccchheeEeChhhhh------ccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          82 RPDIVILGKALS-GGLYPISAVLADDEVMG------TLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        82 ~~~~~~~sK~~~-~g~~~~g~~~~~~~~~~------~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                      ...+.++||+++ +| +|+||+++++++++      .+... ....+++.+++++.++.+.++   .....+++++++++
T Consensus       240 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~  315 (398)
T 3ele_A          240 TLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDL  315 (398)
T ss_dssp             EEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHH
T ss_pred             eEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence            222334889999 99 99999999877543      22111 112344566677666554443   44457888999999


Q ss_pred             HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      +++.| +.++  +....+..++++|+.++..  +..++.+.|.++||.+.++.    ++++|++++  .+++++++++++
T Consensus       316 l~~~L-~~~g--~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~  388 (398)
T 3ele_A          316 LYEGL-TRIG--YHCFKPDGAFYMFVKALED--DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPA  388 (398)
T ss_dssp             HHHHH-HHHT--CCEECCSBSSEEEEECSSS--CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHH
T ss_pred             HHHHH-HHcC--CeecCCCeeEEEEEEcCCC--CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHH
Confidence            99999 6654  2222234567789988763  67889999999999998763    689999964  799999999999


Q ss_pred             HHHHHHHHh
Q psy6548         230 IINTINTMA  238 (242)
Q Consensus       230 l~~~l~~~~  238 (242)
                      |+++++++.
T Consensus       389 l~~~l~~~~  397 (398)
T 3ele_A          389 FEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998753

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.91  E-value=3.4e-24  Score=179.61  Aligned_cols=211  Identities=12%  Similarity=0.086  Sum_probs=157.1

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      |+++  +.+.++++++|++++++|++|.+. +.+.+++|+++|++|  |+++|+||+|++|+..+........+....+.
T Consensus       145 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~  223 (367)
T 3euc_A          145 DRGAMLAAMAEHQPAIVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMR  223 (367)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEE
T ss_pred             CHHHHHHHhhccCCCEEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEe
Confidence            5666  334444788999999999999654 667899999999999  99999999998875333222223333333445


Q ss_pred             EeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          87 ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        87 ~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      ++||+..+| +|+||+++++++++.+...  ..+++.+++++.++.++++.... ++..++++++++++.+.| +.++. 
T Consensus       224 s~sK~~~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~g-  298 (367)
T 3euc_A          224 TVSKLGLAG-IRLGYVAGDPQWLEQLDKV--RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGM-AAHGG-  298 (367)
T ss_dssp             ECCCTTSCS-CCEEEEEECHHHHHHHGGG--CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-HTSTT-
T ss_pred             cchhhcccc-cCceeeeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-
Confidence            589993388 8999999999998888763  34567889999888888775221 446677888888888888 66632 


Q ss_pred             CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      + ...+..+.++++.++    +..++.+.|.++||.+.++.      .+++|++++   ++++++++++.|+++++
T Consensus       299 ~-~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          299 V-TVFPSAANFLLARVP----DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             C-EECCCSSSEEEEECS----CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             c-EECCCCCeEEEEECC----CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            2 233456778888876    36788999999999998753      589999943   99999999999988753

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.91  E-value=1.3e-23  Score=178.94  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=159.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc--cccCCCCCCEEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA--IHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~--~~~~~~~~~~~~   87 (242)
                      |+++ +  .+++++++++++++|++|. +.+.+.+++|+++|++||+++|+||+|..+........  ....+....+.+
T Consensus       171 d~~~l~--~~~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s  247 (417)
T 3g7q_A          171 DFEHLH--IGEETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMS  247 (417)
T ss_dssp             CGGGCC--CCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEE
T ss_pred             CHHHhc--cccCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEe
Confidence            4454 4  4567999999999999995 55667799999999999999999999964311110000  011111122445


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhhc
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +||..++| +|+||+++++++++.+.......+++.+++++.++.+.++...-     +.+.+.++++++.+++.|++.+
T Consensus       248 ~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  326 (417)
T 3g7q_A          248 LSKLGLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYL  326 (417)
T ss_dssp             SGGGTCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhccCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89964588 99999999999998887655566677788888877776653211     1245566778888888884445


Q ss_pred             CC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------------CCEEEEeccCcCCHHHHHHHHH
Q psy6548         163 SP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------------NNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       163 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +. .+....+..|+++|+.++....+..++.+.|.++||.+.++.             .+++|++++.  ++++++++++
T Consensus       327 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~  404 (417)
T 3g7q_A          327 SEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVK  404 (417)
T ss_dssp             CTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHH
T ss_pred             ccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHH
Confidence            53 222233456889999988622578899999999999998641             4689999764  9999999999


Q ss_pred             HHHHHHHHHhh
Q psy6548         229 IIINTINTMAA  239 (242)
Q Consensus       229 ~l~~~l~~~~~  239 (242)
                      +|+++++++.+
T Consensus       405 ~l~~~l~~~~~  415 (417)
T 3g7q_A          405 ILAEEIERAWR  415 (417)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.91  E-value=8.9e-23  Score=171.72  Aligned_cols=219  Identities=15%  Similarity=0.142  Sum_probs=163.6

Q ss_pred             CChhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+. ++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+.+. ..  .....  ...|++
T Consensus       132 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~-~~--~~~~~--~~~di~  202 (386)
T 2dr1_A          132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGG-AD--IKFDK--WGLDVV  202 (386)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTT-BC--CCTTT--TTCSEE
T ss_pred             CCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccC-cc--ccccc--cCCcEE
Confidence            45666  3443 467899999999999998765    8999999999999999999997331 11  12222  245777


Q ss_pred             Eee--ccccCCccchheeEeChhhhhccCCC------------------CCCCCCCCCHHHHHHHHHHHHHHHhc----c
Q psy6548          87 ILG--KALSGGLYPISAVLADDEVMGTLVPG------------------THGSTYGGNPLACKLAMTALDVILEE----N  142 (242)
Q Consensus        87 ~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~------------------~~~~~~~~~~~~~~~a~a~l~~~~~~----~  142 (242)
                      ++|  |+++++ .++|++++++++++.+.+.                  ....+++.++++++++.++++.+...    +
T Consensus       203 ~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~  281 (386)
T 2dr1_A          203 FSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK  281 (386)
T ss_dssp             EEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             EEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            755  999976 5689999999888776431                  01334567788888888888876543    5


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCe-EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCc
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPV-VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALN  217 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~  217 (242)
                      +.++++++++++++.| +.++-..... ....+.++++.++.. .+..++.++|.++||.+.++    ..+.+|++++..
T Consensus       282 ~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~  359 (386)
T 2dr1_A          282 WLEMYEKRAKMVREGV-REIGLDILAEPGHESPTITAVLTPPG-IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGY  359 (386)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCCBSSCTTCBCSSEEEEECCTT-CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCeeCcCccccCCceEEEEcCCC-CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCC
Confidence            6788889999999999 6553211111 011467888888743 46788999999999999875    357999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         218 ITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       218 ~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++++++++++++|+++++++..+
T Consensus       360 ~~~~~i~~~~~~l~~~~~~~~~~  382 (386)
T 2dr1_A          360 MKFEDIQEMLDNLREVINELKKQ  382 (386)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCC
Confidence            89999999999999999887544

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.91  E-value=1.5e-23  Score=175.25  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=150.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~   88 (242)
                      |+++ +...+ +++++++++++|++|.+ .+.+++++++++|+ ||+++|+||+|.+++........ +.++....+.++
T Consensus       136 d~~~l~~~i~-~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~  212 (356)
T 1fg7_A          136 DLQGISDKLD-GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTL  212 (356)
T ss_dssp             CHHHHHTSCT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEES
T ss_pred             CHHHHHHHhc-CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecc
Confidence            4565 33334 88999999999999955 56788999999999 99999999999887532111111 212222223448


Q ss_pred             ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      ||+++ +| +|+||+++++++++.+.+  ...+++.|++++.++.++++...   -++..++++++++++.+.| ++++.
T Consensus       213 sK~~g~~G-~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~  288 (356)
T 1fg7_A          213 SKAFALAG-LRCGFTLANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAAL-KEIPC  288 (356)
T ss_dssp             SSTTCCGG-GCCEEEEECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHSTT
T ss_pred             hHhhcCch-hhhEEEEeCHHHHHHHHH--hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            99998 89 999999999998887765  23455788888888888876432   2345677778888888888 66542


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-CC----CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-IS----NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~----~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                       +....++.++++|+.++    +..++.+.|.++||.+++ +.    ++++|++++   +++++++++++|++
T Consensus       289 -~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          289 -VEQVFDSETNYILARFK----ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA  353 (356)
T ss_dssp             -EEEECCCSSSEEEEEET----THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred             -ceEECCCCCeEEEEECC----CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence             11222446788898886    357899999999999998 42    368999954   78999999998865

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.91  E-value=1.1e-23  Score=178.29  Aligned_cols=222  Identities=15%  Similarity=0.232  Sum_probs=164.5

Q ss_pred             ccccCCCChhh--hcCCCC---CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCccccc
Q psy6548           4 QFPVKSKQVPA--KLKSNP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~---~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~   76 (242)
                      ++.+|+.|+++  +.+.+.   ++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+.+  +..+... .
T Consensus       151 ~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~  225 (398)
T 3a2b_A          151 VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-A  225 (398)
T ss_dssp             EEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-H
T ss_pred             eEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-H
Confidence            45677788887  444332   7899999999999997775    999999999999999999999643  3333322 2


Q ss_pred             ccCCCC--CCEE--EeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHH
Q psy6548          77 HYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMIENAYK  149 (242)
Q Consensus        77 ~~~~~~--~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~  149 (242)
                      ..++..  +|++  ++||+++.  .+ ||+++++++++.+.+..  ...+...++..++++.++++..+. ++..+++++
T Consensus       226 ~~~~~~~~~di~~~s~sK~~~~--~G-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~  302 (398)
T 3a2b_A          226 SHFGLNDDVDLIMGTFSKSLAS--LG-GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK  302 (398)
T ss_dssp             HHHTCGGGCSEEEEESSSTTCS--SC-EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred             hhcCCCcCCeEEEecccccccC--CC-cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            233432  4677  58899983  12 88999998888776521  233444556555566677776543 467888999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHH
Q psy6548         150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQE  222 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~  222 (242)
                      +++++++.| ++++-..   ..+.|+++|+.++.. .+..++.+.|.++||.+.++.       .+++|++++..+++++
T Consensus       303 ~~~~l~~~L-~~~g~~~---~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~  377 (398)
T 3a2b_A          303 NTDYAKAQL-LDHGFDL---GATESPILPIFIRSN-EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQ  377 (398)
T ss_dssp             HHHHHHHHH-HHTTCCB---CSCCSSEEEEECCCH-HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHH
T ss_pred             HHHHHHHHH-HhcCCCc---CCCCCCEEEEEcCCH-HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHH
Confidence            999999999 6654211   123478899988754 567889999999999998752       4789999888889999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy6548         223 LREGLDIIINTINTMA  238 (242)
Q Consensus       223 i~~~~~~l~~~l~~~~  238 (242)
                      +++++++|+++++++.
T Consensus       378 i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          378 IDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999988753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.91  E-value=3.4e-24  Score=183.35  Aligned_cols=225  Identities=17%  Similarity=0.114  Sum_probs=160.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHH-HhhCCEEEEeccccccCccCcc--c-c-cc-----
Q psy6548          11 QVPA--KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQTGLGRTGKL--L-A-IH-----   77 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~-~~~~~~li~De~~~~~~~~g~~--~-~-~~-----   77 (242)
                      |+++  +.+.++++++|+++| ++|++|. +.+.+.+++|+++| ++||+++|+||+|.++...+..  . . ..     
T Consensus       168 d~~~l~~~l~~~~~~~v~~~p~~~NPtG~-~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  246 (427)
T 3ppl_A          168 DMDAVEELVKNPQVKGMWVVPVFSNPTGF-TVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA  246 (427)
T ss_dssp             CHHHHHHHTTSTTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred             CHHHHHHHHhcCCCeEEEECCCCCCCCCc-cCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhcc
Confidence            5555  445467899999885 7888885 44567799999999 9999999999999874333221  1 1 11     


Q ss_pred             -cCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHH
Q psy6548          78 -YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI---LE--ENMIENAYKMG  151 (242)
Q Consensus        78 -~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~---~~--~~~~~~~~~~~  151 (242)
                       ..+....+.+|||++++| +|+||+++++++++.+.......+++.+++.+.++.++++..   ..  +...+.+++++
T Consensus       247 ~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (427)
T 3ppl_A          247 GNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF  325 (427)
T ss_dssp             TCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence             222223344599997789 999999999999888876545556778888888777666531   11  23445566666


Q ss_pred             HHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccCcCC
Q psy6548         152 EIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPALNIT  219 (242)
Q Consensus       152 ~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~~~t  219 (242)
                      +.+.+.|.+.++.  ......+..|+++|+.++..  +..++.+.|.++||.+.++          +.+++|+++... +
T Consensus       326 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~  402 (427)
T 3ppl_A          326 NKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-P  402 (427)
T ss_dssp             HHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-C
T ss_pred             HHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-C
Confidence            7777777443432  12122344688999999874  5788899999999999882          368999998655 8


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q psy6548         220 EQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++++++++++|+++++++..+
T Consensus       403 ~~~i~~~~~~l~~~l~~~~~~  423 (427)
T 3ppl_A          403 VEELEVAMDGVATCVLLAAAE  423 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999886543

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.91  E-value=2.2e-24  Score=182.02  Aligned_cols=215  Identities=12%  Similarity=0.116  Sum_probs=155.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccc----cCCCCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIH----YEDVRPD   84 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~----~~~~~~~   84 (242)
                      |+++ +...++++++|++++++|++|.+ .+.+++++|+++|++||+++|+||+|+++...|... .+.    ..+....
T Consensus       152 d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~  230 (386)
T 1u08_A          152 DWQEFAALLSERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVA  230 (386)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEE
T ss_pred             CHHHHHHhhcccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEE
Confidence            5566 33335689999999999999955 567899999999999999999999998875544311 111    1222233


Q ss_pred             EEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          85 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        85 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +.++||+++ +| +|+||+++++++++.+.+.....+++.+++++.++.++++....  ++..++++++++++.+.| ++
T Consensus       231 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  308 (386)
T 1u08_A          231 VSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL-NE  308 (386)
T ss_dssp             EEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHT-TS
T ss_pred             EecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            445889999 88 89999999999888877544445677788888887777775321  345677777788888777 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      ++  +....+..++++|+.++... .+..++.++|. ++||.+.++        +++++|++++  .+++++++++++|+
T Consensus       309 ~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~  384 (386)
T 1u08_A          309 SR--LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLR  384 (386)
T ss_dssp             SS--CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHT
T ss_pred             CC--CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHh
Confidence            43  22122334788999887521 24678888887 689999764        3578999965  58999999999885


Q ss_pred             H
Q psy6548         232 N  232 (242)
Q Consensus       232 ~  232 (242)
                      +
T Consensus       385 ~  385 (386)
T 1u08_A          385 Q  385 (386)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.91  E-value=4.5e-24  Score=182.75  Aligned_cols=221  Identities=10%  Similarity=0.021  Sum_probs=155.3

Q ss_pred             ccccCCCChhh--hcC-CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-
Q psy6548           4 QFPVKSKQVPA--KLK-SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-   79 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~-~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-   79 (242)
                      +..+|+++.+.  ..+ ..++++++++++++|++|. +++.+.+++|+++|++||+++|+||+|.++...+........ 
T Consensus       178 ~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~  256 (432)
T 3ei9_A          178 IEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIP  256 (432)
T ss_dssp             CEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGST
T ss_pred             eEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcC
Confidence            45556654322  112 2457888888899999995 567788999999999999999999999887544332222222 


Q ss_pred             CC---CCCEEEeecccc-CCccchheeEeChhh--------hhccCCCCCCCCCCCCHHHHHHHHHHHHH-HH--hccHH
Q psy6548          80 DV---RPDIVILGKALS-GGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDV-IL--EENMI  144 (242)
Q Consensus        80 ~~---~~~~~~~sK~~~-~g~~~~g~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-~~--~~~~~  144 (242)
                      +.   ...+.++||+|+ +| +|+||+++++++        ++.+.........+.+++++.++.++++. ..  .++..
T Consensus       257 ~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  335 (432)
T 3ei9_A          257 GAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVI  335 (432)
T ss_dssp             TGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence            11   122344899999 89 999999998877        44444322233445788888887777642 11  14567


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccCc
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALN  217 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~  217 (242)
                      ++++++++++++.| ++++  +....+..++++|+.++.  .+..++.+.|+++ ||.+.|+      +.+++|++  +.
T Consensus       336 ~~~~~~~~~l~~~L-~~~g--~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~  408 (432)
T 3ei9_A          336 GFYKENTNIIIDTF-TSLG--YDVYGGKNAPYVWVHFPN--QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AF  408 (432)
T ss_dssp             HHHHHHHHHHHHHH-HHTT--CCEEECSSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CC
T ss_pred             HHHHHHHHHHHHHH-HHCC--ceecCCCcceEEEEECCC--CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ec
Confidence            88888999999999 6653  222223467889999884  4677888888765 9999864      46899999  56


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy6548         218 ITEQELREGLDIIINT  233 (242)
Q Consensus       218 ~t~e~i~~~~~~l~~~  233 (242)
                      .+++++++++++|++.
T Consensus       409 ~~~e~l~~~l~rl~~~  424 (432)
T 3ei9_A          409 GHRENILEACRRFKQL  424 (432)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7999999999999764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=2.8e-24  Score=183.93  Aligned_cols=211  Identities=12%  Similarity=0.130  Sum_probs=156.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-----hCCEEEEeccccccCccCccc-cc--ccCCCCCC------EE
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-----YNVLFIADEVQTGLGRTGKLL-AI--HYEDVRPD------IV   86 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-----~~~~li~De~~~~~~~~g~~~-~~--~~~~~~~~------~~   86 (242)
                      ++++++++.++|++|. .++.+++++|+++|++     ||+++|+||+|+++...+... ..  ...+..++      +.
T Consensus       189 ~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  267 (430)
T 2x5f_A          189 DKVIMILNYPNNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLD  267 (430)
T ss_dssp             SEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEE
T ss_pred             CCEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEE
Confidence            7888887777999995 5677899999999999     999999999998875554311 11  11122333      33


Q ss_pred             Eeecccc-CCccchheeEe---ChhhhhccCCCCCC----CCCCCCHHHHHHHHHHHH-HH---Hh-ccHHHHHHHHHHH
Q psy6548          87 ILGKALS-GGLYPISAVLA---DDEVMGTLVPGTHG----STYGGNPLACKLAMTALD-VI---LE-ENMIENAYKMGEI  153 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~---~~~~~~~l~~~~~~----~~~~~~~~~~~~a~a~l~-~~---~~-~~~~~~~~~~~~~  153 (242)
                      ++||+++ +| +|+||+++   ++++++.+......    .+++.+++++.++.++++ ..   +. +...+.++++++.
T Consensus       268 s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  346 (430)
T 2x5f_A          268 GATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEV  346 (430)
T ss_dssp             EHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccCCCCCC-CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHH
Confidence            4889998 88 89999999   98888877653333    567788999988888887 32   21 2356777778888


Q ss_pred             HHHHHHhhc--CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccCCCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         154 FRSELRSRL--SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPISNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       154 l~~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                      +.+.| ++.  ..++....+..++++|+.++ . .+..++.+.|.+ +||.+.+++.+++|++++. .+++++++++++|
T Consensus       347 l~~~L-~~~~~~~g~~~~~~~~g~~~~~~~~-~-~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l  422 (430)
T 2x5f_A          347 TKEVV-YADQYHSHWQAYDFNSGYFMAIKVH-D-VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSI  422 (430)
T ss_dssp             HHHHH-TCGGGTTTEEECCCCBSSEEEEEES-S-SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHH
T ss_pred             HHHHH-HhhCCCCCceeeCCCceEEEEeCCC-C-CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHH
Confidence            88888 421  11121112334677899987 3 467889999998 9999999877899999875 4899999999999


Q ss_pred             HHHHHHH
Q psy6548         231 INTINTM  237 (242)
Q Consensus       231 ~~~l~~~  237 (242)
                      +++++++
T Consensus       423 ~~~l~~~  429 (430)
T 2x5f_A          423 AKAIDDL  429 (430)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998765

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.91  E-value=1.1e-23  Score=175.57  Aligned_cols=218  Identities=16%  Similarity=0.104  Sum_probs=159.9

Q ss_pred             ccccCCC-----Chhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-
Q psy6548           4 QFPVKSK-----QVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-   74 (242)
Q Consensus         4 ~~~~~~~-----d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-   74 (242)
                      +..+|++     |+++  +.+.+ +++++|++++++|++|.+. +.+.+++|+++| +||+++|+||+|.++...+... 
T Consensus       116 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~  193 (354)
T 3ly1_A          116 VTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRS  193 (354)
T ss_dssp             EEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCC
T ss_pred             EEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCC
Confidence            4556766     6777  44443 6899999999999999655 556688888887 7999999999998876554311 


Q ss_pred             cc---ccC-CCCCCEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHH
Q psy6548          75 AI---HYE-DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAY  148 (242)
Q Consensus        75 ~~---~~~-~~~~~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~  148 (242)
                      ..   ... +....+.++||+++ +| +|+||+++++++++.+.....  .++.+++++.++.++++.... ++..++++
T Consensus       194 ~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  270 (354)
T 3ly1_A          194 ISPMITQGAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSND  270 (354)
T ss_dssp             SHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhcCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            11   111 22222334889998 88 999999999999988876433  367888888888887764321 34567788


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec---cCCCCEEEEeccCcCCHHHHHH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK---PISNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~~~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++++++++.| +.++  + ...++.+.++|+.++.   +..++.+.|.++||.+.   +..++++|++++   +++++++
T Consensus       271 ~~~~~l~~~l-~~~~--~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~  340 (354)
T 3ly1_A          271 VSRQILLKAL-EDLK--L-PYLPSEGNFVFHQLVV---PLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQW  340 (354)
T ss_dssp             HHHHHHHHHH-HHHT--C-CBCCCCSSEEEEECSS---CHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHH
T ss_pred             HHHHHHHHHH-HHCC--C-eECCCCceEEEEECCC---CHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHH
Confidence            8888888888 6553  1 1224467788888875   46789999999999988   124689999943   8999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      ++++|++++++
T Consensus       341 ~~~~l~~~l~~  351 (354)
T 3ly1_A          341 VADTMREFRKK  351 (354)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=9.8e-24  Score=181.23  Aligned_cols=226  Identities=14%  Similarity=0.129  Sum_probs=160.8

Q ss_pred             Chhh-hcC---CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccccccCCCCCC
Q psy6548          11 QVPA-KLK---SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAIHYEDVRPD   84 (242)
Q Consensus        11 d~~~-~~~---~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~   84 (242)
                      |+++ +..   .++++++|+++.++|++|. +.+.+.+++|+++|++||+++|+||+|..+.....  .......+....
T Consensus       192 d~~~l~~~l~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~  270 (444)
T 3if2_A          192 DFEALENLPALKEGRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTIL  270 (444)
T ss_dssp             CHHHHHTCHHHHTTCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEE
T ss_pred             CHHHHHHHHHhcCCCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEE
Confidence            5666 443   4678999999888999996 55667799999999999999999999964311100  000011122223


Q ss_pred             EEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHH
Q psy6548          85 IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        85 ~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~~~~~~~~~~~~~l~~~l~  159 (242)
                      +.++||...+| +|+||+++++++++.+.......+++.+++.+.++.++++....     +...+.++++++.+++.|+
T Consensus       271 ~~S~sK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (444)
T 3if2_A          271 CFSLSKIGLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLK  349 (444)
T ss_dssp             EEESTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             EechhhccCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45589985588 99999999999988887655555667788888777766653221     1245566777788888884


Q ss_pred             hhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--------------CCEEEEeccCcCCHHHHH
Q psy6548         160 SRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--------------NNIIRLSPALNITEQELR  224 (242)
Q Consensus       160 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------------~~~lR~~~~~~~t~e~i~  224 (242)
                      +.++. .+....+..++++|+.++....+..++.+.|.++||.+.++.              .+++|++++.  ++++++
T Consensus       350 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~  427 (444)
T 3if2_A          350 QALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLI  427 (444)
T ss_dssp             HHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHH
T ss_pred             HhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHH
Confidence            44543 112222456889999998622578889999999999998641              1589999775  999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy6548         225 EGLDIIINTINTMAAK  240 (242)
Q Consensus       225 ~~~~~l~~~l~~~~~~  240 (242)
                      +++++|+++++++.+.
T Consensus       428 ~~l~~l~~~~~~~~~~  443 (444)
T 3if2_A          428 DGIKVIGEVVRELYDN  443 (444)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999887653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.91  E-value=3.5e-24  Score=182.06  Aligned_cols=220  Identities=14%  Similarity=0.106  Sum_probs=157.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC-CEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP-DIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~-   87 (242)
                      |+++ +...+.++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++...+.......++... ++++ 
T Consensus       163 d~~~l~~~l~~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~  241 (406)
T 1xi9_A          163 DIDDIRKKITDRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMN  241 (406)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEE
T ss_pred             CHHHHHHhhCcCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEe
Confidence            5666 43334478999999999999964 567899999999999999999999998875432222222222112 3443 


Q ss_pred             -eecccc-CCccchheeE--eCh----hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVL--ADD----EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~  157 (242)
                       +||+++ +| +|+||++  +++    ++++.+....... ++.+++++.++.++++...+  +++.++++++++.+++.
T Consensus       242 s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  319 (406)
T 1xi9_A          242 GLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKR  319 (406)
T ss_dssp             ESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCc-cEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence             789998 78 8999998  888    8888776532222 56778888888777753221  34567788888888888


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecC--CchhHHHHHHHHH-HCCceeccCC------CCEEEEeccCcCCHHHHHHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDK--SILEVYDVCIKMK-DAGLVTKPIS------NNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      | +.++. +....+..++++|+.++.  . .+..++.+.|. ++||.+.++.      .+++|++++  .++++++++++
T Consensus       320 L-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~  394 (406)
T 1xi9_A          320 L-NEIPG-ISTTKPQGAFYIFPKIEVGPW-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMD  394 (406)
T ss_dssp             H-HTSTT-EECCCCCBSSEECCEECSCSC-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHH
T ss_pred             H-HhCCC-CeeecCCeeEEEEEecCccCC-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHH
Confidence            8 66532 111122346677777764  2 46788999997 8899998752      678999976  89999999999


Q ss_pred             HHHHHHHHHh
Q psy6548         229 IIINTINTMA  238 (242)
Q Consensus       229 ~l~~~l~~~~  238 (242)
                      +|+++++++.
T Consensus       395 ~l~~~l~~~~  404 (406)
T 1xi9_A          395 RFEKFMKERL  404 (406)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999988753

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.91  E-value=6.1e-24  Score=181.56  Aligned_cols=224  Identities=15%  Similarity=0.086  Sum_probs=158.4

Q ss_pred             Chhh--hcCCCCCEEEEEE-cccccCCCcccCCHHHHHHHHHHHH-hhCCEEEEeccccc--cCccCccc-cc-------
Q psy6548          11 QVPA--KLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCS-QYNVLFIADEVQTG--LGRTGKLL-AI-------   76 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~-e~~~~~~G~~~~~~~~l~~l~~l~~-~~~~~li~De~~~~--~~~~g~~~-~~-------   76 (242)
                      |+++  +.+.++++++|++ ..++|++|. +.+.+++++|+++|+ +||+++|+||+|.+  |+..+... ..       
T Consensus       166 d~~~l~~~l~~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  244 (422)
T 3d6k_A          166 DMGVVRELVKDPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA  244 (422)
T ss_dssp             CHHHHHHHHTSTTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred             CHHHHHHHHhcCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc
Confidence            4555  3444457888884 568888985 667889999999999 99999999999974  54333211 11       


Q ss_pred             ccCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHH
Q psy6548          77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI---LE--ENMIENAYKMG  151 (242)
Q Consensus        77 ~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~---~~--~~~~~~~~~~~  151 (242)
                      +..+....+.+|||+.++| +|+||+++++++++.+.......+++.+++++.++.++++..   ..  +...+.+++++
T Consensus       245 ~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (422)
T 3d6k_A          245 GNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKF  323 (422)
T ss_dssp             TCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Confidence            1122223344589996689 999999999999888876544556778889988887777531   11  22345556667


Q ss_pred             HHHHHHHHhhcCC-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccCcCC
Q psy6548         152 EIFRSELRSRLSP-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPALNIT  219 (242)
Q Consensus       152 ~~l~~~l~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~~~t  219 (242)
                      +.+++.|++.++. + +....+..|+++|+.++..  +...+.+.|.++||.+.++          +.+++|++++. .+
T Consensus       324 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~  400 (422)
T 3d6k_A          324 ERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PP  400 (422)
T ss_dssp             HHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SC
T ss_pred             HHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CC
Confidence            7777777433332 1 1112234678999999763  4677888999999999883          14789999776 79


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy6548         220 EQELREGLDIIINTINTMAA  239 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++++++++++|+++++++..
T Consensus       401 ~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          401 VAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999887643

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.8e-24  Score=184.08  Aligned_cols=220  Identities=15%  Similarity=0.149  Sum_probs=157.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCC--CCCC--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYED--VRPD--   84 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~--~~~~--   84 (242)
                      |+++ +...++++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++...|.. ..+..+.  ...+  
T Consensus       149 d~~~l~~~l~~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~  227 (411)
T 2o0r_A          149 DADALRRAVTPRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTIT  227 (411)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEE
T ss_pred             CHHHHHHhhccCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEE
Confidence            5666 43334679999999999999955 56789999999999999999999999887554432 1121111  1223  


Q ss_pred             EEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          85 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        85 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +.++||+++ +| +|+||+++++++++.+.......+++.++++++++.++++....  ++..++++++++++++.| +.
T Consensus       228 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~  305 (411)
T 2o0r_A          228 ISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGL-TE  305 (411)
T ss_dssp             EEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             EeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            344889998 89 89999999999888776543444566777888777777764322  346677888888888888 55


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC-----------------CCCEEEEeccCcCCHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI-----------------SNNIIRLSPALNITEQE  222 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~-----------------~~~~lR~~~~~~~t~e~  222 (242)
                      ++  +....+..++++|+.++... .+..++.++|. ++||.+.++                 +.+++|+++.  .++++
T Consensus       306 ~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~  381 (411)
T 2o0r_A          306 IG--FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDT  381 (411)
T ss_dssp             HT--CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHH
T ss_pred             cC--CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHH
Confidence            53  22122345678899887520 24678888887 679999763                 2468999964  58999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTINTM  237 (242)
Q Consensus       223 i~~~~~~l~~~l~~~  237 (242)
                      +++++++|++++++.
T Consensus       382 i~~~~~~l~~~~~~~  396 (411)
T 2o0r_A          382 LDEAIRRLSVLAERP  396 (411)
T ss_dssp             HHHHHHHHGGGGC--
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999877654

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.91  E-value=1e-23  Score=178.76  Aligned_cols=222  Identities=15%  Similarity=0.189  Sum_probs=160.4

Q ss_pred             cccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccc
Q psy6548           3 LQFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~   75 (242)
                      .+..+|++|+++  +.+.   ++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ | +++.|.++.
T Consensus       155 ~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~  230 (401)
T 2bwn_A          155 PKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA  230 (401)
T ss_dssp             CEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH
T ss_pred             eEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee
Confidence            356788888877  3332   257899999999999998776    8999999999999999999997 3 455554332


Q ss_pred             cccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHh---ccHHHH
Q psy6548          76 IHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILE---ENMIEN  146 (242)
Q Consensus        76 ~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~  146 (242)
                       ...++  .++++  ++||+++.   +.||+++++++++.+.....  ..+.+.++++++++.++++.++.   +++.++
T Consensus       231 -~~~~~~~~~~i~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  306 (401)
T 2bwn_A          231 -ERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA  306 (401)
T ss_dssp             -HHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             -eccCccccCcEEEeechhhccC---CCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence             22333  23444  58999992   23788888888777653211  12223466788888888887754   357788


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-------CCCEEEEeccCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-------SNNIIRLSPALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~lR~~~~~~~  218 (242)
                      ++++++++++.| ++++-...   ...+.++++.++.. .+..++.+.|. ++||.+.++       +.+++|++++..+
T Consensus       307 ~~~~~~~l~~~L-~~~g~~~~---~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~  381 (401)
T 2bwn_A          307 QQMHAKVLKMRL-KALGMPII---DHGSHIVPVVIGDP-VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVH  381 (401)
T ss_dssp             HHHHHHHHHHHH-HHHTCCBC---CCSSSCEEEECCCH-HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTS
T ss_pred             HHHHHHHHHHHH-HHCCCccc---CCCCCeEEEEeCCh-HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCC
Confidence            899999999999 65532111   22345788888653 56788999996 789999764       2358999999889


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTINTM  237 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~  237 (242)
                      +++++++++++|+++++++
T Consensus       382 t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          382 DLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             CHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999887653

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.91  E-value=5e-24  Score=180.81  Aligned_cols=211  Identities=11%  Similarity=0.064  Sum_probs=148.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCC----EEEeecccc-
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD----IVILGKALS-   93 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~----~~~~sK~~~-   93 (242)
                      +++++|++++++|++|.+ ++.+++++|+++|++||+++|+||+|.+++..+. ......++..++    +.++||+++ 
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  240 (400)
T 3asa_A          162 THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF  240 (400)
T ss_dssp             CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred             cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence            578888888899999955 5778999999999999999999999998755443 122222221123    344899998 


Q ss_pred             CCccchheeEeChhh-------hhccCCCCCCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          94 GGLYPISAVLADDEV-------MGTLVPGTHGSTY-GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        94 ~g~~~~g~~~~~~~~-------~~~l~~~~~~~~~-~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                      +| +|+||+++++++       ++.+.......++ +.+++++.++.++++....++..++++++++++++.| ++++  
T Consensus       241 ~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~g--  316 (400)
T 3asa_A          241 AG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKAL-LATG--  316 (400)
T ss_dssp             TT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-HHTT--
T ss_pred             cc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHCC--
Confidence            89 999999998877       4433221122233 5788888888877775433567788899999999999 6553  


Q ss_pred             CCCeEeeeceeEEEE-ecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIV-LDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +....+..++++|+. ++.. .+..++.+.|.+ +||.+.++      +++++|++  +..+++++++++++|++++++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          317 FEVFGGEHAPYLWVKPTQAN-ISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             CEEEECSSSSEEEEECCCTT-CCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred             CeeeCCCCceEEEEeccCCC-CCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence            222222347888998 7643 345568888875 59999875      35789999  5789999999999999988764


Q ss_pred             h
Q psy6548         238 A  238 (242)
Q Consensus       238 ~  238 (242)
                      .
T Consensus       394 ~  394 (400)
T 3asa_A          394 S  394 (400)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.91  E-value=1.5e-23  Score=176.69  Aligned_cols=217  Identities=17%  Similarity=0.253  Sum_probs=163.4

Q ss_pred             ccccCCCChhh--hcCCCC--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-c-CccCcccccc
Q psy6548           4 QFPVKSKQVPA--KLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L-GRTGKLLAIH   77 (242)
Q Consensus         4 ~~~~~~~d~~~--~~~~~~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~-~~~g~~~~~~   77 (242)
                      ++.+|++|+++  +.+.+.  +++++++++++|++|.+.+    +++|+++|++||+++|+||+|+. + ++.+.... .
T Consensus       147 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~  221 (384)
T 1bs0_A          147 LRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-W  221 (384)
T ss_dssp             EEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-H
T ss_pred             EEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-H
Confidence            56678888888  444332  4899999999999998776    89999999999999999999963 2 33333322 3


Q ss_pred             cCCCCCCEE--EeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Q psy6548          78 YEDVRPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE---ENMIENAYKM  150 (242)
Q Consensus        78 ~~~~~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~  150 (242)
                      .++..+|++  ++||+++   .+.||+++++++++.+....  ...+.+.+++.++++.++++.+.+   +++.++++++
T Consensus       222 ~~~~~~di~~~s~sK~~~---~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  298 (384)
T 1bs0_A          222 LQKVKPELLVVTFGKGFG---VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL  298 (384)
T ss_dssp             HTTCCCSEEEEESSSTTS---SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEeeccchhh---ccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            445567877  5889998   23489999998888776521  222336788888888888887762   4577888889


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHH
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQEL  223 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i  223 (242)
                      ++++++.| ++++  +. ..++.+.++++.++.. .+..++.+.|.++||.+.++.       .+++|++++..++++++
T Consensus       299 ~~~l~~~L-~~~g--~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i  373 (384)
T 1bs0_A          299 ITRFRAGV-QDLP--FT-LADSCSAIQPLIVGDN-SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDI  373 (384)
T ss_dssp             HHHHHHHH-TTSS--CE-ECSCCSSBCCEEEESH-HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHH
T ss_pred             HHHHHHHH-HhcC--Cc-ccCCCCCEEEEEeCCH-HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHH
Confidence            99999999 6653  11 1124567778888654 567889999999999998652       37899999988899999


Q ss_pred             HHHHHHHHHH
Q psy6548         224 REGLDIIINT  233 (242)
Q Consensus       224 ~~~~~~l~~~  233 (242)
                      ++++++|+++
T Consensus       374 ~~~~~~l~~~  383 (384)
T 1bs0_A          374 DRLLEVLHGN  383 (384)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.91  E-value=5.6e-23  Score=171.66  Aligned_cols=203  Identities=12%  Similarity=0.099  Sum_probs=151.6

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-CCcc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-GGLY   97 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~g~~   97 (242)
                      +++++++.++|++|. +.+.+.+++|+++|++||+++|+||+|+++...+........+..++++   ++||.++ +| +
T Consensus       145 ~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~  222 (361)
T 3ftb_A          145 VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-I  222 (361)
T ss_dssp             CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-G
T ss_pred             CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-c
Confidence            888888888999995 5566789999999999999999999998775531111222223333433   4889999 88 8


Q ss_pred             chheeE-eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCC-eEeeec
Q psy6548          98 PISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVP-VVRGKG  174 (242)
Q Consensus        98 ~~g~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~  174 (242)
                      |+||++ .++++++.+...  ..+++.++++++++.++++..+. ++..++++++++++++.| +.++.  .. ..++.+
T Consensus       223 r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~--~~~~~~~~~  297 (361)
T 3ftb_A          223 RFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEEL-NKIGF--IKRVFSPHA  297 (361)
T ss_dssp             CCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH-HHSSS--EEEEECCSS
T ss_pred             ceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhCCC--CceecCCCC
Confidence            999988 888998888763  34567888988888877763211 345677778888888888 66542  22 344567


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++++.++.  .+..++.+.|.++||.+.++      +++++|++++   ++++++++++.|+++.+.
T Consensus       298 ~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          298 NFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             SEEEEEESS--SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence            788888876  36788999999999999875      2689999944   888889999888877653

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.90  E-value=3.6e-23  Score=174.42  Aligned_cols=218  Identities=14%  Similarity=0.167  Sum_probs=159.5

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ ++  +..+....+  ..|++++
T Consensus       136 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~--~~d~~~~  206 (393)
T 3kgw_A          136 TLQEVEEGLAQHKPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQ--GIDIMYS  206 (393)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TSCCCTTTT--TCCEEEE
T ss_pred             CHHHHHHHHhhCCCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Ccccchhhc--CCCEEEe
Confidence            5555  3344448899999999999997776    8899999999999999999996 21  112222222  3567665


Q ss_pred             --eccccCCccchheeEeChhhhhccCCCCC-----------------------CCCCCCCHHHHHHHHHHHHHHHh---
Q psy6548          89 --GKALSGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILE---  140 (242)
Q Consensus        89 --sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~a~a~l~~~~~---  140 (242)
                        +|+++++ .++|++++++++++.+.+...                       ...++.+..+++++.++++.+..   
T Consensus       207 s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  285 (393)
T 3kgw_A          207 SSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGL  285 (393)
T ss_dssp             ESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             cCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence              4999877 789999999998887754221                       11234567777777778776654   


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCCCC-C-eEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEe
Q psy6548         141 ENMIENAYKMGEIFRSELRSRLSPDIV-P-VVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLS  213 (242)
Q Consensus       141 ~~~~~~~~~~~~~l~~~l~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~  213 (242)
                      +++.++++++++++++.| ++++-... . .....+.++++.++.. .+..++.+.|.++ ||.+.++    .++++|++
T Consensus       286 ~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~  363 (393)
T 3kgw_A          286 ENCWRRHREATAHLHKHL-QEMGLKFFVKDPEIRLPTITTVTVPAG-YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIG  363 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTCCBSSSSGGGBCSSEEEEECCTT-BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHH-HHcCCeeccCChhhcCCeEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEE
Confidence            456788899999999999 66642221 1 1122346677887654 5788999999988 9999875    46799999


Q ss_pred             c-cCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         214 P-ALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       214 ~-~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      + +...+++++++++++|+++++++.++
T Consensus       364 ~~~~~~~~~~i~~~~~~l~~~l~~~~~~  391 (393)
T 3kgw_A          364 LLGYNATTENVDRVAEALREALQHCPKN  391 (393)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred             ecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            7 55569999999999999999987654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.90  E-value=2.1e-23  Score=178.10  Aligned_cols=224  Identities=15%  Similarity=0.135  Sum_probs=158.3

Q ss_pred             Chhh--hcCC-CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHH-HhhCCEEEEeccccccCccC---cc-cc-c----
Q psy6548          11 QVPA--KLKS-NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQTGLGRTG---KL-LA-I----   76 (242)
Q Consensus        11 d~~~--~~~~-~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~-~~~~~~li~De~~~~~~~~g---~~-~~-~----   76 (242)
                      |+++  +.+. ++++++|+++| ++|++|. +.+.+.+++|+++| ++||+++|+||+|.++...+   .. .. .    
T Consensus       159 d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  237 (423)
T 3ez1_A          159 DVDAVERLAGTDPSVKGILFVPTYSNPGGE-TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR  237 (423)
T ss_dssp             CHHHHHHHHHSCTTEEEEEECSSSCTTTCC-CCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHH
T ss_pred             CHHHHHHHHhhCCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhh
Confidence            4555  3343 67899998775 7888885 55667799999999 99999999999997432222   11 01 0    


Q ss_pred             --ccCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH--HH--h--ccHHHHHH
Q psy6548          77 --HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--IL--E--ENMIENAY  148 (242)
Q Consensus        77 --~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~--~~--~--~~~~~~~~  148 (242)
                        +..+....+.++||++.+| +|+||+++++++++.+.......+++.+++++.++.++++.  ..  .  +...+.++
T Consensus       238 ~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  316 (423)
T 3ez1_A          238 DAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIA  316 (423)
T ss_dssp             HHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence              1112222244589997788 99999999999988887655556778888888887777765  11  1  22344455


Q ss_pred             HHHHHHHHHHHhhcCC-C--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEecc
Q psy6548         149 KMGEIFRSELRSRLSP-D--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPA  215 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~  215 (242)
                      ++++.+++.|.+.++. +  +....+..|+++|+.++..  +.+.+.+.|.++||.+.++          +.+++|++++
T Consensus       317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~  394 (423)
T 3ez1_A          317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPT  394 (423)
T ss_dssp             HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCS
T ss_pred             HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcC
Confidence            5666666666444442 1  1112345688999999874  5778899999999999882          3579999986


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         216 LNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       216 ~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      .. +++++++++++|+++++++..
T Consensus       395 ~~-~~~~i~~~~~~l~~~l~~~~~  417 (423)
T 3ez1_A          395 RP-PVEEVRTAMQVVAACIRLATE  417 (423)
T ss_dssp             SS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHH
Confidence            55 999999999999999988654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.90  E-value=2e-23  Score=174.82  Aligned_cols=205  Identities=15%  Similarity=0.187  Sum_probs=147.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc---CCCCCCEEEeecccc-C
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY---EDVRPDIVILGKALS-G   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~---~~~~~~~~~~sK~~~-~   94 (242)
                      ++++++++++.++|++|. +.+.+++++|+++|++||+++|+||+|+++...+... ...   ++....+.++||+++ +
T Consensus       144 ~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~  221 (364)
T 1lc5_A          144 TPDLDCLFLCTPNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF-IPALKDNPHIWVLRSLTKFYAIP  221 (364)
T ss_dssp             CTTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS-GGGCTTCTTEEEEEESTTTTTCT
T ss_pred             cCCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccch-hhHhccCCCEEEEEECchhhcCC
Confidence            356777777777899995 4577899999999999999999999998775433221 122   222222335889998 8


Q ss_pred             CccchheeE-eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          95 GLYPISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        95 g~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                      | +|+||++ +++++++.+.+.  ..+++.|++++.++.++++... -+...++++++++++.+.| +.++. + ...++
T Consensus       222 G-~r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~-~-~~~~~  295 (364)
T 1lc5_A          222 G-LRLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL-CQLPL-L-TVYPG  295 (364)
T ss_dssp             T-TCCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH-HTSTT-E-EECCC
T ss_pred             c-cceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-hcCCC-C-EECCC
Confidence            9 8999999 999988877652  2366788888888877776421 1335566777788888888 55532 1 11234


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .|.++++.++..   ..++.+.|.++||.+.++.      ++++|+++   .++++++++++.|+++++++
T Consensus       296 ~g~~~~~~~~~~---~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          296 RANYLLLRCERE---DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             SSSEEEEEESCT---TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC---
T ss_pred             CCeEEEEECCCc---HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhhcc
Confidence            567788887642   4568889999999998752      57999993   37889999999999888765

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.90  E-value=2.5e-23  Score=176.71  Aligned_cols=215  Identities=17%  Similarity=0.145  Sum_probs=155.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCC-C---CC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDV-R---PD   84 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~-~---~~   84 (242)
                      |+++ +...+.++++|++++++|++|.++ +.+.+++|+++|++||+++|+||+|+++.+.+... ....... .   ..
T Consensus       156 d~~~l~~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~  234 (410)
T 3e2y_A          156 DPRELESKFSSKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTIT  234 (410)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEE
T ss_pred             CHHHHHhhcCCCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEE
Confidence            5666 444456899999999999999554 67789999999999999999999999876655321 2222221 1   22


Q ss_pred             EEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-------Hh--ccHHHHHHHHHHHH
Q psy6548          85 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-------LE--ENMIENAYKMGEIF  154 (242)
Q Consensus        85 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-------~~--~~~~~~~~~~~~~l  154 (242)
                      +.++||+++ +| +|+||+++++++++.+.......+++.+++++.++.++++..       ..  ++..+.++++++.+
T Consensus       235 ~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (410)
T 3e2y_A          235 IGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRM  313 (410)
T ss_dssp             EEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             EecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence            334889999 89 999999999999888876555667788999998888887741       11  23556677788888


Q ss_pred             HHHHHhhcCCCCCCeEeeeceeEEEEecCCc----------hhHHHHHHHHH-HCCceeccC-----------CCCEEEE
Q psy6548         155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKSI----------LEVYDVCIKMK-DAGLVTKPI-----------SNNIIRL  212 (242)
Q Consensus       155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~-~~gi~~~~~-----------~~~~lR~  212 (242)
                      ++.| +.++  +....+..++++|+++....          .+..++.++++ ++||.+.++           +.+++|+
T Consensus       314 ~~~L-~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRi  390 (410)
T 3e2y_A          314 VRLL-NSVG--LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRF  390 (410)
T ss_dssp             HHHH-HTTT--CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEE
T ss_pred             HHHH-HHCC--CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEE
Confidence            8888 5553  22233556788888876421          11346777654 679999764           1478999


Q ss_pred             eccCcCCHHHHHHHHHHHHH
Q psy6548         213 SPALNITEQELREGLDIIIN  232 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +  +..+++++++++++|++
T Consensus       391 s--~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          391 C--FIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             E--CCCCHHHHHHHHHHHHT
T ss_pred             E--EcCCHHHHHHHHHHHHh
Confidence            9  45599999999999875

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=2.5e-22  Score=169.24  Aligned_cols=210  Identities=16%  Similarity=0.237  Sum_probs=154.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHH----hhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS----QYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~----~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~   85 (242)
                      |+++ +...++++++|++++++|++|.+.+    +++|+++|+    +||+++|+||+|+ ++..+  ..  .....+|+
T Consensus       143 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~--~~--~~~~~~d~  213 (390)
T 1elu_A          143 AAAVLANHLGPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP--LD--FSRLEVDY  213 (390)
T ss_dssp             HHHHHHTTCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC--CC--TTTSCCSE
T ss_pred             hHHHHHHhcCCCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC--CC--hhhcCCCE
Confidence            4455 4444568999999999999997776    999999999    9999999999996 33222  11  11234677


Q ss_pred             EE--eeccccCCccchheeEeChhhhhccCCCCCC----------------------CCCCCCHHHHHHHHHHHHHHHhc
Q psy6548          86 VI--LGKALSGGLYPISAVLADDEVMGTLVPGTHG----------------------STYGGNPLACKLAMTALDVILEE  141 (242)
Q Consensus        86 ~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~a~a~l~~~~~~  141 (242)
                      ++  ++|++.|| .++|++++++++++.+.+...+                      ..++.+++++.++.++++.+...
T Consensus       214 ~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~  292 (390)
T 1elu_A          214 YAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ  292 (390)
T ss_dssp             EEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHc
Confidence            77  78988888 7899999999988887763211                      12345667777777777766543


Q ss_pred             ----cHHHHHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEecc
Q psy6548         142 ----NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPA  215 (242)
Q Consensus       142 ----~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~  215 (242)
                          ++.++++++++++.+.| +.++. ......++.+.++++.++.. .+..++.++|.++||.+.++. ++++|++++
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~  370 (390)
T 1elu_A          293 GTAEERYQAICQRSEFLWRGL-NQLPHVHCLATSAPQAGLVSFTVDSP-LGHRAIVQKLEEQRIYLRTIADPDCIRACCH  370 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-HHSTTEEESCSSCCSSSEEEEEECSS-SCHHHHHHHHHHTTEECEEETTTTEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhcCCcEEecCccccccEEEEEcCCC-CCHHHHHHHHHHCCEEEEecCCCCeEEEecc
Confidence                36778888889999999 66532 11111034566777787643 467889999999999998874 689999998


Q ss_pred             CcCCHHHHHHHHHHHHH
Q psy6548         216 LNITEQELREGLDIIIN  232 (242)
Q Consensus       216 ~~~t~e~i~~~~~~l~~  232 (242)
                      ...+++++++++++|++
T Consensus       371 ~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          371 YITDEEEINHLLARLAD  387 (390)
T ss_dssp             TTCCHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHh
Confidence            88999999999999865

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.90  E-value=5.2e-23  Score=172.11  Aligned_cols=200  Identities=18%  Similarity=0.176  Sum_probs=148.7

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccchh
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPIS  100 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~~g  100 (242)
                      ++++++++++|++|.+.+    ++++.++|++||+++|+||+|++|...+........+....+.++||+++ +| +|+|
T Consensus       150 ~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G  224 (360)
T 3hdo_A          150 GKVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIG  224 (360)
T ss_dssp             SSEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCE
T ss_pred             CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-ccee
Confidence            458888888999997776    77889999999999999999987633221111122222223445889998 88 9999


Q ss_pred             eeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEE
Q psy6548         101 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI  179 (242)
Q Consensus       101 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~  179 (242)
                      |+++++++++.+...  ..+++.++++++++.++++.... ++..++++++++++++.| +.++  + ...++.+.++++
T Consensus       225 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~-~~~~~~~~~~~~  298 (360)
T 3hdo_A          225 LAIARPEVIAALDKI--RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTEL-RSIG--Y-DVIPSQGNYLFA  298 (360)
T ss_dssp             EEECCHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHTT--C-EECCCSSSEEEE
T ss_pred             eEeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC--C-EEcCCCccEEEE
Confidence            999999998888753  34567889999888888874221 446677888888888888 6553  2 223456778888


Q ss_pred             EecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         180 VLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .++.  .+..++.+.|.++||.+++++    ++++|++++   ++++++++++.|+++.+..
T Consensus       299 ~~~~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~~~  355 (360)
T 3hdo_A          299 TPPD--RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGEGH  355 (360)
T ss_dssp             ECTT--CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred             ECCC--CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence            8765  367889999999999998764    488999943   9999999999998876653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.90  E-value=1.7e-22  Score=169.61  Aligned_cols=208  Identities=14%  Similarity=0.088  Sum_probs=151.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCC-CCCCEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYED-VRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~-~~~~~~   86 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    ++++.++|+.+++++|+||+|++++........ +.++ ....+.
T Consensus       152 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~  227 (369)
T 3cq5_A          152 DMDVALEEIRAKQPDIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSR  227 (369)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEE
T ss_pred             CHHHHHHHhhccCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEE
Confidence            4455  3333336889999999999997665    667777777888999999999877532211111 2222 223344


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP  164 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~  164 (242)
                      ++||+++ +| +|+||+++++++++.+...  ..+++.+++++.++.++++..+ -++..++++++++++++.| ++.+ 
T Consensus       228 s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g-  302 (369)
T 3cq5_A          228 TMSKAFDFAG-GRLGYFVANPAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARL-EELG-  302 (369)
T ss_dssp             ESSSTTSCGG-GCCEEEEECTHHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHH-HHHT-
T ss_pred             echHhcCCcc-cceEEEEeCHHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhCC-
Confidence            5899998 88 8999999999988888763  3356688888888888887532 1456778888889999998 5543 


Q ss_pred             CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                       + ...+..+.++++.++.   +..++.+.|.++||.+.+++ ++++|++++   ++++++++++.|+++++
T Consensus       303 -~-~~~~~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          303 -Y-AVVPSESNFVFFGDFS---DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             -C-EEECCSSSEEEEECCS---SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             -C-EECCCCCeEEEEECCC---CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence             2 1224456788888762   46789999999999999863 578999965   88999999999988764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.90  E-value=3.6e-22  Score=167.76  Aligned_cols=215  Identities=15%  Similarity=0.186  Sum_probs=157.5

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+. +..  .....  ...+|++++
T Consensus       115 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~--~~~~~--~~~~d~~~~  185 (384)
T 3zrp_A          115 KPGEVEEEVRKSEYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSSV-GAE--EVKAE--EWNVDVYLT  185 (384)
T ss_dssp             CHHHHHHHHHHSCEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTTT-TTS--CCCTT--TTTCSEEEE
T ss_pred             CHHHHHHHHHhCCCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECcccc-cCc--ccccc--ccCCCEEEe
Confidence            6666  4444557999999999999997776    99999999999999999999962 111  11112  224677775


Q ss_pred             --eccccCCccchheeEeChhhhhcc-CCCC---------------------CCCCC-CCCHHHHHHHHHHHHHHHh---
Q psy6548          89 --GKALSGGLYPISAVLADDEVMGTL-VPGT---------------------HGSTY-GGNPLACKLAMTALDVILE---  140 (242)
Q Consensus        89 --sK~~~~g~~~~g~~~~~~~~~~~l-~~~~---------------------~~~~~-~~~~~~~~~a~a~l~~~~~---  140 (242)
                        +|+++++ .++|++++++++++.+ .+..                     ....+ +.+...+.++.++++.+..   
T Consensus       186 s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~  264 (384)
T 3zrp_A          186 ASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGI  264 (384)
T ss_dssp             ETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             cCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCH
Confidence              4999877 7899999999887776 2110                     11222 4456666666677776654   


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCCCCCe--EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCC---CEEEEecc
Q psy6548         141 ENMIENAYKMGEIFRSELRSRLSPDIVPV--VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISN---NIIRLSPA  215 (242)
Q Consensus       141 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~---~~lR~~~~  215 (242)
                      +++.++++++++++.+.| ++++-.....  ....+.++++.++.  .+..++.+.|.++||.+.++..   +++|++++
T Consensus       265 ~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~  341 (384)
T 3zrp_A          265 ENRIKRHTMVASAIRAGL-EALGLEIVARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHM  341 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTCCBSCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHH-HHCCCeEccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCCCCCcCEEEEecc
Confidence            357788889999999999 6654211111  11246677888876  4688999999999999987631   78999998


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         216 LNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       216 ~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      ..++++++++++++|+++++++.
T Consensus       342 ~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          342 GWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcC
Confidence            88999999999999999998764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.90  E-value=3.8e-23  Score=173.09  Aligned_cols=210  Identities=16%  Similarity=0.169  Sum_probs=152.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC---ccCccc-cc---ccCCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG---RTGKLL-AI---HYEDVR   82 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~---~~g~~~-~~---~~~~~~   82 (242)
                      |+++ +...++++++|++++++|++|.+. +.+.+++++++| ++|+++|+||+|+++.   ..+... ..   ...+..
T Consensus       142 d~~~l~~~l~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T 3get_A          142 EFKKLYETHKDEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV  219 (365)
T ss_dssp             HHHHHHHHTTTTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTE
T ss_pred             CHHHHHHHhCCCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCE
Confidence            3444 333357899999999999999655 556677777777 6799999999998764   221111 11   112222


Q ss_pred             CCEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHh
Q psy6548          83 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        83 ~~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~  160 (242)
                      ..+.++||+++ +| +|+||+++++++++.+...  ..+++.+++++.++.++++..+. ++..++++++++++++.| +
T Consensus       220 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~  295 (365)
T 3get_A          220 LYLGTFSKLYGLGG-LRIGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFA-K  295 (365)
T ss_dssp             EEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEEeecchHhcCcc-hheEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            22334889998 88 9999999999988887653  33456888888888877764321 345677788888888888 6


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC---CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .++  + ...++.+.++|+.++..  +..++.+.|.++||.+.++.   .+++|++++   ++++++++++.|++++
T Consensus       296 ~~g--~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          296 KHN--I-KIIDSYTNFITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             HTT--C-EECCCSSSEEEEECSSS--CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             hCC--C-EECCCCCeEEEEECCCC--CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence            553  1 22344567788888763  57889999999999998875   689999944   8999999999998875

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.89  E-value=6.1e-22  Score=165.26  Aligned_cols=215  Identities=15%  Similarity=0.202  Sum_probs=158.3

Q ss_pred             CChhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+.+ .++++|++.++++++|.+.+    +++|+++|++||+++|+||+|+ ++..+  .....  ..+|++
T Consensus       117 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~  187 (366)
T 1m32_A          117 PDVQAIDAILNADPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYL  187 (366)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEE
Confidence            56666  34443 35788888888999997776    8999999999999999999996 22221  11122  246776


Q ss_pred             E--eeccccCCccchheeEeChhhhhccCCCCCC------------------CCCCCCHHHHHHHHHHHHHHHhc----c
Q psy6548          87 I--LGKALSGGLYPISAVLADDEVMGTLVPGTHG------------------STYGGNPLACKLAMTALDVILEE----N  142 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~a~a~l~~~~~~----~  142 (242)
                      +  ++|+++++ .++|++++++++++.+.+....                  ..++.++.+++++.++++.+...    +
T Consensus       188 ~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  266 (366)
T 1m32_A          188 ISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA  266 (366)
T ss_dssp             EEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EecCcccccCC-CceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhH
Confidence            6  67999876 6789999999988887653111                  12466778887888888876543    4


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeE-eeeceeEEEEecC--CchhHHHHHHHHHHCCceeccC---CCCEEEEeccC
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDK--SILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPAL  216 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~  216 (242)
                      +.++++++++++++.| ++++-...... ...+.++++.++.  . .+..++.+.|.++||.+.++   +.+.+|++++.
T Consensus       267 ~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~  344 (366)
T 1m32_A          267 RHQRYQQNQRSLVAGM-RALGFNTLLDDELHSPIITAFYSPEDPQ-YRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIG  344 (366)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCCBSSCGGGBCSSEEEEECCCCTT-CCHHHHHHHHHHTTEECEECCCSSSCEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHH-HHCCCeeccCchhcCceEEEEEcCccCC-CCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCC
Confidence            6788889999999999 66532111111 1345688888874  3 46788999999999999876   46899999998


Q ss_pred             cCCHHHHHHHHHHHHHHHHH
Q psy6548         217 NITEQELREGLDIIINTINT  236 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .++++++++++++|++++++
T Consensus       345 ~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          345 EVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999987654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.89  E-value=1.3e-22  Score=172.08  Aligned_cols=216  Identities=13%  Similarity=0.134  Sum_probs=157.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+. +..  ......+  ..|+++ 
T Consensus       126 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~--~~~~~~~--~~d~~~~  196 (411)
T 3nnk_A          126 TPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATASL-GGN--PLETDVW--GLDAVSA  196 (411)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTTB-TTB--CCCTTTT--TCSEEEC
T ss_pred             CHHHHHHHHhhCCCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCccc-CCc--ccchhcc--CCcEEEe
Confidence            6676  3344448999999999999997766    88999999999999999999862 111  1222222  356766 


Q ss_pred             -eeccccCCccchheeEeChhhhhccCCCC------------------------------------CCCCCCCCHHHHHH
Q psy6548          88 -LGKALSGGLYPISAVLADDEVMGTLVPGT------------------------------------HGSTYGGNPLACKL  130 (242)
Q Consensus        88 -~sK~~~~g~~~~g~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~  130 (242)
                       ++|+++++ .++|++++++++++.+.+..                                    ....++.+..++++
T Consensus       197 s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  275 (411)
T 3nnk_A          197 GMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFG  275 (411)
T ss_dssp             CSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHH
T ss_pred             cCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHH
Confidence             56998877 78999999998887665422                                    01123456677777


Q ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCC-eEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC
Q psy6548         131 AMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVP-VVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI  205 (242)
Q Consensus       131 a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~  205 (242)
                      +.++++.+...   ++.++++++++++++.| ++++-.... .....+.++++.++.. .+..++.+.|.++ ||.++++
T Consensus       276 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g  353 (411)
T 3nnk_A          276 ARECARLILQEGLDYGIARHKLHGDALVKGI-QAMGLETFGDLKHKMNNVLGVVIPQG-INGDQARKLMLEDFGIEIGTS  353 (411)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHTTCCBCSCGGGBCSSEEEEECCTT-CCHHHHHHHHHHHHSEEEEEC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHcCCEeCCCcccccccEEEEECCCC-CCHHHHHHHHHHhcCeEEeCc
Confidence            77777766543   56788889999999999 665422111 1122467788888654 5688999999887 9999874


Q ss_pred             ----CCCEEEEec-cCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ----SNNIIRLSP-ALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ----~~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                          .++++|+++ +...+++++++++++|+++++++.
T Consensus       354 ~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          354 FGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             CGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence                467999997 667799999999999999998753

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.89  E-value=9.1e-23  Score=173.88  Aligned_cols=208  Identities=13%  Similarity=0.184  Sum_probs=149.3

Q ss_pred             CCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHH------hhCCEEEEeccccccCccCc---ccccccCCCCCC---EE
Q psy6548          20 PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCS------QYNVLFIADEVQTGLGRTGK---LLAIHYEDVRPD---IV   86 (242)
Q Consensus        20 ~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~------~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~---~~   86 (242)
                      +..++++++++ +|++|. +.+.+.+++|+++|+      +||+++|+||+|.+|+..+.   .+.....++.++   ++
T Consensus       178 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~  256 (418)
T 3rq1_A          178 QTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCV  256 (418)
T ss_dssp             CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred             CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEE
Confidence            34557888877 899995 456677999999999      89999999999988865553   122222344455   33


Q ss_pred             --Eeecccc-CCccchheeEe---ChhhhhccCCCCCC---CC-CCCCHHHHHHHHHHHHHH------Hh--ccHHHHHH
Q psy6548          87 --ILGKALS-GGLYPISAVLA---DDEVMGTLVPGTHG---ST-YGGNPLACKLAMTALDVI------LE--ENMIENAY  148 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~---~~~~~~~l~~~~~~---~~-~~~~~~~~~~a~a~l~~~------~~--~~~~~~~~  148 (242)
                        ++||+++ +| +|+||+++   ++++++.+......   .+ ...+.+++.++.++++..      ..  +.+.+.++
T Consensus       257 ~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  335 (418)
T 3rq1_A          257 CYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIR  335 (418)
T ss_dssp             EEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence              4889998 89 99999998   88888877653111   12 246777777776666432      11  23456777


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      ++++.+.+.| +.++  +....+..++++|+.+.    +..++.+.|.++||.+.|+ ++++|+++. ..++++++++++
T Consensus       336 ~~~~~l~~~L-~~~g--~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~  406 (418)
T 3rq1_A          336 DRADIFKQEA-AQVG--LPMLPYRGGFFITIPTD----SANAICEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAE  406 (418)
T ss_dssp             HHHHHHHHHH-HHHT--CCCCCCCSSSEEEEECT----THHHHHHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHH
T ss_pred             HHHHHHHHHH-HhcC--CCCCCCCceEEEEcCCC----CHHHHHHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHH
Confidence            8888888888 6554  22223445667777653    4678889999999999997 678999955 359999999999


Q ss_pred             HHHHHHHHHh
Q psy6548         229 IIINTINTMA  238 (242)
Q Consensus       229 ~l~~~l~~~~  238 (242)
                      +|+++++++.
T Consensus       407 ~l~~~l~~~~  416 (418)
T 3rq1_A          407 KIYNAMKSLG  416 (418)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.82  E-value=5.3e-25  Score=186.27  Aligned_cols=219  Identities=11%  Similarity=0.061  Sum_probs=153.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc----cccc--CCCC
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL----AIHY--EDVR   82 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~----~~~~--~~~~   82 (242)
                      |+++  +.+.+++++++++++++|++|.+ ++.+++++|+++|++||+++|+||+|+++...+...    ....  .+..
T Consensus       152 d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  230 (392)
T 3b1d_A          152 DFEQLENDIVENDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFA  230 (392)
Confidence            3444  33443678889998899999965 566789999999999999999999999876554311    1111  2233


Q ss_pred             CCEEEeecccc-CCccchheeEeCh-hhhhccCCCCCCCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~~sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~  157 (242)
                      ..+.++||+++ +| +|+||+++++ ++++.+......+++ +.+++++.++.++++....  ++..+.++++++.+.+.
T Consensus       231 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  309 (392)
T 3b1d_A          231 LVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEY  309 (392)
Confidence            44556999998 89 9999999865 588888775454443 4577888887777764221  34556666777777777


Q ss_pred             HHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHH
Q psy6548         158 LRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       158 l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      | ++ ++. +....+..+++.|++++..+.+..++.+.|. ++||.+.++      +++++|+++.  .+++++++++++
T Consensus       310 l-~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~  385 (392)
T 3b1d_A          310 F-AQEAPR-LKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKR  385 (392)
Confidence            7 44 432 2222234456667887652235678899997 789999875      3568999944  578899999999


Q ss_pred             HHHHHH
Q psy6548         230 IINTIN  235 (242)
Q Consensus       230 l~~~l~  235 (242)
                      |+++++
T Consensus       386 l~~~l~  391 (392)
T 3b1d_A          386 IVCCLP  391 (392)
Confidence            988765

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=4.9e-22  Score=167.43  Aligned_cols=217  Identities=13%  Similarity=0.110  Sum_probs=146.3

Q ss_pred             ccccCCC-----Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC--ccCc--
Q psy6548           4 QFPVKSK-----QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--RTGK--   72 (242)
Q Consensus         4 ~~~~~~~-----d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~--~~g~--   72 (242)
                      +..+|.+     |+++  +.+.+.+++++++++++|++|.+.+    +++|+++|++||+++|+||+|+++.  ..+.  
T Consensus       147 ~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~  222 (397)
T 3f9t_A          147 YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKY  222 (397)
T ss_dssp             EEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGG
T ss_pred             eEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhccccc
Confidence            3455555     6666  3333337889999999999997765    9999999999999999999997642  2222  


Q ss_pred             -------ccccccCCCCCCEEE--eeccccCCccchheeEeCh-hhhhccC---CCCCC--------CCCCCCHHHHHHH
Q psy6548          73 -------LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADD-EVMGTLV---PGTHG--------STYGGNPLACKLA  131 (242)
Q Consensus        73 -------~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~-~~~~~l~---~~~~~--------~~~~~~~~~~~~a  131 (242)
                             .+....   ..|+++  ++|++++| .++|+++.++ .+.+.+.   +....        .....+.+++.++
T Consensus       223 ~~~~~~~~~~~~~---~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  298 (397)
T 3f9t_A          223 KKKGVNYKFDFSL---GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAV  298 (397)
T ss_dssp             CCTTCCCCCSGGG---TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHH
T ss_pred             ccccccccccccc---cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHH
Confidence                   112122   335444  67998888 7999988764 4554442   21111        1111233444444


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEE
Q psy6548         132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNII  210 (242)
Q Consensus       132 ~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~l  210 (242)
                      .+.+....-++..++.+++++++++.| ++++-  ....++.+.++++..+.    ..++.+.|.++||.+.++. ++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g~--~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~~~~~~~~  371 (397)
T 3f9t_A          299 LRYLGREGQRKIVNECMENTLYLYKKL-KENNF--KPVIEPILNIVAIEDED----YKEVCKKLRDRGIYVSVCNCVKAL  371 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTC--CBSSCCSSSEEEEECTT----HHHHHHHHHHTTCBCEECSSSSEE
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH-HHCCC--EEEcCCCccEEEEEeCC----HHHHHHHHHhCCeEEeccCCCCEE
Confidence            443332222456778888999999999 66532  21122445667776544    5789999999999998874 5899


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         211 RLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      |++++..++++++++++++|+++++
T Consensus       372 Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          372 RIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            9999988999999999999998764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.89  E-value=2.6e-22  Score=170.94  Aligned_cols=222  Identities=13%  Similarity=0.114  Sum_probs=152.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc----cc-ccccCCCCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK----LL-AIHYEDVRPD   84 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~----~~-~~~~~~~~~~   84 (242)
                      |+++ +...+.++++++++.++|++|. ..+++++++|+++|++||+++|+||+|.++...|.    .. ....++...+
T Consensus       166 d~~~l~~~l~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (416)
T 1bw0_A          166 DLDEIRRLKDDKTKLLIVTNPSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVP  244 (416)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCC
T ss_pred             CHHHHHHHhccCCeEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCc
Confidence            5666 3333456777777778899995 55778999999999999999999999988754443    11 2222222222


Q ss_pred             E---EEeecccc-CCccchheeEeChh--hhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHH
Q psy6548          85 I---VILGKALS-GGLYPISAVLADDE--VMGTLVPG---THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGE  152 (242)
Q Consensus        85 ~---~~~sK~~~-~g~~~~g~~~~~~~--~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~  152 (242)
                      +   .++||+++ +| +|+||++++++  +++.+...   ....+++.++++++++.++++....   ++..++++++++
T Consensus       245 ~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  323 (416)
T 1bw0_A          245 RVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM  323 (416)
T ss_dssp             EEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2   23889987 78 89999998653  44333211   0123567788888888888773211   345677788888


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHH
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQEL  223 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i  223 (242)
                      ++.+.| +.++. +....+..++++|+.++..    ..+..++.+.|. ++||.+.++.    ++++|+++  ..+++++
T Consensus       324 ~l~~~L-~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l  399 (416)
T 1bw0_A          324 YLYNHI-GECIG-LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVY  399 (416)
T ss_dssp             HHHHHH-TTSTT-EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHH
T ss_pred             HHHHHH-HhCCC-CcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHH
Confidence            888888 65531 1111234577888887631    025678888885 8899998752    57999996  4689999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy6548         224 REGLDIIINTINTMA  238 (242)
Q Consensus       224 ~~~~~~l~~~l~~~~  238 (242)
                      ++++++|.+++++.+
T Consensus       400 ~~~l~~l~~~l~~~~  414 (416)
T 1bw0_A          400 REAVERIKAFCQRHA  414 (416)
T ss_dssp             HHHHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988743

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.89  E-value=6.1e-22  Score=164.47  Aligned_cols=215  Identities=17%  Similarity=0.124  Sum_probs=154.4

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++  +.+.++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|. ++...  .....+  .+|+++
T Consensus       111 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~  181 (353)
T 2yrr_A          111 VDPEAVARALKRRRYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAM--GVDYAF  181 (353)
T ss_dssp             CCHHHHHHHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEE
T ss_pred             CCHHHHHHHHHhCCCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--cccccc--CceEEE
Confidence            35555  3333337889999999999997776    8899999999999999999994 43332  122222  357777


Q ss_pred             --eeccccCCccchheeEeChhhhhccCC--C-------------CCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVP--G-------------THGSTYGGNPLACKLAMTALDVILEE---NMIENA  147 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~--~-------------~~~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~  147 (242)
                        ++|+++++ .++|++++++++++.+..  .             .....++.+..++.++.++++.+...   ++.+++
T Consensus       182 ~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  260 (353)
T 2yrr_A          182 TGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRA  260 (353)
T ss_dssp             CCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence              46998876 678999999998877752  0             01223355677777777788776443   467888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHH
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQEL  223 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i  223 (242)
                      +++++++++.| ++++-.........++++++.++.. .+..++.+.|.++||.+.++    .++++|++++...+++++
T Consensus       261 ~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~  338 (353)
T 2yrr_A          261 REVYAWVLEEL-KARGFRPYPKASPLPTVLVVRPPEG-VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREA  338 (353)
T ss_dssp             HHHHHHHHHHH-HHTTCEESCSSSBCTTEEEEECCTT-CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHH
T ss_pred             HHHHHHHHHHH-HHCCCccccCccCCCeEEEEECCCC-CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHH
Confidence            88999999999 6553111111112456678887643 46788999999999999865    367899998878899999


Q ss_pred             H-HHHHHHHHHHHH
Q psy6548         224 R-EGLDIIINTINT  236 (242)
Q Consensus       224 ~-~~~~~l~~~l~~  236 (242)
                      + +++++|+++++.
T Consensus       339 ~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          339 YQAFLKALDRALAL  352 (353)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            9 999999988753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.89  E-value=2.8e-21  Score=163.49  Aligned_cols=211  Identities=15%  Similarity=0.166  Sum_probs=152.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...+.++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+.. ..  ......  ..+|+++  
T Consensus       153 d~~~l~~~l~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g-~~--~~~~~~--~~~d~~~~s  223 (406)
T 1kmj_A          153 QLETLPTLFDEKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVM-HH--PVDVQA--LDCDFYVFS  223 (406)
T ss_dssp             CGGGHHHHCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTT-TS--CCCHHH--HTCSEEEEE
T ss_pred             CHHHHHHHhccCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcC-CC--CCcccc--cCCCEEEEE
Confidence            4566 4444568999999999999998776    999999999999999999999732 22  111111  2467765  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCCC---------------------CCCCHHHHHHHH-HHHHHHHh---cc
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGST---------------------YGGNPLACKLAM-TALDVILE---EN  142 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~a~-a~l~~~~~---~~  142 (242)
                      ++|.++ + .++|++++++++++.+.+...+++                     .+.+++++.++. ++++.+.+   ++
T Consensus       224 ~~K~~g-~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  301 (406)
T 1kmj_A          224 GHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNN  301 (406)
T ss_dssp             GGGTTS-C-TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             chhccC-C-CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence            789996 2 347999999999988876543221                     223455555444 67776654   35


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeEee--eceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CC
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVVRG--KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NN  208 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~  208 (242)
                      +.++++++++++++.| ++++. +. ....  .+.++.+.++.  .+..++.+.|.++||.+.++.            ++
T Consensus       302 ~~~~~~~~~~~l~~~L-~~~~~-~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~  376 (406)
T 1kmj_A          302 IAEYEQNLMHYALSQL-ESVPD-LT-LYGPQNRLGVIAFNLGK--HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPA  376 (406)
T ss_dssp             HHHHHHHHHHHHHHHH-TTSTT-EE-EESCTTCCSEEEEEETT--CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHH-hcCCC-eE-EecCCCcCCEEEEEECC--CCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCC
Confidence            6777888888999988 66531 11 1112  45666677754  357788999999999998642            57


Q ss_pred             EEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         209 IIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+|++++..+|++|++++++.|+++++.+
T Consensus       377 ~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          377 MCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999899999999999999988764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.89  E-value=4.3e-23  Score=172.87  Aligned_cols=202  Identities=13%  Similarity=0.162  Sum_probs=151.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~   97 (242)
                      +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+++. .+  .....+  .+|+++  ++|+++++ .
T Consensus       146 ~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~-~~--~~~~~~--~~di~~~s~sK~~~~~-~  215 (371)
T 2e7j_A          146 GEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGR-MP--VSLKEI--GADFIVGSGHKSMAAS-G  215 (371)
T ss_dssp             SCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTT-BC--CCHHHH--TCSEEEEEHHHHSSCC-S
T ss_pred             CCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCC-CC--CChhhc--CCCEEEecCCcCCCCC-C
Confidence            68999999999999998776    7999999999999999999997532 21  111222  356665  68999988 7


Q ss_pred             chheeEeChhhhhc-cCCCCCC--C-----CCCCCHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHHhhcCCCCC
Q psy6548          98 PISAVLADDEVMGT-LVPGTHG--S-----TYGGNPLACKLAMTALDVILEENMIENA--YKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        98 ~~g~~~~~~~~~~~-l~~~~~~--~-----~~~~~~~~~~~a~a~l~~~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~  167 (242)
                      |+|++++++++++. +.+...+  .     +++.++..++++.++++.+.. ++.+++  +++++++++.| +.++-...
T Consensus       216 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L-~~~~~~~~  293 (371)
T 2e7j_A          216 PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEM-EKLGIKQL  293 (371)
T ss_dssp             SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHH-HHTTCEEE
T ss_pred             CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHcCcEEe
Confidence            99999999988887 7654431  2     345566777777778877655 566778  88999999999 65531111


Q ss_pred             CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------C--CCEEE-EeccCc-CCHHHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------S--NNIIR-LSPALN-ITEQELREGLDIIINTINT  236 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~--~~~lR-~~~~~~-~t~e~i~~~~~~l~~~l~~  236 (242)
                      ......+.++++.++    +..++.+.|.++||.+.+.       +  ++++| ++++.. ++++++++++++|++++++
T Consensus       294 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          294 GDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             SSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccCceEEEECC----CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            111113668888876    4678899999999998761       1  57899 998877 8999999999999998875


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      +
T Consensus       370 ~  370 (371)
T 2e7j_A          370 Y  370 (371)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.88  E-value=2.5e-21  Score=164.72  Aligned_cols=216  Identities=16%  Similarity=0.189  Sum_probs=157.5

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..+|.  +++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ ++...  .....+  .+
T Consensus       150 ~~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~  218 (416)
T 1qz9_A          150 RLVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GA  218 (416)
T ss_dssp             EEESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TC
T ss_pred             EEeCc--HHHHHHHhCCCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CC
Confidence            34454  555 3333458999999999999997776    8999999999999999999996 33221  111222  36


Q ss_pred             CEEEe--eccccCCccch-heeEeChhhhhccCCCCCC----------------------C-CCCCCHHHHHHHHHHHHH
Q psy6548          84 DIVIL--GKALSGGLYPI-SAVLADDEVMGTLVPGTHG----------------------S-TYGGNPLACKLAMTALDV  137 (242)
Q Consensus        84 ~~~~~--sK~~~~g~~~~-g~~~~~~~~~~~l~~~~~~----------------------~-~~~~~~~~~~~a~a~l~~  137 (242)
                      |++++  +|++++| .++ |++++++++++.+.+...+                      . ..+.++.+++++.++++.
T Consensus       219 d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  297 (416)
T 1qz9_A          219 DYAIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDV  297 (416)
T ss_dssp             SEEEECSSSTTCCC-TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             CEEEecCcccCCCC-CCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHH
Confidence            77775  5999877 788 9999999888777653222                      1 124566777777788887


Q ss_pred             HHh---ccHHHHHHHHHHHHHHHHHhhc-CC-CCC-CeEe---eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCC
Q psy6548         138 ILE---ENMIENAYKMGEIFRSELRSRL-SP-DIV-PVVR---GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNN  208 (242)
Q Consensus       138 ~~~---~~~~~~~~~~~~~l~~~l~~~l-~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  208 (242)
                      +..   +++.++++++++++++.| +.+ +. ++. ....   ..+.++++.++.    ..++.+.|.++||.+...+.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~gi~~~~~~~~  372 (416)
T 1qz9_A          298 FAQTDMASLRRKSLALTDLFIELV-EQRCAAHELTLVTPREHAKRGSHVSFEHPE----GYAVIQALIDRGVIGDYREPR  372 (416)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHH-HHHHTTSCCEECSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTEECEEETTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHH-HhhccCCCeEEeCCCCHHHcCCEEEEecCC----HHHHHHHHHhCCcEeccCCCC
Confidence            754   346788889999999999 554 31 111 1111   135677887753    578999999999998776788


Q ss_pred             EEEEecc-CcCCHHHHHHHHHHHHHHHHHH
Q psy6548         209 IIRLSPA-LNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       209 ~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+|++++ +.++++++++++++|++++++.
T Consensus       373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          373 IMRFGFTPLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence            9999986 5789999999999999998764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=2.5e-22  Score=169.30  Aligned_cols=218  Identities=11%  Similarity=0.076  Sum_probs=154.6

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|++.  +.+.++++++|++..+.+++|. ..+.+++++|+++|++||+++|+|++++  |  +.++....++.  |+++
T Consensus       122 ~d~~~l~~~i~~~~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~--d~~~  194 (379)
T 3ke3_A          122 VDIETAVAKIKEDKSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGI--DVLI  194 (379)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTC--SEEE
T ss_pred             CCHHHHHHHHhhcCCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCC--CEEE
Confidence            56666  4444457888999999999994 5557789999999999999999999986  2  22333334444  6655


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCC-----C-----------------CCCCCCCHHHHHHHHHHHHHHHhc--
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGT-----H-----------------GSTYGGNPLACKLAMTALDVILEE--  141 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~-----~-----------------~~~~~~~~~~~~~a~a~l~~~~~~--  141 (242)
                        ++|+++++ .++|++++++++++.+.+..     .                 .++++.++..++++.++++.+.++  
T Consensus       195 ~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~  273 (379)
T 3ke3_A          195 SAPQKGWSST-PCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGF  273 (379)
T ss_dssp             ECTTTTTCSC-CCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             ecchhhcCCC-CceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcH
Confidence              55999977 67899999998887765411     0                 112356677777777888877653  


Q ss_pred             -cHHHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC---------CCEE
Q psy6548         142 -NMIENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS---------NNII  210 (242)
Q Consensus       142 -~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------~~~l  210 (242)
                       ++.++.+++++++++.| +.++-....... ....+..+..+.  .+ ..+.+.|.++||.+.++.         .+.+
T Consensus       274 ~~~~~~~~~l~~~l~~~l-~~~g~~~~~~~~~~~~~i~~~~~~~--~~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~l  349 (379)
T 3ke3_A          274 DILRDAQWELGNRVRKVL-TDKGIESVAAEGFEAPGVVVSYTER--DD-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTF  349 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTCCBSBCTTCBCSSEEEEECSC--HH-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEE
T ss_pred             HHHHHHHHHHHHHHHHHH-HHcCCEecCCccccCceEEEEccCC--cc-hHHHHHHHHCCeEEeCCccccccccCcCCEE
Confidence             56788888999999999 666522211111 122233343332  12 223778889999987653         6799


Q ss_pred             EEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         211 RLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       211 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      |++++..+|++||++++++|+++++++..
T Consensus       350 Ris~~~~~t~~di~~~~~~l~~~l~~~~~  378 (379)
T 3ke3_A          350 RLGLFGLDKLTDIDGTVERFEKALDEVLA  378 (379)
T ss_dssp             EEECCSHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCcCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999988753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.88  E-value=7e-22  Score=167.93  Aligned_cols=215  Identities=13%  Similarity=0.119  Sum_probs=156.0

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++..  ......  ...|+++ 
T Consensus       124 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~  194 (416)
T 3isl_A          124 DPEDIIREIKKVKPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVDE--WKIDAAIG  194 (416)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTTT--TTCSEEEC
T ss_pred             CHHHHHHHHhhCCCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchhh--cCCCEEEe
Confidence            6666  4444367899999999999997776    8899999999999999999986 2111  111122  2457777 


Q ss_pred             -eeccccCCccchheeEeChhhhhccCCCC-------------------------------------CC-CCCCCCHHHH
Q psy6548          88 -LGKALSGGLYPISAVLADDEVMGTLVPGT-------------------------------------HG-STYGGNPLAC  128 (242)
Q Consensus        88 -~sK~~~~g~~~~g~~~~~~~~~~~l~~~~-------------------------------------~~-~~~~~~~~~~  128 (242)
                       ++|+++++ .++|+++.++++++.+.+..                                     .. ...+.+..++
T Consensus       195 s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (416)
T 3isl_A          195 GTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTML  273 (416)
T ss_dssp             CSSSTTCCC-SSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHH
T ss_pred             cCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHH
Confidence             55998877 78999999998887665321                                     11 1224466777


Q ss_pred             HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCe-EeeeceeEEEEecCCchhHHHHHHHHHHC-Cceec
Q psy6548         129 KLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPV-VRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTK  203 (242)
Q Consensus       129 ~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~  203 (242)
                      .++.++++.+..   +++.++++++++++.+.| ++++-..... ....+.++++.++.. .+..++.+.|.++ ||.++
T Consensus       274 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~  351 (416)
T 3isl_A          274 YALREGVRLVLEEGLETRFERHRHHEAALAAGI-KAMGLRLFGDDSCKMPVVTCVEIPGG-IDGESVRDMLLAQFGIEIA  351 (416)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHTTCCBCSCGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECB
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHcCCEeccCccccCCcEEEEeCCCC-CCHHHHHHHHHHhCCEEEe
Confidence            777777776654   357788889999999999 6654211111 112356788888654 5688999999887 99998


Q ss_pred             cC----CCCEEEEeccCcCCHHH-HHHHHHHHHHHHHHH
Q psy6548         204 PI----SNNIIRLSPALNITEQE-LREGLDIIINTINTM  237 (242)
Q Consensus       204 ~~----~~~~lR~~~~~~~t~e~-i~~~~~~l~~~l~~~  237 (242)
                      ++    .++++|++++...++++ +++++++|+++++++
T Consensus       352 ~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          352 SSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             CCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence            64    46799999877677777 999999999999875

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.88  E-value=1.7e-21  Score=163.55  Aligned_cols=212  Identities=15%  Similarity=0.183  Sum_probs=147.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...+++++++++++++|++|.+.+    +++|+++|++||+++|+||+|+..+..   +....++  .|+++  
T Consensus       133 d~~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~--~d~~~~s  203 (376)
T 3f0h_A          133 TKEKLYEYDNQNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECG--ADVMITG  203 (376)
T ss_dssp             CHHHHHTTTTSCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHT--CSEEEEE
T ss_pred             CHHHHHHhhccCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccC--ccEEEec
Confidence            4555 5556778999999999999997776    999999999999999999999743221   2223333  35555  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHhc----cHHHH
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTALDVILEE----NMIEN  146 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~a~a~l~~~~~~----~~~~~  146 (242)
                      ++|+++++ .++|+++.++++++.+.+...                 +..++.+..+++++.++++.+...    ++.++
T Consensus       204 ~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  282 (376)
T 3f0h_A          204 SQKVLACP-PGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVAR  282 (376)
T ss_dssp             TTTTTCCC-SSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CcccccCC-CceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66999966 678999999998877764211                 113344454556666777766543    35566


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEeccCcCCHH
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQ  221 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~~t~e  221 (242)
                      .+++++++++.| +.++..... ......++.+.. .. .+..++.+.|.++ ||.++++    +++++|++++..+|++
T Consensus       283 ~~~~~~~l~~~L-~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e  358 (376)
T 3f0h_A          283 IASQAADFRAKI-KDLPFELVS-ESPANGVTSVHP-TT-ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHE  358 (376)
T ss_dssp             HHHHHHHHHHHT-TTSSEEECC-SSBBTTEEEEEE-SS-SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHH
T ss_pred             HHHHHHHHHHHH-HHcCCccCc-cccCceEEEEeC-CC-CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHH
Confidence            666777777777 544311111 112233344433 22 4678999999998 9999865    3578999999889999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINT  236 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~  236 (242)
                      ++++++++|++++++
T Consensus       359 ~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          359 DNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.88  E-value=4.8e-21  Score=159.17  Aligned_cols=205  Identities=15%  Similarity=0.067  Sum_probs=151.8

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g   95 (242)
                      +++++|++++++|++|.+.+    +++|.++|++|  |+++|+||+|+ ++...  .....+  .+|+++  ++|+++++
T Consensus       120 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~  190 (352)
T 1iug_A          120 EGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP  190 (352)
T ss_dssp             SSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC
T ss_pred             cCCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC
Confidence            67889999999999998776    89999999999  99999999996 32221  111222  356666  56988876


Q ss_pred             ccchheeEeChhhhhccCC-------------C-CCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVP-------------G-THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~-------------~-~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~  159 (242)
                       .++|++++++++++.+.+             . .....++.+..++.++.++++.+..  ++..++++++++++.+.| 
T Consensus       191 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L-  268 (352)
T 1iug_A          191 -PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVG-  268 (352)
T ss_dssp             -SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHH-
T ss_pred             -CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence             678999999887665321             0 0122345667777777788887654  356778888999999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++++-.... ....+.++++.++.. .+..++.+.|.++||.+.++    +.+.+|++++...+++++++++++|+++++
T Consensus       269 ~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  346 (352)
T 1iug_A          269 EEGGLRPVP-KRFSPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE  346 (352)
T ss_dssp             HHTTCEESC-SSBCTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCcccc-cccCCeEEEEEcCCC-CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH
Confidence            655311111 112567888888743 46788999999999999876    367999999888899999999999999988


Q ss_pred             HH
Q psy6548         236 TM  237 (242)
Q Consensus       236 ~~  237 (242)
                      ++
T Consensus       347 ~~  348 (352)
T 1iug_A          347 EI  348 (352)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.88  E-value=6.8e-21  Score=161.92  Aligned_cols=214  Identities=17%  Similarity=0.205  Sum_probs=153.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+.. ...  .....+  .+|++++|
T Consensus       158 d~~~l~~~l~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~~~--~~di~~~s  228 (420)
T 1t3i_A          158 DLEHFKTLLSEKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAP-HYP--LDVQLI--DCDWLVAS  228 (420)
T ss_dssp             CHHHHHHHCCTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTT-TSC--CCHHHH--TCSEEEEE
T ss_pred             CHHHHHHhhCCCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccC-Ccc--Cchhhc--CCCEEEEe
Confidence            5565 4434568999999999999998776    899999999999999999999732 211  111222  36777755


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCC--------------------CCCCCHHHHHHHHH-HHHHHHh---ccH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS--------------------TYGGNPLACKLAMT-ALDVILE---ENM  143 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~a~a-~l~~~~~---~~~  143 (242)
                        |.++ + .++|++++++++++.+.+...++                    ..+.+++.+.++.+ +++.+..   +++
T Consensus       229 ~sK~~~-~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (420)
T 1t3i_A          229 GHKMCA-P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI  306 (420)
T ss_dssp             GGGTTS-C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hhhhcC-C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence              9665 3 34899999999988887654322                    12345555555444 6776654   456


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEe-----eeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------C-
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVR-----GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------S-  206 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------~-  206 (242)
                      .++.+++++++++.| ++++. +....+     ..+.++++.++.  .+..++.+.|.++||.+.++           + 
T Consensus       307 ~~~~~~~~~~l~~~L-~~~~g-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~  382 (420)
T 1t3i_A          307 HNYEVELTHYLWQGL-GQIPQ-LRLYGPNPKHGDRAALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDA  382 (420)
T ss_dssp             HHHHHHHHHHHHHHH-HTCTT-EEEESCCGGGSCBCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHH-HhCCC-eEEeCCCccccccCCEEEEEECC--CCHHHHHHHHHHCCeEEeeccccchHHHHhcCC
Confidence            788888999999999 66532 111111     136677777764  35778899999999999886           2 


Q ss_pred             CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         207 NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       207 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++.+|++++..++++++++++++|+++++.+.+
T Consensus       383 ~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          383 SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            678999999888999999999999999887643

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.87  E-value=4.8e-21  Score=161.61  Aligned_cols=216  Identities=13%  Similarity=0.140  Sum_probs=154.8

Q ss_pred             Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+. ++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++...  .....  ..+|+++
T Consensus       121 d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~--~~~d~~~  191 (392)
T 2z9v_A          121 DPQAVADMLKAHPEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPED--CKADIYV  191 (392)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGG--GTCSEEE
T ss_pred             CHHHHHHHHhcCCCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc--ccccc--ccceEEE
Confidence            5666  3343 457899999999999997776    8999999999999999999996 32221  11222  2357776


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCC--------------------CCCCCCCCHHHHHHHHHHHHHHHh---cc
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGT--------------------HGSTYGGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                        ++|+++++ .++|++++++++++.+.+..                    .....+.+..++.++.++++.+..   ++
T Consensus       192 ~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~  270 (392)
T 2z9v_A          192 TGPNKCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEA  270 (392)
T ss_dssp             ECSSSTTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ecCcccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence              56998876 67799999998877664210                    011234456666666777776654   34


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCC-eE-eeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEecc
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVP-VV-RGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPA  215 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~  215 (242)
                      +.++++++++++++.| ++++-.... .. ...+.++++.++.. .+..++.+.|.++ ||.+.++    ..+++|+++.
T Consensus       271 ~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~  348 (392)
T 2z9v_A          271 VWARHALTAKAMRAGV-TAMGLSVWAASDSIASPTTTAVRTPDG-VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHM  348 (392)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCCBSSSSGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCeeccCCccccCCceEEEECCCC-CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCc
Confidence            6788888999999999 655321111 10 12467788888643 4678899999998 9999875    3689999964


Q ss_pred             C-cCCHHHHHHHHHHHHHHHHHHh
Q psy6548         216 L-NITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       216 ~-~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      . .++++++++++++|+++++++.
T Consensus       349 ~~~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          349 GPTAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcC
Confidence            4 7899999999999999998764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.87  E-value=2.9e-21  Score=163.12  Aligned_cols=212  Identities=14%  Similarity=0.153  Sum_probs=153.5

Q ss_pred             CChhh-hcCCCC-CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA-KLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~-~~~~~~-~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++ +...+. ++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ ++...  ..  .....+|+++
T Consensus       146 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~~--~~~~~~di~~  216 (393)
T 1vjo_A          146 FSLEELRTALETHRPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP--IF--LDAWGVDLAY  216 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC--CC--TTTTTCSEEE
T ss_pred             CCHHHHHHHHhhCCceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC--Cc--ccccCccEEE
Confidence            45666 333233 7889999999999998776    7899999999999999999997 54321  12  2234568887


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCC-------CC------------CCCC-CCCHHHHHHHHHHHHHHHh---cc
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPG-------TH------------GSTY-GGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~-------~~------------~~~~-~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                        ++|+++++ .++|++++++++++.+...       ..            ...+ +.+++++.++.++++.+..   ++
T Consensus       217 ~s~sK~l~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~  295 (393)
T 1vjo_A          217 SCSQKGLGCS-PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLAN  295 (393)
T ss_dssp             CCSSSTTCSC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             EcCcccccCC-CceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHH
Confidence              45999977 5899999999888776321       11            1233 5678888888888887644   35


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeEee--eceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEec-
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVVRG--KGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSP-  214 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~-  214 (242)
                      +.++++++++++++.| ++++-.+. .+.+  .+.++++.++.. .+..++.+.|.++ ||.+.++    .++.+|+++ 
T Consensus       296 ~~~~~~~~~~~l~~~L-~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~  372 (393)
T 1vjo_A          296 CWQRHQKNVEYLWERL-EDIGLSLH-VEKEYRLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLM  372 (393)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCCBS-SCGGGBCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCccc-CCccccCCcEEEEEcCCC-CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCC
Confidence            6788899999999999 65532111 1111  235677777643 4678899999988 9999875    368999995 


Q ss_pred             cCcCCHHHHHHHHHHHHHHH
Q psy6548         215 ALNITEQELREGLDIIINTI  234 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++..+++++++++++|++++
T Consensus       373 ~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          373 GFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             GGGCSHHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHh
Confidence            45567778999999998875

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.87  E-value=2.1e-20  Score=157.03  Aligned_cols=215  Identities=16%  Similarity=0.158  Sum_probs=150.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++ +...+.++++|++++++|++|.+.+    +++|.++|++||  +++|+||+|+ ++..  .....  ...+|+++
T Consensus       128 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~~di~~  198 (384)
T 1eg5_A          128 KLEELEKLVDEDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLEVDYAS  198 (384)
T ss_dssp             CHHHHHHHCCTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTCCSEEE
T ss_pred             CHHHHHHHhCCCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcCCCEEE
Confidence            5566 4333458999999999999997776    899999999999  9999999996 4322  11222  22467877


Q ss_pred             ee--ccccCCccchheeEeChhh--hhccCCCC---CCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          88 LG--KALSGGLYPISAVLADDEV--MGTLVPGT---HGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ~s--K~~~~g~~~~g~~~~~~~~--~~~l~~~~---~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      +|  |.++.  .++||+++++++  ...+....   ...+++.+++++.++.++++.+.+  +++.++++++++++.+.|
T Consensus       199 ~s~sK~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  276 (384)
T 1eg5_A          199 FSAHKFHGP--KGVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL  276 (384)
T ss_dssp             EEGGGGTSC--TTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             ecHHHhcCC--CceEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            55  98772  126999998775  32332211   123456788888888888887543  456788888999999999


Q ss_pred             HhhcCCCCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEec
Q psy6548         159 RSRLSPDIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLSP  214 (242)
Q Consensus       159 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~~  214 (242)
                       +..+-....... ..+.++++.++.  .+..++.+.|.++||.+.++.                       .+++|+++
T Consensus       277 -~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  353 (384)
T 1eg5_A          277 -MNLGAHIITPLEISLPNTLSVSFPN--IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL  353 (384)
T ss_dssp             -HTTTCEECSCTTSBCTTEEEEECTT--CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred             -CCCCeEEeCCcccCCCCEEEEEeCC--CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC
Confidence             553211111001 134566777764  357889999999999998741                       36899998


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         215 ALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +..++++++++++++|+++++++.+
T Consensus       354 ~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          354 CKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999987644

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.87  E-value=1.2e-20  Score=159.95  Aligned_cols=214  Identities=13%  Similarity=0.084  Sum_probs=151.5

Q ss_pred             ccccCCC------Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc
Q psy6548           4 QFPVKSK------QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI   76 (242)
Q Consensus         4 ~~~~~~~------d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~   76 (242)
                      +..+|.+      |+++ +...++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++...  +..
T Consensus       141 v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~  213 (406)
T 3cai_A          141 VKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDI  213 (406)
T ss_dssp             EEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCH
T ss_pred             EEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCc
Confidence            3455655      6666 4444568999999999999997776    7899999999999999999996 22111  112


Q ss_pred             ccCCCCCCEEE--eeccccCCccchh-eeEeChhhhhccCCCCCC---------CCCCCCHHHHHHHHHHHHHHHh----
Q psy6548          77 HYEDVRPDIVI--LGKALSGGLYPIS-AVLADDEVMGTLVPGTHG---------STYGGNPLACKLAMTALDVILE----  140 (242)
Q Consensus        77 ~~~~~~~~~~~--~sK~~~~g~~~~g-~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~a~a~l~~~~~----  140 (242)
                      ..+  .+|+++  ++|.+++   ++| ++++++++++.+.+....         ...+.++.+++++.++++.+..    
T Consensus       214 ~~~--~~d~~~~s~~K~~g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~  288 (406)
T 3cai_A          214 RET--DADVVTVNAHAWGGP---PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDES  288 (406)
T ss_dssp             HHH--CCSEEEEEGGGGTSC---SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTT
T ss_pred             hhc--CCCEEEeehhhhcCC---CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccc
Confidence            222  357666  5698763   388 999999988888765321         1234566777666777776653    


Q ss_pred             -------------ccHHHHHHHHHHHHHHHHHhhcCCC-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC
Q psy6548         141 -------------ENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS  206 (242)
Q Consensus       141 -------------~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  206 (242)
                                   +++.++.+++++++.+.| +.++.. +.......+.++++.++.  .+..++.+.|.++||.+.++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gi~v~~g~  365 (406)
T 3cai_A          289 ARGSRRERLAVSMQSADAYLNRVFDYLMVSL-RSLPLVMLIGRPEAQIPVVSFAVHK--VPADRVVQRLADNGILAIANT  365 (406)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCTTEEECCCCSSBCSEEEEEETT--BCHHHHHHHHHHTTEECEECC
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHHHH-hcCCCeEEcCCccccCCEEEEEECC--cCHHHHHHHHHHCCcEEecCC
Confidence                         345677778888888888 555321 111111124467787764  357889999999999998753


Q ss_pred             -------------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         207 -------------NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       207 -------------~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                                   .+.+|++++..++++++++++++|++
T Consensus       366 ~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          366 GSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             SCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence                         47899999988899999999999865

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.87  E-value=3.7e-21  Score=168.99  Aligned_cols=222  Identities=13%  Similarity=0.065  Sum_probs=147.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHH-hhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~-~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...++++++|+++.++|++|. +.+.+.+++|+++|+ +||+++|+||+|.++...+........+....+.+|
T Consensus       233 d~~~l~~~l~~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~  311 (533)
T 3f6t_A          233 EPNEIEKLKDPSIKALIVVNPTNPTSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSY  311 (533)
T ss_dssp             CHHHHHHHSCTTEEEEEEESSCTTTCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEES
T ss_pred             CHHHHHHHhCCCCeEEEEeCCCCCCcc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecC
Confidence            4555 4444568999999888999995 556778999999999 699999999999877543322211111122234458


Q ss_pred             ecccc-CCccchheeEeChh-----hhhcc--------------------------------CCCCCCCCCCCCHHHHHH
Q psy6548          89 GKALS-GGLYPISAVLADDE-----VMGTL--------------------------------VPGTHGSTYGGNPLACKL  130 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~-----~~~~l--------------------------------~~~~~~~~~~~~~~~~~~  130 (242)
                      ||.+| +| +|+||++++++     +++.+                                .......+.+.+++++.+
T Consensus       312 SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a  390 (533)
T 3f6t_A          312 SKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM  390 (533)
T ss_dssp             HHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHH
T ss_pred             cccCCCcc-cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHH
Confidence            99998 88 99999998876     54443                                233334445566666665


Q ss_pred             ----HHHHHH------HH--HhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-------------
Q psy6548         131 ----AMTALD------VI--LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------------  185 (242)
Q Consensus       131 ----a~a~l~------~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------  185 (242)
                          +.+++.      ..  ..+...+.++++++.+.+.| . ++  +....+..+++.|+.++...             
T Consensus       391 ~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L-~-~~--~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~  466 (533)
T 3f6t_A          391 EALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAM-Q-AP--KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT  466 (533)
T ss_dssp             HHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHH-T-CC--CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhc-C-CC--ccccCCCceEEEEEehHhhhhhccchHHHHHhh
Confidence                333331      00  01234566677777777777 4 43  22233456788888876310             


Q ss_pred             --hhHHHHHHHHH-HCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         186 --LEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       186 --~~~~~~~~~l~-~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                        .+..++..++. ++||.+.|+     +.+++|+++.. .+++++++++++|.++++++.+
T Consensus       467 ~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          467 NNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             HHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence              13445555554 779999886     36899999633 5899999999999999988654

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.87  E-value=3.6e-20  Score=157.81  Aligned_cols=213  Identities=14%  Similarity=0.185  Sum_probs=152.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+.++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+. +..  ..  ......+|++++|
T Consensus       152 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~--~~--~~~~~~~di~~~s  222 (423)
T 3lvm_A          152 DLKELEAAMRDDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL--PI--DLSQLKVDLMSFS  222 (423)
T ss_dssp             CHHHHHHHCCTTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS--CC--CTTTSCCSEEEEE
T ss_pred             CHHHHHHhcCCCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC--Cc--ChhhcCCCEEEec
Confidence            6777 4444568999999999999997776    89999999999999999999863 111  11  2223356888755


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |.++ + .++|+++++++.++.+.+...+       ...+.++.+++++.++++.+..  +++.++.+++++++++.|
T Consensus       223 ~sK~~g-~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  300 (423)
T 3lvm_A          223 GHKIYG-P-KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI  300 (423)
T ss_dssp             STTTTS-C-SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcC-C-CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              9665 3 4589999998887777764332       2334566777777677776654  567788888889999988


Q ss_pred             HhhcCCC-CCC-eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         159 RSRLSPD-IVP-VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                       +.++.. ... .....+.++.+.+..  .+..++.+.|.+  +.+.++.                       .+.+|++
T Consensus       301 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  375 (423)
T 3lvm_A          301 -KDIEEVYLNGDLEHGAPNILNVSFNY--VEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS  375 (423)
T ss_dssp             -TTSTTEEEESCSTTBCTTEEEEEETT--SCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEE
T ss_pred             -hcCCCEEEeCCccccCCCeEEEEeCC--CCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEE
Confidence             666321 111 001123456666644  467788888876  7776542                       3889999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++..++++++++++++|+++++++.+
T Consensus       376 ~~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          376 LGRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            99899999999999999999988654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.86  E-value=3.4e-22  Score=169.96  Aligned_cols=204  Identities=13%  Similarity=0.121  Sum_probs=142.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC---cccccccCC-CCCC---EEEeeccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG---KLLAIHYED-VRPD---IVILGKAL   92 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~~-~~~~---~~~~sK~~   92 (242)
                      .++.+++++.++|++|. +++.+++++|+++|++||+++|+||+|.+++..|   .......+. ...+   +.++||++
T Consensus       182 ~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  260 (412)
T 1ajs_A          182 EFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF  260 (412)
T ss_dssp             TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS
T ss_pred             CCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccccc
Confidence            36788888999999985 6778899999999999999999999999886654   222222111 1222   33489999


Q ss_pred             cC-CccchheeEe---Chh----hhhccCCCCCCCCCC-CCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHH
Q psy6548          93 SG-GLYPISAVLA---DDE----VMGTLVPGTHGSTYG-GNPLACKLAMTALDVIL--------EENMIENAYKMGEIFR  155 (242)
Q Consensus        93 ~~-g~~~~g~~~~---~~~----~~~~l~~~~~~~~~~-~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~~~~l~  155 (242)
                      +. | +|+||+++   +++    +++.+... ...++. .+++++.++.++++...        .++..++++++++++.
T Consensus       261 ~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  338 (412)
T 1ajs_A          261 GLYN-ERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELR  338 (412)
T ss_dssp             CCGG-GCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-cceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            95 9 99999998   776    33333321 223444 47888888888887542        1456778888899999


Q ss_pred             HHHHhhcC-C-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         156 SELRSRLS-P-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       156 ~~l~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +.| +.++ . .+....+..+++.|+.++     .+.+.+.+.++||.+.++    +|++++. .+++++++++++|+++
T Consensus       339 ~~L-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~  407 (412)
T 1ajs_A          339 ARL-EALKTPGTWNHITDQIGMFSFTGLN-----PKQVEYLINQKHIYLLPS----GRINMCG-LTTKNLDYVATSIHEA  407 (412)
T ss_dssp             HHH-HHTTCSSCCHHHHHCCSSEEECCCC-----HHHHHHHHHTTCEECCTT----SEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred             HHH-HhhCCCCCeeEEcCCCceEEEeCCC-----HHHHHHHHHhCCEEecCC----cEEEeee-CCHHHHHHHHHHHHHH
Confidence            999 6654 1 122222345666665432     344555666889999875    5999764 4899999999999999


Q ss_pred             HHHH
Q psy6548         234 INTM  237 (242)
Q Consensus       234 l~~~  237 (242)
                      ++++
T Consensus       408 l~~~  411 (412)
T 1ajs_A          408 VTKI  411 (412)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.86  E-value=7.3e-21  Score=158.39  Aligned_cols=201  Identities=13%  Similarity=0.103  Sum_probs=145.4

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC---EEEeecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD---IVILGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~---~~~~sK~~~-~g   95 (242)
                      +++++++++.++|++|.+.+ .+.+++|+++|+++  ++|+||+|.+++..+.... ...+....   +.++||+++ +|
T Consensus       128 ~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~-~~~~~~~~~i~~~S~sK~~~~~G  203 (350)
T 3fkd_A          128 SNMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP-ADIKGRKNLVMVYSFSHAYGIPG  203 (350)
T ss_dssp             TTCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG-GGGTTCSSEEEEEESHHHHSCGG
T ss_pred             CCCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhh-HHhhcCCCEEEEecCchhccCcc
Confidence            67888999999999996655 45566666666554  9999999988765543211 11122222   334889999 88


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                       +|+||+++++++++.+....  .+++.+++++.++.++++...  .+...+ ..++++++.+.| +.++.  ....++.
T Consensus       204 -~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L-~~~~~--~~~~~~~  276 (350)
T 3fkd_A          204 -LRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITAL-NRLDG--VEVHPSG  276 (350)
T ss_dssp             -GCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHH-HHSTT--EEECCCS
T ss_pred             -hheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHH-hcCCC--cEECCCC
Confidence             99999999999998887643  456788888888888877543  123333 448888888888 66632  1123455


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHH-CCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +.++++.++..  +..++.+.|.+ +||.+.++.      .+++|+++   .++++++++++.|+++.++
T Consensus       277 ~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          277 TTFFLLRLKKG--TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITT---QRPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             SSEEEEEESSS--CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHHTC
T ss_pred             CcEEEEECCCC--CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHHH
Confidence            77888888764  67889999999 999998752      67999993   3888999999999887765

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.3e-20  Score=155.84  Aligned_cols=195  Identities=13%  Similarity=0.112  Sum_probs=139.2

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~   98 (242)
                      .++++++++.++|++|.+.+    ++++.++|++++. +|+||+|.+|+..+.. .....+....+.++||.++ +| +|
T Consensus       134 ~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G-~r  206 (337)
T 3p1t_A          134 SRDDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAG-LR  206 (337)
T ss_dssp             CTTEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTT-TC
T ss_pred             cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcc-hh
Confidence            46789999999999997776    7778889999997 5669999877544321 1111111112334889998 89 99


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN  177 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~  177 (242)
                      +||+++++++++.+.+.  ...++.+++++.++.++++.... ++..+++.++++++.+.| +.++  + ...++.+.++
T Consensus       207 ~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~-~~~~~~~~~~  280 (337)
T 3p1t_A          207 LGALFGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADAL-RGLG--Y-RVASSEANFV  280 (337)
T ss_dssp             CEEEECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH-HHTT--C-CBCCCSSSEE
T ss_pred             eEEEEeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCc--C-EECCCCCeEE
Confidence            99999999999888763  34556778888777777664321 334566677788888888 6654  2 1223445677


Q ss_pred             EEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         178 AIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++..+..    ..+.+.|.++||.+.++.    ++++|++++   ++++++++++.|+++.
T Consensus       281 ~~~~~~~----~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          281 LVENAAG----ERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             EEECTTT----HHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             EEEcCCH----HHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence            7776543    567788999999998763    589999943   7899999999998764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.86  E-value=4.6e-21  Score=158.80  Aligned_cols=195  Identities=12%  Similarity=0.079  Sum_probs=139.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEEEeecccc-CCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVILGKALS-GGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~~sK~~~-~g~~   97 (242)
                      +++++|+++.++|++|.+. +.+.+++++++|   | ++|+||+|+++... .... .+..+....+.++||+++ +| +
T Consensus       137 ~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G-~  209 (335)
T 1uu1_A          137 GEGDVVFIPNPNNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAA-Q  209 (335)
T ss_dssp             CTTEEEEEESSCTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGG-G
T ss_pred             CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcc-c
Confidence            4678888777789999655 555555555554   8 89999999876421 1111 122222223345899998 89 9


Q ss_pred             chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeecee
Q psy6548          98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL  176 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~  176 (242)
                      |+||+++++++++.+.+.  ..+++.+++++.++.++++..+ .++..++++++++++.+.| +.++  +.. .+..+++
T Consensus       210 r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~-~~~~~~~  283 (335)
T 1uu1_A          210 RVGYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL-REMG--YRI-TDSRGNF  283 (335)
T ss_dssp             CCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-HHHT--CCB-CCCCSSE
T ss_pred             CeEEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--cEE-cCCCCeE
Confidence            999999999988877652  2346788899888888887532 2446677888889999999 5553  211 2345678


Q ss_pred             EEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         177 NAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +|+.++.  .+..++.+.|.++||.+.+ .++++|+++   .+++++++++++|+++
T Consensus       284 ~~~~~~~--~~~~~~~~~l~~~gi~v~~-~~~~iRis~---~~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          284 VFVFMEK--EEKERLLEHLRTKNVAVRS-FREGVRITI---GKREENDMILRELEVF  334 (335)
T ss_dssp             EEEECCT--HHHHHHHHHHHHHTEEEEE-ETTEEEEEC---CCHHHHHHHHHHHHCC
T ss_pred             EEEECCC--CCHHHHHHHHHHCCEEEEE-CCCeEEEEe---CCHHHHHHHHHHHHhh
Confidence            8888865  4677899999999999998 478999995   3578899999998753

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.86  E-value=3.3e-20  Score=155.44  Aligned_cols=212  Identities=12%  Similarity=0.139  Sum_probs=148.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...++++++|++++++|++|.+.+    +++|.++|++||+ +|+|++|+ ++..  ......+  ..|+++  
T Consensus       127 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~s  196 (382)
T 4hvk_A          127 DVSFIDQKLRDDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTIS  196 (382)
T ss_dssp             CHHHHHHHCCTTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEEE
T ss_pred             CHHHHHHHhccCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEEe
Confidence            5666 4444568999999999999997776    8899999999999 99999986 2111  1111222  346666  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      ++|.++ + .++|+++++++.  .+.+...++       ..+.+..++.++.++++.+..  +++.++.+++++++++.|
T Consensus       197 ~~K~~g-~-~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  272 (382)
T 4hvk_A          197 SNDIYG-P-KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNV  272 (382)
T ss_dssp             SGGGTS-C-TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-C-CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            569765 3 457888776654  333332211       234466777777777775543  456788888889999988


Q ss_pred             HhhcCCC-CCC-eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         159 RSRLSPD-IVP-VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                       +.++.. ... .....+.++++.++.  .+..++.+.|.++||.++++.                       .+.+|++
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~  349 (382)
T 4hvk_A          273 -LKIEESYLNGHPEKRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT  349 (382)
T ss_dssp             -TTSTTEEECSCSSSBCTTEEEEEETT--CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEE
T ss_pred             -hcCCCeEEeCCccccCCCEEEEEECC--CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEE
Confidence             665421 111 111123466777765  367889999999999998752                       5789999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++..++++++++++++|+++++++.+
T Consensus       350 ~~~~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          350 LGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99889999999999999999988754

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.86  E-value=1.5e-20  Score=158.74  Aligned_cols=216  Identities=16%  Similarity=0.136  Sum_probs=153.0

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++  +.+.++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|. ++..  .....  ...+|+++
T Consensus       130 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~  200 (396)
T 2ch1_A          130 FSLETLARAIELHQPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVY  200 (396)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEE
T ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEE
Confidence            45555  3333336889999999999997776    8899999999999999999997 4322  11222  23467777


Q ss_pred             e--eccccCCccchheeEeChhhhhccCCCC-----------------------CCCCCCCCHHHHHHHHHHHHHHHh--
Q psy6548          88 L--GKALSGGLYPISAVLADDEVMGTLVPGT-----------------------HGSTYGGNPLACKLAMTALDVILE--  140 (242)
Q Consensus        88 ~--sK~~~~g~~~~g~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~a~a~l~~~~~--  140 (242)
                      +  +|+++++ .++|++++++++++.+....                       ....++.+..++.++.++++.+..  
T Consensus       201 ~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  279 (396)
T 2ch1_A          201 TGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEG  279 (396)
T ss_dssp             CCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             EcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence            4  5999877 67899999988877653210                       111234566677777778887543  


Q ss_pred             -ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe---eeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEE
Q psy6548         141 -ENMIENAYKMGEIFRSELRSRLSPDIVPVVR---GKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIR  211 (242)
Q Consensus       141 -~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR  211 (242)
                       ++..++++++++++.+.| ++++-.... ..   ..+.++++.++.. .+..++.++|.++ ||.+.++    .++.+|
T Consensus       280 ~~~~~~~~~~~~~~l~~~L-~~~g~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iR  356 (396)
T 2ch1_A          280 LENQIKRRIECAQILYEGL-GKMGLDIFV-KDPRHRLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWR  356 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHTCCBSS-CSGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHCCCeecc-CCccccCCceEEEEcCCC-CCHHHHHHHHHHhCCEEEecCccccCCCEEE
Confidence             346788888999999999 665421111 11   1234778887643 4678899999876 9999875    467999


Q ss_pred             Eec-cCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         212 LSP-ALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       212 ~~~-~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      +++ ++..+++++++++++|+++++++.
T Consensus       357 i~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          357 VGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             EECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence            998 456689999999999999998764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.86  E-value=1.6e-20  Score=164.22  Aligned_cols=225  Identities=13%  Similarity=0.065  Sum_probs=152.0

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-----cCc
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-----TGK   72 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-----~g~   72 (242)
                      ++.+|.+     |+++ +...+.++++|++++++|++|.+.+    +++|+++|++||+++|+||+|.++..     .|.
T Consensus       216 v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~  291 (514)
T 3mad_A          216 LVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGY  291 (514)
T ss_dssp             EEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred             eEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence            4456665     6777 4444568999999999999997765    89999999999999999999987522     222


Q ss_pred             ---ccccccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCC----C-----CC--CCCCCHHHHHHHHHHHH
Q psy6548          73 ---LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT----H-----GS--TYGGNPLACKLAMTALD  136 (242)
Q Consensus        73 ---~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~----~-----~~--~~~~~~~~~~~a~a~l~  136 (242)
                         .+.....+  .|+++  ++|++.+| .++|+++.+++.........    .     ..  ..+.+.....+++++++
T Consensus       292 ~~~~~~~~~~g--~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~  368 (514)
T 3mad_A          292 PVPPFDFRLEG--VTSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAML  368 (514)
T ss_dssp             CCCCCSTTSTT--CCEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCC--CcEEEECchhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHH
Confidence               12222233  36666  55998888 89999988766544322110    0     01  11223333444555555


Q ss_pred             HHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEE
Q psy6548         137 VILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRL  212 (242)
Q Consensus       137 ~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~  212 (242)
                      .+..   +++.++.+++++++++.| ++++...... +. ..++++....  .+..++.+.|.++||.+... .++.+|+
T Consensus       369 ~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~g~~~~~-~~-~~~~~~~~~~--~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri  443 (514)
T 3mad_A          369 SLGEEGYLDATRRILQAADRLKAGV-RAIPSLKILG-DP-LWVIAVASDE--LNIYQVMEEMAGRGWRLNGLHRPPAFHV  443 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCEESS-CC-SSEEEEECSS--SCHHHHHHHHHTTTCBCEEETTTTEEEE
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH-hhCCCeEEeC-CC-eEEEEEeCCC--CCHHHHHHHHHhcCCEeccCCCCCeEEE
Confidence            5443   456788888999999999 6654211111 11 3466666543  46788999999999988432 3678999


Q ss_pred             ecc-CcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         213 SPA-LNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       213 ~~~-~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++. ...+++++++++++|+++++++.++
T Consensus       444 ~~~~~~~~~e~i~~~l~~L~~~l~~~~~~  472 (514)
T 3mad_A          444 ALTLRHTEPGVVDRFLADLQDAVAQVRAH  472 (514)
T ss_dssp             ECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            976 4446699999999999999887653

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.86  E-value=6e-21  Score=158.56  Aligned_cols=218  Identities=13%  Similarity=0.174  Sum_probs=146.5

Q ss_pred             Chhh--hcCCC-----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCC
Q psy6548          11 QVPA--KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDV   81 (242)
Q Consensus        11 d~~~--~~~~~-----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~   81 (242)
                      |+++  +.+.+     +++++|++++++|++|+.+.+.+.+++|+++|++||+++|+||+|..  +...+...  .....
T Consensus       115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~  192 (347)
T 1jg8_A          115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV--KEYAG  192 (347)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH--HHHHH
T ss_pred             CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCCh--HHhcc
Confidence            5666  44443     27999999999999944666778899999999999999999998741  11112111  11111


Q ss_pred             CCCE--EEeeccccCCccchh-eeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDI--VILGKALSGGLYPIS-AVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~--~~~sK~~~~g~~~~g-~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|.  +++||+++++   +| ++++++++++.+...  ..+.+...+.+.++++..+++... +. .++..++++.+++
T Consensus       193 ~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~  267 (347)
T 1jg8_A          193 YADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLAL  267 (347)
T ss_dssp             TCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHH
T ss_pred             cccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHH
Confidence            2243  3489999854   56 466788777665431  122333345555555555665321 22 3444567788888


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .| ++++..+. ..+..+.++|+.++....+..++.++|.++||.+++.+.+.+|++++...+++++++++++|++++++
T Consensus       268 ~L-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          268 KL-KEIGYSVN-PEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             HH-HHHTCBCC-GGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HH-HhcCceec-cCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            89 55532111 12345677888887422467889999999999999877789999998888999999999999998865


Q ss_pred             H
Q psy6548         237 M  237 (242)
Q Consensus       237 ~  237 (242)
                      +
T Consensus       346 ~  346 (347)
T 1jg8_A          346 F  346 (347)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.85  E-value=3.7e-21  Score=167.83  Aligned_cols=213  Identities=12%  Similarity=0.055  Sum_probs=145.4

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--cccc----ccCCC---CCCEE---Ee
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAI----HYEDV---RPDIV---IL   88 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~----~~~~~---~~~~~---~~   88 (242)
                      ++++|+++.++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+.  ...+    ..++.   ..+++   ++
T Consensus       237 ~~k~ivl~~p~NPtG~-~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~  315 (500)
T 3tcm_A          237 NVRALVVINPGNPTGQ-VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSV  315 (500)
T ss_dssp             EEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEES
T ss_pred             CceEEEEECCCCCCcc-cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecC
Confidence            7888888888999995 55678899999999999999999999987543221  1111    11211   12233   48


Q ss_pred             eccc-c-CCccchheeEe---ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHH
Q psy6548          89 GKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHGSTYGGNPLACKLAMTALD-----------VILE-ENMIENAYKMG  151 (242)
Q Consensus        89 sK~~-~-~g~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~-----------~~~~-~~~~~~~~~~~  151 (242)
                      ||+| | +| +|+||+++   ++++++.+.... ...++.+++++.++..+++           ..+. +.+.+.+++++
T Consensus       316 SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  393 (500)
T 3tcm_A          316 SKGYYGECG-KRGGYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRA  393 (500)
T ss_dssp             SSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCc-cceEEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            9999 5 68 99999987   888887776432 2345567777777666654           2222 44667788889


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCch-----------hHHHH-HHHHHHCCceeccC-------CCCEEEE
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL-----------EVYDV-CIKMKDAGLVTKPI-------SNNIIRL  212 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~l~~~gi~~~~~-------~~~~lR~  212 (242)
                      +.+++.| +.++. +....+..+++.|+.+..+..           ....+ .+.|.++||.+.|+       +.+++|+
T Consensus       394 ~~l~~~L-~~~~g-~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRi  471 (500)
T 3tcm_A          394 KALEHAF-NKLEG-ITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRC  471 (500)
T ss_dssp             HHHHHHH-HTSTT-EECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEE
T ss_pred             HHHHHHH-hcCCC-cEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEE
Confidence            9999999 66632 222233456677755443211           12223 35566779999864       3457999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         213 SPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++.  .+++++++++++|+++++++.++
T Consensus       472 s~~--~~~e~i~~~i~~l~~~~~~~~~~  497 (500)
T 3tcm_A          472 TIL--PQEDKIPAVISRFTVFHEAFMSE  497 (500)
T ss_dssp             ESC--SCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            966  79999999999999999887653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.85  E-value=1.3e-20  Score=158.93  Aligned_cols=218  Identities=13%  Similarity=0.101  Sum_probs=151.6

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++  +.+.+.++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+ ++..  ......  ..+|+++
T Consensus       131 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~  201 (393)
T 2huf_A          131 LSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMY  201 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEE
T ss_pred             CCHHHHHHHHhccCCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEE
Confidence            35555  3333327889999999999997776    8899999999999999999985 3322  111222  2467777


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCC---C-------------------CCC-CCCCHHHHHHHHHHHHHHHh--
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGT---H-------------------GST-YGGNPLACKLAMTALDVILE--  140 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~---~-------------------~~~-~~~~~~~~~~a~a~l~~~~~--  140 (242)
                        ++|+++|+ .++|++++++++++.+.+..   .                   ..+ .+.+..+++++.++++.+..  
T Consensus       202 ~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  280 (393)
T 2huf_A          202 TGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEG  280 (393)
T ss_dssp             CCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence              56998755 55699999998887765420   0                   111 13455666666667776643  


Q ss_pred             -ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEe
Q psy6548         141 -ENMIENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLS  213 (242)
Q Consensus       141 -~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~  213 (242)
                       ++..++++++++++++.| +.++-....... ..+.++++.++.. .+..++.+.|.++ ||.+.++    ..+++|++
T Consensus       281 ~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~  358 (393)
T 2huf_A          281 LPALIARHEDCAKRLYRGL-QDAGFELYADPKDRLSTVTTIKVPQG-VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIG  358 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHTTCCBSSCGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHcCCeeccCccccCCcEEEEEcCCC-CCHHHHHHHHHHhCCEEEecCcccccCCEEEEE
Confidence             346788889999999999 665321111111 1245777887643 4678899999875 9999875    46799999


Q ss_pred             c-cCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 P-ALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~-~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      + ++..+++++++++++|+++++++..
T Consensus       359 ~~~~~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          359 LMGQNATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             CCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence            8 4445799999999999999987654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.85  E-value=3.3e-22  Score=169.03  Aligned_cols=210  Identities=12%  Similarity=0.078  Sum_probs=140.7

Q ss_pred             Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC--cccccccCCC-CC
Q psy6548          11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG--KLLAIHYEDV-RP   83 (242)
Q Consensus        11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~-~~   83 (242)
                      |+++  +.+.+  .++++++++.++|++|. +++.+++++|+++|++||+++|+||+|.+++..+  .......+.. ..
T Consensus       158 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
T 2q7w_A          158 DFDALINSLNEAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHK  236 (396)
T ss_dssp             CHHHHHHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCS
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCC
Confidence            5666  44443  25788888999999995 6677899999999999999999999998876543  2112221111 12


Q ss_pred             C---EEEeecccc-CCccchheeEe---Ch----hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH------H--hccHH
Q psy6548          84 D---IVILGKALS-GGLYPISAVLA---DD----EVMGTLVPGTHGSTYGGNPLACKLAMTALDVI------L--EENMI  144 (242)
Q Consensus        84 ~---~~~~sK~~~-~g~~~~g~~~~---~~----~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~------~--~~~~~  144 (242)
                      +   +.++||+++ +| +|+||+++   ++    ++++.+.........+.+++++.++.++++..      .  -++..
T Consensus       237 ~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~  315 (396)
T 2q7w_A          237 ELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR  315 (396)
T ss_dssp             CEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred             cEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence            2   234889999 89 99999986   55    34444432111222234788888877777543      1  13356


Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         145 ENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      ++++++++.+.+.| +.++.  .+....+..++++|+.++     .+.+.+.|.++||.+.++    +|++++.. ++++
T Consensus       316 ~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~----~Ris~~~~-~~e~  384 (396)
T 2q7w_A          316 QRIQRMRQLFVNTL-QEKGANRDFSFIIKQNGMFSFSGLT-----KEQVLRLREEFGVYAVAS----GRVNVAGM-TPDN  384 (396)
T ss_dssp             CHHHHHHHHHHHHH-HHTTCCSCCTHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT----CEEEGGGC-CTTT
T ss_pred             HHHHHHHHHHHHHH-HhcCCCCCcceecCCCceEEEecCC-----HHHHHHHHHhcCeeecCC----ceEEEeec-CHHH
Confidence            67788888888888 66542  122223345667666442     245666777899999874    69997754 8999


Q ss_pred             HHHHHHHHHHH
Q psy6548         223 LREGLDIIINT  233 (242)
Q Consensus       223 i~~~~~~l~~~  233 (242)
                      +++++++|+++
T Consensus       385 i~~~~~~l~~~  395 (396)
T 2q7w_A          385 MAPLCEAIVAV  395 (396)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.85  E-value=1.3e-20  Score=162.86  Aligned_cols=215  Identities=13%  Similarity=0.161  Sum_probs=155.8

Q ss_pred             Chhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          11 QVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      |+++  +.+.  .+++++|++++++|++|.+.+    +++|.++|++||+++|+|++|+ .+..  +.....+  ..|++
T Consensus       200 d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~~--~~D~~  270 (465)
T 3e9k_A          200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHDW--GVDFA  270 (465)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHHH--TCCEE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhhc--CCCEE
Confidence            4566  4443  258999999999999998876    8999999999999999999996 2211  1111222  35676


Q ss_pred             E--eecccc-CCccchheeEeChhhhhccCCCCCCC---------------C----------CCCCHHHHHHHHHHHHHH
Q psy6548          87 I--LGKALS-GGLYPISAVLADDEVMGTLVPGTHGS---------------T----------YGGNPLACKLAMTALDVI  138 (242)
Q Consensus        87 ~--~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~---------------~----------~~~~~~~~~~a~a~l~~~  138 (242)
                      +  ++|+++ |+ .++|+++.++++.+.+.+...++               .          .+.+.+++++..++++.+
T Consensus       271 ~~s~~K~l~~gp-~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~  349 (465)
T 3e9k_A          271 CWCSYKYLNAGA-GGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIF  349 (465)
T ss_dssp             EECSSSTTCCCT-TCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred             EECcccccccCC-CceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHH
Confidence            6  569996 44 56899999998887776543221               0          145567777777888877


Q ss_pred             Hh---ccHHHHHHHHHHHHHHHHHhhc----------CC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCcee
Q psy6548         139 LE---ENMIENAYKMGEIFRSELRSRL----------SP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT  202 (242)
Q Consensus       139 ~~---~~~~~~~~~~~~~l~~~l~~~l----------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  202 (242)
                      ..   +++.++.+++++++.+.| +.+          .. .+..  .....|.++++.++.   +..++.+.|.++||.+
T Consensus       350 ~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~---~~~~l~~~L~~~Gi~v  425 (465)
T 3e9k_A          350 KQATMKALRKKSVLLTGYLEYLI-KHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV---PNKDVFQELEKRGVVC  425 (465)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHH-HHHCC---------CEEECSCSSGGGBCSCEEEEECC---TTCCHHHHHHTTTEEC
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHH-HhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC---CHHHHHHHHHHCCEEE
Confidence            54   457788889999999999 543          11 1111  122247788888763   3567899999999999


Q ss_pred             ccCCCCEEEEec-cCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         203 KPISNNIIRLSP-ALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       203 ~~~~~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ....++.+|+++ +.+++++|++++++.|++++++...
T Consensus       426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~~  463 (465)
T 3e9k_A          426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAET  463 (465)
T ss_dssp             EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred             ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhccc
Confidence            877789999998 8999999999999999999876543

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.85  E-value=2e-20  Score=156.16  Aligned_cols=214  Identities=11%  Similarity=0.012  Sum_probs=142.9

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC--ccCcccccccCCCCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--RTGKLLAIHYEDVRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~--~~g~~~~~~~~~~~~~~~-   86 (242)
                      |+++ +.. .+++++|++++++|++|+.+++.+++++|+++|++||+++|+||+|..+.  ..+...  ..+....|++ 
T Consensus       127 d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~  203 (359)
T 3pj0_A          127 TIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSA--EEICALFDSVY  203 (359)
T ss_dssp             CHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH--HHHHTTCSEEE
T ss_pred             CHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH--HHhhccCCEEE
Confidence            5565 444 67899999999988876678888999999999999999999999985321  111111  1111234555 


Q ss_pred             -EeeccccCCccchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          87 -ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        87 -~~sK~~~~g~~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       ++||+++++ .+ |++++++++++.+...  ..+.+.......++++.++++...  +..++.+++++++++.| ++++
T Consensus       204 ~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~l~~~L-~~~~  278 (359)
T 3pj0_A          204 VSFYKGIGGI-AG-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRI--GKMAEYFEAAKGLAERF-NSCS  278 (359)
T ss_dssp             EESSSTTCCS-SC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHG--GGHHHHHHHHHHHHHHH-HTST
T ss_pred             EeccccCCCc-ce-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHH-hhCC
Confidence             488999866 44 7788899888877642  122222223333334445555432  34556778888999999 6653


Q ss_pred             CCCCC-eEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC------CCCEEEEecc---CcCCHHHHHHHHHHHHH
Q psy6548         164 PDIVP-VVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI------SNNIIRLSPA---LNITEQELREGLDIIIN  232 (242)
Q Consensus       164 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~---~~~t~e~i~~~~~~l~~  232 (242)
                      . +.. ..+..+.++++.++... .+...+.+.|.++||.+.++      +.+++|++..   ...+.+++++++++|.+
T Consensus       279 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~  357 (359)
T 3pj0_A          279 G-VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEK  357 (359)
T ss_dssp             T-EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred             C-ceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence            2 111 11345667788776542 34678999999999999886      2457899753   34689999999999876


Q ss_pred             H
Q psy6548         233 T  233 (242)
Q Consensus       233 ~  233 (242)
                      .
T Consensus       358 ~  358 (359)
T 3pj0_A          358 E  358 (359)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.84  E-value=1.3e-21  Score=165.29  Aligned_cols=210  Identities=14%  Similarity=0.084  Sum_probs=141.3

Q ss_pred             Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC--cccccccC-CCCC
Q psy6548          11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG--KLLAIHYE-DVRP   83 (242)
Q Consensus        11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~-~~~~   83 (242)
                      |+++  +.+.+  .+++++++++++|++|. +++.+++++|+++|++||+++|+||+|++++..+  .......+ ...+
T Consensus       155 d~~~l~~~l~~~~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  233 (394)
T 2ay1_A          155 DFEGMKADLAAAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIP  233 (394)
T ss_dssp             CHHHHHHHHHTCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCC
Confidence            4555  33433  34788888999999995 5677899999999999999999999999876543  11111111 1123


Q ss_pred             CEE---Eeecccc-CCccchheeEe---ChhhhhccCCC---CCCCCC-CCCHHHHHHHHHHHHHH--------HhccHH
Q psy6548          84 DIV---ILGKALS-GGLYPISAVLA---DDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVI--------LEENMI  144 (242)
Q Consensus        84 ~~~---~~sK~~~-~g~~~~g~~~~---~~~~~~~l~~~---~~~~~~-~~~~~~~~~a~a~l~~~--------~~~~~~  144 (242)
                      +++   ++||+++ +| +|+||+++   ++++++.+...   ....++ +.+++++.++.++++..        ..++..
T Consensus       234 ~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~  312 (394)
T 2ay1_A          234 EVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVR  312 (394)
T ss_dssp             SEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            433   4889999 89 89999987   56543332210   011233 34778888777777643        123466


Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         145 ENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      ++++++++++.+.| +.++.  .+....+..|+++|+.++     .+.+.+.|.++||.+.++    +|++++ ..++++
T Consensus       313 ~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~gi~v~~~----~Ris~~-~~~~~~  381 (394)
T 2ay1_A          313 SGMLRLREQLAGEL-RDLSGSDRFGFVAEHRGMFSRLGAT-----PEQVKRIKEEFGIYMVGD----SRINIA-GLNDNT  381 (394)
T ss_dssp             HHHHHHHHHHHHHH-HHHHTSSTTTHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT----CEEEGG-GCCTTT
T ss_pred             HHHHHHHHHHHHHH-HhcCCCCCeeEEcCCceEEEeeCCC-----HHHHHHHHHhCCEEecCC----CeEEee-cCCHhh
Confidence            77788888888888 55531  122222344777776543     245677777899999875    699977 469999


Q ss_pred             HHHHHHHHHHH
Q psy6548         223 LREGLDIIINT  233 (242)
Q Consensus       223 i~~~~~~l~~~  233 (242)
                      +++++++|+++
T Consensus       382 i~~~~~~l~~~  392 (394)
T 2ay1_A          382 IPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.84  E-value=2.4e-20  Score=158.11  Aligned_cols=216  Identities=14%  Similarity=0.117  Sum_probs=148.0

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|..+. .+...   .+  .
T Consensus       131 ~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~-~~~~~---~~--~  200 (398)
T 2rfv_A          131 VRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSPY-CQQPL---QL--G  200 (398)
T ss_dssp             EEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCTT-TCCGG---GG--T
T ss_pred             EEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc-cCCch---hh--C
Confidence            45678888888 4444568999999999999997775    9999999999999999999997431 12211   12  3


Q ss_pred             CCEEE--eecccc-CCccch-heeEeChhhhh-ccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALS-GGLYPI-SAVLADDEVMG-TLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        83 ~~~~~--~sK~~~-~g~~~~-g~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      .|+++  ++|+++ +| .|+ |++++++++++ .+.+..... +.+.+++.+.++.++++.+.  ...+...++...+++
T Consensus       201 ~di~~~s~sK~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~  277 (398)
T 2rfv_A          201 ADIVVHSVTKYINGHG-DVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIAR  277 (398)
T ss_dssp             CSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCcccccCCC-CceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHH
Confidence            46544  789998 56 787 99999988776 555433333 45678888888777776432  234556667777777


Q ss_pred             HHHhhcC-------CCCCC-------e--EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------------
Q psy6548         157 ELRSRLS-------PDIVP-------V--VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------------  205 (242)
Q Consensus       157 ~l~~~l~-------~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------  205 (242)
                      .| +..+       .....       .  ..+.+.+++++++....+...+.+.+...|+.++++               
T Consensus       278 ~l-~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~  356 (398)
T 2rfv_A          278 FL-EGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHS  356 (398)
T ss_dssp             HH-HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSS
T ss_pred             HH-HcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccc
Confidence            77 4432       00000       0  013577888888752124555555555556665543               


Q ss_pred             ----------C--CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 ----------S--NNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 ----------~--~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                +  .+.+|++++...++++++++.+.|+++
T Consensus       357 ~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          357 PVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             SSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence                      1  579999999999999999988888653

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.84  E-value=4.6e-20  Score=153.73  Aligned_cols=206  Identities=8%  Similarity=0.029  Sum_probs=149.1

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh-CCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      |+++ +  .++++++|++++++|++|.+.+    +++|.++|++| |+++|+|++|+.. ..  .....  .  .|+++ 
T Consensus       121 d~~~l~--~~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~~~-~~--~~~~~--~--~d~~~~  187 (362)
T 3ffr_A          121 YPADIT--VPADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSSLP-YP--KFDWT--K--IDSVFF  187 (362)
T ss_dssp             CGGGCC--CCTTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTTTT-SS--CCCTT--S--CSEEEE
T ss_pred             CHHHHh--ccCCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecccccC-Cc--ccChh--H--CcEEEE
Confidence            4454 5  5678999999999999997776    99999999999 9999999998622 11  11111  1  56666 


Q ss_pred             -eeccccCCccchheeEeChhhhhccCCCCC--------------------CC-CCCCCHHHHHHHHHHHHHHHh---cc
Q psy6548          88 -LGKALSGGLYPISAVLADDEVMGTLVPGTH--------------------GS-TYGGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        88 -~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--------------------~~-~~~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                       ++|+++++ .++|+++.++++++.+.+...                    +. .++.+..++.++.++++.+..   ++
T Consensus       188 s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  266 (362)
T 3ffr_A          188 SVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADG  266 (362)
T ss_dssp             ETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHH
Confidence             55999955 567888888888766653211                    11 344566677777777776544   35


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEecc
Q psy6548         143 MIENAYKMGEIFRSELRSRLSP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPA  215 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~  215 (242)
                      +.++.+++++++++.| +.++. ....  .....+.++++.++.   +..++.+.|.++||.+.++    +++++|++++
T Consensus       267 ~~~~~~~~~~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~  342 (362)
T 3ffr_A          267 IRKQTEEKAALINTYI-ESSKVFSFGVEDAKLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGSKKETQIRIANF  342 (362)
T ss_dssp             HHHHHHHHHHHHHHHH-HHCSSEEESSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHH-HHccCceeccCChhhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccccCCCEEEEECC
Confidence            6778888899999999 66632 1111  112235677777765   5788999999999999864    5689999999


Q ss_pred             CcCCHHHHHHHHHHHHHHH
Q psy6548         216 LNITEQELREGLDIIINTI  234 (242)
Q Consensus       216 ~~~t~e~i~~~~~~l~~~l  234 (242)
                      ...++++++++++.|++++
T Consensus       343 ~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          343 PAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             TTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            8899999999999998764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.84  E-value=8e-20  Score=160.75  Aligned_cols=224  Identities=14%  Similarity=0.085  Sum_probs=138.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHH--HhhCCEEEEeccccccCccCcccccccC-CCCCCEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC--SQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIV   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~--~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~   86 (242)
                      |+++ +...+.++++|++++++|++|. +.+.+.+++|+++|  ++||++||+||+|.+|........ ... +....+.
T Consensus       234 d~~~l~~~~~~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~-~~~~~~~i~~~  311 (546)
T 2zy4_A          234 PDSELDKLKDPAIKIFFCVNPSNPPSV-KMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLF-AICPENTLLVY  311 (546)
T ss_dssp             CHHHHGGGGSTTEEEEEEESSCSSSCB-CCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHH-HHCGGGEEEEE
T ss_pred             CHHHHHHhhCCCCeEEEEECCCCCCCc-cCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHH-HhCCCCEEEEE
Confidence            4555 4444678999999999999995 55667899999999  889999999999988753222111 111 1111233


Q ss_pred             Eeecccc-CCccchheeEeChh-hhhccCCC------------------------------------CCCCCCCCCHHHH
Q psy6548          87 ILGKALS-GGLYPISAVLADDE-VMGTLVPG------------------------------------THGSTYGGNPLAC  128 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~-~~~~l~~~------------------------------------~~~~~~~~~~~~~  128 (242)
                      +|||.+| +| +|+||++++++ +++.+...                                    ....+.+.+.+.+
T Consensus       312 S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q  390 (546)
T 2zy4_A          312 SFSKYFGATG-WRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQ  390 (546)
T ss_dssp             ESTTTTTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHH
T ss_pred             eCccccCCCC-cceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHH
Confidence            4899998 89 99999998765 65554210                                    0112234555655


Q ss_pred             HHHH--HHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecC------Cc----------hhHH
Q psy6548         129 KLAM--TALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDK------SI----------LEVY  189 (242)
Q Consensus       129 ~~a~--a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~----------~~~~  189 (242)
                      .++.  +...++.+ +.+.+.+++..+.-++.+.+.++..+....+..++++|++++.      .+          .+.+
T Consensus       391 ~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~  470 (546)
T 2zy4_A          391 VQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD  470 (546)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGTSSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence            5421  11122322 2333333333332233332333322222234567888988753      00          1234


Q ss_pred             HHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         190 DVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       190 ~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+.+.+.++||.+.|+     +++++|+++. ..+++++++++++|++++.+..
T Consensus       471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          471 MLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             HHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence            4677788899999986     3578999965 3489999999999999988764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=163.16  Aligned_cols=213  Identities=12%  Similarity=0.062  Sum_probs=144.3

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--cccccc----CC----CCCCEE---E
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAIHY----ED----VRPDIV---I   87 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~----~~----~~~~~~---~   87 (242)
                      ++++|++++++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+.  ...+..    .+    -...++   +
T Consensus       235 ~~k~i~l~np~NPTG~-v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S  313 (498)
T 3ihj_A          235 DPKVLCIINPGNPTGQ-VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHS  313 (498)
T ss_dssp             EEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEec
Confidence            6889888899999995 55677899999999999999999999987543321  111111    01    111222   4


Q ss_pred             eeccc-c-CCccchheeE---eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHH
Q psy6548          88 LGKAL-S-GGLYPISAVL---ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD-----------VILE-ENMIENAYKM  150 (242)
Q Consensus        88 ~sK~~-~-~g~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~-----------~~~~-~~~~~~~~~~  150 (242)
                      +||++ | +| +|+||++   .++++++.+.... ....+.+.+++.++.++++           .++. +.+.+.++++
T Consensus       314 ~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~  391 (498)
T 3ihj_A          314 TSKGYMGECG-YRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKK  391 (498)
T ss_dssp             SSSSTTCCSS-SCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCcc-cceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHH
Confidence            89999 5 79 9999998   5788888776532 2334556777766555542           1221 3456778888


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc----------hhHHH--HHHHHHHCCceeccC-------CCCEEE
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI----------LEVYD--VCIKMKDAGLVTKPI-------SNNIIR  211 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~l~~~gi~~~~~-------~~~~lR  211 (242)
                      ++.+.+.| +.++. +....+..+++.|+.+..+.          .+.++  ..+.|.++||.+.|+       +.+++|
T Consensus       392 ~~~l~~~L-~~~~g-~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~R  469 (498)
T 3ihj_A          392 AKLTEDLF-NQVPG-IHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFR  469 (498)
T ss_dssp             HHHHHHHH-HTSTT-EECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEE
T ss_pred             HHHHHHHH-hcCCC-cEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEE
Confidence            89999999 66632 22223345677776654321          12333  345556789999874       345899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         212 LSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +++  ..+++++++++++|++.+++..++
T Consensus       470 is~--~~~~e~l~~~i~~L~~~~~~~~~~  496 (498)
T 3ihj_A          470 MTI--LPPVEKLKTVLQKVKDFHINFLEK  496 (498)
T ss_dssp             EEC--CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEe--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            995  579999999999999999887653

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.83  E-value=2.3e-19  Score=148.20  Aligned_cols=212  Identities=13%  Similarity=0.057  Sum_probs=146.0

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|+.|+++ +...++++++|++++++|++|.+.+    +++|.++|++ ||+++|+||+|+.. ....+  . .+  
T Consensus        65 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~~--~-~~--  134 (331)
T 1pff_A           65 VDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTNP--L-DL--  134 (331)
T ss_dssp             EEEECTTSTTHHHHTCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCCG--G-GG--
T ss_pred             EEEeCCCCHHHHHHhhcCCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCCh--h-hc--
Confidence            44567778888 5555578999999999999998775    9999999999 99999999999632 11111  1 12  


Q ss_pred             CCCEEE--eecccc-CCccc-hheeEeCh-hhhhccCCCCCC-CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALS-GGLYP-ISAVLADD-EVMGTLVPGTHG-STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        82 ~~~~~~--~sK~~~-~g~~~-~g~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      ..|+++  ++|+++ +| .| +|++++++ ++++.+.+.... .+.+.+++.+.++.++++.+..  ..+...++...+.
T Consensus       135 ~~d~~~~s~~K~~~~~~-~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~  211 (331)
T 1pff_A          135 GVDIVVHSATKYINGHT-DVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQKVA  211 (331)
T ss_dssp             TCSEEEEETTTTTSSSS-SCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             CCcEEEEECccccCCCC-CceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHH
Confidence            346555  789999 45 67 78999998 888888776555 5556777777666666664422  2233444555555


Q ss_pred             HHHHhhcC-------CCCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------------
Q psy6548         156 SELRSRLS-------PDIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------------  205 (242)
Q Consensus       156 ~~l~~~l~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------------  205 (242)
                      +.+ +...       .....         ..++.+.++.+.+..    .+++.+.|.++||.+...              
T Consensus       212 ~~l-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~  286 (331)
T 1pff_A          212 EFL-HEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----LEKAKKVLDNCHVVSLAVSLGGPESLIQHPAS  286 (331)
T ss_dssp             HHH-HHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----HHHHHHHHHTCSSSEECSSCCSSSCEEECHHH
T ss_pred             HHH-HcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----HHHHHHHHHhCCCceeccCCCCcceeeecchh
Confidence            555 3221       00000         012346678887752    467788888999966322              


Q ss_pred             ----------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 ----------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 ----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                      ..+.+|++++..+++++++++++.|+++
T Consensus       287 ~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          287 MTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             hcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                            1579999999999999999999988753

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.83  E-value=1.4e-20  Score=160.65  Aligned_cols=211  Identities=12%  Similarity=0.101  Sum_probs=140.1

Q ss_pred             Chhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccccccC-CCCC
Q psy6548          11 QVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAIHYE-DVRP   83 (242)
Q Consensus        11 d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~-~~~~   83 (242)
                      |++.  +.+.  +++++++++++++|++|. .++.+.+++|+++|++||+++|+||+|.++...+.  ......+ +...
T Consensus       181 d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  259 (420)
T 4f4e_A          181 NFDGMLAALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANL  259 (420)
T ss_dssp             CHHHHHHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCC
Confidence            5665  3444  267899999999999995 55778899999999999999999999988765431  1111111 1222


Q ss_pred             CE---EEeecccc-CCccchheeEe---Chhhhhcc----CCCCCCCCCCCCHHHHHHHHHHHHHH------H--hccHH
Q psy6548          84 DI---VILGKALS-GGLYPISAVLA---DDEVMGTL----VPGTHGSTYGGNPLACKLAMTALDVI------L--EENMI  144 (242)
Q Consensus        84 ~~---~~~sK~~~-~g~~~~g~~~~---~~~~~~~l----~~~~~~~~~~~~~~~~~~a~a~l~~~------~--~~~~~  144 (242)
                      ++   .++||.++ +| +|+||+++   ++++++.+    .......+.+.+++++.++.++++..      .  -+++.
T Consensus       260 ~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  338 (420)
T 4f4e_A          260 NVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR  338 (420)
T ss_dssp             CEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            32   33889999 79 99999863   45544432    21111223344566666655555431      1  13466


Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         145 ENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      ++++++++.+.+.| +.+..  .+....+..|++.|+.++     .+.+.+.+.++||.+.+.+    |+++.. .++++
T Consensus       339 ~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~gI~v~~~~----Ris~~~-~~~~~  407 (420)
T 4f4e_A          339 DRIRAMRNGLVERL-KAAGIERDFSFINAQRGMFSYSGLT-----SAQVDRLREEFGIYAVSTG----RICVAA-LNTRN  407 (420)
T ss_dssp             HHHHHHHHHHHHHH-HHTTCSSCCTHHHHSCSSEEECCCC-----HHHHHHHHHHHCEECCTTS----EEEGGG-CCTTT
T ss_pred             HHHHHHHHHHHHHH-HhcCCCCCceeECCCccEEEEeCCC-----HHHHHHHHHhCCEEecCCC----eEEEec-CCHHH
Confidence            78888889999999 55531  233333456677776543     3456777778999999863    898653 37788


Q ss_pred             HHHHHHHHHHHH
Q psy6548         223 LREGLDIIINTI  234 (242)
Q Consensus       223 i~~~~~~l~~~l  234 (242)
                      +++++++|++++
T Consensus       408 i~~~~~~l~~~l  419 (420)
T 4f4e_A          408 LDVVANAIAAVL  419 (420)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.83  E-value=1.8e-20  Score=158.43  Aligned_cols=210  Identities=13%  Similarity=0.106  Sum_probs=138.1

Q ss_pred             Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC--cccccccC-CCCC
Q psy6548          11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG--KLLAIHYE-DVRP   83 (242)
Q Consensus        11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~-~~~~   83 (242)
                      |+++  +.+.+  ++++++++++++|++|. ..+.+.+++|+++|++||+++|+||+|.++...+  .......+ +...
T Consensus       159 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
T 3fsl_A          159 RFNDLLATLKTLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGL  237 (397)
T ss_dssp             CHHHHHHHHTTCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTC
T ss_pred             cHHHHHHHHHhCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCC
Confidence            5666  44442  67899999999999995 5567789999999999999999999998875442  11111111 1222


Q ss_pred             C---EEEeecccc-CCccchheeEe---ChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHH------H--hccHH
Q psy6548          84 D---IVILGKALS-GGLYPISAVLA---DDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVI------L--EENMI  144 (242)
Q Consensus        84 ~---~~~~sK~~~-~g~~~~g~~~~---~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~------~--~~~~~  144 (242)
                      +   +.++||.++ +| +|+||+++   +++.++.+...    ....+...+.+++.++.++++..      .  .++..
T Consensus       238 ~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  316 (397)
T 3fsl_A          238 PALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMR  316 (397)
T ss_dssp             CEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            2   334889999 89 99999874   44555433211    01222334556666555444421      1  13467


Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548         145 ENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE  222 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~  222 (242)
                      ++++++++.+++.| +++..  ++....+..+++.|+.++     .+.+.+.|.++||.+.+++    |+++.. .++++
T Consensus       317 ~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~----Ris~~~-~~~~~  385 (397)
T 3fsl_A          317 TRILAMRQELVKVL-STEMPERNFDYLLNQRGMFSYTGLS-----AAQVDRLREEFGVYLIASG----RMCVAG-LNTAN  385 (397)
T ss_dssp             HHHHHHHHHHHHHH-HHHCTTSCCTHHHHCCSSEEECCCC-----HHHHHHHHHTTCEECCTTC----EEEGGG-CCTTT
T ss_pred             HHHHHHHHHHHHHH-HhcCCCCCceeecCCceEEEecCCC-----HHHHHHHHHhCCEEECCCC----eEEEEe-cCHhh
Confidence            78888899999999 55532  222223345677776543     3456777788999999875    888643 37788


Q ss_pred             HHHHHHHHHHH
Q psy6548         223 LREGLDIIINT  233 (242)
Q Consensus       223 i~~~~~~l~~~  233 (242)
                      +++++++|+++
T Consensus       386 i~~~~~~l~~~  396 (397)
T 3fsl_A          386 VQRVAKAFAAV  396 (397)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.83  E-value=3.7e-20  Score=156.80  Aligned_cols=215  Identities=13%  Similarity=0.087  Sum_probs=146.1

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~   87 (242)
                      |+++  +.+.++++++|++++.++  |...    .+++|+++|++||+++|+||+|+ ++..+....  ..++ .+|+++
T Consensus       151 d~~~l~~~i~~~~~~~v~~~~~~~--~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di~~  221 (405)
T 2vi8_A          151 DYDDVREKARLHRPKLIVAAAAAY--PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHFVT  221 (405)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCSSC--CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSEEE
T ss_pred             CHHHHHHHHHhcCCeEEEEeCCCC--CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCEEE
Confidence            5555  333333678888855332  3222    28999999999999999999997 322221111  1111 467664


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCCCCCCCCC-CHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhh
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG-NPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~  161 (242)
                        ++|+++|+ .+ |++++++++++.+.+....+.+++ ++..++++.++++.+..   +++.++++++++++++.| +.
T Consensus       222 ~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L-~~  298 (405)
T 2vi8_A          222 TTTHKTLRGP-RG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL-QN  298 (405)
T ss_dssp             EESSSTTCCC-SC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             EeccccCCCC-CC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hh
Confidence              88999966 55 999999888877654322333333 55566665677776543   457788889999999999 66


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccC----cCCHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NITEQELREGL  227 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~----~~t~e~i~~~~  227 (242)
                      ++-.. ..+.+.++++++.++..+.+..++.+.|.++||.+.++          .++.+|++++.    .++++++++++
T Consensus       299 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~  377 (405)
T 2vi8_A          299 EGFTL-VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIA  377 (405)
T ss_dssp             TTCEE-GGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred             CCCeE-ecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHH
Confidence            53111 11123578889988752235778999999999999863          24689999876    56899999999


Q ss_pred             HHHHHHHHHHh
Q psy6548         228 DIIINTINTMA  238 (242)
Q Consensus       228 ~~l~~~l~~~~  238 (242)
                      ++|+++++++.
T Consensus       378 ~~l~~~~~~~~  388 (405)
T 2vi8_A          378 AIIGLVLKNVG  388 (405)
T ss_dssp             HHHHHHHTCTT
T ss_pred             HHHHHHHhccc
Confidence            99999887653

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=6e-20  Score=155.60  Aligned_cols=214  Identities=14%  Similarity=0.063  Sum_probs=146.8

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+.++++++|+++.+++  |...+    +++|+++|++||+++|+||+|++ +...+....  ..+ .+|++
T Consensus       150 ~d~~~l~~~l~~~~~~~v~~~~p~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~  220 (407)
T 2dkj_A          150 IDLEEVRRLALEHRPKVIVAGASAY--PRFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVV  220 (407)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEE
T ss_pred             cCHHHHHHHHhhcCCeEEEEecccc--CCCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEE
Confidence            35555  334334678888843333  22332    89999999999999999999975 433332111  111 25776


Q ss_pred             --EeeccccCCccchheeEeC-hhhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Q psy6548          87 --ILGKALSGGLYPISAVLAD-DEVMGTLVPGT-HGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 --~~sK~~~~g~~~~g~~~~~-~~~~~~l~~~~-~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~  159 (242)
                        +++|+++|  .++|+++++ +++++.+.+.. .+.+.+.++..++++.++++....   +++.++++++++++++.| 
T Consensus       221 ~~s~sK~l~g--~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L-  297 (407)
T 2dkj_A          221 TSTTHKTLRG--PRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEEL-  297 (407)
T ss_dssp             EEESSGGGCC--CSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EEeccccCCC--CCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence              48898875  467999999 78887765432 223334456556566677776533   457788889999999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccCc----CCHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPALN----ITEQELRE  225 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~~----~t~e~i~~  225 (242)
                      +.++-... ..+..++++++.++..+.+..++.+.|.++||.+.++          .++.+|++++..    .+++++++
T Consensus       298 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~  376 (407)
T 2dkj_A          298 ARRGYRIV-TGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPL  376 (407)
T ss_dssp             HHTTCEEG-GGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHH
T ss_pred             HhCCceee-cCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHH
Confidence            66532111 1134678889988752235778999999999999864          256899997653    79999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      ++++|++++++
T Consensus       377 ~~~~l~~~~~~  387 (407)
T 2dkj_A          377 VAELIDRALLE  387 (407)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999877

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.83  E-value=4.6e-20  Score=155.71  Aligned_cols=214  Identities=17%  Similarity=0.147  Sum_probs=146.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+++... ...     ...
T Consensus       119 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~-----~~~  188 (386)
T 1cs1_A          119 VLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL-----ALG  188 (386)
T ss_dssp             EEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG-----GGT
T ss_pred             EEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc-----ccC
Confidence            45677888888 4433457899999999999998775    999999999999999999999865322 111     123


Q ss_pred             CCEE--EeeccccCCccch-heeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIV--ILGKALSGGLYPI-SAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~--~~sK~~~~g~~~~-g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +|++  +++|+++++..++ |++++++ ++++.+.+....++.+.+++++.++.++++.+.  ...+...++...+.+.|
T Consensus       189 ~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l  266 (386)
T 1cs1_A          189 ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYL  266 (386)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHH
Confidence            5655  4889998431565 8998875 787777654344445567777776666655432  23455667777777777


Q ss_pred             HhhcCC------CCCC----------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---C--------------
Q psy6548         159 RSRLSP------DIVP----------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---I--------------  205 (242)
Q Consensus       159 ~~~l~~------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~--------------  205 (242)
                       +.++.      ....          ...+.+.++.+.+...   .+.+.+.|.++||.++.   +              
T Consensus       267 -~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~  342 (386)
T 1cs1_A          267 -QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH  342 (386)
T ss_dssp             -TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT
T ss_pred             -hcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---HHHHHHHHHhCCcceEcccCCCcceeeeccccccc
Confidence             55431      0000          0123477888887653   56778888889998863   1              


Q ss_pred             -------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 -------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 -------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                   ..+.+|++++...++++++.+.+.|+++
T Consensus       343 ~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          343 AGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             TTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                         1479999998877777777777666553

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.83  E-value=2.3e-19  Score=151.67  Aligned_cols=209  Identities=11%  Similarity=0.037  Sum_probs=127.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL-   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~-   88 (242)
                      |+++ +...++++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++...  ....  .. +|++++ 
T Consensus       148 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~--~~~~--~~-~d~~~~s  217 (400)
T 3vax_A          148 SVEGVMERLRPDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP--GDLT--TP-IDMISIS  217 (400)
T ss_dssp             CHHHHHTTCCTTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG--GGGG--SC-CSEEEEE
T ss_pred             CHHHHHHhcCCCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC--cChh--hc-CcEEEEe
Confidence            6777 5555668999999999999997776    8999999999999999999996 22111  1112  23 677774 


Q ss_pred             -eccccCCccchheeE-eChh-hh---hccCCCCC-------CCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Q psy6548          89 -GKALSGGLYPISAVL-ADDE-VM---GTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEI  153 (242)
Q Consensus        89 -sK~~~~g~~~~g~~~-~~~~-~~---~~l~~~~~-------~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~  153 (242)
                       +|.++ + .++|+++ ++++ +.   ..+.+...       ....+.++.++.++.++++.+..  +++.++.++++++
T Consensus       218 ~~K~~g-~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  295 (400)
T 3vax_A          218 GHKIGA-P-KGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSR  295 (400)
T ss_dssp             TGGGTS-C-SSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHhCC-C-CceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             49554 3 4578877 7652 21   22333221       11234566777776777776654  4577888888889


Q ss_pred             HHHHHHhhcCCCCCCeEe--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CC
Q psy6548         154 FRSELRSRLSPDIVPVVR--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NN  208 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~  208 (242)
                      +++.| + ..........  ..+.++++.++.  .+.+++.+.|. +||.++++.                       .+
T Consensus       296 l~~~L-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (400)
T 3vax_A          296 LLAGL-A-STSFQVNGDQDHVVPHILNLSFED--VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASK  370 (400)
T ss_dssp             HHHHH-T-TTTCEECSCTTSBCTTEEEEECTT--CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTS
T ss_pred             HHHhh-C-CCCEEEeCCcccCCCCEEEEEeCC--CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCc
Confidence            98888 5 3321111111  124567777765  46788999999 999987742                       48


Q ss_pred             EEEEec-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         209 IIRLSP-ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       209 ~lR~~~-~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ++|+++ +...+++++++++++|++++++
T Consensus       371 ~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          371 SLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEEEEEC--------------------
T ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999 8888999999999999988754

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.83  E-value=5.9e-21  Score=162.38  Aligned_cols=203  Identities=13%  Similarity=0.056  Sum_probs=138.6

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC---ccccc-ccCCCCC---C-E--EEeec
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG---KLLAI-HYEDVRP---D-I--VILGK   90 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~-~~~~~~~---~-~--~~~sK   90 (242)
                      .++++++..++|++|. +.+.+.+++|+++|++||+++|+||+|.+|+..+   ..... ......+   + +  .++||
T Consensus       176 ~~~~~~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  254 (412)
T 1yaa_A          176 GSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK  254 (412)
T ss_dssp             TCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred             CCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCC
Confidence            3566666889999994 6667889999999999999999999998875443   11111 1111122   2 2  23889


Q ss_pred             cccC-CccchheeE--e-----Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHH
Q psy6548          91 ALSG-GLYPISAVL--A-----DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--------EENMIENAYKM  150 (242)
Q Consensus        91 ~~~~-g~~~~g~~~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~  150 (242)
                      .++. | +|+||++  +     +++    +++.+.........+.+++++.++.++++...        .++..++++++
T Consensus       255 ~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (412)
T 1yaa_A          255 NAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKM  333 (412)
T ss_dssp             TSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9995 9 9999998  7     555    66666542223333457888888777776542        23466778888


Q ss_pred             HHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHH
Q psy6548         151 GEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       151 ~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      ++++++.| +.++.  .+....+..+++.|+.+     +...+.+.+.++||.+.+    .+|++++. .++++++++++
T Consensus       334 ~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~  402 (412)
T 1yaa_A          334 RHALRDHL-VKLGTPGNWDHIVNQCGMFSFTGL-----TPQMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAK  402 (412)
T ss_dssp             HHHHHHHH-HHHTCSSCCTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHH
T ss_pred             HHHHHHHH-HhhCCCCCeeeeccCceEEEeeCC-----CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHH
Confidence            88999999 66542  12222234456666533     234555555578999987    47999764 48999999999


Q ss_pred             HHHHHHHH
Q psy6548         229 IIINTINT  236 (242)
Q Consensus       229 ~l~~~l~~  236 (242)
                      +|+++++.
T Consensus       403 ~l~~~~~~  410 (412)
T 1yaa_A          403 AIDEVVRF  410 (412)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998865

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.82  E-value=9.9e-21  Score=160.90  Aligned_cols=210  Identities=12%  Similarity=0.087  Sum_probs=139.3

Q ss_pred             Chhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---cccccc-CCCC
Q psy6548          11 QVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHY-EDVR   82 (242)
Q Consensus        11 d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~-~~~~   82 (242)
                      |+++  +.+.  ++.+++++++.++|++| .+++.+.+++|+++|++||+++|+||+|.+++..+.   ...... .+..
T Consensus       169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  247 (409)
T 4eu1_A          169 NLAGMLECLDKAPEGSVILVHACAHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMV  247 (409)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTS
T ss_pred             cHHHHHHHHHhCCCCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhC
Confidence            4555  3343  34677788788899999 455678899999999999999999999988765441   111111 1333


Q ss_pred             CCEE---Eeecccc-CCccchhee---EeChh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHH------H--hccH
Q psy6548          83 PDIV---ILGKALS-GGLYPISAV---LADDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI------L--EENM  143 (242)
Q Consensus        83 ~~~~---~~sK~~~-~g~~~~g~~---~~~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~------~--~~~~  143 (242)
                      ++++   ++||.++ +| +|+||+   .++++    +++.+.......+++.+++++.++.++++..      .  .++.
T Consensus       248 ~~~i~~~S~SK~~g~~G-~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  326 (409)
T 4eu1_A          248 PNLIVAQSFSKNFGLYG-HRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQM  326 (409)
T ss_dssp             SCCEEEEECTTTSSCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCcccccCcc-CCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4443   4899999 89 999995   56666    5555543222344456678887777777632      1  2346


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCH
Q psy6548         144 IENAYKMGEIFRSELRSRLSP-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      .++++++++++++.| +.++. . +....+..+++.|+.++      .++...++ ++||.+.|++    |+++.. .++
T Consensus       327 ~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~ll~~~gv~v~p~~----Ri~~~~-~~~  394 (409)
T 4eu1_A          327 SSRIAEVRKRLVSEL-KACGSVHDWSHIERQVGMMAYTGLT------REQVELLRSEYHIYMTLNG----RAAVSG-LNS  394 (409)
T ss_dssp             HHHHHHHHHHHHHHH-HHTTCCSCCHHHHHSCSSEEECCCC------HHHHHHHHHHHCEECCTTC----EEEGGG-CCT
T ss_pred             HHHHHHHHHHHHHHH-HhcCCCCCcceecCCceEEEEeCCC------HHHHHHHHHcCCEEEcCCC----EEEEEe-cCH
Confidence            678888889999999 66541 1 22222345566664332      23455555 6799999863    777654 467


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTI  234 (242)
Q Consensus       221 e~i~~~~~~l~~~l  234 (242)
                      +++++++++|++++
T Consensus       395 ~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          395 TNVEYVSQAIHNVT  408 (409)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHh
Confidence            78999999998765

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.82  E-value=2.3e-19  Score=150.82  Aligned_cols=211  Identities=19%  Similarity=0.174  Sum_probs=145.7

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      |+++  +.+.++++++|++++++|++|.+.+    +++|+++|++|  |+++|+||+|+ ++..  ......  ..+|++
T Consensus       125 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~  195 (385)
T 2bkw_A          125 PLELITEKLSQNSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDE--WGVDFA  195 (385)
T ss_dssp             CHHHHHHHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTT--TTCSEE
T ss_pred             CHHHHHHHHhcCCCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--cccccc--cCceEE
Confidence            5555  3333447889999999999998776    88999999999  99999999996 2221  112222  245766


Q ss_pred             E--eeccccCCccchheeEeChhhhh-ccCC----------------------CCC--CC-CCCCCHHHHHHHHHHHHHH
Q psy6548          87 I--LGKALSGGLYPISAVLADDEVMG-TLVP----------------------GTH--GS-TYGGNPLACKLAMTALDVI  138 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~~~~~-~l~~----------------------~~~--~~-~~~~~~~~~~~a~a~l~~~  138 (242)
                      +  ++|+++|+ .++|+++++++.++ .+.+                      ...  +. .++.+..++.++.++++.+
T Consensus       196 ~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~  274 (385)
T 2bkw_A          196 LTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI  274 (385)
T ss_dssp             EEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             EecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence            6  56999865 56799999988766 5421                      000  01 1346677777777788776


Q ss_pred             Hh---ccHHHHHHHHHHHHHHHH-HhhcCCCCCC-eE-e-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----
Q psy6548         139 LE---ENMIENAYKMGEIFRSEL-RSRLSPDIVP-VV-R-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----  206 (242)
Q Consensus       139 ~~---~~~~~~~~~~~~~l~~~l-~~~l~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----  206 (242)
                      ..   +++.++.+++++++++.| ++ ++-.... .. . ..+.++++.++.    ..++.+.|.++||.+.++.     
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~~~~~~  349 (385)
T 2bkw_A          275 LEEGLHKRWDLHREMSDWFKDSLVNG-LQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHKDIG  349 (385)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTT-TCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCTTTG
T ss_pred             HHccHHHHHHHHHHHHHHHHHHHHHh-cCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCCCCcccC
Confidence            54   235677778888888888 43 3211111 10 1 246788888754    5788999999999998752     


Q ss_pred             CCEEEEe-cc---CcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 NNIIRLS-PA---LNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 ~~~lR~~-~~---~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .+++|++ +.   +.++++++++++++|++++++
T Consensus       350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            5789999 44   256999999999999988754

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.82  E-value=4.4e-19  Score=150.73  Aligned_cols=216  Identities=14%  Similarity=0.108  Sum_probs=147.4

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++ ||+++|+||+|.++... .+.  . +  
T Consensus       129 ~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~~-~~~--~-~--  198 (404)
T 1e5e_A          129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMIT-NPV--D-F--  198 (404)
T ss_dssp             EEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTTC-CGG--G-G--
T ss_pred             EEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhhC-Ccc--c-c--
Confidence            55678888888 5444568999999999999997775    9999999999 99999999999865321 121  1 2  


Q ss_pred             CCCEEE--eecccc-CCccch-heeEeChhhhh-ccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALS-GGLYPI-SAVLADDEVMG-TLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        82 ~~~~~~--~sK~~~-~g~~~~-g~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      ..|+++  +||+++ +| .|+ ||+++++++++ .+.+..... ....+++.+.++.++++.+.  ...++..++...+.
T Consensus       199 ~~di~~~S~sK~~~~~g-~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~  275 (404)
T 1e5e_A          199 GVDVVVHSATKYINGHT-DVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRMKAESENAMKVA  275 (404)
T ss_dssp             TCSEEEEETTTTTTCSS-CCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCccccCCCC-CCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHH
Confidence            346654  789999 57 887 99999998877 776654443 44567888777777776432  23444566666666


Q ss_pred             HHHHhhcC-------CCCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---------------
Q psy6548         156 SELRSRLS-------PDIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---------------  204 (242)
Q Consensus       156 ~~l~~~l~-------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---------------  204 (242)
                      +.+ +..+       ......         ..+.|.++.++++..   .+...+.+.+.||++..               
T Consensus       276 ~~l-~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~  351 (404)
T 1e5e_A          276 EYL-KSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG---FEGAKKLLDNLKLITLAVSLGGCESLIQHPAS  351 (404)
T ss_dssp             HHH-HTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHTCSSSEESSCCCSSSCEEECGGG
T ss_pred             HHH-HhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC---HHHHHHHHHhCCCceeccCCCCcceeeecccc
Confidence            777 4332       011000         112366777777542   34455566677874322               


Q ss_pred             -------------CC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         205 -------------IS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       205 -------------~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                                   .+  ++++|+++..    |+++++++.|+++++.+.+.
T Consensus       352 ~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~~  398 (404)
T 1e5e_A          352 MTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALLRS  398 (404)
T ss_dssp             TTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHCC
T ss_pred             cccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHHh
Confidence                         11  5799999554    78999999999999876654

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.82  E-value=1.2e-19  Score=150.86  Aligned_cols=199  Identities=11%  Similarity=0.061  Sum_probs=129.8

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC--ccCcccccccCC--CCCCEEE--eeccccC
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG--RTGKLLAIHYED--VRPDIVI--LGKALSG   94 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~--~~g~~~~~~~~~--~~~~~~~--~sK~~~~   94 (242)
                      ++++|++++++ ++| .+++.+++++|+++|++||+++|+||+|..+.  ..+..  ....+  ...|+++  ++|+ + 
T Consensus       141 ~~~~v~~~~~~-~tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~-g-  214 (356)
T 1v72_A          141 QPACVSITQAT-EVG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN-G-  214 (356)
T ss_dssp             EEEEEEEESSC-TTS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG-T-
T ss_pred             CceEEEEEcCC-CCC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC-C-
Confidence            78999999976 477 56678999999999999999999999996431  11211  11111  1345555  6798 4 


Q ss_pred             Cccchh--eeEeChhhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          95 GLYPIS--AVLADDEVMGTLVPGT-HGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        95 g~~~~g--~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                        .|.|  ++++++++++.+.... ..++....  +..++.++++.++++   ++.++.+++++++++.| +.+.. +..
T Consensus       215 --~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~g-~~~  288 (356)
T 1v72_A          215 --VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGL-EGLGG-VEV  288 (356)
T ss_dssp             --CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-TTCTT-EEE
T ss_pred             --CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhCCC-cEE
Confidence              3455  7878888877654321 11221111  122223334444332   24566777888888888 55431 111


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ..+..++++|+.++      .++.+.|.++||.+.++.  ++++|++++..++++++++++++|++++++.
T Consensus       289 ~~~~~~~~~~~~~~------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          289 LGGTEANILFCRLD------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             ESCCCSSEEEEEEC------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             ccCCCccEEEEEcC------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            12345667777764      268889999999998653  6899999999999999999999999887654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.82  E-value=8.5e-20  Score=152.24  Aligned_cols=215  Identities=13%  Similarity=0.032  Sum_probs=141.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCCCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~~~~-   86 (242)
                      |+++ +...  +++++++++++|++|+.+++.+++++|+++|++||+++|+||+|..  .+..+....  .+....|++ 
T Consensus       126 d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~  201 (357)
T 3lws_A          126 TLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA--EIAGLFDSIY  201 (357)
T ss_dssp             CHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH--HHHTTSSEEE
T ss_pred             CHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH--HHHhcCCEEE
Confidence            4555 3332  3889999999998855788889999999999999999999999851  111221111  001123444 


Q ss_pred             -EeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          87 -ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        87 -~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                       ++||+++++ .+ |++++++++++.+....  .+.+.......++++.++++... +. .++.+++++++.+.| ++++
T Consensus       202 ~s~sK~~~~~-~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L-~~~~  276 (357)
T 3lws_A          202 ISFYKGLGGI-AG-AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK-DR-MGQYYEQAKQLAEQF-NALP  276 (357)
T ss_dssp             EESSSTTCCS-SC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHH-HTST
T ss_pred             EeccccCCCC-ce-EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHH-HhCC
Confidence             589999654 33 88999998888775321  22222223333444455665422 22 344677788899999 6653


Q ss_pred             CCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC-----CCCEEEEecc---CcCCHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPA---LNITEQELREGLDIIINTI  234 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~---~~~t~e~i~~~~~~l~~~l  234 (242)
                      .......+..++++|+.++... .+..++.+.|.++||.+.++     +..++|++..   ...+.+++++++++|.+++
T Consensus       277 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          277 GVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             TEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             CCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            2111012345778899887642 23678899999999999876     2348999865   3468899999999998764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.82  E-value=9e-19  Score=146.99  Aligned_cols=212  Identities=12%  Similarity=0.121  Sum_probs=146.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--   87 (242)
                      |+++ +...+.++++|++++++|++|.+.+    +++|.++|++||++ |+||+|+ ++...  .....+  .+|+++  
T Consensus       127 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s  196 (382)
T 4eb5_A          127 DVSFIDQKLRDDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTIS  196 (382)
T ss_dssp             CHHHHHHHCCTTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEE
T ss_pred             CHHHHHHHhcCCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEee
Confidence            5666 4333457999999999999998776    89999999999999 9999996 33221  111112  356666  


Q ss_pred             eeccccCCccchheeEeChhhhhccCCCCC-------CCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          88 LGKALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      ++|.++.  .++|+++++++.  .+.+...       ....+.+...+.++.++++.+.+  +++.++.+++++++.+.|
T Consensus       197 ~sK~~g~--~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  272 (382)
T 4eb5_A          197 SNDIYGP--KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNV  272 (382)
T ss_dssp             TGGGTCC--SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcCC--CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5698662  247888887663  2332211       11234456666666677776544  346677888888888888


Q ss_pred             HhhcCCCCCCeEe--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         159 RSRLSPDIVPVVR--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                       +.++........  ..+.++++.++.  .+..++.+.|.++||.+.++.                       .+.+|++
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (382)
T 4eb5_A          273 -LKIEESYLNGHPEKRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT  349 (382)
T ss_dssp             -TTSTTEEECSCSSSBCTTEEEEEETT--SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred             -hhCCCeEEeCCcccCCCCEEEEEeCC--cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence             655321011111  125567777764  467889999999999998752                       4789999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++..++++++++++++|+++++++..
T Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          350 LGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999988764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.81  E-value=4.5e-19  Score=154.42  Aligned_cols=217  Identities=9%  Similarity=0.046  Sum_probs=146.4

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-----Cc----ccccccCCC
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-----GK----LLAIHYEDV   81 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-----g~----~~~~~~~~~   81 (242)
                      +++ +...+.++++|+++++++++|.+.+    +++|+++|++||+++|+||+|.++...     +.    .+.....+ 
T Consensus       196 ~~~l~~~i~~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g-  270 (497)
T 3mc6_A          196 LGKVKKFINKNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG-  270 (497)
T ss_dssp             TTTTGGGCCSSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT-
T ss_pred             HHHHHHHHhhCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC-
Confidence            555 4444568999999999999997765    789999999999999999999764221     11    12222223 


Q ss_pred             CCCEEE--eeccccCCccchheeEeChhhhhccCCC----CCCCC-----C--CCCHHHHHHHHHHHHHHHh---ccHHH
Q psy6548          82 RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG----THGST-----Y--GGNPLACKLAMTALDVILE---ENMIE  145 (242)
Q Consensus        82 ~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~----~~~~~-----~--~~~~~~~~~a~a~l~~~~~---~~~~~  145 (242)
                       .|+++  ++|++.+| .++|+++.+++.+......    ..+..     +  +.+....++.+++++.+..   +++.+
T Consensus       271 -~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~  348 (497)
T 3mc6_A          271 -VTSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQ  348 (497)
T ss_dssp             -CCEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CcEEEECchhhcCCC-CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHH
Confidence             46666  44988888 8899998876655443211    11111     1  1112234445556665544   34567


Q ss_pred             HHHHHHHHHHHHHHhh-cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHH
Q psy6548         146 NAYKMGEIFRSELRSR-LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQEL  223 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i  223 (242)
                      +..++++++++.| ++ ++. +....+..+.++.+....  .+..++.+.|.++||.+.... +..+|++++ ..+++++
T Consensus       349 ~~~~~~~~l~~~L-~~~~~g-~~~~~~~~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i  423 (497)
T 3mc6_A          349 EIVGAAMKFKKYI-QENIPD-LDIMGNPRYSVISFSSKT--LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVV  423 (497)
T ss_dssp             HHHHHHHHHHHHH-HHSCTT-CEECSCCCSSEEEEECTT--TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTH
T ss_pred             HHHHHHHHHHHHH-HhcCCC-EEEecCCCeeEEEEeCCC--CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHH
Confidence            7888999999999 66 442 111112345566666543  468899999999999987653 457899988 6799999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy6548         224 REGLDIIINTINTMAAK  240 (242)
Q Consensus       224 ~~~~~~l~~~l~~~~~~  240 (242)
                      +++++.|+++++++.++
T Consensus       424 ~~~~~~L~~~l~~~~~~  440 (497)
T 3mc6_A          424 DEICDILRTTVQELKSE  440 (497)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999887543

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.81  E-value=3.2e-20  Score=159.75  Aligned_cols=205  Identities=10%  Similarity=0.086  Sum_probs=136.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---ccccccC-CCCCC---EEEeeccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHYE-DVRPD---IVILGKAL   92 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~~---~~~~sK~~   92 (242)
                      .++++++++.++|++|. .++.+.+++|+++|++||+++|+||+|.+|+..+.   ......+ +..++   +.++||.+
T Consensus       201 ~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  279 (448)
T 3meb_A          201 EKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF  279 (448)
T ss_dssp             TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS
T ss_pred             CCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC
Confidence            46888888999999995 56778899999999999999999999988765441   1111111 12334   33389999


Q ss_pred             c-CCccchhee--Ee--------C-h----hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHH
Q psy6548          93 S-GGLYPISAV--LA--------D-D----EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--------EENMIENAY  148 (242)
Q Consensus        93 ~-~g~~~~g~~--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--------~~~~~~~~~  148 (242)
                      + .| +|+||+  ++        + +    ++++.+.......+.+.+.+++.++.++++...        -++..++++
T Consensus       280 g~~G-~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~  358 (448)
T 3meb_A          280 GLYG-ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIH  358 (448)
T ss_dssp             CCGG-GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcc-ccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            9 78 999997  55        3 4    555555432233344556677766666654321        134567788


Q ss_pred             HHHHHHHHHHHhhcC-CC------CCCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccCCCCEEEEeccCcCCH
Q psy6548         149 KMGEIFRSELRSRLS-PD------IVPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITE  220 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lR~~~~~~~t~  220 (242)
                      ++++.+++.| +.++ ..      .....+..+++.|+.++      .++...| .++||.+.|+. +  |+++.. .++
T Consensus       359 ~~r~~l~~~L-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~ll~~~gV~v~~G~-g--Ris~a~-~~~  427 (448)
T 3meb_A          359 RMRSLLHASL-AKRKTPGPGSKGTWDHILTAIGMFTFTGLT------PEHVDYLKEKWSIYLVKAG-G--RMSMCG-LTE  427 (448)
T ss_dssp             HHHHHHHHHH-HHTTCCCSTTTCCCTHHHHCCSSEEECCCC------HHHHHHHHHHHCEEECSGG-G--EEEGGG-CCT
T ss_pred             HHHHHHHHHH-HhhCCCCcCcccccceeCCCceEEEecCCC------HHHHHHHHHhCCEEEeCCC-c--EEEEec-CCH
Confidence            8888999999 6653 11      22223345666665442      2445555 56799999863 2  888643 377


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINTM  237 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~  237 (242)
                      +++++++++|+++++++
T Consensus       428 ~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          428 SNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             TTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            78999999999998854

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.80  E-value=5.6e-20  Score=156.15  Aligned_cols=203  Identities=15%  Similarity=0.160  Sum_probs=133.2

Q ss_pred             CCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---ccccccC-CCCCCEE---Eeecc
Q psy6548          20 PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHYE-DVRPDIV---ILGKA   91 (242)
Q Consensus        20 ~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~~~~---~~sK~   91 (242)
                      ++++++++.+. |||+| ..++++.+++|+++|++||+++|+||+|.+|...+.   ......+ ....+++   +|||.
T Consensus       172 ~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  250 (405)
T 3k7y_A          172 PNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN  250 (405)
T ss_dssp             CSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred             CCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence            45677777765 89999 566889999999999999999999999998754321   0111111 1223433   38999


Q ss_pred             cc-CCccchheeEe---ChhhhhccCCC---CCCCCC-CCCHHHHHHHHHHHHHH------Hh--ccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLA---DDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~---~~~~~~~l~~~---~~~~~~-~~~~~~~~~a~a~l~~~------~~--~~~~~~~~~~~~~l~  155 (242)
                      |+ +| +|+||+++   ++++++.+...   .....+ +.+.+++.++.++++.-      .+  ..+.+.++++++.+.
T Consensus       251 ~~l~G-lRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~  329 (405)
T 3k7y_A          251 MSLYG-ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF  329 (405)
T ss_dssp             SCCTT-TTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 99 99999753   56555444211   011222 34556666655555431      11  234566888899999


Q ss_pred             HHHHh----hcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHH
Q psy6548         156 SELRS----RLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDI  229 (242)
Q Consensus       156 ~~l~~----~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~  229 (242)
                      +.| +    .++.  .+....+..|+++|+.++.      +++++|.++||.+.|++    ||++.. .+++++++++++
T Consensus       330 ~~L-~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------~~~~~L~~~gV~v~p~~----Ris~a~-~~~~~i~~~~~~  397 (405)
T 3k7y_A          330 NKL-ETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------KIAEHLKTHHIYIINNG----RINVSG-ITKNNVDYIADK  397 (405)
T ss_dssp             HHH-HHHGGGGTCCCCGGGGSSCCSSEEECGGGG------GGTTTTTTTTEECCTTS----EEEGGG-CCTTHHHHHHHH
T ss_pred             HHH-HhhhhhcCCCCCCccccCCceEEEecCCCH------HHHHHHHHCCEeecCCC----eEEEec-cCHHHHHHHHHH
Confidence            999 5    6642  1222234567788876543      33456678899999964    998442 377899999999


Q ss_pred             HHHHHHH
Q psy6548         230 IINTINT  236 (242)
Q Consensus       230 l~~~l~~  236 (242)
                      |++++..
T Consensus       398 i~~~~~~  404 (405)
T 3k7y_A          398 ICLSLSQ  404 (405)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.80  E-value=9.9e-20  Score=151.52  Aligned_cols=202  Identities=13%  Similarity=0.113  Sum_probs=129.9

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCC--CCCCEEE--eeccccC
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYED--VRPDIVI--LGKALSG   94 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~--~~~~~~~--~sK~~~~   94 (242)
                      ++++|+++++ +++|.+. +.+++++|+++|++||+++|+||+|.+|  +..+..  ....+  ..+|+++  .+|. ++
T Consensus       145 ~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~  219 (359)
T 1svv_A          145 IPKLVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GG  219 (359)
T ss_dssp             EEEEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TC
T ss_pred             CceEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CC
Confidence            4899999988 6788555 5689999999999999999999999654  322211  11101  2356666  4575 44


Q ss_pred             CccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          95 GLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                      . .++|+++.++++++.+.+..  .+.++..+.....+..++++...-+++.++++++++++++.| +..+  +....+.
T Consensus       220 ~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~~~~~~~  295 (359)
T 1svv_A          220 M-FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACG--IRLAWPS  295 (359)
T ss_dssp             S-SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTT--CCBSSCC
T ss_pred             C-CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCC--eEEccCC
Confidence            4 56788888888877665421  222233233332222222221001346677888888888888 5432  2111133


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHC-Cceecc---CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKP---ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~---~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .++++++.++      .++.++|.++ ||.+.+   .+++++|++++...+++++++++++|+++++++
T Consensus       296 ~~~~~~~~~~------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          296 ASNQLFPILE------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             SSSEECBEEE------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ccceEEEEcC------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            4566666553      3688899999 999854   246789999988899999999999999887654

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.80  E-value=8.2e-19  Score=148.72  Aligned_cols=213  Identities=15%  Similarity=0.138  Sum_probs=144.0

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|..+. .+...   .++  
T Consensus       132 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~-~~~~~---~~~--  201 (398)
T 1gc0_A          132 LRHVDMADLQALEAAMTPATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPY-LQRPL---ELG--  201 (398)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHH-HCCGG---GGT--
T ss_pred             EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccc-cCCch---hhC--
Confidence            44567788888 4444568999999999999998775    9999999999999999999996431 12111   123  


Q ss_pred             CCEE--EeeccccC-Cccch-heeEeChhhhh-ccCCCCCC-CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          83 PDIV--ILGKALSG-GLYPI-SAVLADDEVMG-TLVPGTHG-STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        83 ~~~~--~~sK~~~~-g~~~~-g~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      .|++  +++|++++ | .|+ |+++++++.++ .+.+.... .+.+.+++.+.++.++++.+  +...+...++...+.+
T Consensus       202 ~d~~~~S~sK~~~~~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~  278 (398)
T 1gc0_A          202 ADLVVHSATKYLSGHG-DITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NLRMDRHCANAQVLAE  278 (398)
T ss_dssp             CSEEEEETTTTTTCSS-SCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCccccCCCC-CCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--HHHHHHHHHHHHHHHH
Confidence            4555  47899994 5 676 88888877655 45543333 34456788777776666643  2245566777777778


Q ss_pred             HHHhhcCC-------CC--------C-CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---C------------
Q psy6548         157 ELRSRLSP-------DI--------V-PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---I------------  205 (242)
Q Consensus       157 ~l~~~l~~-------~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~------------  205 (242)
                      .| +.++.       ..        . ....+.+.++.+.++..   .+...+.+.+.|+.+..   +            
T Consensus       279 ~L-~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~  354 (398)
T 1gc0_A          279 FL-ARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---IGAGRRFMNALQLFSRAVSLGDAESLAQHPASM  354 (398)
T ss_dssp             HH-HTCTTEEEEEEC----------------CCTTEEEEEETTH---HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT
T ss_pred             HH-hcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---HHHHHHHHHhCCCceeccCCCCcceeeeccccc
Confidence            78 54321       00        0 00124577888887642   34455666677766532   1            


Q ss_pred             ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 ---------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                     .++.+|++++...++++++.+.+.|+++
T Consensus       355 ~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          355 THSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             TTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence                           1479999999998999999988888764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.80  E-value=2.3e-18  Score=149.20  Aligned_cols=221  Identities=14%  Similarity=0.075  Sum_probs=149.3

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      ++.+|.+     |+++ +...++++++|+++++ |++|.+.   +.+++|+++|++||+++|+||+|.... .|.. ...
T Consensus       180 vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~~-~g~~-~~~  253 (474)
T 1wyu_B          180 VREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNAI-MGWA-RPG  253 (474)
T ss_dssp             EEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTC-CHH
T ss_pred             EEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhhh-ccCC-Ccc
Confidence            4455654     6777 4444567999999986 5678652   239999999999999999999996421 2211 111


Q ss_pred             cCCCCCCEEEe--eccccC-----CccchheeEeChhhhhccCCCC-------------------CCCCCCCCHHHHHHH
Q psy6548          78 YEDVRPDIVIL--GKALSG-----GLYPISAVLADDEVMGTLVPGT-------------------HGSTYGGNPLACKLA  131 (242)
Q Consensus        78 ~~~~~~~~~~~--sK~~~~-----g~~~~g~~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~~a  131 (242)
                      .+  .+|++++  +|+|++     | .++|++++++++++.+....                   ...+++.+++++.++
T Consensus       254 ~~--g~di~~~s~~K~~~~p~g~gG-~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  330 (474)
T 1wyu_B          254 DM--GFDVVHLNLHKTFTVPHGGGG-PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRA  330 (474)
T ss_dssp             HH--TCSEEECCTTTTTCCCCTTSC-CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHH
T ss_pred             cC--CCcEEEEeCccccccCCCCCC-CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHH
Confidence            12  3688885  798873     4 58999999998887775210                   012234677777777


Q ss_pred             HHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---
Q psy6548         132 MTALDVILEEN---MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---  205 (242)
Q Consensus       132 ~a~l~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---  205 (242)
                      ++.++.+..+.   ..++.+++++++++.| ++++-.... .......+++.++.. .+..++.++|.++||.+...   
T Consensus       331 ~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L-~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~l~~~L~~~Gi~~~~~~~~  407 (474)
T 1wyu_B          331 WAYIRTLGLEGLKKAAALAVLNARYLKELL-KEKGYRVPY-DGPSMHEFVAQPPEG-FRALDLAKGLLELGFHPPTVYFP  407 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCBCSS-CSSCCSCEEEBCSTT-CCHHHHHHHHHHTTCCCCEESCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCcEecC-CCCcceEEEEEcCCC-CCHHHHHHHHHHCCccccccccc
Confidence            77776543333   4677888999999999 555311111 111111145555322 46789999999999986311   


Q ss_pred             --CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 --SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 --~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                        ..+.+|++++...+++++++++++|++++++
T Consensus       408 ~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          408 LIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             cccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence              2578999998888999999999999988753

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.80  E-value=9.8e-20  Score=157.21  Aligned_cols=214  Identities=12%  Similarity=0.162  Sum_probs=139.5

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|... ....+  ..   ..
T Consensus       199 v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~g-~~~~~--~~---~~  268 (464)
T 1ibj_A          199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP-VLSRP--LE---LG  268 (464)
T ss_dssp             EEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT-TTCCG--GG---TT
T ss_pred             EEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCccc-ccCCh--hh---cC
Confidence            45678888888 5544578999999999999997775    999999999999999999999631 11111  11   24


Q ss_pred             CCEEE--eeccccC--CccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG--GLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~--~sK~~~~--g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      .|+++  ++|++++  | +++|++++++ ++++.+........+..+++.+.++.++++.+..  ..+....+...+.+.
T Consensus       269 ~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~--r~~~~~~~~~~l~~~  345 (464)
T 1ibj_A          269 ADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAMY  345 (464)
T ss_dssp             CSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHH
T ss_pred             CEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHH--HHHHHHHHHHHHHHH
Confidence            57665  7899985  7 7889999884 7777665432112334567777776666653321  112222233333444


Q ss_pred             HHhhcC-------CCCC---------CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC---------------
Q psy6548         158 LRSRLS-------PDIV---------PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS---------------  206 (242)
Q Consensus       158 l~~~l~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------------  206 (242)
                      + +..+       ....         ....+.|.++++.+... .....+.+.|...||.+++++               
T Consensus       346 l-~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~  423 (464)
T 1ibj_A          346 L-SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV-ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHAS  423 (464)
T ss_dssp             H-HTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH-HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCS
T ss_pred             H-HhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH-HHHHHHHHhcCcceEeecCCCCceeeeccccccccc
Confidence            4 2211       0000         01123467888888532 234568888877777765442               


Q ss_pred             ------------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 ------------NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 ------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                  ++++|++++.    |++++++++|++++++
T Consensus       424 ~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          424 IPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             CCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             CCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence                        4689999665    8999999999998865

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.80  E-value=8.3e-19  Score=151.43  Aligned_cols=220  Identities=15%  Similarity=0.089  Sum_probs=140.9

Q ss_pred             Chhh--hcCCC---CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--c--------CccCcccc
Q psy6548          11 QVPA--KLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L--------GRTGKLLA   75 (242)
Q Consensus        11 d~~~--~~~~~---~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~--------~~~g~~~~   75 (242)
                      |+++  +.+.+   +++++|++++++|++|+.+++.+++++|+++|++||+++|+||++..  .        +..+... 
T Consensus       168 d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~-  246 (467)
T 1ax4_A          168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI-  246 (467)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCH-
T ss_pred             CHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCch-
Confidence            5666  34433   47999999999999966888899999999999999999999998742  1        1112110 


Q ss_pred             cccCC----CCCCEEE--eeccccCCccch-heeEeC-h-hhhhccCCCC----CCCCCCCCHHH-HHHHHHHHHHHHhc
Q psy6548          76 IHYED----VRPDIVI--LGKALSGGLYPI-SAVLAD-D-EVMGTLVPGT----HGSTYGGNPLA-CKLAMTALDVILEE  141 (242)
Q Consensus        76 ~~~~~----~~~~~~~--~sK~~~~g~~~~-g~~~~~-~-~~~~~l~~~~----~~~~~~~~~~~-~~~a~a~l~~~~~~  141 (242)
                       ...+    ..+|+++  ++|+++   .++ |+++++ + ++++.+....    ...+++..+.. +.++.++++....+
T Consensus       247 -~~~~~~~~~~~d~~~~s~sK~~g---~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  322 (467)
T 1ax4_A          247 -KEVIFDMYKYADALTMSAKKDPL---LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEE  322 (467)
T ss_dssp             -HHHHHHHGGGCSEEEEETTSTTC---CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCH
T ss_pred             -hhhhhhhccccceEEEeccccCC---CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhh
Confidence             0000    1245554  668886   444 456566 5 6766553211    11233333332 22222245543333


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEE-------ecCCchhHHHHHHHH-HHCCceecc-C-------
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIV-------LDKSILEVYDVCIKM-KDAGLVTKP-I-------  205 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l-~~~gi~~~~-~-------  205 (242)
                      +...+..++++++++.| ++.+  +....+..++++|+.       ++....+..++.+.| .++||.+.+ +       
T Consensus       323 ~~~~~~~~~~~~l~~~L-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~  399 (467)
T 1ax4_A          323 EYLHYRIGQVKYLGDRL-REAG--IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD  399 (467)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTT--CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred             hHHHHHHHHHHHHHHHH-HhCC--CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc
Confidence            34555567788899999 5532  221123456778887       432213577899999 889999977 2       


Q ss_pred             ---C------CCEEEEecc-CcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ---S------NNIIRLSPA-LNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ---~------~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                         +      .+++|++++ ...|++++++++++|++++++..
T Consensus       400 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          400 PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  442 (467)
T ss_dssp             TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             cccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence               1      278999987 44899999999999999888753

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.80  E-value=3.7e-19  Score=150.66  Aligned_cols=214  Identities=14%  Similarity=0.147  Sum_probs=146.0

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|+.. ...     ...+..
T Consensus       133 ~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-~~~-----~~~~~~  202 (392)
T 3qhx_A          133 YTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-ALQ-----QPLSLG  202 (392)
T ss_dssp             EEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTC-----CGGGGT
T ss_pred             EEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-ccC-----ChHHhC
Confidence            45678888988 5555568999999999999997765    999999999999999999999632 111     112345


Q ss_pred             CCEEE--eeccccC-CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~-g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +|+++  ++|.+++ |-.++|+++++ +++++.+.......+...+++.+.++...++.+..  ..++..++...+.+.|
T Consensus       203 ~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~l~~~L  280 (392)
T 3qhx_A          203 ADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVL--RMQRHSENAAAVAEFL  280 (392)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHH
Confidence            68777  7899994 32578999887 57777766543444556777777666666554332  3456677778888888


Q ss_pred             HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------
Q psy6548         159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------  205 (242)
Q Consensus       159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------  205 (242)
                       +..+..       ...         ...+.|.++++.++.+....+.+.+.|...|+.++.+                 
T Consensus       281 -~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~  359 (392)
T 3qhx_A          281 -AEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHAST  359 (392)
T ss_dssp             -HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGG
T ss_pred             -hcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccccccccc
Confidence             554320       000         0133478999999874346777888877666665432                 


Q ss_pred             -------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548         206 -------SNNIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       206 -------~~~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                             .++.+|+++....+++.++.+.+.|
T Consensus       360 ~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          360 AGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             BTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence                   2467999977666665565555544

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.80  E-value=3.2e-18  Score=146.30  Aligned_cols=216  Identities=19%  Similarity=0.207  Sum_probs=143.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC----------CEEEEeccccccCccCcccccccC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN----------VLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~----------~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      |+++ +...++++++|++++++|++|.+.+    +++|.++|++||          +++|+||+|. ++...  ....  
T Consensus       164 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~--  234 (432)
T 3a9z_A          164 EVEDILAAVRPTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVE--  234 (432)
T ss_dssp             CHHHHHHTCCTTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHH--
T ss_pred             CHHHHHHhccCCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChh--
Confidence            4555 4444567999999999999998776    789999999999          9999999995 32221  1111  


Q ss_pred             CCCCCEEE--eeccccCCccchheeEeChhh-hhccCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHH
Q psy6548          80 DVRPDIVI--LGKALSGGLYPISAVLADDEV-MGTLVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENA  147 (242)
Q Consensus        80 ~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~-~~~l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~  147 (242)
                      ...+|+++  ++|++|   .++||++++++. ...+.+...+       ..++.++.+++++.++++.+.+  +++.+++
T Consensus       235 ~~~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~  311 (432)
T 3a9z_A          235 DLGVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHM  311 (432)
T ss_dssp             HHCCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            12457666  589875   569999998765 4445443221       2345677777777778886654  4567888


Q ss_pred             HHHHHHHHHHHHhhc-CCCCC--C---eEeeeceeEEEEecCCchhHHHHHHHHH----HCCceeccC------------
Q psy6548         148 YKMGEIFRSELRSRL-SPDIV--P---VVRGKGLLNAIVLDKSILEVYDVCIKMK----DAGLVTKPI------------  205 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l-~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~gi~~~~~------------  205 (242)
                      +++++++.+.| +++ +..+.  .   .....+.+.++.++....+..++.+.+.    +.|+.+.+.            
T Consensus       312 ~~~~~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~  390 (432)
T 3a9z_A          312 RDIRDYLEERL-EAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSC  390 (432)
T ss_dssp             HHHHHHHHHHH-HHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHT
T ss_pred             HHHHHHHHHHH-HhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhc
Confidence            88999999998 553 21110  0   0112344666777652123455555442    223333221            


Q ss_pred             ------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         206 ------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       206 ------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                            ..+++|++++..+|++|+++++++|+++++++.+
T Consensus       391 g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          391 GIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             TCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence                  1378999999888999999999999999887643

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.79  E-value=1.8e-18  Score=146.60  Aligned_cols=209  Identities=13%  Similarity=0.096  Sum_probs=139.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC-ccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+.++++|+++   +++|.+.+    +++|+++|++||+++|+||+|+.+. ..+.     .++..+|++++
T Consensus       140 d~~~l~~~i~~~~~~v~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~  207 (399)
T 2oga_A          140 DPLLVEKAITPRTRALLPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAF  207 (399)
T ss_dssp             CHHHHHHHCCTTEEEECCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEE
T ss_pred             CHHHHHHhcCCCCeEEEEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEE
Confidence            5666 43334578888753   45776654    9999999999999999999996321 1121     12333578776


Q ss_pred             ----eccccC-CccchheeEeC-hhhhhccCCCC-C-----------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy6548          89 ----GKALSG-GLYPISAVLAD-DEVMGTLVPGT-H-----------GSTYGGNPLACKLAMTALDVILEENMIENAYKM  150 (242)
Q Consensus        89 ----sK~~~~-g~~~~g~~~~~-~~~~~~l~~~~-~-----------~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~  150 (242)
                          ||++++ |  ++|+++.+ +++++.+.+.. .           +.++..+++.++++.++++.++  ++.++.+++
T Consensus       208 S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~  283 (399)
T 2oga_A          208 SFYPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSAL  283 (399)
T ss_dssp             ECCTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHH
T ss_pred             eCCCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence                499985 5  68888876 77766554311 1           2334567888877777776543  355667777


Q ss_pred             HHHHHHHHHhhcCCCCCCeEeeeceeE--EEEecCCchhHHHHHHHHHHCCceeccCCC---------------------
Q psy6548         151 GEIFRSELRSRLSPDIVPVVRGKGLLN--AIVLDKSILEVYDVCIKMKDAGLVTKPISN---------------------  207 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~---------------------  207 (242)
                      ++++++.| +.++.......+..+...  .+.+..  .+..++.+.|.++||.+++...                     
T Consensus       284 ~~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~  360 (399)
T 2oga_A          284 AAEYLSGL-AGLPGIGLPVTAPDTDPVWHLFTVRT--ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPR  360 (399)
T ss_dssp             HHHHHHHT-TTCTTCBCCCCCTTEECCCSSEEEEC--SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHH
T ss_pred             HHHHHHHh-ccCCCccccCCCCCCcceeEEEEEEC--CCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChh
Confidence            88888888 555321111111112222  243333  2567899999999999986431                     


Q ss_pred             ------CEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         208 ------NIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       208 ------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                            +.+|++++..+|++|++++++.|+++++++.
T Consensus       361 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          361 AESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                  5799999999999999999999999987653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.79  E-value=6.2e-18  Score=140.95  Aligned_cols=206  Identities=15%  Similarity=0.095  Sum_probs=144.2

Q ss_pred             CChhh-hc-CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548          10 KQVPA-KL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        10 ~d~~~-~~-~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      .|+++ +. ..++++++|++++++|++|.+.+         +++++||+++|+||+|+.+...   .....+    |+++
T Consensus       128 ~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~  191 (360)
T 1w23_A          128 QSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIY  191 (360)
T ss_dssp             CSCCCGGGCCCCTTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEE
T ss_pred             CCccchHhhccCCCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEE
Confidence            45566 44 44678999999999999997655         2333899999999999743211   111222    5666


Q ss_pred             --eeccccCCccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHh----ccHHHHHHH
Q psy6548          88 --LGKALSGGLYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILE----ENMIENAYK  149 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~----~~~~~~~~~  149 (242)
                        ++|.++.  .++||+++++++++.+.+..           .+.++ +.+..++.++.++++.+.+    +++.++.++
T Consensus       192 ~s~sK~~~~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  269 (360)
T 1w23_A          192 AGAQKNLGP--SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEE  269 (360)
T ss_dssp             EETTTTTSC--TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             EEcccccCC--CCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence              5699972  35899999998888776532           11222 3355666666777776543    346778888


Q ss_pred             HHHHHHHHHHhhcCCCCCC---eEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHH
Q psy6548         150 MGEIFRSELRSRLSPDIVP---VVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQEL  223 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i  223 (242)
                      +++++.+.| +.++. +..   ... ..+.++++.++.. .+..++.+.|.++||.+.++.  .+++|++++..++++++
T Consensus       270 ~~~~l~~~L-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i  346 (360)
T 1w23_A          270 KAKIIYDTI-DESNG-FYVGHAEKGSRSLMNVTFNLRNE-ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDAC  346 (360)
T ss_dssp             HHHHHHHHH-HTTTT-SSEESSCGGGBCSSEEEEECSSH-HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHH
T ss_pred             HHHHHHHHH-HHccC-cccccCCchhccCcEEEEEcCCC-ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHH
Confidence            899999999 66642 211   111 2345888888664 467789999999999998763  47899999888899999


Q ss_pred             HHHHHHHHHHHHH
Q psy6548         224 REGLDIIINTINT  236 (242)
Q Consensus       224 ~~~~~~l~~~l~~  236 (242)
                      ++++++|++++++
T Consensus       347 ~~~~~~l~~~~~~  359 (360)
T 1w23_A          347 IALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.79  E-value=4.2e-19  Score=150.32  Aligned_cols=203  Identities=15%  Similarity=0.071  Sum_probs=130.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---ccccccC-CCCCCE---EEeecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHYE-DVRPDI---VILGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~~~---~~~sK~   91 (242)
                      +++++++++++++|++|. ..+.+.+++|+++|++||+++|+||+|.+++..+.   ......+ +..+++   .++||.
T Consensus       173 ~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~  251 (401)
T 7aat_A          173 PEKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN  251 (401)
T ss_dssp             CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred             CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcc
Confidence            467899999999999995 56778899999999999999999999988755432   1111111 122333   348999


Q ss_pred             cc-CCccchheeEe---Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHH------H--hccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLA---DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI------L--EENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~------~--~~~~~~~~~~~~~~l~  155 (242)
                      ++ +| +|+||+++   +++    +...+.......+.+.+..++.++..+++..      .  -++..++++++++++.
T Consensus       252 ~~~~G-~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~  330 (401)
T 7aat_A          252 MGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV  330 (401)
T ss_dssp             SCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-CceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 88 99999875   554    3333332212223334445554444344211      1  1345677888888899


Q ss_pred             HHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         156 SELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       156 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +.| ++++.  ......+..+++.|+.++     .+.+...+.++||.+.+.    +|++++.. ++++++++++.|+++
T Consensus       331 ~~L-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~~~----~Ris~~~~-~~~~i~~~~~~l~~~  399 (401)
T 7aat_A          331 SNL-KKEGSSHNWQHITDQIGMFCFTGLK-----PEQVERLTKEFSIYMTKD----GRISVAGV-ASSNVGYLAHAIHQV  399 (401)
T ss_dssp             HHH-HHTTCCSCCHHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred             HHH-HhcCCCCCCceecCCcceEEecCCC-----HHHHHHHHHhCCEeccCC----CeEEeccC-ChhhHHHHHHHHHHH
Confidence            999 66541  122223445666665442     334444446789999765    68987654 555699999999886


Q ss_pred             H
Q psy6548         234 I  234 (242)
Q Consensus       234 l  234 (242)
                      +
T Consensus       400 ~  400 (401)
T 7aat_A          400 T  400 (401)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.79  E-value=4.2e-18  Score=142.77  Aligned_cols=215  Identities=16%  Similarity=0.168  Sum_probs=138.1

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH   77 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~   77 (242)
                      +..+|.+     |+++ +...+.++++|+   ++|++|...+    +++|.++|++||+++|+||+|+.+..    +...
T Consensus       102 ~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~  170 (374)
T 3uwc_A          102 PVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDK  170 (374)
T ss_dssp             EEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTE
T ss_pred             EEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCe
Confidence            3445554     6776 444455788887   5567886654    99999999999999999999973211    1112


Q ss_pred             cCCCCCCEEEee----ccccC-CccchheeEeC-hhhhhccCCCC------------CCCCCCCCHHHHHHHHHHHHHHH
Q psy6548          78 YEDVRPDIVILG----KALSG-GLYPISAVLAD-DEVMGTLVPGT------------HGSTYGGNPLACKLAMTALDVIL  139 (242)
Q Consensus        78 ~~~~~~~~~~~s----K~~~~-g~~~~g~~~~~-~~~~~~l~~~~------------~~~~~~~~~~~~~~a~a~l~~~~  139 (242)
                      ..+..+|++++|    |++++ | . +|+++++ +++++.+....            .+.++..+++..+.+...++.+ 
T Consensus       171 ~~~~~~d~~~~s~~~~K~l~~~g-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~-  247 (374)
T 3uwc_A          171 FVGSWGQFACFSLHPLKNLNVWS-D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL-  247 (374)
T ss_dssp             ETTSSSSEEEEECSSSSSSCCSS-C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH-
T ss_pred             eccccccEEEEeCCCCCcCCccc-e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH-
Confidence            334446888876    99997 6 4 7777765 45544443211            1223334555544443333222 


Q ss_pred             hccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----------
Q psy6548         140 EENMIENAYKMGEIFRSELRSRLSP--DIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----------  206 (242)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------  206 (242)
                       +++.++.+++.+++++.| +.++.  ....... ....++.+.+..  .+..++.++|.++||.+++..          
T Consensus       248 -~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~  323 (374)
T 3uwc_A          248 -ETITEKRRGIAHLYDQSF-VDLSEFIDVPVRREGVYHVFHIYVLRV--KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAA  323 (374)
T ss_dssp             -HHHHHHHHHHHHHHHHHT-GGGTTTEECCCCCTTEECCCSSEEEEE--TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGG
T ss_pred             -HHHHHHHHHHHHHHHHHh-ccCCCeEEeccCCCCCceeeEEEEEEc--CCHHHHHHHHHHCCCccccCCCCccccChhh
Confidence             346677788888888888 66542  1111111 111212222222  257889999999999987753          


Q ss_pred             -----------------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 -----------------NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 -----------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                       .+.+|++++..+|++|++++++.|++++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          324 KSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             GGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence                             168999999999999999999999998875

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.78  E-value=1.7e-18  Score=147.41  Aligned_cols=214  Identities=16%  Similarity=0.146  Sum_probs=137.1

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |+++  +.+.++++++|+++++++  |..    ..+++|+++|++||+++|+||+| .|+...+....  ... ..|+++
T Consensus       160 d~~~l~~~i~~~~~~~v~~~~~~~--~~~----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~--~~~-~~di~~  230 (425)
T 3ecd_A          160 DYDQVEALAQQHKPSLIIAGFSAY--PRK----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHAN--PVE-HAHVVT  230 (425)
T ss_dssp             CHHHHHHHHHHHCCSEEEEECSCC--CSC----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--GGG-TCSEEE
T ss_pred             CHHHHHHHHhhcCCcEEEEccccC--CCc----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccC--chh-cCcEEE
Confidence            5666  344445788888885444  322    23899999999999999999997 44433332211  111 146665


Q ss_pred             --eeccccCCccchheeEeC-hhhhhccCCCCCCC-CCCCCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHHHHh
Q psy6548          88 --LGKALSGGLYPISAVLAD-DEVMGTLVPGTHGS-TYGGNPLACKLAMTALDVIL-E--ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        88 --~sK~~~~g~~~~g~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~a~a~l~~~~-~--~~~~~~~~~~~~~l~~~l~~  160 (242)
                        +||+++ | .++||++++ +.+.+.+......+ +.+.+...++++.+++.... .  +++.++++++++++++.| +
T Consensus       231 ~s~sK~l~-g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L-~  307 (425)
T 3ecd_A          231 STTHKTLR-G-PRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVL-K  307 (425)
T ss_dssp             EESSGGGC-C-CSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ecCCcccC-C-CCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-H
Confidence              669995 4 578999988 56666554422222 22333444444444444322 2  356788888999999999 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC------CCCEEEEeccCc----CCHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPALN----ITEQELREG  226 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~lR~~~~~~----~t~e~i~~~  226 (242)
                      ..+-... .....++++++.++....+...+.+.|.++||.+.    |+      ..+.+|++++..    .++++++++
T Consensus       308 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~  386 (425)
T 3ecd_A          308 AGGVDLV-TGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREV  386 (425)
T ss_dssp             HTTCEEG-GGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred             hCCCeec-cCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHH
Confidence            5442111 11235678888876532467788899999999998    43      235899995544    459999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         227 LDIIINTINTM  237 (242)
Q Consensus       227 ~~~l~~~l~~~  237 (242)
                      ++.|++++++.
T Consensus       387 ~~~l~~~l~~~  397 (425)
T 3ecd_A          387 GRLILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999998875

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.78  E-value=1.6e-17  Score=139.06  Aligned_cols=210  Identities=11%  Similarity=0.099  Sum_probs=134.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE--E
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV--I   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--~   87 (242)
                      |+++ +...++++++|++.++   +|.+.+    +++|.++|++||+++|+||+|+.. .....   ...+..+|+.  +
T Consensus       110 d~~~l~~~i~~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~~~---~~~~~~~~i~~~s  178 (375)
T 2fnu_A          110 DELALEKLINERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHALG-SEYQN---KKVGGFALASVFS  178 (375)
T ss_dssp             CGGGSGGGCCTTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCTT-CEETT---EETTSSSSEEEEE
T ss_pred             CHHHHHhhcCcCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccccC-CeECC---eeccccCCeEEEe
Confidence            5566 4444557888776655   676655    899999999999999999999632 11111   1122223444  5


Q ss_pred             ee--ccccCCccchheeEe-C-hhhhhccCCCC----------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          88 LG--KALSGGLYPISAVLA-D-DEVMGTLVPGT----------------HGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        88 ~s--K~~~~g~~~~g~~~~-~-~~~~~~l~~~~----------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                      +|  |++++|   +|+++. + +++++.+.+..                .+.++..+++..+++...++.+  ++..++.
T Consensus       179 ~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  253 (375)
T 2fnu_A          179 FHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKR  253 (375)
T ss_dssp             CCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHH
T ss_pred             CCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHH
Confidence            77  999754   577766 3 66665554321                1122244555554444333322  3466778


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCeE----eeeceeEEEEecCCch-hHHHHHHHHHHCCceeccC----C------------
Q psy6548         148 YKMGEIFRSELRSRLSPDIVPVV----RGKGLLNAIVLDKSIL-EVYDVCIKMKDAGLVTKPI----S------------  206 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~----~------------  206 (242)
                      +++++++++.| ++++.......    ...++++++.++.... +..++.+.|.++||.++..    .            
T Consensus       254 ~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~  332 (375)
T 2fnu_A          254 EEAALTYDRIF-KDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTA  332 (375)
T ss_dssp             HHHHHHHHHHH-TTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCC
T ss_pred             HHHHHHHHHHh-hcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCcc
Confidence            88889999999 66532111111    1233455777764322 6788999999999999721    0            


Q ss_pred             ---------CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         207 ---------NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       207 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                               .+.+|++++..++++|++++++.|+++++++
T Consensus       333 ~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          333 PLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             CCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                     1679999998899999999999999988764

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.78  E-value=4.2e-19  Score=151.24  Aligned_cols=215  Identities=13%  Similarity=0.120  Sum_probs=139.5

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+|.+|+++ +...++++++|++|+++|++|.+.+    +++|+++|++||+++|+||+|+.. ....+   ..++ 
T Consensus       147 ~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~-~~~~~---~~~g-  217 (414)
T 3ndn_A          147 QTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP-LLQQG---FPLG-  217 (414)
T ss_dssp             EEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH-HHCCC---GGGT-
T ss_pred             EEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCc---hhcC-
Confidence            356678889998 5555568999999999999997765    999999999999999999999621 11111   1223 


Q ss_pred             CCCEEE--eeccccC-CccchheeEeChhhhh-ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSG-GLYPISAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        82 ~~~~~~--~sK~~~~-g~~~~g~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                       .|+++  +||++++ |.+++|+++++++.+. .+...........++..+..+...++.+.  ...++..+++.++.+.
T Consensus       218 -~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~  294 (414)
T 3ndn_A          218 -VDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEF  294 (414)
T ss_dssp             -CSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHH
T ss_pred             -CCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence             35555  7799995 5357899999887665 44421111112335555544444444332  2345667778888888


Q ss_pred             HHhhcCCC-------CCC---------eEeeeceeEEEEecCC----chhHHHHHHHHHHCCceeccC------------
Q psy6548         158 LRSRLSPD-------IVP---------VVRGKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKPI------------  205 (242)
Q Consensus       158 l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~~------------  205 (242)
                      | +..+..       ...         ...+.|.++++.++..    ......|.+.|...++.++.+            
T Consensus       295 L-~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~  373 (414)
T 3ndn_A          295 L-NGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATT  373 (414)
T ss_dssp             H-HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT
T ss_pred             H-hcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCcccc
Confidence            8 554321       000         1134578999999763    256778888887666655432            


Q ss_pred             ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                     .++.+|+++.    .|+.+.+++.|++++
T Consensus       374 ~~~~~~~~~~~~~g~~~~~iRlsvG----~e~~~dli~dl~~al  413 (414)
T 3ndn_A          374 THRAMGPEGRAAIGLGDGVVRISVG----LEDTDDLIADIDRAL  413 (414)
T ss_dssp             TTCTTHHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEeC----cCCHHHHHHHHHHhh
Confidence                           2568999944    456677777776665

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.77  E-value=8.8e-19  Score=150.86  Aligned_cols=222  Identities=17%  Similarity=0.104  Sum_probs=137.9

Q ss_pred             Chhh--hcCCC---CCEEEEEEccccc-CCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----------cCccCccc
Q psy6548          11 QVPA--KLKSN---PNICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----------LGRTGKLL   74 (242)
Q Consensus        11 d~~~--~~~~~---~~~~~i~~e~~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----------~~~~g~~~   74 (242)
                      |+++  +.+.+   ..+++|++++++| ++| .+.+.+++++|+++|++||+++|+||+|+.          +...|...
T Consensus       159 d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~  237 (456)
T 2ez2_A          159 DLKKLQKLIDEKGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSI  237 (456)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCH
T ss_pred             CHHHHHHHHHhccccceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcch
Confidence            5666  33332   2368999997666 888 577888999999999999999999999963          22333321


Q ss_pred             c-c-ccCCCCCCEEEee-ccccCCccchheeEe-ChhhhhccCCCC---CC-CCC-CCCHHHHHH-HHHHHHHHHhccHH
Q psy6548          75 A-I-HYEDVRPDIVILG-KALSGGLYPISAVLA-DDEVMGTLVPGT---HG-STY-GGNPLACKL-AMTALDVILEENMI  144 (242)
Q Consensus        75 ~-~-~~~~~~~~~~~~s-K~~~~g~~~~g~~~~-~~~~~~~l~~~~---~~-~~~-~~~~~~~~~-a~a~l~~~~~~~~~  144 (242)
                      . . +..+..+|++++| |.+++. -++||+++ ++++++.+....   .+ .++ +.++..+.+ +.+.++.++ +++.
T Consensus       238 ~~~~~~~~~~~d~~~~S~kk~~~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~  315 (456)
T 2ez2_A          238 AEIVHEMFSYADGCTMSGKKDCLV-NIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYI  315 (456)
T ss_dssp             HHHHHHHHTTCSEEEEETTTTTCC-SSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHH
T ss_pred             hhhhhhhcccCCEEEEeCcccCCC-CceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHH
Confidence            0 0 0112336777765 444432 24788888 577776554311   11 111 223333333 344443321 3466


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecC--Cchh-----HHHHHHHH-HHCCceeccC-----------
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDK--SILE-----VYDVCIKM-KDAGLVTKPI-----------  205 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~l-~~~gi~~~~~-----------  205 (242)
                      ++.+++.+++++.| ++.+  +....+..++++++.+..  ...+     .+.+.+.| .++||.+.+.           
T Consensus       316 ~~~~~~~~~l~~~L-~~~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~  392 (456)
T 2ez2_A          316 EHRVKQVRYLGDKL-KAAG--VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVT  392 (456)
T ss_dssp             HHHHHHHHHHHHHH-HHTT--CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTT
T ss_pred             HHHHHHHHHHHHHH-hcCC--CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccc
Confidence            77777888888888 5543  211123447788887631  1012     33447777 5789976431           


Q ss_pred             ------CCCEEEEeccCc-CCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ------SNNIIRLSPALN-ITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ------~~~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~~~  238 (242)
                            +.+.+|++++.. .+++++++++++|++++++..
T Consensus       393 g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          393 GEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             CSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             cccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                  137899998876 899999999999999988754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.77  E-value=2.9e-18  Score=148.03  Aligned_cols=221  Identities=14%  Similarity=0.095  Sum_probs=138.1

Q ss_pred             Chhh--hcCCC---CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----------cCccCccc-
Q psy6548          11 QVPA--KLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----------LGRTGKLL-   74 (242)
Q Consensus        11 d~~~--~~~~~---~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----------~~~~g~~~-   74 (242)
                      |+++  +.+.+   +++++|++++++|++|+.+++.+++++|+++|++||++||+|++|..          .+..|... 
T Consensus       168 d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~  247 (467)
T 2oqx_A          168 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE  247 (467)
T ss_dssp             CHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHH
T ss_pred             CHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHH
Confidence            6666  34432   47999999999999866888889999999999999999999976632          12222211 


Q ss_pred             ccc--cCCCCCCEE--EeeccccCCccchheeEeChh----hhhccCCCC---C-CCCCCCC-HHHHHHHHHHHHHHHhc
Q psy6548          75 AIH--YEDVRPDIV--ILGKALSGGLYPISAVLADDE----VMGTLVPGT---H-GSTYGGN-PLACKLAMTALDVILEE  141 (242)
Q Consensus        75 ~~~--~~~~~~~~~--~~sK~~~~g~~~~g~~~~~~~----~~~~l~~~~---~-~~~~~~~-~~~~~~a~a~l~~~~~~  141 (242)
                      .+.  .+ ..+|++  +++|+++.+ . .|+++++++    .+..+.+..   . ..+++.. ..++++....++....+
T Consensus       248 ~~~~~~~-~~~d~~~~s~sK~~g~~-~-Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~  324 (467)
T 2oqx_A          248 QITRETY-KYADMLAMSAKKDAMVP-M-GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL  324 (467)
T ss_dssp             HHHHHHG-GGCSEEEEESSSTTCCS-S-CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHhhhhh-ccCCeEEEecccccCCC-C-ceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhH
Confidence            110  00 113443  477999733 1 256667655    333332210   1 1112222 22222211222221112


Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecC-----Cc-h-hHHHHHHHH-HHCCceeccCC-------
Q psy6548         142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDK-----SI-L-EVYDVCIKM-KDAGLVTKPIS-------  206 (242)
Q Consensus       142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~~~~~~l-~~~gi~~~~~~-------  206 (242)
                      +..++.+++++++++.| ++++  +... +..++++++.+..     +. . +...+.+.| .++||.+.+++       
T Consensus       325 ~~~~~~~~~~~~l~~~L-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~  400 (467)
T 2oqx_A          325 DWLAYRIAQVQYLVDGL-EEIG--VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD  400 (467)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTT--CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred             HHHHHHHHHHHHHHHHH-HHCC--Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccc
Confidence            34566678889999999 6553  2222 4557788888742     10 1 156678888 88999998732       


Q ss_pred             ----------CCEEEEeccCc-CCHHHHHHHHHHHHHHHHHHh
Q psy6548         207 ----------NNIIRLSPALN-ITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       207 ----------~~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~~~  238 (242)
                                .+++|++++.. ++++++++++++|++++++..
T Consensus       401 ~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             TTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             ccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                      27999999988 999999999999999988754

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.77  E-value=1.2e-18  Score=149.45  Aligned_cols=216  Identities=15%  Similarity=0.106  Sum_probs=141.5

Q ss_pred             ccccCCCChhh-hcCCCCCE-EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~-~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|.+|+++ +...++++ ++|++|+++|++|.+.+    +++|+++|++||+++|+|++|+... ..     .....
T Consensus       181 v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~~-~~-----~~~~~  250 (445)
T 1qgn_A          181 ATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATPL-NQ-----KALAL  250 (445)
T ss_dssp             EEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT-TC-----CTTTT
T ss_pred             EEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc-cC-----Ccccc
Confidence            45678888888 44333456 99999999999997775    8999999999999999999996321 11     11234


Q ss_pred             CCCEEE--eeccccCC-ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSGG-LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        82 ~~~~~~--~sK~~~~g-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      .+|+++  ++|.++++ -.++|++++++++++.+...........+++.+..+...++.+.  ...++..++++++.+.|
T Consensus       251 g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L  328 (445)
T 1qgn_A          251 GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEIL  328 (445)
T ss_dssp             TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHH
Confidence            578877  67999953 13689999999888777542111112235555444444554332  22345566678888888


Q ss_pred             HhhcCCC--C--C---C---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------
Q psy6548         159 RSRLSPD--I--V---P---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------  205 (242)
Q Consensus       159 ~~~l~~~--~--~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------  205 (242)
                       +..+..  +  +   .         ...+.+.+++|.++....+...+.+.|...++.++.+                 
T Consensus       329 -~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~  407 (445)
T 1qgn_A          329 -EAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDL  407 (445)
T ss_dssp             -HTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTS
T ss_pred             -hcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccC
Confidence             554321  0  0   0         0123678899999764234666777665334433211                 


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                .++.+|+++.    .||++++++.|++++++
T Consensus       408 ~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          408 SQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             CHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence                      2478999944    56899999999998865

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.77  E-value=1.5e-18  Score=147.58  Aligned_cols=215  Identities=16%  Similarity=0.111  Sum_probs=138.4

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+.++++++|+++++++  |...+    +++|+++|++||+++|+||+|. ++...+....  ... .+|++
T Consensus       156 ~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~di~  226 (420)
T 3gbx_A          156 IDYDEMAKLAKEHKPKMIIGGFSAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN--PVP-HAHVV  226 (420)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECCTTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC--STT-TSSEE
T ss_pred             cCHHHHHHHHHhcCCeEEEEecCcc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCc--ccc-cCCEE
Confidence            56666  444444688888876443  33333    9999999999999999999984 4433332111  111 26787


Q ss_pred             E--eeccccCCccchheeEeCh---hhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHH
Q psy6548          87 I--LGKALSGGLYPISAVLADD---EVMGTLVPGTHGSTYGGN-PLACKLAMTALDVIL-E--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~-~--~~~~~~~~~~~~~l~~~  157 (242)
                      +  +||+++|  .+.|++++++   ++++.+......++.+.+ ...++++..++.... .  +++.++++++++++++.
T Consensus       227 ~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  304 (420)
T 3gbx_A          227 TTTTHKTLAG--PRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEV  304 (420)
T ss_dssp             EEESSGGGCS--CSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccCCCC--CCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            7  6699974  4468898887   677666543333333333 333333333443321 1  34678888889999999


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------C---CCCEEEEeccCc----CCHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------I---SNNIIRLSPALN----ITEQEL  223 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~---~~~~lR~~~~~~----~t~e~i  223 (242)
                      | +..+-... .....++++++.++....+...+.+.|.++||.+.+       +   +++.+|++++..    .+++++
T Consensus       305 L-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i  382 (420)
T 3gbx_A          305 F-LNRGYKVV-SGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEV  382 (420)
T ss_dssp             H-HHTTCEEG-GGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred             H-HhcCCeec-cCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHH
Confidence            9 55432111 111356778888765324577888899999999987       2   345699997654    458999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         224 REGLDIIINTINTM  237 (242)
Q Consensus       224 ~~~~~~l~~~l~~~  237 (242)
                      +++++.|++++++.
T Consensus       383 ~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          383 KELAGWMCDVLDNI  396 (420)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999988653

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.76  E-value=3e-18  Score=145.86  Aligned_cols=208  Identities=13%  Similarity=0.075  Sum_probs=132.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---cccccc-CCCCCCEE---Eeecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHY-EDVRPDIV---ILGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~-~~~~~~~~---~~sK~   91 (242)
                      ++++.++++.+++||+| ..++++.+++|+++|++|++++|+||+|.+|...+.   .+.... .+....++   +|||.
T Consensus       188 ~~~~~vll~~~p~NPtG-~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  266 (420)
T 4h51_A          188 PDGSVFILHQCAHNPTG-VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKN  266 (420)
T ss_dssp             CSSCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred             CCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccc
Confidence            56788888899999999 677889999999999999999999999998854332   111111 11122333   38999


Q ss_pred             cc-CCccchheeEeChhhhhccCCC------CCCCCC-CCCHHHHHHHHHHHHH------HHh--ccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPG------THGSTY-GGNPLACKLAMTALDV------ILE--ENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~~~a~a~l~~------~~~--~~~~~~~~~~~~~l~  155 (242)
                      |+ .| +|+||+.+.....+.....      ....++ +.+..++.++...+..      ++.  +.+.++++++++.+.
T Consensus       267 ~~~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~  345 (420)
T 4h51_A          267 MGLYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVY  345 (420)
T ss_dssp             SCCGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 88 9999988754333222110      111222 2334444444333331      111  235667778888888


Q ss_pred             HHHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         156 SELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       156 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      +.| +.++..  +....+..|+|.++-+.      .+.++.|.++||++.+.+    ||++.. .+++.|+++.++|.++
T Consensus       346 ~~L-~~~g~~~~~~~i~~q~GmF~~~gls------~e~v~~L~e~~Vy~~~~g----Ris~Ag-l~~~ni~~~a~aI~~v  413 (420)
T 4h51_A          346 DEL-LRLQTPGSWEHVINQIGMFSFLGLS------KAQCEYCQNHNIFITVSG----RANMAG-LTHETALMLAQTINDA  413 (420)
T ss_dssp             HHH-HHTTCSSCCTHHHHCCSSEEECCCC------HHHHHHHHHTTEECCTTC----EEEGGG-CCHHHHHHHHHHHHHH
T ss_pred             HHH-HHhCCCCCCCeecCCCceEEecCcC------HHHHHHHHhCCEEEcCCC----EEEecc-CCHHHHHHHHHHHHHH
Confidence            888 665532  21123445777665432      234578889999988864    888543 4889999999999999


Q ss_pred             HHHHhhh
Q psy6548         234 INTMAAK  240 (242)
Q Consensus       234 l~~~~~~  240 (242)
                      ++++.++
T Consensus       414 vr~i~re  420 (420)
T 4h51_A          414 VRNVNRE  420 (420)
T ss_dssp             HC-----
T ss_pred             HHHhhcC
Confidence            9887653

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.76  E-value=3.6e-17  Score=138.01  Aligned_cols=207  Identities=13%  Similarity=0.197  Sum_probs=135.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+.++++|+++   +++|...+    +++|+++|++||+++|+||+|+. ....+.     ..+..+|+.++
T Consensus       133 d~~~l~~~~~~~~~~v~~~---n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~  200 (391)
T 3dr4_A          133 DAAKLEALITPRTKAIMPV---HLYGQICD----MDPILEVARRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATF  200 (391)
T ss_dssp             CGGGSGGGCCTTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEE
T ss_pred             CHHHHHHhcCCCceEEEEE---CCCCChhh----HHHHHHHHHHcCCEEEEECcccccceECCe-----eecccCCEEEE
Confidence            5666 44445688888843   46776554    99999999999999999999962 211111     12333577776


Q ss_pred             e----ccccCCccchheeEeC-hhhhhccCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Q psy6548          89 G----KALSGGLYPISAVLAD-DEVMGTLVPG--------------THGSTYGGNPLACKLAMTALDVILEENMIENAYK  149 (242)
Q Consensus        89 s----K~~~~g~~~~g~~~~~-~~~~~~l~~~--------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~  149 (242)
                      |    |++++|  +.|+++.+ +++++.+...              ..+.++..+++..+++...++.+  +++.++.++
T Consensus       201 S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~  276 (391)
T 3dr4_A          201 SFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARER  276 (391)
T ss_dssp             ECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHH
T ss_pred             ECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            6    999875  36777665 4455444321              11222444555554444333322  346778888


Q ss_pred             HHHHHHHHHHhhcCCCCCCe-----EeeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCC-----------------
Q psy6548         150 MGEIFRSELRSRLSPDIVPV-----VRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPIS-----------------  206 (242)
Q Consensus       150 ~~~~l~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~-----------------  206 (242)
                      +.+++++.| +.++-.....     ......++++.++.. +.+.+++.++|.++||.+++..                 
T Consensus       277 ~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~  355 (391)
T 3dr4_A          277 VVGWYEQKL-ARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDL  355 (391)
T ss_dssp             HHHHHHHHH-GGGTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTC
T ss_pred             HHHHHHHHh-hcCCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCC
Confidence            899999999 6653211111     122334567777651 1568899999999999998652                 


Q ss_pred             -------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         207 -------NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       207 -------~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                             ...+|++++..+|+||++++++.|++++
T Consensus       356 ~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          356 KIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                   3579999999999999999999997653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.76  E-value=8.6e-19  Score=147.48  Aligned_cols=219  Identities=15%  Similarity=0.155  Sum_probs=136.3

Q ss_pred             CChhh-hcCCCCCEEE-EEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc--cCcccccccCCCCCCE
Q psy6548          10 KQVPA-KLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR--TGKLLAIHYEDVRPDI   85 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~-i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~   85 (242)
                      +|+++ +.. ++++++ |++++++|++|.   +...+++|.++|++||+++|+||+|..+..  .......   ...+|+
T Consensus       129 ~d~~~l~~~-~~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~---~~~~di  201 (374)
T 2aeu_A          129 DKVGEILNK-IDKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPAL---KLGADL  201 (374)
T ss_dssp             SCHHHHHTT-CCTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHH---HHTCSE
T ss_pred             CCHHHHHhc-CCCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcc---ccCCcE
Confidence            57777 545 678899 999999999984   446799999999999999999999864421  1110011   123566


Q ss_pred             EE--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHHHH
Q psy6548          86 VI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF----RSELR  159 (242)
Q Consensus        86 ~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l----~~~l~  159 (242)
                      ++  +||+++ | +++||+++++++++.+.........+.+++.+.++.++++.+..+ ..+...++++.+    ++.|+
T Consensus       202 ~~~S~sK~l~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~  278 (374)
T 2aeu_A          202 VVTSTDKLME-G-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLN  278 (374)
T ss_dssp             EEEETTSSSS-S-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEecCccccc-C-cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            65  789976 4 789999999998887765322233356788888888888764221 223333334344    45553


Q ss_pred             hhcCC-----CCCCeEeeeceeEEE-EecCCch---hHHHHHHHH-HHCCceeccC-----CCCEEEEeccC-cCCHHHH
Q psy6548         160 SRLSP-----DIVPVVRGKGLLNAI-VLDKSIL---EVYDVCIKM-KDAGLVTKPI-----SNNIIRLSPAL-NITEQEL  223 (242)
Q Consensus       160 ~~l~~-----~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~l-~~~gi~~~~~-----~~~~lR~~~~~-~~t~e~i  223 (242)
                      +.++.     ++.....+.|++++. ..... .   +..+++..+ .++||.+.|+     +.+++|++++. ..+++++
T Consensus       279 ~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l  357 (374)
T 2aeu_A          279 KELKAIDDNINIVYERTPTGFVIKRVYKDDT-INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDD  357 (374)
T ss_dssp             HHHTTTCTTEEEEEEECSSEEEEEEEESSHH-HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCH
T ss_pred             HhhhhhhhccCcceeeCCceEEEEeeccccc-ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHH
Confidence            33332     111122334444333 33211 1   112355444 4689999875     24589999653 2233348


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy6548         224 REGLDIIINTINTMAA  239 (242)
Q Consensus       224 ~~~~~~l~~~l~~~~~  239 (242)
                      +++.+.|+++++++.+
T Consensus       358 ~~l~~~l~~~l~~~~~  373 (374)
T 2aeu_A          358 NYIIKAIVESIKMAFK  373 (374)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999998888754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.76  E-value=2e-17  Score=138.70  Aligned_cols=208  Identities=13%  Similarity=0.102  Sum_probs=132.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+.++++|+   +++++|...+    +++|.++|++||+++|+||+|+.. ..   +.....+...|++++|
T Consensus       113 d~~~l~~~l~~~~~~v~---~~n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~~g-~~---~~~~~~~~~~d~~~~S  181 (373)
T 3frk_A          113 DPSLIESAITEKTKAII---AVHLYGQPAD----MDEIKRIAKKYNLKLIEDAAQAHG-SL---YKGMKVGSLGDAAGFS  181 (373)
T ss_dssp             CGGGTGGGCCTTEEEEE---EECCTTCCCC----HHHHHHHHHHHTCEEEEECTTCTT-CE---ETTEETTSSSSEEEEE
T ss_pred             CHHHHHHhcCCCCeEEE---EECCCcCccc----HHHHHHHHHHcCCEEEEECCcccC-CE---ECCEeccccccEEEEe
Confidence            6776 444455888888   4567886554    999999999999999999999621 11   1112334446888877


Q ss_pred             ----ccccC-CccchheeEeC-hhhhhccCCC------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548          90 ----KALSG-GLYPISAVLAD-DEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG  151 (242)
Q Consensus        90 ----K~~~~-g~~~~g~~~~~-~~~~~~l~~~------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~  151 (242)
                          |++++ | . .|+++++ +++++.+.+.            ..+.++..+++..+.+...++.+  +++.++.+++.
T Consensus       182 ~~~~K~l~~~g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~  257 (373)
T 3frk_A          182 FYPAKNLGSLG-D-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIA  257 (373)
T ss_dssp             CCTTSSSCCSS-S-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHH
T ss_pred             CcCCCccCccc-e-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence                99987 6 3 6777765 4455444321            12334445666655554444322  34567777778


Q ss_pred             HHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------------------
Q psy6548         152 EIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------------------  206 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------------------  206 (242)
                      +++++.| +.++-....... ....++.+.+..  .+.+++.+.|.++||.+++..                        
T Consensus       258 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (373)
T 3frk_A          258 QKYIAGI-NNPNVIIPVEADYAKHVWYTFVIRS--EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAE  334 (373)
T ss_dssp             HHHHHHC-CCTTEECCCCCTTEECCCSSEEEEE--SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHH
T ss_pred             HHHHHHh-ccCceEeccCCCCCceeeEEEEEEe--CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHH
Confidence            8887777 554311111111 111222222222  247889999999999997432                        


Q ss_pred             ---CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 ---NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                         .+.+|++++..+|++|++++++.|+++..+
T Consensus       335 ~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          335 KIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             HHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence               168999999999999999999999876554

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.76  E-value=1.5e-17  Score=140.34  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=139.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+.++++|++++   ++|...+    +++|.++|++||+++|+||+|+. +...+..     ++. .|++++
T Consensus       116 d~~~l~~~l~~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~  182 (393)
T 1mdo_A          116 TPEHIEAAITPQTKAIIPVH---YAGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIF  182 (393)
T ss_dssp             CHHHHHHHCCTTEEEECCBC---GGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEE
T ss_pred             CHHHHHHhcCCCceEEEEeC---CCCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEE
Confidence            5666 333345789988876   4665543    99999999999999999999973 3222221     222 688775


Q ss_pred             e----ccccCCccchheeEeC-hhhhhccCCCCC------------------------CCCCCCCHHHHHHHHHHHHHHH
Q psy6548          89 G----KALSGGLYPISAVLAD-DEVMGTLVPGTH------------------------GSTYGGNPLACKLAMTALDVIL  139 (242)
Q Consensus        89 s----K~~~~g~~~~g~~~~~-~~~~~~l~~~~~------------------------~~~~~~~~~~~~~a~a~l~~~~  139 (242)
                      |    |++++|  ++|+++.+ +++++.+.+...                        +.++..+++..+.+.+.++.+ 
T Consensus       183 S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-  259 (393)
T 1mdo_A          183 SFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL-  259 (393)
T ss_dssp             ECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH-
T ss_pred             eCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH-
Confidence            5    888765  58898886 677665542111                        111234566655555555433 


Q ss_pred             hccHHHHHHHHHHHHHHHHHhhcCCCCC--C--eEeeeceeEEEEecC---CchhHHHHHHHHHHCCceeccCC------
Q psy6548         140 EENMIENAYKMGEIFRSELRSRLSPDIV--P--VVRGKGLLNAIVLDK---SILEVYDVCIKMKDAGLVTKPIS------  206 (242)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~--~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~~~------  206 (242)
                       ++..++.+++++++++.| +.++-...  .  .....++++++.++.   . .+..++.+.|.++||.++++.      
T Consensus       260 -~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~~~  336 (393)
T 1mdo_A          260 -DALNARRAAIAAQYHQAM-ADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG-ITRDALMASLKTKGIGTGLHFRAAHTQ  336 (393)
T ss_dssp             -HHHHHHHHHHHHHHHHHH-HTSSCEECCCCSSCEECCCSCEEEECCHHHHS-SCHHHHHHHHHHTTBCCBCCCCCGGGS
T ss_pred             -HHHHHHHHHHHHHHHHHH-hcCCcccccCCCCCCCceeEEEEEEecccccc-cCHHHHHHHHHhCCCCcccccCccccC
Confidence             345667777888888888 66541111  1  123445678888873   2 367889999999999997642      


Q ss_pred             -------------------CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         207 -------------------NNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       207 -------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                         ...+|++++...|++|++++++.|+++++..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          337 KYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             HHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             hhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence                               2379999888899999999999999887653

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.76  E-value=1.9e-17  Score=140.99  Aligned_cols=210  Identities=14%  Similarity=0.103  Sum_probs=137.7

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+ +++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|++++....+     ....
T Consensus       123 ~~~~~~~-~~~l~~~i~~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~  192 (412)
T 2cb1_A          123 VRYVDPE-PEAVREALSAKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALCRP-----LAWG  192 (412)
T ss_dssp             EEEECSS-HHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSCCG-----GGGT
T ss_pred             EEEECCC-HHHHHHHhccCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccCCc-----cccC
Confidence            3445554 666 4444568999999999999998775    999999999999999999999754211111     1234


Q ss_pred             CCEEE--eecccc-CCccchheeEeCh-h---------------------------hhhccCCCC-CCCCCCCCHHHHHH
Q psy6548          83 PDIVI--LGKALS-GGLYPISAVLADD-E---------------------------VMGTLVPGT-HGSTYGGNPLACKL  130 (242)
Q Consensus        83 ~~~~~--~sK~~~-~g~~~~g~~~~~~-~---------------------------~~~~l~~~~-~~~~~~~~~~~~~~  130 (242)
                      +|+++  ++|+++ +| .++|+++..+ +                           +.+.++... .......++...+.
T Consensus       193 ~di~~~S~~K~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~  271 (412)
T 2cb1_A          193 AHVVVESLTKWASGHG-SVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYL  271 (412)
T ss_dssp             CSEEEEETTTTTTCSS-CCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHH
T ss_pred             CeEEEECCcccccCCC-CcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHH
Confidence            67777  779998 45 7788877543 2                           222222211 11122345655555


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCC-C--CeE-------------eeeceeEEEEecCCchhHHHHHHH
Q psy6548         131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDI-V--PVV-------------RGKGLLNAIVLDKSILEVYDVCIK  194 (242)
Q Consensus       131 a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  194 (242)
                      ++..++.+  +...++..++.+++.+.| ++.+... .  ...             .+.+.++.+.+ .   +.+.+.+.
T Consensus       272 ~~~~l~~l--~~~~~~~~~~~~~l~~~L-~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~---~~~~~~~~  344 (412)
T 2cb1_A          272 LFQGLETV--ALRVARMSETARFLAERL-QGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G---DLERASRF  344 (412)
T ss_dssp             HHHHGGGH--HHHHHHHHHHHHHHHHHH-HTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S---SHHHHHHH
T ss_pred             HHcCCchH--HHHHHHHHHHHHHHHHHH-HcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C---CHHHHHHH
Confidence            55444433  223455667888888888 5543211 1  000             24567888888 4   35667777


Q ss_pred             HHHCCceeccC------------------------------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         195 MKDAGLVTKPI------------------------------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       195 l~~~gi~~~~~------------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      |.+.||.+ .+                              ..+.+|++++..+++++++.+.+.|++
T Consensus       345 l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          345 LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             HHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             HHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            77889886 32                              057899999999999999999988864

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.76  E-value=3.2e-18  Score=145.38  Aligned_cols=214  Identities=16%  Similarity=0.165  Sum_probs=139.1

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC-CEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~-~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++|| +++|+||+|.++.. ..+.     +.
T Consensus       133 v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~-~~~~-----~~  202 (403)
T 3cog_A          133 ISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF-QRPL-----AL  202 (403)
T ss_dssp             EEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT-CCTT-----TT
T ss_pred             EEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc-CCcc-----cc
Confidence            55678888888 5544568999999999999998775    999999999999 99999999975421 1111     23


Q ss_pred             CCCEEE--eeccccC-CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        82 ~~~~~~--~sK~~~~-g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      ..|+++  ++|++++ |-.++|+++++ +++++.+.+....+....+++.+.++..+++.+..  ..+...++...+.+.
T Consensus       203 ~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--r~~~~~~n~~~l~~~  280 (403)
T 3cog_A          203 GADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHV--RMEKHFKNGMAVAQF  280 (403)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHH
Confidence            567775  7899994 21468999985 77777776533333445677777666666654321  234445555566666


Q ss_pred             HHhhcC-------CCCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---C-------------
Q psy6548         158 LRSRLS-------PDIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---I-------------  205 (242)
Q Consensus       158 l~~~l~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~-------------  205 (242)
                      + +..+       .....         ...+.|.++.+.++..   .+...+.+.+.|+.+..   +             
T Consensus       281 l-~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~  356 (403)
T 3cog_A          281 L-ESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT---LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMT  356 (403)
T ss_dssp             H-HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC---HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTT
T ss_pred             H-hcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC---HHHHHHHHHhCCcceEccCCCCcceeeecccccc
Confidence            6 3321       11100         0113467777887653   24555666677774321   1             


Q ss_pred             --------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 --------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 --------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                    .++.+|++++...++++++.+.+.|+++
T Consensus       357 ~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          357 HASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             TTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence                          1578999988877766666666666543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.76  E-value=4.2e-18  Score=144.22  Aligned_cols=215  Identities=12%  Similarity=0.055  Sum_probs=140.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh----CCEEEEeccccccCccCccccccc
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY----NVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~----~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      +..+|.+| ++ +...++++++|++++++|++|.+.+    +++|+++|++|    |+++|+||+|+++.. ....    
T Consensus       121 v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~----  190 (393)
T 1n8p_A          121 TSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPL----  190 (393)
T ss_dssp             CEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGG----
T ss_pred             EEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHH----
Confidence            45667777 66 4444568999999999999998775    99999999999    999999999975432 1211    


Q ss_pred             CCCCCCEEE--eecccc-CCccch-heeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          79 EDVRPDIVI--LGKALS-GGLYPI-SAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        79 ~~~~~~~~~--~sK~~~-~g~~~~-g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                       ....|+++  ++|.++ +| +|+ |+++++ +++++.+...........++..+.++..+++.+.  ...+...++...
T Consensus       191 -~~~~di~~~S~sK~~g~~G-~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~  266 (393)
T 1n8p_A          191 -NFGADIVVHSATKYINGHS-DVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANK  266 (393)
T ss_dssp             -GGTCSEEEEETTTTTTCSS-CCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHH
T ss_pred             -HcCCeEEEEECcccccCCC-CceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHH
Confidence             12357765  779999 57 788 888884 7787777643221122345666555555554332  233445566677


Q ss_pred             HHHHHHhhcCC--------CCCCe---------Eee-e-ceeEEEEecCCchhHHHHHHHHHHCCceeccC---------
Q psy6548         154 FRSELRSRLSP--------DIVPV---------VRG-K-GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------  205 (242)
Q Consensus       154 l~~~l~~~l~~--------~~~~~---------~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------  205 (242)
                      +.+.| +..+.        .....         ..+ . +.+++|.++....+.+.+.+.|...++.++.+         
T Consensus       267 l~~~L-~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p  345 (393)
T 1n8p_A          267 IAEFL-AADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVP  345 (393)
T ss_dssp             HHHHH-TSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECT
T ss_pred             HHHHH-HhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeecc
Confidence            77777 44321        00000         012 4 67899999753245666777665444333110         


Q ss_pred             ------------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         206 ------------------SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       206 ------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                                        ..+.+|+++....++++++.+.+.|+++
T Consensus       346 ~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          346 AVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             TTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                              1478999999999999999998888764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.76  E-value=4.5e-17  Score=136.01  Aligned_cols=200  Identities=11%  Similarity=0.033  Sum_probs=141.1

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGG   95 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g   95 (242)
                      .++++++|++.+++|++|....+   ++++      ||+++++||+|+.+ ..  ...+..  .  |+++  ++|+++ .
T Consensus       139 i~~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~~~-~~--~~~~~~--~--d~~~~s~~K~~g-~  201 (362)
T 2c0r_A          139 LQDNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSDIL-SR--PFDLNQ--F--GLVYAGAQKNLG-P  201 (362)
T ss_dssp             CCTTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTTTT-SS--CCCGGG--C--SEEEEETTTTTC-C
T ss_pred             cCCCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhhcc-CC--ccchhH--C--cEEEEecccccc-C
Confidence            46689999999999999976432   4444      89999999999632 11  111111  2  6655  679997 2


Q ss_pred             ccchheeEeChhhhhccCCCC------------CCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVPGT------------HGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~  159 (242)
                       .++||+++++++++.+.+..            ....++.+..++.++.++++.+.+    +...++.+++++++++.| 
T Consensus       202 -~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L-  279 (362)
T 2c0r_A          202 -SGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAI-  279 (362)
T ss_dssp             -SSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             -cCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-
Confidence             34799999998887776421            012345677788888888887654    346788888889999999 


Q ss_pred             hhcC-C-CCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         160 SRLS-P-DIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       160 ~~l~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++++ - ...... ...+.++++.++.. .+..++.+.|.++||.+.++.  .+.+|++++..+++|+++++++.|++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  358 (362)
T 2c0r_A          280 DQSGGFYRGCVDVDSRSDMNITFRLASE-ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFK  358 (362)
T ss_dssp             HTSTTSSEESSCGGGBCSSEEEEECSCH-HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHcCCccccCCChHHcCCcEEEEEcCCc-chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            6664 1 111111 12345677777653 567889999999999887652  4579999888889999999999999887


Q ss_pred             HHH
Q psy6548         235 NTM  237 (242)
Q Consensus       235 ~~~  237 (242)
                      ++.
T Consensus       359 ~~~  361 (362)
T 2c0r_A          359 RSR  361 (362)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.75  E-value=3.4e-17  Score=142.60  Aligned_cols=227  Identities=9%  Similarity=0.019  Sum_probs=145.0

Q ss_pred             cccccCCC-----Chhh--hcCCCC-----CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc
Q psy6548           3 LQFPVKSK-----QVPA--KLKSNP-----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   70 (242)
Q Consensus         3 ~~~~~~~~-----d~~~--~~~~~~-----~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~   70 (242)
                      .++.+|.+     |+++  +.+.++     .+.+|+++.+++++|.+.+    +++|+++|++||+++++|++|.++...
T Consensus       228 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~  303 (497)
T 2qma_A          228 AVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALIL  303 (497)
T ss_dssp             GEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence            45667776     6666  333321     2557888888888897655    999999999999999999999865433


Q ss_pred             CcccccccCCC-CCCEEEe--eccccCCccchheeEeCh-hhhhccCCCC--C--CCCCCCCHHH----------HHHHH
Q psy6548          71 GKLLAIHYEDV-RPDIVIL--GKALSGGLYPISAVLADD-EVMGTLVPGT--H--GSTYGGNPLA----------CKLAM  132 (242)
Q Consensus        71 g~~~~~~~~~~-~~~~~~~--sK~~~~g~~~~g~~~~~~-~~~~~l~~~~--~--~~~~~~~~~~----------~~~a~  132 (242)
                      .. +.....++ .+|++++  +|+++++ +++|+++.++ ..++.+....  .  ..+...++..          ....+
T Consensus       304 ~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~  381 (497)
T 2qma_A          304 SS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVF  381 (497)
T ss_dssp             ST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHH
T ss_pred             Cc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHH
Confidence            32 22122344 6788775  7999988 7999988764 3444443210  0  0000011111          11223


Q ss_pred             HHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHHHHCCceecc-
Q psy6548         133 TALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKP-  204 (242)
Q Consensus       133 a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~-  204 (242)
                      ++++.+..   +++.++..++++++++.| ++++. +....+..+.++++.+....    ....++.+.|.++|+.+.+ 
T Consensus       382 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L-~~~~~-~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~  459 (497)
T 2qma_A          382 MTMQNVGPKALGDMYDHLLAQTLEVADMI-RTNDQ-FELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGE  459 (497)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHH-HTCTT-EEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEE
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHH-hhCCC-eEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEe
Confidence            44554322   245677888899999999 66532 11101233457777775531    1235678889999998864 


Q ss_pred             ---CCCCEEEEec-cCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 ---ISNNIIRLSP-ALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 ---~~~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                         .+.+++|+++ +..+|+++++++++.|+++++++
T Consensus       460 ~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          460 TIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             EEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             eEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence               2456899997 88899999999999999988764

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.75  E-value=5.1e-18  Score=145.95  Aligned_cols=215  Identities=14%  Similarity=0.109  Sum_probs=136.9

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+.+.++++++++.+.++++.      ++++|+++|++||+++|+||+| .|+...|....  ... ..|++
T Consensus       172 ~d~~~l~~~i~~~~~~~i~~~~~~~~~~~------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~~~-~~di~  242 (447)
T 3h7f_A          172 IDMDAVRATALEFRPKVIIAGWSAYPRVL------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--PVP-HADVV  242 (447)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEECSSCCSCC------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--STT-TCSEE
T ss_pred             cCHHHHHHHHHhcCCeEEEEcCCCCCCcc------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--CCC-CCcEE
Confidence            45666  3343445677777544444432      3999999999999999999997 54433332111  111 23666


Q ss_pred             E--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHh
Q psy6548          87 I--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN-PLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +  +||+++ | ++.|++++++++++.+.+....++++.+ ...++++.+++.....   +++.+++.++++++++.| +
T Consensus       243 ~~s~sK~l~-G-~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L-~  319 (447)
T 3h7f_A          243 STTVHKTLG-G-GRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRL-M  319 (447)
T ss_dssp             EEESSGGGC-C-CSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             EecCCcCCC-C-CCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-H
Confidence            5  789996 5 6789999998887776543333333333 3334444445554322   346777888889999988 5


Q ss_pred             hc-----CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC------CCCEEEEeccCc----CCHH
Q psy6548         161 RL-----SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPALN----ITEQ  221 (242)
Q Consensus       161 ~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~lR~~~~~~----~t~e  221 (242)
                      +.     +-.... ....++++++++...+.+...+.+.|.++||.+.    +.      .++.+|++++..    .+++
T Consensus       320 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~e  398 (447)
T 3h7f_A          320 APDVAKAGVSVVS-GGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDT  398 (447)
T ss_dssp             SHHHHHTTCEEGG-GSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHH
T ss_pred             hccccCCCeEEec-CCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHH
Confidence            54     311111 1124567778776543356677777878899988    33      356799986554    6799


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      +++++++.|++++++.
T Consensus       399 ei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          399 EFTEVADIIATALATG  414 (447)
T ss_dssp             HHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999988754

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.75  E-value=1.9e-17  Score=140.68  Aligned_cols=215  Identities=13%  Similarity=0.127  Sum_probs=139.9

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .|+++  +.+.++++++|++.++++  |...+    +++|+++|++||+++|+||+| .|+...+....  ... ..|++
T Consensus       151 ~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~  221 (417)
T 3n0l_A          151 IDYEKVREIAKKEKPKLIVCGASAY--ARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVV  221 (417)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEE
T ss_pred             cCHHHHHHHHHhcCCeEEEECCccc--CccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEE
Confidence            35666  334435788888766553  65554    999999999999999999997 33322221110  011 34777


Q ss_pred             Eee--ccccCCccchheeEeC-hhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Q psy6548          87 ILG--KALSGGLYPISAVLAD-DEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 ~~s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~  159 (242)
                      ++|  |+|+ | .++||++++ +++++.+.+... +.+.+.++..++++.+++.....   +++.++++++++++.+.| 
T Consensus       222 ~~s~sK~l~-g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L-  298 (417)
T 3n0l_A          222 SSTTHKTLR-G-PRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVL-  298 (417)
T ss_dssp             EEESSTTTC-S-CSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EeeCccccC-C-CCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            755  9994 4 568999988 678777654322 22223445555555555554322   356677888888999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccC----cCCHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NITEQELRE  225 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~----~~t~e~i~~  225 (242)
                      +..+-.... ....+.++++.+...+.+...+.+.|.++||.+.+.          ..+.+|++++.    ..+++++++
T Consensus       299 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~  377 (417)
T 3n0l_A          299 MDRKFKLVS-DGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEI  377 (417)
T ss_dssp             HHTTCEEGG-GSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             HhCCceecc-CCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHH
Confidence            554311111 113356778887654346788889999999998742          23679998653    257899999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         226 GLDIIINTINTM  237 (242)
Q Consensus       226 ~~~~l~~~l~~~  237 (242)
                      ++++|++++++.
T Consensus       378 ~~~~l~~~l~~~  389 (417)
T 3n0l_A          378 VSNYIADILDDV  389 (417)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999998753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.75  E-value=2.8e-17  Score=138.54  Aligned_cols=211  Identities=15%  Similarity=0.128  Sum_probs=136.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...++++++|+   ++|++|.+.+    +++|.++|++||+++|+||+|+. ....+..  ...++ ..++.+|
T Consensus       115 d~~~l~~~i~~~~~~v~---~~n~tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~  184 (388)
T 1b9h_A          115 DPEAVAAAVTPRTKVIM---PVHMAGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSF  184 (388)
T ss_dssp             CHHHHHHHCCTTEEEEC---CBCGGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEEC
T ss_pred             CHHHHHHhcCcCceEEE---EeCCccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEc
Confidence            5566 443355788877   5566786654    89999999999999999999963 3222221  22222 2334446


Q ss_pred             e--ccccCCccchheeEeChh-h--hhccCC---C------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Q psy6548          89 G--KALSGGLYPISAVLADDE-V--MGTLVP---G------------THGSTYGGNPLACKLAMTALDVILEENMIENAY  148 (242)
Q Consensus        89 s--K~~~~g~~~~g~~~~~~~-~--~~~l~~---~------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~  148 (242)
                      |  |+++||  ++|+++++++ +  ++.+..   .            ..+.++..+++.++++.+.++.++  +..++.+
T Consensus       185 s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~  260 (388)
T 1b9h_A          185 QNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRD  260 (388)
T ss_dssp             CTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHH
T ss_pred             cCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHH
Confidence            6  666654  6899988765 5  444421   0            001222345555554444444332  3567778


Q ss_pred             HHHHHHHHHHHhhcCCCCCCe-----EeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCC---------------
Q psy6548         149 KMGEIFRSELRSRLSPDIVPV-----VRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISN---------------  207 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~---------------  207 (242)
                      ++++++.+.| +.++......     .+..++++++.++... .+.+++.++|.++||.++++..               
T Consensus       261 ~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~  339 (388)
T 1b9h_A          261 ERWTLLSRLL-GAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPD  339 (388)
T ss_dssp             HHHHHHHHHH-HTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCS
T ss_pred             HHHHHHHHHh-ccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCc
Confidence            8889999999 6663211111     1234678889887531 2578899999999999975311               


Q ss_pred             ------------------CEEEEeccCcC-CHHHHHHHHHHHHHHHHH
Q psy6548         208 ------------------NIIRLSPALNI-TEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ------------------~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~  236 (242)
                                        +.+|++++..+ |++|++++++.|++++++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          340 ESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             SCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                              25999998899 999999999999988764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.75  E-value=1.8e-17  Score=140.13  Aligned_cols=211  Identities=14%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..+|.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+||+|.++. .+.+.     +..
T Consensus       126 ~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~~-~~~~~-----~~~  195 (389)
T 3acz_A          126 VDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSPC-FLKPL-----ELG  195 (389)
T ss_dssp             EEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCTT-TCCGG-----GTT
T ss_pred             EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcccc-ccCcc-----ccC
Confidence            45678888888 5555668999999999999998775    9999999999999999999997532 11221     235


Q ss_pred             CCEEE--eeccccCCccch-heeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGGLYPI-SAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        83 ~~~~~--~sK~~~~g~~~~-g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      +|+++  ++|+++++..|+ |++++++ ++++.+.+.........++..+.++.+.++.+.  ...+...++...+.+.|
T Consensus       196 ~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l  273 (389)
T 3acz_A          196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFL  273 (389)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHH
Confidence            67775  789999432777 9999998 888777653221223456666666565555332  22345556667777777


Q ss_pred             HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------
Q psy6548         159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------  205 (242)
Q Consensus       159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------  205 (242)
                       +..+.       ....         ...+.+.++.+.+..    .++..+.+.+.|+.+...                 
T Consensus       274 -~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~  348 (389)
T 3acz_A          274 -EQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH  348 (389)
T ss_dssp             -HHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTT
T ss_pred             -HcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC----HHHHHHHHHhCCCcEECcCCCCcccEeeCCccccc
Confidence             44321       1100         012346788888754    344556666677766441                 


Q ss_pred             -------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 -------------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 -------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                   .++.+|++++..    +.+++++.|.++++
T Consensus       349 ~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~  387 (389)
T 3acz_A          349 AAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE  387 (389)
T ss_dssp             SSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence                         147999997665    44555555555543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.75  E-value=9.8e-18  Score=141.95  Aligned_cols=201  Identities=9%  Similarity=0.072  Sum_probs=139.3

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~   96 (242)
                      ++++++|++++++|++|.+.+.    +++.++   ||+++|+||+|+.+..   .....    ..|+++  ++|+++++ 
T Consensus       163 ~~~~~~v~~~~~~nptG~~~~~----~~i~~~---~~~~vivD~a~~~~~~---~~~~~----~~di~~~s~sK~~~~~-  227 (398)
T 2fyf_A          163 DPSVDVIAWAHNETSTGVAVAV----RRPEGS---DDALVVIDATSGAGGL---PVDIA----ETDAYYFAPQKNFASD-  227 (398)
T ss_dssp             CTTCSEEEEESEETTTTEECCC----CCCTTC---C-CEEEEECTTTTTTS---CCCGG----GCSEEEECTTSTTCSC-
T ss_pred             cCCCCEEEEeCcCCCcceecch----HHhhhh---cCCeEEEEeccccCCc---ccCcc----cCcEEEEecCcccCCC-
Confidence            5678999999999999977763    333343   8999999999974321   11111    257776  55999954 


Q ss_pred             cchheeEeChhhhhccCC----------CC----------CCCC-CCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHH
Q psy6548          97 YPISAVLADDEVMGTLVP----------GT----------HGST-YGGNPLACKLAMTALDVILE----ENMIENAYKMG  151 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~----------~~----------~~~~-~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~  151 (242)
                      -++|++++++++++.+.+          ..          .+.+ .+.+..++.++.++++.+.+    +++.++.++++
T Consensus       228 gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          228 GGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             SSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             CceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            358999999888776521          00          0122 23456666677777776543    24567888889


Q ss_pred             HHHHHHHHhhcCC-CCCC-eEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHH
Q psy6548         152 EIFRSELRSRLSP-DIVP-VVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELR  224 (242)
Q Consensus       152 ~~l~~~l~~~l~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~  224 (242)
                      +++.+.| +.++. .... .+. ..+.++++.++.. .+..++.+.|.++||.++++    +.+.+|++++..++++|++
T Consensus       308 ~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~  385 (398)
T 2fyf_A          308 QRLYSWA-QERPYTTPFVTDPGLRSQVVGTIDFVDD-VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVS  385 (398)
T ss_dssp             HHHHHHH-HHSTTEEESCCSGGGBCSSEEEEEECTT-SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHH
T ss_pred             HHHHHHH-HHcCCceeccCChhhcCCcEEEEECCCC-CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHH
Confidence            9999999 66632 1111 111 1334888888653 56789999999999999864    2578999998888999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINT  236 (242)
Q Consensus       225 ~~~~~l~~~l~~  236 (242)
                      +++++|++++++
T Consensus       386 ~~~~~l~~~l~~  397 (398)
T 2fyf_A          386 ALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.74  E-value=2.2e-17  Score=142.37  Aligned_cols=210  Identities=12%  Similarity=0.093  Sum_probs=138.0

Q ss_pred             Chhh--hcC-C---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc-CCCCC
Q psy6548          11 QVPA--KLK-S---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY-EDVRP   83 (242)
Q Consensus        11 d~~~--~~~-~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~-~~~~~   83 (242)
                      |+++  +.+ .   +.++.+|++..+++++|.+.+    +++|.++|++||+++++||+|.++.....+..... .+ .+
T Consensus       215 d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~-~~  289 (456)
T 2z67_A          215 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY-RV  289 (456)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS-CC
T ss_pred             CHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC-CC
Confidence            5666  444 2   247888888888888997765    99999999999999999999975422111111111 12 56


Q ss_pred             CEEEe--eccccCCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Q psy6548          84 DIVIL--GKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        84 ~~~~~--sK~~~~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~  157 (242)
                      |++++  +|+++++ +++|++++ ++++++.+.+...+... .++  ..++.+++..+..   +++.++.+++++++++.
T Consensus       290 D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~~~g~~~-~~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~  365 (456)
T 2z67_A          290 DAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRAS-ATP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  365 (456)
T ss_dssp             SEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBC-SHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcCCCCCCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77775  5988888 89999998 57777777554333321 111  2233444443332   34678888999999999


Q ss_pred             HHhhcC---CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCc---eec------------cCCCCEEEEeccCcCC
Q psy6548         158 LRSRLS---PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL---VTK------------PISNNIIRLSPALNIT  219 (242)
Q Consensus       158 l~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi---~~~------------~~~~~~lR~~~~~~~t  219 (242)
                      | ++++   ......++   .++++.+..+ ....++.+.|.++|+   -+.            ....+++|++++..+|
T Consensus       366 L-~~~~~~~g~~v~~~~---~~v~~~~~~~-~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t  440 (456)
T 2z67_A          366 L-NDLSKKTGGKFLDVE---SPIASCISVN-SDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVR  440 (456)
T ss_dssp             H-HHHHHHSSCCBCCCC---CSSEEEEECS-SCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCC
T ss_pred             H-HhcccccCCEecCCC---CeEEEEEecc-cHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCC
Confidence            9 6662   11122222   4556666322 124678999999985   232            2235789999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTI  234 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l  234 (242)
                      ++++++++++|++++
T Consensus       441 ~eeid~~l~~L~~~~  455 (456)
T 2z67_A          441 TEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998754

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.74  E-value=1.2e-16  Score=136.45  Aligned_cols=210  Identities=15%  Similarity=0.189  Sum_probs=133.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      |+++ +...+.++++|++.+   ++|...    .+++|+++|++||+++|+||+|+ |+...+..     .+..+|+++ 
T Consensus       127 d~~~l~~~i~~~~~~v~~~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~  194 (424)
T 2po3_A          127 DPDQVAAAVTPRTSAVVGVH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVF  194 (424)
T ss_dssp             CHHHHGGGCCTTEEEEEEEC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEE
T ss_pred             CHHHHHHhhCcCCcEEEEEC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEE
Confidence            5565 444445788888754   466543    39999999999999999999997 55433322     122246666 


Q ss_pred             -ee--ccccCCccchheeEeC-hhhhhccCCCCC------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548          88 -LG--KALSGGLYPISAVLAD-DEVMGTLVPGTH------------GSTYGGNPLACKLAMTALDVILEENMIENAYKMG  151 (242)
Q Consensus        88 -~s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~~------------~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~  151 (242)
                       ||  |++++  .++||++++ +++++.+.+...            +.++..+++..++++..++.+  +++.++.++++
T Consensus       195 S~sk~K~l~~--~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~  270 (424)
T 2po3_A          195 SFHATKAVNA--FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNH  270 (424)
T ss_dssp             ECCTTSSSCC--SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eCCCCCCccC--CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence             44  66655  589999998 777766543111            112233455555444433332  23566677777


Q ss_pred             HHHHHHHHhhcCC-CCCCeEee-e--ceeEEEEecCC--chhHHHHHHHHHHCCceeccCCC------------------
Q psy6548         152 EIFRSELRSRLSP-DIVPVVRG-K--GLLNAIVLDKS--ILEVYDVCIKMKDAGLVTKPISN------------------  207 (242)
Q Consensus       152 ~~l~~~l~~~l~~-~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~------------------  207 (242)
                      +++++.| +.++. .....+.+ .  ..++++.++..  +.+..++.+.|.++||.+.+...                  
T Consensus       271 ~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~  349 (424)
T 2po3_A          271 AAYREHL-ADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLP  349 (424)
T ss_dssp             HHHHHHT-CSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCH
T ss_pred             HHHHHHh-ccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCCh
Confidence            7777777 55431 11111111 1  24555776530  13578899999999999976311                  


Q ss_pred             -------CEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         208 -------NIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       208 -------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                             ..+|+.++...+++|++++++.|+++++..
T Consensus       350 ~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          350 HTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             HHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence                   128888788999999999999999988764

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.74  E-value=9.9e-18  Score=142.16  Aligned_cols=216  Identities=15%  Similarity=0.109  Sum_probs=138.4

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+|++|+++ +...++++++|++|+++|++|.+.+    +++|+++|++||+++|+||+|... ....+.   .+  
T Consensus       133 ~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~-~~~~~~---~~--  202 (400)
T 3nmy_A          133 DFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASP-MLQRPL---SL--  202 (400)
T ss_dssp             EEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH-HHCCGG---GG--
T ss_pred             EEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-ccCChh---hc--
Confidence            355688899998 5555668999999999999997775    999999999999999999999521 111111   12  


Q ss_pred             CCCEEE--eeccccCCccchhe--eE-eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSGGLYPISA--VL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~--~sK~~~~g~~~~g~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|+++  ++|+++|+..++|.  ++ .++++++.+.......+...+++.+..++..++.+.  ...++..+++..+.+
T Consensus       203 g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~  280 (400)
T 3nmy_A          203 GADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP--LRMRAHCENALALAQ  280 (400)
T ss_dssp             TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHH
T ss_pred             CCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHH
Confidence            345555  88999953255554  33 467777776653333444567776666555555432  235666777888888


Q ss_pred             HHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------------
Q psy6548         157 ELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------------  205 (242)
Q Consensus       157 ~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------  205 (242)
                      .| +..+..       ...         ...+.|.+++|++.........+.+.|.--++.++.+               
T Consensus       281 ~L-~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~  359 (400)
T 3nmy_A          281 WL-ETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHA  359 (400)
T ss_dssp             HH-TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTT
T ss_pred             HH-HcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCccccccc
Confidence            88 554321       000         0145688999999764234566666665433332211               


Q ss_pred             ------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         206 ------------SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       206 ------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                  .++.+|++....    +.+.+++.|+++++
T Consensus       360 ~~~~~~~~~~gi~~~liRlsvGle----~~~dli~dl~~al~  397 (400)
T 3nmy_A          360 SIPVARREQLGISDALVRLSVGIE----DLGDLRGDLERALV  397 (400)
T ss_dssp             TSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHC
T ss_pred             cCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHHh
Confidence                        357899995554    44555566666654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.73  E-value=6.9e-18  Score=142.76  Aligned_cols=199  Identities=14%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GG   95 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g   95 (242)
                      .+++++++++.++|++|.+..      +|++  ++|+  +++|+||+|.+ . ...... ...+....+.+|||.++ +|
T Consensus       155 ~~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~y~~-~-~~~~l~-~~~~~~i~~~S~SK~~g~~G  223 (391)
T 3bwn_A          155 KKGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFAYYW-P-HYTPIT-RRQDHDIMLFTFSKITGHAG  223 (391)
T ss_dssp             CCSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECTTCS-T-TTSCCC-CCBCCSEEEEEHHHHHSCGG
T ss_pred             CCCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCCCCC-C-CCCccc-cCCCCeEEEEechhhcCCCc
Confidence            457888888889999997774      2333  2355  99999999963 1 111111 11111112333889998 88


Q ss_pred             ccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---------h---ccHHHHHHHHHHHHHHHHHhhc
Q psy6548          96 LYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---------E---ENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        96 ~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---------~---~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                       +|+||+++ ++++++.+.......+++.+.+++.++.++++...         .   +...+.++++++.+.+.| +.+
T Consensus       224 -lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~  301 (391)
T 3bwn_A          224 -SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVV-KES  301 (391)
T ss_dssp             -GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHH-HTC
T ss_pred             -cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence             99999997 88888877654333345678888888888887542         1   335677788888888888 555


Q ss_pred             CC-CCC--Ce---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHH
Q psy6548         163 SP-DIV--PV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       163 ~~-~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~  225 (242)
                      +. .+.  ..         .+..|+++|+.++..    +.+.+.|.++||.+.|+     +.+++|+++.  .+++++++
T Consensus       302 ~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~  375 (391)
T 3bwn_A          302 DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNV  375 (391)
T ss_dssp             SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHH
T ss_pred             CCcccccCCccccccccccCCCcceEEEecCCcH----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHH
Confidence            31 011  00         123456788988753    24566778899999875     2679999955  58999999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      ++++|++++++
T Consensus       376 ~~~~L~~~~~~  386 (391)
T 3bwn_A          376 FLERLANMKLI  386 (391)
T ss_dssp             HHHHHHSCC--
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.73  E-value=3.1e-16  Score=136.75  Aligned_cols=223  Identities=13%  Similarity=0.037  Sum_probs=145.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh------CCEEEEeccccccCc--cCcccccccCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR--TGKLLAIHYEDV   81 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~   81 (242)
                      |+++ +...+.++++|+++.+.+++|.+.+    +++|.++|++|      |+++++|++|.++..  ............
T Consensus       191 d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~  266 (502)
T 3hbx_A          191 DPQQAVDMVDENTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP  266 (502)
T ss_dssp             CHHHHHHHCCTTEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST
T ss_pred             CHHHHHHHHhhCCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCC
Confidence            5666 4445567899999998999997766    99999999999      999999999976421  011111111111


Q ss_pred             CCCEEEe--eccccCCccchheeEeC-hhhh-hccC--CCCCCC-------CCCCCHHHHHHHHHHHHHHHh---ccHHH
Q psy6548          82 RPDIVIL--GKALSGGLYPISAVLAD-DEVM-GTLV--PGTHGS-------TYGGNPLACKLAMTALDVILE---ENMIE  145 (242)
Q Consensus        82 ~~~~~~~--sK~~~~g~~~~g~~~~~-~~~~-~~l~--~~~~~~-------~~~~~~~~~~~a~a~l~~~~~---~~~~~  145 (242)
                      ..|.+++  .|.++++ .++|+++.. ++.+ +.+.  +...+.       .++.+.....+.+++++.+..   ++..+
T Consensus       267 ~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~  345 (502)
T 3hbx_A          267 LVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVME  345 (502)
T ss_dssp             TEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEECcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455553  4888777 788987765 4433 2111  011111       122222234444555554433   34567


Q ss_pred             HHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC-------CCCEEEEeccC
Q psy6548         146 NAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPAL  216 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~  216 (242)
                      +..++++++++.| +.++. .+.. ......++.|.++... .+..++.++|.++|+++...       +...+|++++.
T Consensus       346 ~~~~~a~~l~~~L-~~~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~  423 (502)
T 3hbx_A          346 NCRENMIVLREGL-EKTERFNIVS-KDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIRE  423 (502)
T ss_dssp             HHHHHHHHHHHHH-HTTTCEEECS-CSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHH-HhCCCEEEEe-CCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCC
Confidence            7778888999999 66652 1111 1124567778776531 35668999999999987421       34689999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         217 NITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      .+|.|+++++++.|+++++.+.+.
T Consensus       424 ~~t~edid~li~~L~~~l~~l~~~  447 (502)
T 3hbx_A          424 DFSRTLAERLVIDIEKVMRELDEL  447 (502)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999887654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.72  E-value=4.7e-16  Score=133.83  Aligned_cols=223  Identities=10%  Similarity=0.044  Sum_probs=142.6

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh------CCEEEEeccccccCc--cCcccccccCCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR--TGKLLAIHYEDV   81 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~   81 (242)
                      |+++ +...+.++++|+++.+.+++|.+.+    +++|.++|++|      |+++++|++|.++..  .........--.
T Consensus       176 d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  251 (452)
T 2dgk_A          176 DPKRMIEACDENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP  251 (452)
T ss_dssp             CHHHHHHHCCTTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST
T ss_pred             CHHHHHHHHhhCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCC
Confidence            5666 4444567899999999999998765    99999999996      999999999976522  111111110011


Q ss_pred             CCCEEEee--ccccCCccchheeEeCh-hhh-hccC--CCCCCC-------CCCCCHHHHHHHHHHHHHHHh---ccHHH
Q psy6548          82 RPDIVILG--KALSGGLYPISAVLADD-EVM-GTLV--PGTHGS-------TYGGNPLACKLAMTALDVILE---ENMIE  145 (242)
Q Consensus        82 ~~~~~~~s--K~~~~g~~~~g~~~~~~-~~~-~~l~--~~~~~~-------~~~~~~~~~~~a~a~l~~~~~---~~~~~  145 (242)
                      ..|.++++  |.+.+| +++|+++.++ +.+ +.+.  +...++       .++.+.....+.+++++.+..   ++..+
T Consensus       252 ~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~  330 (452)
T 2dgk_A          252 RVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQN  330 (452)
T ss_dssp             TEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34656644  977688 8999999864 333 3332  111110       111122223333444544332   34567


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEe----eeceeEEEEecCCc---hhHHHHHHHHHHCCceec----cC---CCCEEE
Q psy6548         146 NAYKMGEIFRSELRSRLSPDIVPVVR----GKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTK----PI---SNNIIR  211 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~----~~---~~~~lR  211 (242)
                      +..++++++.+.| ++++. +....+    ....++.+.++...   .+..++.+.|.++|+.++    |.   +.+.+|
T Consensus       331 ~~~~~a~~l~~~L-~~~~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR  408 (452)
T 2dgk_A          331 ASYQVAAYLADEI-AKLGP-YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMR  408 (452)
T ss_dssp             HHHHHHHHHHHHH-HTTSS-EEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEE
T ss_pred             HHHHHHHHHHHHH-HhCCC-eEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEE
Confidence            7778888898989 66542 111112    24466777776421   245789999999999654    22   345899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         212 LSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      +++...+|+++++++++.|+++++.+.+.
T Consensus       409 is~~~~~t~e~id~li~~l~~~~~~~~~~  437 (452)
T 2dgk_A          409 IMCRRGFEMDFAELLLEDYKASLKYLSDH  437 (452)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99988889999999999999998876543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.72  E-value=8.6e-17  Score=134.72  Aligned_cols=202  Identities=16%  Similarity=0.174  Sum_probs=135.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...++++++|+++   +++|...+    +++|.++|++||+++|+||+|+ |....+.     ..+...|++++
T Consensus       112 d~~~l~~~i~~~~~~v~~~---~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~  179 (367)
T 3nyt_A          112 DPQLLEAAITPRTKAIIPV---SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACT  179 (367)
T ss_dssp             CGGGTGGGCCTTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEE
T ss_pred             CHHHHHHhcCcCCcEEEee---CCccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEE
Confidence            6666 55556789888843   45664444    9999999999999999999996 2222222     11222388886


Q ss_pred             e----ccccC-CccchheeEe-ChhhhhccCCC------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy6548          89 G----KALSG-GLYPISAVLA-DDEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILEENMIENAYKM  150 (242)
Q Consensus        89 s----K~~~~-g~~~~g~~~~-~~~~~~~l~~~------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~  150 (242)
                      |    |.+++ | . .|+++. ++++++.+...            ..+.++..+++.++++.+.++.+  +++.++.+++
T Consensus       180 Sf~~~K~l~~~g-~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~  255 (367)
T 3nyt_A          180 SFFPSAPLGCYG-D-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKV  255 (367)
T ss_dssp             ECCTTSSSCCSS-C-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHH
T ss_pred             ECCCCCcCCCcC-c-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            6    99997 7 4 777777 46666555431            11346677888877777766644  3456778888


Q ss_pred             HHHHHHHHHhhcCCCCCCeE---eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC---------------------
Q psy6548         151 GEIFRSELRSRLSPDIVPVV---RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS---------------------  206 (242)
Q Consensus       151 ~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------------------  206 (242)
                      .+++++.| +.++.......   ......+.+..+    +.+.+.++|.++||.+++..                     
T Consensus       256 ~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (367)
T 3nyt_A          256 AAEYDLSL-KQVGIGTPFIEVNNISVYAQYTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGD  330 (367)
T ss_dssp             HHHHHHHH-HHTTCCCCCCCTTEECCCSSEEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHH
T ss_pred             HHHHHHHh-ccCCeeccCCCCCCceeeEEEEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHH
Confidence            89999999 66642111111   112223344433    46789999999999886432                     


Q ss_pred             ---CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         207 ---NNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       207 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                         ...+|+.++...|++|++++++.|+++
T Consensus       331 ~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          331 KAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence               247999999999999999999998764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.72  E-value=2.4e-17  Score=141.73  Aligned_cols=202  Identities=11%  Similarity=0.010  Sum_probs=132.9

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEEEee--ccccC
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIVILG--KALSG   94 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~s--K~~~~   94 (242)
                      .+++++++++++ .+++|.+.+    +++|+++|++||+++|+||+|++ +...+.+....  ...+|+++.|  |++++
T Consensus       143 ~~~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~--~~g~Di~~~S~~K~l~~  215 (446)
T 2x3l_A          143 NNDGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTL--NYQADYVVQSFHKTLPA  215 (446)
T ss_dssp             ----CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGG--GGTCSEEEECHHHHSSS
T ss_pred             cCCCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChH--HcCCCEEEECCcccccc
Confidence            456788899888 566887765    89999999999999999999975 22222211111  2236787755  98887


Q ss_pred             CccchheeEeChhhhh--ccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548          95 GLYPISAVLADDEVMG--TLVPG-THGSTYGGNPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELRSRLSPDIVP  168 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~--~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~  168 (242)
                      + .++|++.+++++++  .+... ....+.+.+...+++..++++.+....   +.++.+++++++++.     +  +..
T Consensus       216 ~-~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g--~~~  287 (446)
T 2x3l_A          216 L-TMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----G--FEM  287 (446)
T ss_dssp             C-TTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----T--CEE
T ss_pred             c-cccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----C--CEE
Confidence            7 67899988876644  22111 111233455555555556677665532   455555555555543     1  111


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ........+++.++.  .+..++.+.|.++||.+...+.+++|++++..+|++++ +++++|+++++.+
T Consensus       288 ~~~~~~~~l~i~~~~--~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          288 LQVDDPLKLLIKYEG--FTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             EECSSTTEEEEECTT--SCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             CcCCCCeEEEEEeCC--cCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            111123457777763  46788999999999999845578999999988899999 9999999887654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.72  E-value=2.4e-16  Score=137.48  Aligned_cols=229  Identities=12%  Similarity=0.050  Sum_probs=141.4

Q ss_pred             cccccCCC-----Chhh--hcCCC-----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc
Q psy6548           3 LQFPVKSK-----QVPA--KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT   70 (242)
Q Consensus         3 ~~~~~~~~-----d~~~--~~~~~-----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~   70 (242)
                      .++.+|.+     |+++  +.+.+     .++++|+++.+.+++|.+.+    +++|+++|++||+++++|++|.++...
T Consensus       215 ~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~  290 (504)
T 2okj_A          215 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLM  290 (504)
T ss_dssp             GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred             cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHh
Confidence            45566765     5666  33332     26899999999999997765    999999999999999999999765322


Q ss_pred             CcccccccCCC-CCCEEEee--ccccCCccchheeEeCh-hhhhc----cCCCCCCC-C----------C------CCCH
Q psy6548          71 GKLLAIHYEDV-RPDIVILG--KALSGGLYPISAVLADD-EVMGT----LVPGTHGS-T----------Y------GGNP  125 (242)
Q Consensus        71 g~~~~~~~~~~-~~~~~~~s--K~~~~g~~~~g~~~~~~-~~~~~----l~~~~~~~-~----------~------~~~~  125 (242)
                      ...+.....++ .+|+++++  |+++++ +++|+++.++ ++++.    ..+...+. .          +      ....
T Consensus       291 ~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~  369 (504)
T 2okj_A          291 SRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDI  369 (504)
T ss_dssp             CTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCH
T ss_pred             CHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccH
Confidence            21111122233 56888854  999988 7899999875 45442    11111110 0          0      1134


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCc---------------hhHH
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSI---------------LEVY  189 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~  189 (242)
                      +.+.++++++..-.-+++.++..++++++.+.| ++++. .+....+....++.|......               ....
T Consensus       370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L-~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~  448 (504)
T 2okj_A          370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKI-KNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAP  448 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHH
Confidence            444444444431111345677888888899988 65532 111110122333444432210               1246


Q ss_pred             HHHHHHHHCCcee-cc--C-C-CCEEEEecc-CcCCHHHHHHHHHHHHHHHHHH
Q psy6548         190 DVCIKMKDAGLVT-KP--I-S-NNIIRLSPA-LNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       190 ~~~~~l~~~gi~~-~~--~-~-~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+.+.|.++|+++ .+  . + .+++|+++. ...|++|++++++.|+++++++
T Consensus       449 ~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          449 KIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             HHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7889999999643 32  1 2 258999984 7889999999999999887654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.71  E-value=6.6e-17  Score=137.67  Aligned_cols=216  Identities=14%  Similarity=0.027  Sum_probs=138.9

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      +..++.+|+++ +...++++++|++|.++|++|.+.+    +++|+++|++  ||+++|+|++|... ....+.     .
T Consensus       149 v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~-~~~~p~-----~  218 (415)
T 2fq6_A          149 TSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG-VLFKAL-----D  218 (415)
T ss_dssp             EEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT-TSSCGG-----G
T ss_pred             EEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCccc-ccCCcc-----c
Confidence            44568889988 5555668999999999999998776    9999999999  99999999999632 111111     2


Q ss_pred             CCCCEEE--eeccccC-CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSG-GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      ...|+++  ++|.+++ |-..+|++++++++++.+...........++..+..+..+++.+.  ...+...++...+++.
T Consensus       219 ~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~  296 (415)
T 2fq6_A          219 FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEW  296 (415)
T ss_dssp             GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHH
Confidence            3457776  6799994 312368888888777766542111112334554444444555432  2345556677778888


Q ss_pred             HHhhcCC-------CCCCe---------EeeeceeEEEEecCC--chhHHHHHHHHHHCCceec------------c---
Q psy6548         158 LRSRLSP-------DIVPV---------VRGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVTK------------P---  204 (242)
Q Consensus       158 l~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~------------~---  204 (242)
                      | ++.+.       .....         ..+.+.+++|.++..  ..+...+.+.|...++.++            |   
T Consensus       297 L-~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~  375 (415)
T 2fq6_A          297 L-AEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHI  375 (415)
T ss_dssp             H-HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHH
T ss_pred             H-HcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCcc
Confidence            8 44321       11000         013577889998762  1356666665543332222            1   


Q ss_pred             ----------CCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         205 ----------ISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       205 ----------~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                                ...+.+|+++....++++++.+.+.|++
T Consensus       376 s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          376 AAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             HTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             ccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence                      1247899999999888888888888764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.70  E-value=3e-16  Score=137.30  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=130.6

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEe--eccccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVIL--GKALSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~--sK~~~~g~~   97 (242)
                      ++++|+++.+++++|.+.+    +++|+++|++||+++++|++|+++......+.....++ .+|++++  +|+++++ +
T Consensus       259 ~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~  333 (515)
T 2jis_A          259 VPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-L  333 (515)
T ss_dssp             EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-S
T ss_pred             CcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-C
Confidence            5899999999999997766    99999999999999999999986533322121122244 6788885  7999987 7


Q ss_pred             chheeEeChh--hhhcc----CCCCCC-----------CCC------CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548          98 PISAVLADDE--VMGTL----VPGTHG-----------STY------GGNPLACKLAMTALDVILEENMIENAYKMGEIF  154 (242)
Q Consensus        98 ~~g~~~~~~~--~~~~l----~~~~~~-----------~~~------~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l  154 (242)
                      ++|+++.+++  +++..    .+...+           +++      ....+.+.+++.++..-.-+++.++..++++++
T Consensus       334 g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l  413 (515)
T 2jis_A          334 QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYL  413 (515)
T ss_dssp             CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8999988765  54431    111100           001      011233333333332111134667788889999


Q ss_pred             HHHHHhhcCC-CCCCeEeeeceeEEEEe-cC------Cchh--------HHHHHHHHHHCCceecc-----CCCCEEEEe
Q psy6548         155 RSELRSRLSP-DIVPVVRGKGLLNAIVL-DK------SILE--------VYDVCIKMKDAGLVTKP-----ISNNIIRLS  213 (242)
Q Consensus       155 ~~~l~~~l~~-~~~~~~~~~~~~~~~~~-~~------~~~~--------~~~~~~~l~~~gi~~~~-----~~~~~lR~~  213 (242)
                      .+.| ++++. .+... +.. ..+.+.. +.      ...+        ...+.+.|.++|+.+..     ...+++|++
T Consensus       414 ~~~L-~~~~g~~~~~~-~~~-~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis  490 (515)
T 2jis_A          414 VEEM-KKREGFELVME-PEF-VNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVV  490 (515)
T ss_dssp             HHHH-HTSTTEEESSC-CSS-SEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEE
T ss_pred             HHHH-hcCCCEEEeCC-CCe-eEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEE
Confidence            9999 66542 11111 112 2344433 21      0001        12367788889976532     224689999


Q ss_pred             c-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         214 P-ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       214 ~-~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      + +...|++|++++++.|++++++
T Consensus       491 ~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          491 VANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Confidence            8 8889999999999999887654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.69  E-value=3.3e-16  Score=133.71  Aligned_cols=214  Identities=16%  Similarity=0.106  Sum_probs=134.9

Q ss_pred             cccc-CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPV-KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~-~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..+ |.+|+++ +...++++++|++++++|++|.+.+    +++|+++|++||+++|+|++|++++..+...     +.
T Consensus       125 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~-----~~  195 (421)
T 2ctz_A          125 VRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL-----AW  195 (421)
T ss_dssp             EEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-----GG
T ss_pred             EEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc-----cc
Confidence            4556 7788888 5555568999999999999997776    9999999999999999999994454333322     33


Q ss_pred             CCCEEE--eeccccC-CccchheeEeC---hhh----hhccCCC---CCC-----------------------CCCCCCH
Q psy6548          82 RPDIVI--LGKALSG-GLYPISAVLAD---DEV----MGTLVPG---THG-----------------------STYGGNP  125 (242)
Q Consensus        82 ~~~~~~--~sK~~~~-g~~~~g~~~~~---~~~----~~~l~~~---~~~-----------------------~~~~~~~  125 (242)
                      .+|+++  ++|++++ | .++|+++..   +++    .+.+.+.   .++                       .....++
T Consensus       196 ~~Di~~~s~~K~l~~~g-~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~  274 (421)
T 2ctz_A          196 GAALVTHSLTKWVGGHG-AVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGP  274 (421)
T ss_dssp             TCSEEEEETTTTTTCSS-CCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCH
T ss_pred             CCeEEEECCcccccCCC-CcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence            578875  7799995 5 688887764   122    1222221   010                       1113456


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-CC--CeE--------------eeeceeEEEEecCCchhH
Q psy6548         126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-IV--PVV--------------RGKGLLNAIVLDKSILEV  188 (242)
Q Consensus       126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~--~~~--------------~~~~~~~~~~~~~~~~~~  188 (242)
                      +.++++...++.+.  ...++..++.+++.+.| +..+.. ..  ...              .+.+.++.|.+.....+.
T Consensus       275 ~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L-~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~  351 (421)
T 2ctz_A          275 FEAWVVLLGMETLS--LRAERHVENTLHLAHWL-LEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAA  351 (421)
T ss_dssp             HHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH-HTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHH
T ss_pred             HHHHHHHcCcchHH--HHHHHHHHhHHHHHHHH-HhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHH
Confidence            65555555555432  23455567888888888 554321 00  000              356788999987631345


Q ss_pred             HHHHHHHHHCCceeccC---------------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         189 YDVCIKMKDAGLVTKPI---------------------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       189 ~~~~~~l~~~gi~~~~~---------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ..+.+.+...++.++.+                           .++.+|+++..    |+++++++.|++++
T Consensus       352 ~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l~~al  420 (421)
T 2ctz_A          352 KRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             HHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred             HHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence            55666654444333211                           14789999544    57777787777664

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.69  E-value=1.6e-16  Score=138.01  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=136.8

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcc-cccccCCCCCCEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL-LAIHYEDVRPDIV   86 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~~~~   86 (242)
                      |+++  +.+.++++++|++ ++++++ .+.+    +++|+++|++||+++|+|++|. |+...+.. ..+.    ..|++
T Consensus       181 D~d~le~~i~~~~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div  250 (483)
T 1rv3_A          181 DYDRLEENARLFHPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVV  250 (483)
T ss_dssp             CHHHHHHHHHHHCCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEE
T ss_pred             CHHHHHHHHhhcCCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEE
Confidence            4455  3343367889988 666666 3443    9999999999999999999985 43222211 1111    35777


Q ss_pred             E--eeccccCCccchheeEeChhhh---------------hccCCCCCCC-CCCCCHHHHHHHHHHHHHHHh---ccHHH
Q psy6548          87 I--LGKALSGGLYPISAVLADDEVM---------------GTLVPGTHGS-TYGGNPLACKLAMTALDVILE---ENMIE  145 (242)
Q Consensus        87 ~--~sK~~~~g~~~~g~~~~~~~~~---------------~~l~~~~~~~-~~~~~~~~~~~a~a~l~~~~~---~~~~~  145 (242)
                      +  ++|+|+|  ++.|++++++++.               ..+....... ..+.+...+++..++++....   +++.+
T Consensus       251 ~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~  328 (483)
T 1rv3_A          251 TTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQR  328 (483)
T ss_dssp             EEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             EecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence            6  5599965  5679998886532               2221110111 112333444444456665543   45678


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCCchhHHHHHHHHHHCCceec----cC-----CCCEEEEecc
Q psy6548         146 NAYKMGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI-----SNNIIRLSPA  215 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lR~~~~  215 (242)
                      +++++++++.+.| ++++-.+..  ++ ..++.++.+...+.+..++.+.|.+.||.+.    |+     +.+++|++++
T Consensus       329 ~~~~~~~~l~~~L-~~~g~~~~~--~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~  405 (483)
T 1rv3_A          329 QVVANCRALSAAL-VELGYKIVT--GGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTP  405 (483)
T ss_dssp             HHHHHHHHHHHHH-HHTTCEEGG--GSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECH
T ss_pred             HHHHHHHHHHHHH-HhcCCEecc--CCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecC
Confidence            8888999999999 665421111  11 2356777776432457778889999999998    64     3578999987


Q ss_pred             CcCC----HHHHHHHHHHHHHHHHH
Q psy6548         216 LNIT----EQELREGLDIIINTINT  236 (242)
Q Consensus       216 ~~~t----~e~i~~~~~~l~~~l~~  236 (242)
                      ...+    ++|++++++.|+++++.
T Consensus       406 ~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          406 ALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHh
Confidence            6656    99999999999998876

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.67  E-value=5e-15  Score=128.44  Aligned_cols=211  Identities=11%  Similarity=0.065  Sum_probs=133.0

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEe--eccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVIL--GKALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~--sK~~~~g~~~   98 (242)
                      +.++++....+++|.+-+    +++|+++|++||+++++|++|.+.......+.....++ ..|.+++  +|+++++ ..
T Consensus       242 ~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g  316 (481)
T 4e1o_A          242 PVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FD  316 (481)
T ss_dssp             EEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred             cEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-Cc
Confidence            677777777888887655    99999999999999999999975322221111111232 3477774  5999977 67


Q ss_pred             hheeEeCh-hhhh-ccCCC--CC-----CC-------CC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHH
Q psy6548          99 ISAVLADD-EVMG-TLVPG--TH-----GS-------TY-GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        99 ~g~~~~~~-~~~~-~l~~~--~~-----~~-------~~-~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l  158 (242)
                      +|+++..+ .... .+...  ..     ..       +. .+........+++++.+..   +++.++..++++++++.|
T Consensus       317 ~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L  396 (481)
T 4e1o_A          317 CTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLV  396 (481)
T ss_dssp             CEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777654 3322 22110  00     00       00 0101122233444444332   346677888999999999


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCcee-cc---CCCCEEEEeccCc-CCHHHHHHHHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT-KP---ISNNIIRLSPALN-ITEQELREGLDIIINT  233 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~---~~~~~lR~~~~~~-~t~e~i~~~~~~l~~~  233 (242)
                       ++++. +....+....++++.+........++.++|.++|+++ .+   .+..++|+++... .|++++++++++|+++
T Consensus       397 -~~~~g-~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~  474 (481)
T 4e1o_A          397 -RNDPS-FEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDA  474 (481)
T ss_dssp             -HTCTT-EECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             -hcCCC-eEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             66542 1111123456778887654345788999999998544 33   3567899996544 4899999999999999


Q ss_pred             HHHHhh
Q psy6548         234 INTMAA  239 (242)
Q Consensus       234 l~~~~~  239 (242)
                      ++++.+
T Consensus       475 ~~~l~~  480 (481)
T 4e1o_A          475 ATLILS  480 (481)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            987653

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.66  E-value=3.8e-15  Score=126.82  Aligned_cols=211  Identities=12%  Similarity=0.147  Sum_probs=131.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC-ccCcccccccCCCCCCEEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~-   87 (242)
                      |+++ +...+.++++|++++   ++|...+    +++|.++|++||+++|+||+|+.+. ..+..     .+...|+.+ 
T Consensus       119 d~~~l~~~i~~~~~~v~~~~---~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~~  186 (418)
T 2c81_A          119 DPQLIKSAITDKTKAIIPVH---LFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTIGDIGAF  186 (418)
T ss_dssp             CHHHHGGGCCTTEEEECCBC---CTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEE
T ss_pred             CHHHHHHhhCCCCeEEEEeC---CcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEe-----cccccceEEE
Confidence            5666 444456788888764   5675543    9999999999999999999998653 22221     121234444 


Q ss_pred             -e--eccccCCccchheeEeC-hhhhhccCCCC-CC-------------CC------------CCCCHHHHHHHHHHHHH
Q psy6548          88 -L--GKALSGGLYPISAVLAD-DEVMGTLVPGT-HG-------------ST------------YGGNPLACKLAMTALDV  137 (242)
Q Consensus        88 -~--sK~~~~g~~~~g~~~~~-~~~~~~l~~~~-~~-------------~~------------~~~~~~~~~~a~a~l~~  137 (242)
                       |  +|++++|  ++|+++++ +++++.+.+.. .+             ..            ...+++..+.....++.
T Consensus       187 s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~  264 (418)
T 2c81_A          187 SCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQE  264 (418)
T ss_dssp             ECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTT
T ss_pred             eccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHH
Confidence             5  8999875  68898884 67665553210 00             00            01223322222222222


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEee--e-c-eeEEEEecC---CchhHHHHHHHHHHC-Cce---eccC
Q psy6548         138 ILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRG--K-G-LLNAIVLDK---SILEVYDVCIKMKDA-GLV---TKPI  205 (242)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~--~-~-~~~~~~~~~---~~~~~~~~~~~l~~~-gi~---~~~~  205 (242)
                      +  +++.++.+++++++++.| +.++. .......+  . . +++.+.++.   .+.+..++.+.|.++ ||.   +++.
T Consensus       265 ~--~~~~~~~~~~~~~l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~  341 (418)
T 2c81_A          265 L--DDKNAIREKNAMFLNDAL-SKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPP  341 (418)
T ss_dssp             H--HHHHHHHHHHHHHHHHHH-TTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred             H--HHHHHHHHHHHHHHHHHh-ccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccc
Confidence            2  345667777788888888 65532 11111111  1 1 234466653   014678899999999 999   7543


Q ss_pred             C----------------------------------------CCEEEEeccCcC-CHHHHHHHHHHHHHHHHHHh
Q psy6548         206 S----------------------------------------NNIIRLSPALNI-TEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ~----------------------------------------~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .                                        .+.+|++++..+ |+||++++++.|+++++++.
T Consensus       342 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~  415 (418)
T 2c81_A          342 YLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC  415 (418)
T ss_dssp             CCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence            1                                        148999999999 99999999999999987654

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.65  E-value=3.4e-15  Score=126.22  Aligned_cols=200  Identities=13%  Similarity=0.197  Sum_probs=128.8

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--ccccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~   97 (242)
                      ++++|++++   ++|...    .+++|.++|++||+++|+||+|+ |+...+...  ..++ ..++.++|  |.++ | .
T Consensus       122 ~~~~v~~~~---~~G~~~----~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~-~~~~~s~s~~K~l~-~-~  189 (394)
T 1o69_A          122 KPKALILTH---LYGNAA----KMDEIVEICKENDIVLIEDAAEALGSFYKNKAL--GTFG-EFGVYSYNGNKIIT-T-S  189 (394)
T ss_dssp             CCCEEEEEC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSC-C-S
T ss_pred             CceEEEEEC---CCCChh----hHHHHHHHHHHcCCEEEEECcCcccceeCCccc--cccc-CcEEEEEeCCccCC-C-C
Confidence            688888887   456443    39999999999999999999997 553333211  1111 35677774  7665 4 5


Q ss_pred             chheeEeC-hhhhhccCCCCC--------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548          98 PISAVLAD-DEVMGTLVPGTH--------------GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        98 ~~g~~~~~-~~~~~~l~~~~~--------------~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      ++|+++++ +++++.+.+...              +.++..+++..+.+++.++.++  +..++.+++++++++.| +.+
T Consensus       190 ~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L-~~~  266 (394)
T 1o69_A          190 GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFL-GEY  266 (394)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH-TTT
T ss_pred             CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh-ccc
Confidence            79999995 777766543111              1111244555555544444332  35678888899999998 554


Q ss_pred             CCCCCCeE---eeeceeEEEEecCC--------------------chhHHHHHHHHHHCCceeccCCC------------
Q psy6548         163 SPDIVPVV---RGKGLLNAIVLDKS--------------------ILEVYDVCIKMKDAGLVTKPISN------------  207 (242)
Q Consensus       163 ~~~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~gi~~~~~~~------------  207 (242)
                       -......   .....++++.++..                    +.+..++.+.|.++||.++++..            
T Consensus       267 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~  345 (394)
T 1o69_A          267 -FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAK  345 (394)
T ss_dssp             -EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCE
T ss_pred             -ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccC
Confidence             1111111   11112466777642                    13678899999999999986511            


Q ss_pred             ------------CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 ------------NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ------------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                  ..+|+..+..+|++|++++++.|+++++.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          346 AYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             EEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence                        34566667789999999999999887653

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.64  E-value=1.2e-15  Score=130.51  Aligned_cols=213  Identities=15%  Similarity=0.083  Sum_probs=130.5

Q ss_pred             cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      .+..+|.+|+++ +...++++++|++|+++|++|.+.+    +++|+++|++||+++|+|++|+..    .......+| 
T Consensus       148 ~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~----~~~~~~~~g-  218 (430)
T 3ri6_A          148 EVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP----YLLEAKRLG-  218 (430)
T ss_dssp             EEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT----TTCCGGGGT-
T ss_pred             EEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc----ccCChHHcC-
Confidence            355678889998 5555668999999999999998775    899999999999999999999621    111111223 


Q ss_pred             CCCEEE--eeccccC-Cccchhe-eEe-Ch-hh------------------hhccCCC-CCCCCCCCCHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSG-GLYPISA-VLA-DD-EV------------------MGTLVPG-THGSTYGGNPLACKLAMTALD  136 (242)
Q Consensus        82 ~~~~~~--~sK~~~~-g~~~~g~-~~~-~~-~~------------------~~~l~~~-~~~~~~~~~~~~~~~a~a~l~  136 (242)
                       .|+++  ++|+++| | ..+|. ++. .+ .+                  +..++.. ........++..+..++..++
T Consensus       219 -~div~~S~sK~l~g~g-~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~  296 (430)
T 3ri6_A          219 -VDIEVLSSTKFISGGG-TSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE  296 (430)
T ss_dssp             -CSEEEEECCCEEETTE-EECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH
T ss_pred             -CEEEEECCcccccCCC-CceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence             35555  7799985 3 33444 442 22 12                  1111110 001111235555544444555


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe---------------eece-eEEEEecCCchhHHHHHHHHHHCCc
Q psy6548         137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVVR---------------GKGL-LNAIVLDKSILEVYDVCIKMKDAGL  200 (242)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi  200 (242)
                      .+.  ...++..+++..+.+.| +..+.......+               +.|. +++|+++.. .++..|.+.|...++
T Consensus       297 ~l~--~r~~~~~~na~~la~~L-~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~-~~~~~~~~~l~~~~~  372 (430)
T 3ri6_A          297 TMA--LRIERSCQNAQELAHWL-LSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-EASYRFMDALKLIRR  372 (430)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHH-TTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH-HHHHHHHHHCSSSEE
T ss_pred             hHH--HHHHHHHHHHHHHHHHH-hCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH-HHHHHHHHhCCccee
Confidence            443  23456677888888888 655421000011               2355 999999854 667788888765555


Q ss_pred             eeccC---------------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         201 VTKPI---------------------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       201 ~~~~~---------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .++.+                           .++.||+++    ..|+.+.+++.|++++
T Consensus       373 ~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsv----G~E~~~dl~~dl~~al  429 (430)
T 3ri6_A          373 ATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSV----GIEEIEDLKEDILQAL  429 (430)
T ss_dssp             CSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEEC----CSSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe----ccCCHHHHHHHHHHhh
Confidence            44322                           356899994    4456677777777665

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.64  E-value=7.3e-15  Score=128.30  Aligned_cols=210  Identities=12%  Similarity=0.059  Sum_probs=129.1

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~   98 (242)
                      +++|+++.+++++|.+-+    +++|+++|++||+++++|++|.+.......+.....|+ ..|.++  .+|+++++ ..
T Consensus       249 ~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g  323 (511)
T 3vp6_A          249 PFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQ  323 (511)
T ss_dssp             EEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SC
T ss_pred             cEEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cC
Confidence            889999999999998755    99999999999999999999975322111111111122 457777  55999977 77


Q ss_pred             hheeEeCh-hhhhccCC---CCCC--------------CCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Q psy6548          99 ISAVLADD-EVMGTLVP---GTHG--------------STY-GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRS  156 (242)
Q Consensus        99 ~g~~~~~~-~~~~~l~~---~~~~--------------~~~-~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~  156 (242)
                      +|+++.++ .++.....   ....              .+. .+.+......+++++.+..   +++.++..++.+++++
T Consensus       324 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~  403 (511)
T 3vp6_A          324 CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYA  403 (511)
T ss_dssp             CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            88887654 34433211   0000              000 0111122333444554432   4567888889999999


Q ss_pred             HHHhhcCC-CCCCeEeeeceeEEEEecCCc---------------hhHHHHHHHHHHCCceecc-----CCCCEEEEec-
Q psy6548         157 ELRSRLSP-DIVPVVRGKGLLNAIVLDKSI---------------LEVYDVCIKMKDAGLVTKP-----ISNNIIRLSP-  214 (242)
Q Consensus       157 ~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~gi~~~~-----~~~~~lR~~~-  214 (242)
                      .| ++.+. .+....+....++.+.+....               ....++.+.|.++|+++..     .+.+++|+++ 
T Consensus       404 ~L-~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~  482 (511)
T 3vp6_A          404 KI-KNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVIS  482 (511)
T ss_dssp             HH-HSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCC
T ss_pred             HH-hcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEec
Confidence            99 66532 111110123344555443221               1134689999999975532     1235799998 


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         215 ALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +...+.+||+++++.|++..+.+
T Consensus       483 ~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          483 NPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Confidence            78889999999999998877654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.64  E-value=9.7e-15  Score=126.74  Aligned_cols=209  Identities=11%  Similarity=0.040  Sum_probs=129.6

Q ss_pred             EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccch
Q psy6548          23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPI   99 (242)
Q Consensus        23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~~   99 (242)
                      .+|++..+.+++|.+-+    +++|+++|++||+++++|++|.++......+.....++ ..|.++  .+|+++++ +++
T Consensus       237 ~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~  311 (486)
T 1js3_A          237 FFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC  311 (486)
T ss_dssp             EEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred             eEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce
Confidence            47777777888897654    99999999999999999999975321111111001122 357666  45999977 789


Q ss_pred             heeEeChh--hhhccCC---CCCC--C---------CC--C-CCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Q psy6548         100 SAVLADDE--VMGTLVP---GTHG--S---------TY--G-GNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  157 (242)
Q Consensus       100 g~~~~~~~--~~~~l~~---~~~~--~---------~~--~-~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~  157 (242)
                      |+++.+++  +.+.+..   ....  .         .+  . +......+.+++++.+..   +++.++..++++++.+.
T Consensus       312 G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~  391 (486)
T 1js3_A          312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAF  391 (486)
T ss_dssp             EEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99888643  2344421   0000  0         00  0 001112233344443322   34567777889999999


Q ss_pred             HHhhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----CCCCEEEEec-cCcCCHHHHHHHHHHHH
Q psy6548         158 LRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----ISNNIIRLSP-ALNITEQELREGLDIII  231 (242)
Q Consensus       158 l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~~~~~lR~~~-~~~~t~e~i~~~~~~l~  231 (242)
                      | ++++. .+..  +....++.+.++.......++.+.|.++|+++..    .+.+++|+++ +...+++++++++++|+
T Consensus       392 L-~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~  468 (486)
T 1js3_A          392 V-LQDPRFEVCA--EVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIR  468 (486)
T ss_dssp             H-HHCTTEEECS--CCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             H-hcCCCeEEeC--CCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9 66542 1111  1234556666654312357899999999876532    2467899995 55578999999999999


Q ss_pred             HHHHHHhh
Q psy6548         232 NTINTMAA  239 (242)
Q Consensus       232 ~~l~~~~~  239 (242)
                      ++++++.+
T Consensus       469 ~~~~~~~~  476 (486)
T 1js3_A          469 GLAAELLA  476 (486)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99887654

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.64  E-value=1.2e-14  Score=125.85  Aligned_cols=211  Identities=11%  Similarity=-0.008  Sum_probs=132.5

Q ss_pred             EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEe--eccccCCccc
Q psy6548          22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVIL--GKALSGGLYP   98 (242)
Q Consensus        22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~--sK~~~~g~~~   98 (242)
                      +.++++....+++|.+-+    +++|+++|++||+++++|++|.+.............++ ..|.+++  +|+++++ .+
T Consensus       235 ~~~v~~~~~~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g  309 (475)
T 3k40_A          235 PFYAVVTLGTTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FD  309 (475)
T ss_dssp             EEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred             cEEEEEEecCCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-Cc
Confidence            666777777788887755    99999999999999999999965211111111111232 3577774  5999977 77


Q ss_pred             hheeEeChh-hh-hccCC--CCC-----C-------CCCCCC-HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHH
Q psy6548          99 ISAVLADDE-VM-GTLVP--GTH-----G-------STYGGN-PLACKLAMTALDVILE---ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        99 ~g~~~~~~~-~~-~~l~~--~~~-----~-------~~~~~~-~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l  158 (242)
                      +|+++..++ .. +.+..  ...     +       ++...+ +......+++++.+..   +++.++..++++++++.|
T Consensus       310 ~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L  389 (475)
T 3k40_A          310 CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLC  389 (475)
T ss_dssp             CEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776643 32 21111  000     0       000011 1222333445554433   456777888999999999


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec-c---CCCCEEEEeccC-cCCHHHHHHHHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-P---ISNNIIRLSPAL-NITEQELREGLDIIINT  233 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~---~~~~~lR~~~~~-~~t~e~i~~~~~~l~~~  233 (242)
                       ++++. +....+....++.+.++.......++.++|.++|.++. +   .+..++|+++.. ..|+++|++++++|+++
T Consensus       390 -~~~~g-~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~  467 (475)
T 3k40_A          390 -VADSR-FELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAA  467 (475)
T ss_dssp             -HHSTT-EEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             -hcCCC-EEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             66642 11111234567777776543457889999999887553 2   356789999654 45899999999999999


Q ss_pred             HHHHhh
Q psy6548         234 INTMAA  239 (242)
Q Consensus       234 l~~~~~  239 (242)
                      ++++.+
T Consensus       468 ~~~~~~  473 (475)
T 3k40_A          468 ADEMEQ  473 (475)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.63  E-value=2e-15  Score=130.69  Aligned_cols=213  Identities=14%  Similarity=0.094  Sum_probs=135.5

Q ss_pred             CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCc-ccccccCCCCCCE
Q psy6548          10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK-LLAIHYEDVRPDI   85 (242)
Q Consensus        10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~-~~~~~~~~~~~~~   85 (242)
                      .|+++  +.+.++++++|++....++  ...+    +++|+++|++||+++++|++|. |+...|. ...++    ..|+
T Consensus       190 iD~d~le~~l~~~~~klIi~~~s~~~--~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDi  259 (490)
T 2a7v_A          190 IDYNQLALTARLFRPRLIIAGTSAYA--RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADI  259 (490)
T ss_dssp             BCHHHHHHHHHHHCCSEEEECCSSCC--SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSE
T ss_pred             cCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCE
Confidence            35666  3344445677777654332  2222    9999999999999999999984 4322222 11111    2466


Q ss_pred             EE--eeccccCCccchheeEeChh---------------hhhccCCCCCCCCCC-CCHHHHHHHHHHHHHHHh---ccHH
Q psy6548          86 VI--LGKALSGGLYPISAVLADDE---------------VMGTLVPGTHGSTYG-GNPLACKLAMTALDVILE---ENMI  144 (242)
Q Consensus        86 ~~--~sK~~~~g~~~~g~~~~~~~---------------~~~~l~~~~~~~~~~-~~~~~~~~a~a~l~~~~~---~~~~  144 (242)
                      ++  ++|+|+|  .+.|+++++++               +.+.++.....+..+ .++..+++..++++....   +++.
T Consensus       260 v~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~  337 (490)
T 2a7v_A          260 VTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS  337 (490)
T ss_dssp             EEEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             EEECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHH
Confidence            66  6799965  46788888764               223333221222222 233444444445555432   4567


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C-----CCCEEEEec-
Q psy6548         145 ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSP-  214 (242)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~lR~~~-  214 (242)
                      +++.++++++++.| ++.+-.+... ....+++++++...+.+..++.+.|.+.||.+..    .     .++.+|+.. 
T Consensus       338 ~~~~~na~~L~~~L-~~~G~~v~~~-~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~  415 (490)
T 2a7v_A          338 LQVLKNARAMADAL-LERGYSLVSG-GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAP  415 (490)
T ss_dssp             HHHHHHHHHHHHHH-HHTTCEEGGG-SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred             HHHHHHHHHHHHHH-HHcCcEEecC-CCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEeccc
Confidence            88889999999999 6654222111 1234678888876534678889999999999963    2     357899954 


Q ss_pred             ---cCcCCHHHHHHHHHHHHHHHHH
Q psy6548         215 ---ALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       215 ---~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                         +..++++|++++++.|.++++.
T Consensus       416 a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          416 ALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHh
Confidence               4467999999999999998864

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.62  E-value=6.1e-14  Score=120.18  Aligned_cols=201  Identities=14%  Similarity=0.126  Sum_probs=127.6

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecc-ccccCccCcccccccCCCCCCEEEee-cccc--
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV-QTGLGRTGKLLAIHYEDVRPDIVILG-KALS--   93 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~-~~~~~~~g~~~~~~~~~~~~~~~~~s-K~~~--   93 (242)
                      .++++++|+++.+ |++|.+.+    +++|+++|++||+++++|-. ++ ++.....   ..  ...|++++| |.|+  
T Consensus       193 i~~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-~g~~~~~---~~--~g~D~~~~s~kk~~~~  261 (438)
T 1wyu_A          193 VGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-LGVLKPP---GA--YGADIAVGDGQSLGLP  261 (438)
T ss_dssp             CCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-GGTBCCH---HH--HTCSEEEEECTTTTCC
T ss_pred             hCCCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-ccCcCCC---cc--CCCCEEEECCcccCCC
Confidence            3567999999988 99997775    99999999999999996622 22 2211111   11  246888864 6543  


Q ss_pred             ---CCccchheeEeChhhhhccCCCCC--------------------------CCCCCC---CHHHHHHHHHHHHHHHh-
Q psy6548          94 ---GGLYPISAVLADDEVMGTLVPGTH--------------------------GSTYGG---NPLACKLAMTALDVILE-  140 (242)
Q Consensus        94 ---~g~~~~g~~~~~~~~~~~l~~~~~--------------------------~~~~~~---~~~~~~~a~a~l~~~~~-  140 (242)
                         +| .++|++++++++++.+.....                          ..++..   +.++...+...+..+.. 
T Consensus       262 ~~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~  340 (438)
T 1wyu_A          262 MGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPE  340 (438)
T ss_dssp             CGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHH
Confidence               45 578999999888877643211                          112222   22222111112443332 


Q ss_pred             --ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCcee--ccC---CCCEEEEe
Q psy6548         141 --ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT--KPI---SNNIIRLS  213 (242)
Q Consensus       141 --~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~--~~~---~~~~lR~~  213 (242)
                        +++.++.+++++++++.| ++++. +....+ ...+..+.+... .+..++.++|.++||.+  .++   +++.+|++
T Consensus       341 g~~~~~~~~~~~~~~l~~~L-~~~~g-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis  416 (438)
T 1wyu_A          341 GLREVALKSVEMAHKLHALL-LEVPG-VRPFTP-KPFFNEFALALP-KDPEAVRRALAERGFHGATPVPREYGENLALFA  416 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTSTT-CEECSC-SSBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCC-eEECCC-CCeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccccCCCeEEEE
Confidence              345677788888898988 66631 111111 122222333222 35788999999999999  443   37899999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHH
Q psy6548         214 PALNITEQELREGLDIIINTI  234 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      ++..+|++|+++++++|++++
T Consensus       417 ~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          417 ATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHC
T ss_pred             ecccCCHHHHHHHHHHHHHHh
Confidence            998899999999999998764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.61  E-value=4e-14  Score=119.33  Aligned_cols=203  Identities=11%  Similarity=0.109  Sum_probs=130.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEe
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVIL   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~   88 (242)
                      |+++ +...+.++++|++.+.   .|...    .+++|.++|++||+++|+||+|+ |...     ....++..+++.++
T Consensus       117 d~~~l~~~i~~~~~~v~~~~~---~g~~~----~~~~i~~l~~~~~~~li~D~a~~~g~~~-----~~~~~g~~~~~~~~  184 (390)
T 3b8x_A          117 DIESLKEAVTDSTKAILTVNL---LGNPN----NFDEINKIIGGRDIILLEDNCESMGATF-----NNKCAGTFGLMGTF  184 (390)
T ss_dssp             CHHHHHHHCCTTEEEEEEECG---GGCCC----CHHHHHHHHTTSCCEEEEECTTCTTCEE-----TTEETTSSSSEEEE
T ss_pred             CHHHHHHHhCcCCeEEEEECC---ccChh----hHHHHHHHHHHcCCEEEEECcCcccCEE-----CCcccccccceEEE
Confidence            5666 4444457888888642   34333    39999999999999999999997 3211     11344666788888


Q ss_pred             ecccc----CCccchheeEeCh-hhhhccCC---CC----------------------------CCCCCCCCHHHHHHHH
Q psy6548          89 GKALS----GGLYPISAVLADD-EVMGTLVP---GT----------------------------HGSTYGGNPLACKLAM  132 (242)
Q Consensus        89 sK~~~----~g~~~~g~~~~~~-~~~~~l~~---~~----------------------------~~~~~~~~~~~~~~a~  132 (242)
                      ||..+    +| . .|++++++ ++.+.+.+   ..                            .+.++..+++..++++
T Consensus       185 s~~~~k~~~~g-~-gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l  262 (390)
T 3b8x_A          185 SSFYSNHIATM-E-GGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGI  262 (390)
T ss_dssp             ECCTTSSSCSS-S-CEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHH
T ss_pred             EccCCCCCccC-C-ceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHH
Confidence            76444    33 2 47787775 55443221   10                            1223336677777777


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-CCCeE-eeeceeEEEEecCC-chhHHHHHHHHHHCCceeccC----
Q psy6548         133 TALDVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVV-RGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPI----  205 (242)
Q Consensus       133 a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~----  205 (242)
                      +.++.++  +..++.+++++++++.| +.++.. ..... ......+++.++.. +.+.+++.+.|.++||.+++.    
T Consensus       263 ~~l~~l~--~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~  339 (390)
T 3b8x_A          263 EQLKKLP--RFISVRRKNAEYFLDKF-KDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGN  339 (390)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHH-TTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSS
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHh-cCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCc
Confidence            6666543  46778888899999999 665321 11110 11122355565531 136788999999999998752    


Q ss_pred             ---C-C---------------------CEEEEeccCcCCHHHHHHHHHHH
Q psy6548         206 ---S-N---------------------NIIRLSPALNITEQELREGLDII  230 (242)
Q Consensus       206 ---~-~---------------------~~lR~~~~~~~t~e~i~~~~~~l  230 (242)
                         . +                     +.+|++++..+|++|++++++.|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          340 FLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             GGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             hhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence               1 0                     25999999999999999999876

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.60  E-value=3.4e-15  Score=127.64  Aligned_cols=201  Identities=14%  Similarity=0.063  Sum_probs=132.4

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--e
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--L   88 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~   88 (242)
                      +++ +...+.+++++++++++|++|.+.+  +.+       +  ++..+.|+.+.+  .. .  .........++++  |
T Consensus       186 ~~~l~~~~~~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~--~~-~--s~~~~~~~~~i~~~S~  249 (427)
T 2hox_A          186 AANYVNVSNPEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW--PH-Y--TPIKYKADEDILLFTM  249 (427)
T ss_dssp             GGGGTTCSCGGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS--TT-T--SCCCSCBCCSEEEEEH
T ss_pred             HHHHHHhhcCCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC--CC-C--CccccCCCceEEEEeC
Confidence            444 3333457888888899999997776  322       2  456777877642  11 1  1111111223444  8


Q ss_pred             ecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---------c----cHHHHHHHHHHH
Q psy6548          89 GKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---------E----NMIENAYKMGEI  153 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---------~----~~~~~~~~~~~~  153 (242)
                      ||.++ +| +|+||+++ ++++++.+.+......++.+.+++.++.++++...+         +    ...+.++++++.
T Consensus       250 SK~~g~~G-~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
T 2hox_A          250 SKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN  328 (427)
T ss_dssp             HHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCC-ceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            89998 88 99999999 588888877643334456788888877777765321         1    234667777888


Q ss_pred             HHHHHHhhcCC-CC---C-C--------eEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-----CCCEEEEec
Q psy6548         154 FRSELRSRLSP-DI---V-P--------VVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSP  214 (242)
Q Consensus       154 l~~~l~~~l~~-~~---~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-----~~~~lR~~~  214 (242)
                      +++.| ++++. .+   . .        ..+..++++|+.++.+   ..++++.|+ ++||.+.|+     +++++|+++
T Consensus       329 l~~~L-~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~  404 (427)
T 2hox_A          329 ITALL-DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL  404 (427)
T ss_dssp             HHHHH-TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC
T ss_pred             HHHHH-HhCcCccccccccccccccccccCCCCceEEEEECCCc---HHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEe
Confidence            88888 55421 11   0 1        1233478899998752   345667765 789999875     368999995


Q ss_pred             cCcCCHHHHHHHHHHHHHHHH
Q psy6548         215 ALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       215 ~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .  .+++++++++++|++.++
T Consensus       405 ~--~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          405 I--KTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             S--SCHHHHHHHHHHHHHHHT
T ss_pred             c--CCHHHHHHHHHHHHHHHh
Confidence            5  589999999999988764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.57  E-value=1.8e-13  Score=114.66  Aligned_cols=203  Identities=10%  Similarity=0.048  Sum_probs=139.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      +...++++++|.+....+.+|.+.|-         +|+++|+++++|.+++ ++  ..+..++.++    ++++|  |++
T Consensus       146 ~~~i~~~t~lV~~~h~et~tG~~~pi---------i~~~~~~~~~vD~~q~-~g--~~~id~~~~~----~~~~s~~K~~  209 (377)
T 3e77_A          146 TWNLNPDASYVYYCANETVHGVEFDF---------IPDVKGAVLVCDMSSN-FL--SKPVDVSKFG----VIFAGAQKNV  209 (377)
T ss_dssp             GCCCCTTCSCEEEESEETTTTEECSS---------CCCCTTCCEEEECTTT-TT--SSCCCGGGCS----EEEEEGGGTT
T ss_pred             HhccCCCccEEEEeCccCchheEchh---------hhccCCCEEEEEcccc-cC--CCCCchhhcC----EEEEeccccc
Confidence            44456788888888888888987772         4778999999999996 32  1233344443    45555  999


Q ss_pred             cCCccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRS  156 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~  156 (242)
                      | + .++|+++.++++++.+.+..           ...++ +.+.....+..++++++.+.    .+.++.+++.+++++
T Consensus       210 g-p-~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~  287 (377)
T 3e77_A          210 G-S-AGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYE  287 (377)
T ss_dssp             S-C-TTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             C-C-CccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            5 4 56888888888876665321           11222 34455666666788877654    366788889999999


Q ss_pred             HHHhhcCCC--CCCeEee-eceeEEEEecCCc--hhH-HHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHH
Q psy6548         157 ELRSRLSPD--IVPVVRG-KGLLNAIVLDKSI--LEV-YDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       157 ~l~~~l~~~--~~~~~~~-~~~~~~~~~~~~~--~~~-~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      .| ++++.-  ....... .+..+.|.++...  .+. ..+.+.|.++||.+.++.  .+.+|+++..++|+||++++++
T Consensus       288 ~L-~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~  366 (377)
T 3e77_A          288 II-DNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAA  366 (377)
T ss_dssp             HH-HTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHH
T ss_pred             HH-HhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHH
Confidence            99 666421  1111112 2345778887620  122 468888889999997652  3569999999999999999999


Q ss_pred             HHHHHHHH
Q psy6548         229 IIINTINT  236 (242)
Q Consensus       229 ~l~~~l~~  236 (242)
                      .|++.+++
T Consensus       367 al~~~~~~  374 (377)
T 3e77_A          367 FMKKFLEM  374 (377)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.53  E-value=2.4e-13  Score=122.77  Aligned_cols=209  Identities=12%  Similarity=0.020  Sum_probs=129.0

Q ss_pred             EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc---cCccCc---ccccccCCCC-CC-EEE--eeccc
Q psy6548          23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG---LGRTGK---LLAIHYEDVR-PD-IVI--LGKAL   92 (242)
Q Consensus        23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~---~~~~g~---~~~~~~~~~~-~~-~~~--~sK~~   92 (242)
                      ++++++.+ +++|.+.+    +++|+++|++||+++++||+|.+   |+....   ....+.++.. ++ +++  ++|++
T Consensus       283 klviv~~p-n~~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L  357 (730)
T 1c4k_A          283 RLAVIQLG-TYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ  357 (730)
T ss_dssp             SEEEEESB-CTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS
T ss_pred             eEEEEECC-CCCCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC
Confidence            66666654 46787765    99999999999999999999963   221111   1111122332 11 444  67998


Q ss_pred             cCCccchheeEeChhhhh---------ccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Q psy6548          93 SGGLYPISAVLADDEVMG---------TLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~---------~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~  159 (242)
                      +|. ...|++..+++.+.         .+... ....+.+.+...+++..++++.+..   +++.++..++.+++++.| 
T Consensus       358 ~g~-~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L-  435 (730)
T 1c4k_A          358 AGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKL-  435 (730)
T ss_dssp             SCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCC-CCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-
Confidence            753 23445544433221         11100 0112234455555555556665543   346778888899999999 


Q ss_pred             hh-cCC-CC-CCeE--------------------------------e--eec--ee----EEEEecC----------Cch
Q psy6548         160 SR-LSP-DI-VPVV--------------------------------R--GKG--LL----NAIVLDK----------SIL  186 (242)
Q Consensus       160 ~~-l~~-~~-~~~~--------------------------------~--~~~--~~----~~~~~~~----------~~~  186 (242)
                      ++ +.. .+ ....                                .  ..+  .+    +.+..+.          .+.
T Consensus       436 ~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~  515 (730)
T 1c4k_A          436 IKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGV  515 (730)
T ss_dssp             HHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCC
T ss_pred             hhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCC
Confidence            55 321 00 0000                                0  011  01    3455431          124


Q ss_pred             hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      .+.++.+.|.++||.+...+...+|++++..+|+++++++++.|.++.+.+.
T Consensus       516 ~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          516 PATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             CHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            6788999999999999888889999999999999999999999999887653

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.53  E-value=2.9e-13  Score=113.93  Aligned_cols=203  Identities=13%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      +...++++++|.+..+.+.+|.++++   +++|.     +|+++++|.+++ +|.  .+..++.++    ++++|  |++
T Consensus       160 ~~~l~~~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs-~g~--~pidv~~~~----~~~~s~hK~l  224 (386)
T 3qm2_A          160 EWQLSDNAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSST-ILS--APLDVSRYG----VIYAGAQKNI  224 (386)
T ss_dssp             GCCCCTTCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTT-TTS--SCCCGGGCS----EEEEETTTTT
T ss_pred             HhhcCCCCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEcccc-cCC--CCCCccccC----EEEEeccccc
Confidence            44456789999999888888975332   44442     899999999996 322  233334443    44454  999


Q ss_pred             cCCccchheeEeChhhhhccCCCCC-----------CCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGTH-----------GSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRS  156 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~~-----------~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~  156 (242)
                      | + .++|+++.++++.+.+.+..-           +..+ +.|.....+..++++.+.+.    .+.++.+++.+++++
T Consensus       225 G-P-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~  302 (386)
T 3qm2_A          225 G-P-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYG  302 (386)
T ss_dssp             C-C-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             C-C-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            6 5 678999999888766654210           1111 23445566666777776543    356778888999999


Q ss_pred             HHHhhcCC-CCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         157 ELRSRLSP-DIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       157 ~l~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      .| ++++- ...... ......+.|.++....+ .++...|.++||.+..+.  .+.+|+++..++|+||++++++.|++
T Consensus       303 ~l-~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~  380 (386)
T 3qm2_A          303 VI-DNSDFYRNDVAQANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID  380 (386)
T ss_dssp             HH-HTCSSEECCBCGGGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HH-HHCCCcccCCCHHHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence            99 66641 111111 12234677888753234 678888999999987652  24599999999999999999999998


Q ss_pred             HHHH
Q psy6548         233 TINT  236 (242)
Q Consensus       233 ~l~~  236 (242)
                      ..++
T Consensus       381 ~~~~  384 (386)
T 3qm2_A          381 FERR  384 (386)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.52  E-value=1.1e-13  Score=116.41  Aligned_cols=208  Identities=10%  Similarity=0.068  Sum_probs=128.7

Q ss_pred             Chhh--hcCCCCC--EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCE
Q psy6548          11 QVPA--KLKSNPN--ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDI   85 (242)
Q Consensus        11 d~~~--~~~~~~~--~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~   85 (242)
                      |+++  +.+.+++  +++|+..   +++|...+    +++|.++|+ ||+++|+|++|+ ++.....   ... +...|+
T Consensus       115 d~~~l~~~i~~~~~~tk~v~~~---~~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~~~~---~~~g~~~~d~  182 (377)
T 3ju7_A          115 DKTVLWDKIEELKEEVAIVVPY---ATFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLMNGG---MHYGQDFSGM  182 (377)
T ss_dssp             CHHHHHHHHHHHGGGEEEECCB---CGGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCEETT---EETTTTCSSE
T ss_pred             CHHHHHHHHhcCCCCceEEEEE---CCCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCeECC---EeccCCCCcE
Confidence            5565  3343444  8888733   34675554    889999999 999999999996 2211111   112 222466


Q ss_pred             EEee----ccccCCccchheeEe-ChhhhhccCCCC------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Q psy6548          86 VILG----KALSGGLYPISAVLA-DDEVMGTLVPGT------------HGSTYGGNPLACKLAMTALDVILEENMIENAY  148 (242)
Q Consensus        86 ~~~s----K~~~~g~~~~g~~~~-~~~~~~~l~~~~------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~  148 (242)
                      .++|    |.+++|  ..|+++. ++++++.++...            .+..+..+++.++.+++.++.+  +.+.++.+
T Consensus       183 ~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~  258 (377)
T 3ju7_A          183 IIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERT  258 (377)
T ss_dssp             EEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHH
T ss_pred             EEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence            6654    999865  3555555 456655443211            2334556677666666665533  34567788


Q ss_pred             HHHHHHHHHHHhhcCCC-CCCeEe----eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------
Q psy6548         149 KMGEIFRSELRSRLSPD-IVPVVR----GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------  206 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------  206 (242)
                      ++++++.+.| +.++.. ......    ....++.+.++.. .+.+++.++|.++||.++...                 
T Consensus       259 ~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~  336 (377)
T 3ju7_A          259 RISEWYKQLL-QSNGLMKKGWQLQKTEAVIQQFMPILCPEE-VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTD  336 (377)
T ss_dssp             HHHHHHHHHH-HHTTTTTTTCBCCCCSCBCCSSEEEECCTT-SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSC
T ss_pred             HHHHHHHHHh-cCCCCccccccCCCCCcceEEEEEEEeCCh-hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCC
Confidence            8888999999 666521 111111    1112334554443 347899999999999885421                 


Q ss_pred             --------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 --------NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 --------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                              ...+|+.++...|++|++++++.|++.+.+
T Consensus       337 ~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          337 LTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             CHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             CHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence                    247999988899999999999999887765

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.51  E-value=3.3e-13  Score=115.32  Aligned_cols=186  Identities=12%  Similarity=0.075  Sum_probs=120.4

Q ss_pred             ccccCCC-----Chhh-hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCccc
Q psy6548           4 QFPVKSK-----QVPA-KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLL   74 (242)
Q Consensus         4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~   74 (242)
                      +..+|++     |+++ +...+.++++|++++ ++|++| ...+.+.+++|+++|++  ||+++|+||+|.++.....+.
T Consensus       142 ~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~  220 (431)
T 3ht4_A          142 YNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATR-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC  220 (431)
T ss_dssp             EEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSS-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred             EEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCC-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence            3456663     7777 444456899999995 666666 45667789999999999  999999999998654333222


Q ss_pred             ccccCCCCCCEEE--eeccccCCc-cchheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          75 AIHYEDVRPDIVI--LGKALSGGL-YPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        75 ~~~~~~~~~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                         .++  .|+++  ++|+++|++ .+.|++++++++++.+...    ..+.+.+.+.....++...++.+  +...++.
T Consensus       221 ---~~g--~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~  293 (431)
T 3ht4_A          221 ---HVG--ADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQA  293 (431)
T ss_dssp             ---GTT--CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHH
T ss_pred             ---ccC--CeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHH
Confidence               223  45555  789998631 3458899999888877531    12222222211122233344433  3456778


Q ss_pred             HHHHHHHHHHHHhhcCCCCC--CeEeeeceeEEEEecCCchhHHHHHHHHHHCC
Q psy6548         148 YKMGEIFRSELRSRLSPDIV--PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAG  199 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  199 (242)
                      .+++.++++.| +.++..+.  ...+..+.++.+.+++. ....++++.|.+..
T Consensus       294 ~~~a~~l~~~L-~~~g~~v~p~~~~~~~~li~~i~l~~~-~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          294 LKGAIFTAAFL-EKLGMNTSPAWNAPRTDLIQSVQFDDK-DRMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHHHHHHHH-HHHTCCEESCTTSCCSSSCCEEECCCH-HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHH-HhCcCEecCCCCCCCccEEEEEEeCCH-HHHHHHHHHHHhcC
Confidence            88889999999 66653211  11223445788888765 67888999998873

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.48  E-value=1.9e-12  Score=107.97  Aligned_cols=198  Identities=10%  Similarity=0.003  Sum_probs=135.9

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCC
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGG   95 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g   95 (242)
                      .++++++|.+....+.+|.+.+.         +++ +|+++++|.+++ +|..  +..++    ..|++++|  |++| +
T Consensus       137 l~~~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p  198 (361)
T 3m5u_A          137 FSDNADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-I  198 (361)
T ss_dssp             CCTTSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-C
T ss_pred             cCCCCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-C
Confidence            35678888888777778976552         333 499999999996 3211  22222    24677766  9996 4


Q ss_pred             ccchheeEeChhhhhccCC----CC--------CCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVP----GT--------HGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSEL  158 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~----~~--------~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l  158 (242)
                       .++|+++.++++.+.+.+    ..        ....+ +.+.....+..++++++.+.    .+.++.+++.+++++.|
T Consensus       199 -~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L  277 (361)
T 3m5u_A          199 -SGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECI  277 (361)
T ss_dssp             -TTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -CccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence             568999999888766543    11        11222 34555666677788887654    35677888899999999


Q ss_pred             HhhcCCC--CCCeE-eeeceeEEEEecC-CchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         159 RSRLSPD--IVPVV-RGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       159 ~~~l~~~--~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                       ++++..  ..... ......+.|.+++ ...+ .++.+.|.++||.+..+.  .+.+|+++..++|++|++++++.|++
T Consensus       278 -~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~  355 (361)
T 3m5u_A          278 -DLSNGFYKGHADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKE  355 (361)
T ss_dssp             -HTSTTSEEESSCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -HHCCCeeeccCCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence             766521  11111 1223467788876 2134 578899999999987652  25699999999999999999999998


Q ss_pred             HHHH
Q psy6548         233 TINT  236 (242)
Q Consensus       233 ~l~~  236 (242)
                      ..++
T Consensus       356 ~~~~  359 (361)
T 3m5u_A          356 FQGK  359 (361)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.44  E-value=8.5e-13  Score=119.95  Aligned_cols=207  Identities=13%  Similarity=0.061  Sum_probs=128.3

Q ss_pred             EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCCE------EE--eecccc
Q psy6548          24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPDI------VI--LGKALS   93 (242)
Q Consensus        24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~------~~--~sK~~~   93 (242)
                      +++++.+ +++|.+.+    +++|+++|++||+++++||+|.+....+..+  .....+...|+      ++  ++|+++
T Consensus       315 lvil~~p-n~~G~v~d----l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~  389 (755)
T 2vyc_A          315 YCVVTNC-TYDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN  389 (755)
T ss_dssp             CEEEESS-CTTSEEEC----HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS
T ss_pred             EEEEECC-CCCceecC----HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc
Confidence            5555554 56787765    9999999999999999999996421111110  00112200122      33  679987


Q ss_pred             CCccchheeEeChh--hh--hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCC-
Q psy6548          94 GGLYPISAVLADDE--VM--GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSP-  164 (242)
Q Consensus        94 ~g~~~~g~~~~~~~--~~--~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~-  164 (242)
                      |. ...|++..+++  .+  ..+... ....+.+.+.+.+++..++++.+..   +++.++..++.+++++.| +.++. 
T Consensus       390 g~-~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L-~~l~~~  467 (755)
T 2vyc_A          390 AL-SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM-ARLYKE  467 (755)
T ss_dssp             CC-TTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             Cc-CCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence            53 33566666443  11  111110 0122334566666666677776654   346788888888888888 54321 


Q ss_pred             --------C--C-CCeEee---------------------------------------ec------eeEEEEecCC----
Q psy6548         165 --------D--I-VPVVRG---------------------------------------KG------LLNAIVLDKS----  184 (242)
Q Consensus       165 --------~--~-~~~~~~---------------------------------------~~------~~~~~~~~~~----  184 (242)
                              -  . ......                                       .+      ..+.+..+..    
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G  547 (755)
T 2vyc_A          468 FTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG  547 (755)
T ss_dssp             HHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS
T ss_pred             ccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC
Confidence                    0  0 000000                                       11      2445555531    


Q ss_pred             -----chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         185 -----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       185 -----~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                           +..+..+.+.|.++||.+...+.+.+|++++...|+++++++++.|.+..+..
T Consensus       548 ~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          548 ELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             SBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence                 14457899999999999987788999999999999999999999999887654

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.43  E-value=1.8e-12  Score=110.02  Aligned_cols=178  Identities=13%  Similarity=0.133  Sum_probs=115.4

Q ss_pred             CChhh-hcCCCCCEEEEEEcc----cccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCCCC
Q psy6548          10 KQVPA-KLKSNPNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus        10 ~d~~~-~~~~~~~~~~i~~e~----~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      .|+++ +...++++++|++++    ++|++|.+.+    +++|+++|++  ||+++++|++|..+.....+.     ...
T Consensus       147 ~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~-----~~g  217 (409)
T 3jzl_A          147 VDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP-----EVG  217 (409)
T ss_dssp             CCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG-----GGT
T ss_pred             cCHHHHHHhccCCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCcc-----ccC
Confidence            56777 444456899999999    9999997654    9999999999  999999999996432111111     123


Q ss_pred             CCEEE--eeccccCCc-cchheeEeChhhhhccCCC--C--CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGGL-YPISAVLADDEVMGTLVPG--T--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        83 ~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~~--~--~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      .|+++  ++|.++|+. ...||+++++++++.+...  .  .+...+.....+.++...++.+  +...++..+++.+++
T Consensus       218 ~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la  295 (409)
T 3jzl_A          218 ADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTA  295 (409)
T ss_dssp             CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             CeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHH
Confidence            56666  779999541 2358899999988887642  1  1112222221122233334332  345677888899999


Q ss_pred             HHHHhhcCCCCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCc
Q psy6548         156 SELRSRLSPDIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL  200 (242)
Q Consensus       156 ~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  200 (242)
                      +.| +.++..+..  ..+....++.+.+.+. .....|++.|.....
T Consensus       296 ~~L-~~~g~~v~p~~~~~~~~~i~~i~l~~~-~~~~~~~~~L~~~~~  340 (409)
T 3jzl_A          296 AML-AEFGVEADPVWDAPRTDLIQSVSFHNK-EKMVAFAQAIQAASP  340 (409)
T ss_dssp             HHH-HHTTCEEESCTTSCCSSSCCEEECSCH-HHHHHHHHHHHHTSS
T ss_pred             HHH-HhCCCcccCCCCCCCccEEEEEEeCCH-HHHHHHHHHHHhcCc
Confidence            999 776632110  0112223778888754 678889999998743

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.38  E-value=8.3e-13  Score=112.54  Aligned_cols=174  Identities=10%  Similarity=0.122  Sum_probs=113.7

Q ss_pred             CChhh--hcCCC-CCEEEEEEcc----cccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCC
Q psy6548          10 KQVPA--KLKSN-PNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus        10 ~d~~~--~~~~~-~~~~~i~~e~----~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .|+++  +.+.+ +++++|++++    ++|++|.+.+    +++|+++|++  ||+++++|++|..+.....+.     .
T Consensus       162 ~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-----~  232 (427)
T 3i16_A          162 PNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-----D  232 (427)
T ss_dssp             CCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG-----G
T ss_pred             cCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc-----c
Confidence            46666  33443 6899999999    8899887653    9999999999  999999999996442112211     1


Q ss_pred             CCCCEEE--eeccccCCc-cchheeEeChhhhhccCCC--CCCCCCCCCH-HHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSGGL-YPISAVLADDEVMGTLVPG--THGSTYGGNP-LACKLAMTALDVILE-ENMIENAYKMGEI  153 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~~a~a~l~~~~~-~~~~~~~~~~~~~  153 (242)
                      ...|+++  ++|.++|+. .+.|+++++++++++++..  ..+......+ +.  +++.+++.+.. +...++..+++.+
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~l~gl~~~~~r~~~~~~~a~~  310 (427)
T 3i16_A          233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--VVRSMYQGLFLAPHISMEALKGAIL  310 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2346666  779999531 3468999999998887652  1111111111 21  12223333332 3467788889999


Q ss_pred             HHHHHHhhcCCCCCCeEeeece-----eEEEEecCCchhHHHHHHHHHHCC
Q psy6548         154 FRSELRSRLSPDIVPVVRGKGL-----LNAIVLDKSILEVYDVCIKMKDAG  199 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~g  199 (242)
                      +++.| +.++..+   .++.+.     ++.+.+.+. ..+.+|++.|....
T Consensus       311 la~~L-~~~g~~V---~p~~~~~~~~~i~~i~l~~~-~~~~~f~~~l~~~~  356 (427)
T 3i16_A          311 CSRIM-ELAGFEV---MPKYDEKRSDIIQSIKFNDK-DKLIEFCKGIQTGS  356 (427)
T ss_dssp             HHHHH-HHTTCEE---ESCTTSCCSSSCEEEECSSH-HHHHHHHHHHHHTC
T ss_pred             HHHHH-HhCCCee---cCCCCCCCccEEEEEEECCH-HHHHHHHHHHhhcC
Confidence            99999 7766311   122233     788888765 67888999998873

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.32  E-value=1.8e-11  Score=104.37  Aligned_cols=176  Identities=14%  Similarity=0.136  Sum_probs=112.3

Q ss_pred             CChhh-h-cCCC-CCEEEEEEcc----cccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCC
Q psy6548          10 KQVPA-K-LKSN-PNICAFMVEP----IQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus        10 ~d~~~-~-~~~~-~~~~~i~~e~----~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .|+++ + .+.+ +++++|++++    ++|++|.+.    .+++|+++|++  ||+++++|++|..+.....+.     .
T Consensus       162 ~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~----dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~-----~  232 (427)
T 3hvy_A          162 VDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIA----EIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT-----D  232 (427)
T ss_dssp             CCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHH----HHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG-----G
T ss_pred             cCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHH----HHHHHHHHHHHhCCCCEEEEECCccccccCCCCc-----c
Confidence            56676 3 3432 7899999999    888888665    39999999999  899999999996432122221     1


Q ss_pred             CCCCEEE--eeccccCCc-cchheeEeChhhhhccCCC--CC--CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSGGL-YPISAVLADDEVMGTLVPG--TH--GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~~--~~--~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                      ...|+++  ++|+++|+. .+.|++++++++++.++..  ..  +.+.+.++.....+...++.+  +...++..+++.+
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~  310 (427)
T 3hvy_A          233 VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVF  310 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHH
Confidence            2346666  779999531 2458899999998887642  11  111122111122223333322  3466778889999


Q ss_pred             HHHHHHhhcCCCCCCe--EeeeceeEEEEecCCchhHHHHHHHHHHC
Q psy6548         154 FRSELRSRLSPDIVPV--VRGKGLLNAIVLDKSILEVYDVCIKMKDA  198 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  198 (242)
                      +++.| +.++..+...  .+....++.+.+.+. ..+.+|++.|...
T Consensus       311 la~~L-~~~g~~V~p~~~~~~~~li~~~~l~~~-~~~~~f~~~l~~~  355 (427)
T 3hvy_A          311 CARIM-ELAGFDVLPKYNDKRTDIIQAIKFNDE-KKLIDFIKGIQTA  355 (427)
T ss_dssp             HHHHH-HHTTCEEESCTTSCCSSSEEEEECSSH-HHHHHHHHHHHHT
T ss_pred             HHHHH-HhCCCeecCCCCCCCceEEEEEeCCCH-HHHHHHHHHhccc
Confidence            99999 7766311100  111223788888755 6778899999876

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.22  E-value=2.8e-10  Score=96.27  Aligned_cols=213  Identities=10%  Similarity=0.069  Sum_probs=126.9

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEee--ccccCCc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVILG--KALSGGL   96 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~s--K~~~~g~   96 (242)
                      +.+.+|+..+.+.- |..+.+   +++|+++|++||+++++||+|.........+....+.. ..|+++.|  |.+... 
T Consensus       215 ~~i~~V~~Ttt~y~-p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvp-  289 (501)
T 3hl2_A          215 DCILCIHSTTSCFA-PRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-  289 (501)
T ss_dssp             GGEEEEEEECSCCT-TBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCC-
T ss_pred             CcEEEEEecCCCCC-Cccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceee-
Confidence            45677777665542 323333   99999999999999999999954211111111111122 37888876  877633 


Q ss_pred             cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHH-HHHh--ccHHHHHHHHHHHHHHHHHhhcCC---CCCCe
Q psy6548          97 YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALD-VILE--ENMIENAYKMGEIFRSELRSRLSP---DIVPV  169 (242)
Q Consensus        97 ~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~-~~~~--~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~  169 (242)
                      .+.+.+.. ++++++.+...+.+ +.+++ .++ ..+.++. +..+  .++.++..++.+++++.| +++..   .....
T Consensus       290 IGG~ii~~~d~e~l~~~~~~yPG-r~S~S-psl-dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L-~~la~~~ge~ll~  365 (501)
T 3hl2_A          290 VGGAIIAGFNDSFIQEISKMYPG-RASAS-PSL-DVLITLLSLGSNGYKKLLKERKEMFSYLSNQI-KKLSEAYNERLLH  365 (501)
T ss_dssp             SSCEEEEESCHHHHHHHHHTSCS-CBCSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTTCCBCC
T ss_pred             cCceEEEeCCHHHHHHHHHhCCC-CCCCc-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChhhcC
Confidence            33334433 45666666442221 22222 222 2233333 3333  456777788899999999 66532   11222


Q ss_pred             EeeeceeEEEEecCCc----hhHHHHHHHHHHCCceec----cC--------------------CCCEEEEeccCcCCHH
Q psy6548         170 VRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTK----PI--------------------SNNIIRLSPALNITEQ  221 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~----~~--------------------~~~~lR~~~~~~~t~e  221 (242)
                      .+....-+.+.+....    ....++...|+.++|--.    ++                    ...++-++.....+.+
T Consensus       366 ~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~  445 (501)
T 3hl2_A          366 TPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQ  445 (501)
T ss_dssp             CTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHH
T ss_pred             CCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHH
Confidence            2333344455554321    347789999999865431    11                    1357889888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc
Q psy6548         222 ELREGLDIIINTINTMAAKK  241 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~~~~  241 (242)
                      |++.++++|++++.++.+++
T Consensus       446 ~v~~~~~~l~~~~~~~~~~~  465 (501)
T 3hl2_A          446 DVDLFIKRLDRCLKAVRKER  465 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999876643

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.20  E-value=2.1e-10  Score=97.61  Aligned_cols=212  Identities=9%  Similarity=0.082  Sum_probs=120.7

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC-CCCCEEEee--ccccCCc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED-VRPDIVILG--KALSGGL   96 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~~~~~~s--K~~~~g~   96 (242)
                      +.+++|++.|.+...|.+-+    +++|+++|++||+++++|++|.........+....+. -..|.++.|  |++... 
T Consensus       197 ~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-  271 (450)
T 3bc8_A          197 EHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-  271 (450)
T ss_dssp             GGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-
T ss_pred             CCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-
Confidence            36777888776655443333    9999999999999999999996421111111101111 146888766  988866 


Q ss_pred             cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC---CCCCCeE
Q psy6548          97 YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS---PDIVPVV  170 (242)
Q Consensus        97 ~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~  170 (242)
                      ...+++.. +++..+.+.....+ ..+.+ +++......+....+  .+..++..++.+++++.| +++.   .......
T Consensus       272 ~~~~~l~~rd~~~~~~~~~~~~g-~~s~S-psL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l-~~~~~~~g~~~l~~  348 (450)
T 3bc8_A          272 VGGAIIAGFNEPFIQDISKMYPG-RASAS-PSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL-KKLAEAHNERLLQT  348 (450)
T ss_dssp             SSCEEEEESCHHHHHHHHHHSCS-CBCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCBCCC
T ss_pred             hccEEEEecCHHHHHHHHHHhhc-CCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhcCceecCC
Confidence            56676665 45555555432211 11222 233322222222221  223344466778888888 5544   2111111


Q ss_pred             eeeceeEEEEecC-----CchhHHHHHHHHHHCCc---eec---------------------cCCCCEEEEeccCcCCHH
Q psy6548         171 RGKGLLNAIVLDK-----SILEVYDVCIKMKDAGL---VTK---------------------PISNNIIRLSPALNITEQ  221 (242)
Q Consensus       171 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi---~~~---------------------~~~~~~lR~~~~~~~t~e  221 (242)
                      +..+.-..+.+..     + .|...+.-.+...|+   -+.                     -.+..++-+..+...+++
T Consensus       349 ~~~~~~~~~~l~~~~~~~~-~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~  427 (450)
T 3bc8_A          349 PHNPISLAMTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQ  427 (450)
T ss_dssp             TTCSSEEEEECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHH
T ss_pred             ccCCCcceeeccccccccc-CCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHH
Confidence            1111112222221     2 466677777776652   211                     124678888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy6548         222 ELREGLDIIINTINTMAAK  240 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~~~~  240 (242)
                      ++++++++|+++..+.+++
T Consensus       428 di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          428 DVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999998877654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.07  E-value=2e-09  Score=96.81  Aligned_cols=204  Identities=11%  Similarity=0.020  Sum_probs=126.0

Q ss_pred             EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc--CCCCCCEE---E--eeccccCC
Q psy6548          24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--EDVRPDIV---I--LGKALSGG   95 (242)
Q Consensus        24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~--~~~~~~~~---~--~sK~~~~g   95 (242)
                      ++++..+ +++|.+.+    +++|+++|++++  +++||+|.+....+..+. ...  .+..+|++   +  ++|+++|.
T Consensus       300 ~vivt~p-n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gl  372 (715)
T 3n75_A          300 HAVITNS-TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF  372 (715)
T ss_dssp             EEEEESS-CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCC
T ss_pred             EEEEECC-CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCC
Confidence            4555444 78897775    899999998764  799999964211121111 011  12124644   3  67998863


Q ss_pred             ccchheeEeChhhh-hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCC---CC-
Q psy6548          96 LYPISAVLADDEVM-GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSP---DI-  166 (242)
Q Consensus        96 ~~~~g~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~---~~-  166 (242)
                       ...|++.++.++. +.+... ....+-+.+++.+++..++++.++.   +++.+++.++.+++|+.| ++++.   +. 
T Consensus       373 -tqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L-~~i~~~~~~~~  450 (715)
T 3n75_A          373 -SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEI-KRLRTESDGWF  450 (715)
T ss_dssp             -TTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSSCC
T ss_pred             -CCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH-HHhhhhcccce
Confidence             3467776654321 111111 1233445677777777778887753   457788899999999999 55431   00 


Q ss_pred             --CCeEe-----------------------e-----eceeEEEEecCC---------chhHHHHHHHHHHCCceeccCCC
Q psy6548         167 --VPVVR-----------------------G-----KGLLNAIVLDKS---------ILEVYDVCIKMKDAGLVTKPISN  207 (242)
Q Consensus       167 --~~~~~-----------------------~-----~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~  207 (242)
                        .+...                       .     .-.-+.+..+.-         +..+.++.+.|.++||.+--.+.
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~  530 (715)
T 3n75_A          451 FDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP  530 (715)
T ss_dssp             CEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEET
T ss_pred             eeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCC
Confidence              00000                       0     001123333321         13456888999999999988888


Q ss_pred             CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         208 NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..+=+..+...|+++++++++.|.+.-+.
T Consensus       531 ~~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          531 YNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            88888888888999999999999876553

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.98  E-value=1.1e-08  Score=86.29  Aligned_cols=207  Identities=16%  Similarity=0.135  Sum_probs=130.8

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcc-cccccCCCCCCEEEee--c
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKL-LAIHYEDVRPDIVILG--K   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~-~~~~~~~~~~~~~~~s--K   90 (242)
                      +.+.+.++++|++-...-+   +..+   +++++++|++.|++|++|-+| +|+...|.. ..+   + ..|+++.+  |
T Consensus       197 ~~A~~~kPklIi~G~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~---~-~ADvVTtTTHK  266 (490)
T 3ou5_A          197 LTARLFRPRLIIAGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---K-HADIVTTTTHK  266 (490)
T ss_dssp             HHHHHHCCSEEEECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---G-TCSEEEEESSS
T ss_pred             HHHhhcCCCeEEECCccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcc---c-cceEEeccccc
Confidence            4455667888877663222   2332   999999999999999999999 776444421 112   2 25888855  9


Q ss_pred             cccCCccchheeEeChh---------------hhhccCCCCCCCCCCCCHHHHHHHHH-HHHH-HHh--ccHHHHHHHHH
Q psy6548          91 ALSGGLYPISAVLADDE---------------VMGTLVPGTHGSTYGGNPLACKLAMT-ALDV-ILE--ENMIENAYKMG  151 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~-~~~--~~~~~~~~~~~  151 (242)
                      +|.|+  |.|.++++++               +.+.+....+.+..+++-.-..++.+ ++.. +..  .++.+++.+++
T Consensus       267 TLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NA  344 (490)
T 3ou5_A          267 TLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNA  344 (490)
T ss_dssp             TTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             cccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99974  6787877652               22222221122222233222222222 2332 322  35778888899


Q ss_pred             HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC-----CCCEEEEecc----CcC
Q psy6548         152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI-----SNNIIRLSPA----LNI  218 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lR~~~~----~~~  218 (242)
                      +.|.+.| ...+-.+.... ...+++++++...+.+..+..+.|.+.||.+.    |.     .++.||+.-+    ..+
T Consensus       345 kaLA~~L-~~~G~~vvsGg-TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~  422 (490)
T 3ou5_A          345 RAMADAL-LERGYSLVSGG-TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF  422 (490)
T ss_dssp             HHHHHHH-HHTTCEEGGGS-CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred             HHHHHHH-HhCCCeeecCC-CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCC
Confidence            9999999 66664333221 23467788886654567778888889999985    22     3568999643    467


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTIN  235 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~  235 (242)
                      .++|++++.+.|.++++
T Consensus       423 ~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          423 REDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            88999999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-74
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	5e-72
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	9e-58
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	8e-56
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	2e-43
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	4e-35
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-32
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	7e-23
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	2e-12
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	9e-12
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	3e-10
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	3e-08
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	0.002

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  230 bits (586), Expect = 1e-74
 Identities = 119/218 (54%), Positives = 163/218 (74%), Gaps = 1/218 (0%)

Query: 18  SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
            +PN+CAF+VEPIQGEAG +VP D YL+ V  +C +YNVLF+ADEVQTGLGRTGKLL +H
Sbjct: 183 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 242

Query: 78  YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
           + +V+PD+++LGKALSGG YPISAVLA+D++M  + PG HGSTYGGNPLA  + + AL+V
Sbjct: 243 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 302

Query: 138 ILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
           ++ E + ENA K+G  F   L+  L    IV  VRGKGLL AI     ++ V D+C+K+K
Sbjct: 303 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 362

Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           + GL+T+ + +  IRL+P L IT+++L E  +II+ T+
Sbjct: 363 ENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  223 bits (568), Expect = 5e-72
 Identities = 132/221 (59%), Positives = 170/221 (76%), Gaps = 2/221 (0%)

Query: 15  KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
           +   +PN+ AFMVEPIQGEAG VVPD GYL  VR LC+++ VLFIADE+QTGL RTG+ L
Sbjct: 182 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 241

Query: 75  AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
           A+ YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG H STYGGNPL C++A+ A
Sbjct: 242 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAA 301

Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCI 193
           L+V+ EEN+ ENA K+G I R+EL  +L  D+V  VRGKGLLNAIV+ +    + + VC+
Sbjct: 302 LEVLEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCL 360

Query: 194 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           +++D GL+ KP   +IIR +P L I E ELRE ++II  TI
Sbjct: 361 RLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 401

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  186 bits (472), Expect = 9e-58
 Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 4/212 (1%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
           +    A ++EP+QGE G       +L+  R +  +   L I DE+QTG+GRTGK  A  +
Sbjct: 175 DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 234

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             + PDI+ L KAL GG  P+   +  +EV  ++  G HG+T+GGNPLA    + A+  +
Sbjct: 235 FGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 293

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
               + E A ++G  F  +LR+  SP I   VRG GL+  + L +       +    K+ 
Sbjct: 294 ERTRLWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAP--YIARLEKEH 350

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
            ++       +IR  P L I +++L   ++ +
Sbjct: 351 RVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 382

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  181 bits (461), Expect = 8e-56
 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 13/233 (5%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
             +I A ++EP+QGE G       +++++RALC ++ ++ IADEVQ+G GRTG L A+  
Sbjct: 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQ 255

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
             V PD+    K+++GG +P++ V    EVM  + PG  G TY GNP+AC  A+  L V 
Sbjct: 256 MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 314

Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVY-------D 190
            +EN+++ A  +G+  +  L +       +  VRG G + AI L +             +
Sbjct: 315 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAE 374

Query: 191 VCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
           +  + +D GL+        N++R+   L I + ++R+GL+II    +   AK+
Sbjct: 375 IVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD--EAKQ 425

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (378), Expect = 2e-43
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 17  KSNPNICAFMVEPIQGEAGA-VVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
                I A ++EPI   AG   +    +LK++R +C +  +L IADE+ TG GRTGKL A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259

Query: 76  IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKL 130
             + ++ PDI+ LGKAL+GG   +SA L   EV  T+  G      HG T+ GNPLAC  
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319

Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD 190
           A  +L ++   +  +    +    R +L      ++V  VR  G +  +     +  +  
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-NMAA 378

Query: 191 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
           +     + G+  +P    +I L P   I  Q+L+     +   +
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAV 421

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  127 bits (320), Expect = 4e-35
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 14  AKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
           A    NP  I   ++EPI G +G +VPD G+L+ +R +  +++ L + DEV TG  R   
Sbjct: 191 ALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTG-FRIAY 249

Query: 73  LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACK 129
                   V PD+  LGK + GG  P+ A     E+M  + P        T  GNPLA  
Sbjct: 250 GGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 308

Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEV 188
             +  L+++ +    E   ++ +     L +                +      +  +  
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 368

Query: 189 YD------------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
           Y+                M + G+   P  +       +L  TE+++   L      ++ 
Sbjct: 369 YEDAKKSDLQKFSRFHRGMLEQGIYLAP--SQFEAGFTSLAHTEEDIDATLAAARTVMSA 426

Query: 237 M 237
           +
Sbjct: 427 L 427

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  120 bits (301), Expect = 2e-32
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 13/231 (5%)

Query: 17  KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
           +S+ N+ AF+ EPI    G +   DGY+  ++  C    +L I DE QTG+GRTG + A 
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256

Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGSTYGGNPLACKLAMTAL 135
             + V PDI+ L K L  GL   + V +          G    +T+  +PL   + +  L
Sbjct: 257 QRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 316

Query: 136 DVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVL--DKSILEVYD-- 190
           DV+  + ++  A  MG+  R  L   +   D +  VRG+GLL  + +  D+   E  D  
Sbjct: 317 DVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGL 376

Query: 191 ---VCIKMKDAGL----VTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
              +  +  + GL    V  P    + R++P L ++E E+  GL ++   I
Sbjct: 377 GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 427

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 94.3 bits (233), Expect = 7e-23
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 8/228 (3%)

Query: 10  KQVPAKLKSNPNICAFMVEPIQGEAGAVV-PDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
           + +  K +      A ++       G      D + +K+R +  ++   F+ DEVQTG G
Sbjct: 236 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGG 295

Query: 69  RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
            TGK  A  +  +     ++  +       ++      E      P    +T+ G+P   
Sbjct: 296 STGKFWAHEHWGLDDPADVMTFSK----KMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKN 351

Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL 186
            L    +++I  E+++ NA   G++  + L    +  P  +  VRG+G   +       +
Sbjct: 352 LLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI 411

Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
               +    ++ G++     +  IR  P L   +      L+I  + +
Sbjct: 412 -RNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (154), Expect = 2e-12
 Identities = 29/264 (10%), Positives = 64/264 (24%), Gaps = 43/264 (16%)

Query: 14  AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK 72
            +     N+   +       AG        LK + ++  +Y++  + D  +        K
Sbjct: 176 IEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIK 235

Query: 73  LLAIHYEDVRPDIVI-------------LGKALSGGLYPISAVLADDEVMGTLVPGTHGS 119
                Y+D   + +                K     +  +  +  D          T   
Sbjct: 236 QREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCV 295

Query: 120 TYGGNPLACKLAMTA-------LDVILEENMIENAYKMGEIFRSELRSR----------- 161
              G P    L   A       L   +  + +       +     L              
Sbjct: 296 VQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHA 355

Query: 162 -------LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT---KPISNNIIR 211
                  L P I         L   +   + +   ++   +      T    P    ++R
Sbjct: 356 AFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR 415

Query: 212 LS-PALNITEQELREGLDIIINTI 234
           L+ P    T+  +   ++   +  
Sbjct: 416 LTIPRATYTQTHMDFIIEAFKHVK 439

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.7 bits (148), Expect = 9e-12
 Identities = 24/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
            P      +E     +G  V     +K++  +  ++ +    D  +         + +  
Sbjct: 126 FPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE 185

Query: 79  EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
                D V+   +        S V+ D + +            G        A   + + 
Sbjct: 186 YAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALT 245

Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
              + ++  ++       +L+          V+   ++  +  D   +  +     ++++
Sbjct: 246 KMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVI--LRTDNLKVNAHGFIEALRNS 303

Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
           G++   +S+  IRL    +++  ++ E L+I 
Sbjct: 304 GVLANAVSDTEIRLVTHKDVSRNDIEEALNIF 335

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 43/265 (16%), Positives = 69/265 (26%), Gaps = 42/265 (15%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT------GLGRTGK 72
             NI A +       AG        LK+V  +  Q+ +  + D  +          R  K
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239

Query: 73  LLAIHYEDVRPDIVILGKALS-----GGLYPISAVLAD-------DEVMGTLVPGTHGST 120
                 ++V  D+     AL+       L  I  ++A               VP     T
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299

Query: 121 YGGNPLACKLAMTALD-VILEENMIENAYKMGEIFRSELRSRLS---------------- 163
           YGG       AM        EE  +       +     LR                    
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCK 359

Query: 164 ---PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT---KPISNNIIRLS-PAL 216
              P I         +   +  +S +   ++   +      T   K      +RL+    
Sbjct: 360 KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419

Query: 217 NITEQELREGLDIIINTINTMAAKK 241
             T   +    D +I      A  K
Sbjct: 420 VYTNDHMDYIADALIGLKEKFATLK 444

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 24/216 (11%), Positives = 64/216 (29%), Gaps = 10/216 (4%)

Query: 19  NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI 76
                   V   Q      +     ++ +  +C   ++    D  +    L   G   A 
Sbjct: 132 VHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAE 191

Query: 77  HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 136
                  D +  G   +G L   + VL +  +   +      + +  + +        +D
Sbjct: 192 MTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRF--LSAQID 249

Query: 137 VILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIK 194
             L +++     +        L   L     +  +   +  +    LD ++++     + 
Sbjct: 250 AYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSAMIDA----LL 305

Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
               G        N++R   +   T +++   L+ +
Sbjct: 306 KAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 11/225 (4%)

Query: 14  AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 73
            +    P   A +V       GAV P +  L+ +  L  +++   ++DE+   L   G+ 
Sbjct: 157 VRRAITPRTKALVVNSPNNPTGAVYPKE-VLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215

Query: 74  LAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVP-GTHGSTYGGNPLACKL 130
            +         + +    KA +   + I       EV+  +       +T          
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWAT 275

Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIV-LDKSILEVY 189
                +       +E A +     R  L   L+   +  VR  G    ++       +  
Sbjct: 276 LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEV 335

Query: 190 DVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 230
               ++ +AG+   P +       +RLS A +  E+ LR+ L+  
Sbjct: 336 RAAERLLEAGVAVVPGTDFAAFGHVRLSYATS--EENLRKALERF 378

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.94
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.94
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.94
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.93
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.92
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.91
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.91
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.9
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.9
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.9
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.89
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.89
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.89
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.89
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.88
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.87
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.87
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.86
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.85
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.85
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.84
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.83
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.83
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.83
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.82
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.81
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.8
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.76
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.76
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.74
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.74
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.74
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.73
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.73
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.72
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.7
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.7
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.69
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.67
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.67
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.66
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.64
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.63
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.62
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.62
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.61
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.59
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.59
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.58
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.52
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.49
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.4
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.4
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.38
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.36
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.35
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.35
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.33
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.32
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.24
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.23
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.22
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.21
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.21
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.21
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.2
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.19
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.1
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.09
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.08
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.07
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.07
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.06
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.01
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.01
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.95
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.89
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.87

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-42  Score=291.74  Aligned_cols=234  Identities=57%  Similarity=0.961  Sum_probs=215.9

Q ss_pred             ccccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548           2 SLQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE   79 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~   79 (242)
                      ..+..+|+||+++  +.+.++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++
T Consensus       167 ~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~  246 (404)
T d2byla1         167 PGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE  246 (404)
T ss_dssp             TTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             CCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhc
Confidence            3466789999999  67778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      |+.||+++++|+++||++|+|.+++++++++.+.+..+++||++||++++++.++|+.++++++.++.+++.+++++.| 
T Consensus       247 gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l-  325 (404)
T d2byla1         247 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNEL-  325 (404)
T ss_dssp             TCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-
T ss_pred             CCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHH-
Confidence            9999999999999988789999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++.......+++.|+++.+.+.+.. .....+..+|+++|+++.+.+.+.+|++|++..|++|+++++++|++++.+
T Consensus       326 ~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         326 MKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             HTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HhhccccceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            77766566677899999999886542 457789999999999999887889999999999999999999999999875

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=5e-41  Score=283.64  Aligned_cols=235  Identities=51%  Similarity=0.896  Sum_probs=213.8

Q ss_pred             cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .+..+|+++.+.  ..+.++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..+++++++
T Consensus       166 ~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~g  245 (404)
T d1z7da1         166 QFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN  245 (404)
T ss_dssp             CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred             cccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccC
Confidence            456788999888  556788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +.||++++||++++|++++|.+++++++++.+.+..+++||++||++++++.++++.++++++.++..++.+.+++.+.+
T Consensus       246 v~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         246 VKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHH
Confidence            99999999999998768999999999999999999999999999999999999999998888999999999988888844


Q ss_pred             hcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         161 RLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       161 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      .+.. ..+..+.+.|.++.+++..+......+.+.|+++|+++.+.+++.|||+|++.+|++++++++++|+++++++
T Consensus       326 ~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         326 ELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             HHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence            4442 4566788999999999987645567789999999999999888999999999999999999999999999875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.9e-40  Score=278.29  Aligned_cols=229  Identities=29%  Similarity=0.483  Sum_probs=211.6

Q ss_pred             ccccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548           2 SLQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         2 ~~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      .++..+||||++. +...++++++|++||+++++|.++++++|+++|+++|++||+++|+||+++|||++|..+++++++
T Consensus       157 ~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~  236 (387)
T d1vefa1         157 EPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG  236 (387)
T ss_dssp             SCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred             CCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCC
Confidence            4677899999999 555577999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +.||+++++|++++| ++++.+.+.++.++.+.+..+++||++||++++++.++++.++++++.++++++.+++++.| +
T Consensus       237 v~PDi~~~gK~l~gG-~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L-~  314 (387)
T d1vefa1         237 IVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL-R  314 (387)
T ss_dssp             CCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred             cCCceeeecccCCCC-ccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHH-H
Confidence            999999999999999 79999999999999999999999999999999999999999998889999999999999999 7


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .+.......+.+.|.++.+++.++  ....+.+.++++|+++.+.+++.+|++|++.+|++|++++++++++++
T Consensus       315 ~l~~~~v~~vrg~Gl~~~ie~~~~--~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         315 AIPSPKIREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             TSCCTTEEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCceEEEeecceEEEEEEeCC--chHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            776555667888999999999875  566788888999999988888999999999999999999999999886

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-38  Score=267.98  Aligned_cols=219  Identities=33%  Similarity=0.631  Sum_probs=199.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .+++++|++||+++++|.++|+++|++.|+++|++||+++|+||+++||+++|..++++++|+.||++++||++++| +|
T Consensus       196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG-~P  274 (425)
T d1sffa_         196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FP  274 (425)
T ss_dssp             GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTS-SC
T ss_pred             ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCC-cc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999 79


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-C-CCCCCeEeeecee
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-S-PDIVPVVRGKGLL  176 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l-~-~~~~~~~~~~~~~  176 (242)
                      +|.+++++++++.+.+..+++||++||+++++++++|+.++++++.++++++.+++++.| +++ . ......+.+.|.+
T Consensus       275 ~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l-~~~~~~~~~v~~vrg~Gl~  353 (425)
T d1sffa_         275 LAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGL-LAIAEKHPEIGDVRGLGAM  353 (425)
T ss_dssp             CEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHTCTTEEEEEEETTE
T ss_pred             eEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-hhhHhhCCceEEEEccccE
Confidence            999999999999999999999999999999999999999999999999999999999999 544 2 2456678899999


Q ss_pred             EEEEecCCc-------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +.+++..+.       .....+.++|+++|+++.+.+  .+.+|++|++.+|++||++++++++++++++++
T Consensus       354 ~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk  425 (425)
T d1sffa_         354 IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             EEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999885431       335678999999999998753  578999999999999999999999999998753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-37  Score=259.53  Aligned_cols=216  Identities=31%  Similarity=0.532  Sum_probs=195.8

Q ss_pred             CCCEEEEEEcccc-cCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          19 NPNICAFMVEPIQ-GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        19 ~~~~~~i~~e~~~-~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .++++++++||++ +.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++|++
T Consensus       202 ~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~  281 (429)
T d1s0aa_         202 RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTM  281 (429)
T ss_dssp             TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSS
T ss_pred             CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccccccccccc
Confidence            6799999999986 666777899999999999999999999999999999999999999999999999999999997768


Q ss_pred             chheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEe
Q psy6548          98 PISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVR  171 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~  171 (242)
                      ++|.+++++++++.+.+.     .+++||++||+++++++++|+.++++++..+++++.+++++.| +++. ...+..++
T Consensus       282 p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L-~~l~~~~~v~~vr  360 (429)
T d1s0aa_         282 TLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL-APARDAEMVADVR  360 (429)
T ss_dssp             CCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-GGGGGCTTEEEEE
T ss_pred             cccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHH-HHhccCCceEEEe
Confidence            999999999998876542     4678999999999999999999999999999999999999999 6664 34556788


Q ss_pred             eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.|.++.+++..+ .....+.+.|+++|+++.+. ++.+|++|++..|++||++++++|+++++++
T Consensus       361 g~Gl~~~~e~~~~-~~~~~~~~~~~~~Gl~~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         361 VLGAIGVVETTHP-VNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             EETTEEEEEESSC-BCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             ecccEEEEEecCc-ccHHHHHHHHHHCCcEEEec-CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999887 67888999999999999987 4799999999999999999999999998764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=2.1e-35  Score=250.57  Aligned_cols=230  Identities=22%  Similarity=0.324  Sum_probs=193.6

Q ss_pred             cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548           3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY   78 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~   78 (242)
                      ..+.+|++|+++  +.+.  .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|| ++|..++.++
T Consensus       177 ~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~  255 (427)
T d2gsaa_         177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK  255 (427)
T ss_dssp             TEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHH
T ss_pred             ceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHh
Confidence            346789999999  4454  4689999999999999999999999999999999999999999999999 6788888899


Q ss_pred             CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548          79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR  155 (242)
Q Consensus        79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~  155 (242)
                      +++.||+++++|+++|| +++|.+++++++++.+.+   ..+++||++||+++++++++++.++++++.++++++.++++
T Consensus       256 ~gi~PDi~~~gK~lggG-~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~  334 (427)
T d2gsaa_         256 FGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS  334 (427)
T ss_dssp             TTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHhhhhccCCC-cceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHH
Confidence            99999999999999999 899999999999998875   35778999999999999999999998889999999999999


Q ss_pred             HHHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548         156 SELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ  221 (242)
Q Consensus       156 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e  221 (242)
                      +.| +++.  ........+.+.++.+.+..+.            .....+...|+++||++.|.+..  ++.+++.+|++
T Consensus       335 ~~L-~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~--~~~~~l~~Te~  411 (427)
T d2gsaa_         335 DGL-LAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE--AGFTSLAHTEE  411 (427)
T ss_dssp             HHH-HHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS--CEECCTTCCHH
T ss_pred             HHH-HHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCc--ceeCCCCCCHH
Confidence            999 6553  2344445555666666653321            12346788899999999886443  34467999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTINTM  237 (242)
Q Consensus       222 ~i~~~~~~l~~~l~~~  237 (242)
                      ||++++++|+++++++
T Consensus       412 dId~~l~al~~al~~L  427 (427)
T d2gsaa_         412 DIDATLAAARTVMSAL  427 (427)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998753

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.2e-34  Score=247.89  Aligned_cols=210  Identities=23%  Similarity=0.370  Sum_probs=186.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEeeccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILGKALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~sK~~~~g~   96 (242)
                      .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..+.++++++  .||+++++|++++|+
T Consensus       246 ~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~  325 (461)
T d1ohwa_         246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG  325 (461)
T ss_dssp             TCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEE
T ss_pred             CCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccc
Confidence            678999999999999999999999999999999999999999999999999999999999988  499999999999763


Q ss_pred             cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC---CCCCeEeee
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP---DIVPVVRGK  173 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~~  173 (242)
                      ..     .. ..+....+..+.+||+++|+++++++++++.++++++.++++++.+++++.| +++..   .+...+++.
T Consensus       326 ~~-----~~-~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l-~~l~~~~~~~i~~vrG~  398 (461)
T d1ohwa_         326 FF-----HK-EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGL-LDLQARYPQFISRVRGR  398 (461)
T ss_dssp             EE-----EC-GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHCTTTCEEEEEE
T ss_pred             cc-----cc-cccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHH-HHHHhhCCCceEEeeee
Confidence            22     22 2333344556889999999999999999999999899999999999999999 66531   355678899


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      |.++.++++.+ ....++.+.|+++|+++.+.+.+.|||.|++..|++|+++++++|++++++
T Consensus       399 Gl~~~ie~~~~-~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         399 GTFCSFDTPDE-SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             TTEEEEECSSH-HHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEcCCH-HHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            99999999887 677889999999999999988899999999999999999999999999875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=7.8e-35  Score=247.58  Aligned_cols=218  Identities=29%  Similarity=0.493  Sum_probs=190.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP   98 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~   98 (242)
                      .++++++++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++.+++|+.||+++++|++++| ++
T Consensus       199 ~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG-~p  277 (431)
T d1zoda1         199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LP  277 (431)
T ss_dssp             CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-SS
T ss_pred             cccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc-cc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999 78


Q ss_pred             hheeEeChhhhhccCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEeeece
Q psy6548          99 ISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGL  175 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~~~  175 (242)
                      ++.++++++.++....  ..+++|++++|++++++.++++.++++++.++.+++.+++++.+.+.+. ...+..+.+.|.
T Consensus       278 ~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Gl  357 (431)
T d1zoda1         278 LAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGL  357 (431)
T ss_dssp             CEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT
T ss_pred             cceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecce
Confidence            8989898887765533  3478899999999999999999999999999999999999998833332 246667889999


Q ss_pred             eEEEEecCCc-------hhHHHHHHHHHHCCcee----ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSI-------LEVYDVCIKMKDAGLVT----KPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       176 ~~~~~~~~~~-------~~~~~~~~~l~~~gi~~----~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      ++.+++..+.       .....+.+.++++|+..    .+..++.+|++|++.+|++|+++++++|+++++++
T Consensus       358 m~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         358 LLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9998874321       34677899999999753    44567899999999999999999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.2e-26  Score=194.74  Aligned_cols=223  Identities=16%  Similarity=0.258  Sum_probs=170.3

Q ss_pred             cccccCCCChhh-hc-C-----CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcc
Q psy6548           3 LQFPVKSKQVPA-KL-K-----SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKL   73 (242)
Q Consensus         3 ~~~~~~~~d~~~-~~-~-----~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~   73 (242)
                      .+..|+|||.++ +. +     ...++.+|++|+++++.|++.|    |+++.++|++||+++|+||+|+.  ++..|.+
T Consensus       152 ~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G  227 (401)
T d1fc4a_         152 KRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRG  227 (401)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCC
T ss_pred             eEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCc
Confidence            466789999888 22 2     2457789999999999998887    99999999999999999999974  3445543


Q ss_pred             cccccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHH
Q psy6548          74 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIEN  146 (242)
Q Consensus        74 ~~~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~  146 (242)
                       ...+++.  .+|++  ++||+++|  .+.|++.+++++++.++.....  ++.+.+|....++.++++.+.. ++++++
T Consensus       228 -~~~~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~  304 (401)
T d1fc4a_         228 -SHEYCDVMGRVDIITGTLGKALGG--ASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDR  304 (401)
T ss_dssp             -HHHHTTCTTCCSEEEEESSSTTCS--SSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             -cchhccCCCCCeEEEeeccccccc--CCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHH
Confidence             3345554  35555  48899963  4578899999999888653222  2334566777777778887665 567899


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCC
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNIT  219 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t  219 (242)
                      ++++..++++.+ ...+...   ....++++.+.+.++ ..+..+.++|+++||++.+       .+...+|++++..+|
T Consensus       305 l~~~~~~~~~~l-~~~g~~~---~~~~~pIv~v~~~~~-~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT  379 (401)
T d1fc4a_         305 LWANARQFREQM-SAAGFTL---AGADHAIIPVMLGDA-VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHT  379 (401)
T ss_dssp             HHHHHHHHHHHH-HHTTCCB---CCSSSSEEEEEEECH-HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHhhh-cccCCcc---CCCCCCEEEEEECCH-HHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCC
Confidence            999999999999 6665321   122346667777766 6778899999999999863       356779999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTINTM  237 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~~~  237 (242)
                      +||||++++.|+++.+++
T Consensus       380 ~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         380 PEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.94  E-value=2.2e-26  Score=191.89  Aligned_cols=218  Identities=16%  Similarity=0.209  Sum_probs=165.1

Q ss_pred             cccccCCCChhh--hc---CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccc
Q psy6548           3 LQFPVKSKQVPA--KL---KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLA   75 (242)
Q Consensus         3 ~~~~~~~~d~~~--~~---~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~   75 (242)
                      ++..|+|||+++  +.   ..+.+..+|++|++++|.|++.|    +++|.++|++||+.+++||+|+ | +|..|.+..
T Consensus       154 ~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~  229 (396)
T d2bwna1         154 PKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA  229 (396)
T ss_dssp             CEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH
T ss_pred             CceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccch
Confidence            577899999998  22   34567889999999999999998    9999999999999999999994 4 566666543


Q ss_pred             cccCCC--CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHhc---cHHHH
Q psy6548          76 IHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE---NMIEN  146 (242)
Q Consensus        76 ~~~~~~--~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~~---~~~~~  146 (242)
                       .+++.  ..|+++  |||+||+   ..|++.+++++++.++.......|  +.+|...+++.++++.+..+   ..++.
T Consensus       230 -~~~~~~~~~di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~  305 (396)
T d2bwna1         230 -ERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA  305 (396)
T ss_dssp             -HHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             -hhcCCceeeeeeeecccccccc---cccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHH
Confidence             34444  235554  9999992   246789999999998764433334  44566777777888877643   34567


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceecc-------CCCCEEEEeccCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKP-------ISNNIIRLSPALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~-------~~~~~lR~~~~~~~  218 (242)
                      ++.+.++++..+ ..++...   ....++++.+.+.++ ..+..+++.|+ ++||.+.+       .+..++|++++..+
T Consensus       306 l~~~~~~~~~~l-~~~g~~~---~~~~spIvpv~ig~~-~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~h  380 (396)
T d2bwna1         306 QQMHAKVLKMRL-KALGMPI---IDHGSHIVPVVIGDP-VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVH  380 (396)
T ss_dssp             HHHHHHHHHHHH-HHHTCCB---CCCSSSCEEEECCCH-HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTS
T ss_pred             HHHHHHHHHHHH-HhcCCCc---CCCCCCEEEEEeCCH-HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccC
Confidence            778888999998 6665321   123467778887776 67778888866 67999863       35678999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINT  233 (242)
Q Consensus       219 t~e~i~~~~~~l~~~  233 (242)
                      |++||+++++.|+++
T Consensus       381 t~edId~l~~~L~~i  395 (396)
T d2bwna1         381 DLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999875

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.6e-26  Score=191.68  Aligned_cols=219  Identities=16%  Similarity=0.246  Sum_probs=166.4

Q ss_pred             ccccccCCCChhh--hcC--CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccc
Q psy6548           2 SLQFPVKSKQVPA--KLK--SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLA   75 (242)
Q Consensus         2 ~~~~~~~~~d~~~--~~~--~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~   75 (242)
                      ..++.|+|||+++  +.+  ..++..+|++|++++++|++.|    +++|.++|++||+++++||+|+.  +|..|.+ .
T Consensus       144 ~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G-~  218 (383)
T d1bs0a_         144 SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG-S  218 (383)
T ss_dssp             SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCC-H
T ss_pred             CcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccc-h
Confidence            3578899999999  333  2467889999999999999888    99999999999999999999963  3555554 3


Q ss_pred             cccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHH
Q psy6548          76 IHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE---NMIENAY  148 (242)
Q Consensus        76 ~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~  148 (242)
                      .++++..+++++  +||+++   ...|++.++.+.++.++....  ..+...+|...+++.++++.++..   ...+++.
T Consensus       219 ~~~~~~~~~~~~~t~~ka~g---~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~  295 (383)
T d1bs0a_         219 CWLQKVKPELLVVTFGKGFG---VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLA  295 (383)
T ss_dssp             HHHTTCCCSEEEEESSSTTS---SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHHcCCcccccccccccccc---ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            466777777666  778888   346788899888888865322  233455677777778888877653   3556777


Q ss_pred             HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHH
Q psy6548         149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQ  221 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e  221 (242)
                      ++..++++.| +.++.   ......++++.+.+.++ ..+.++.+.|+++||++.+       .+...+|++++..+|+|
T Consensus       296 ~~~~~~~~~l-~~~g~---~~~~~~s~Ii~v~~g~~-~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~e  370 (383)
T d1bs0a_         296 ALITRFRAGV-QDLPF---TLADSCSAIQPLIVGDN-SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQ  370 (383)
T ss_dssp             HHHHHHHHHH-TTSSC---EECSCCSSBCCEEEESH-HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHH
T ss_pred             HHHHHHHHHH-HhcCC---ccCCCCCCEEEEEECCH-HHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHH
Confidence            8888888888 66552   11223456666666665 6778999999999999864       35678999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINT  233 (242)
Q Consensus       222 ~i~~~~~~l~~~  233 (242)
                      |||++++.|..+
T Consensus       371 did~l~~~L~~~  382 (383)
T d1bs0a_         371 DIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=5.5e-25  Score=183.82  Aligned_cols=215  Identities=17%  Similarity=0.190  Sum_probs=151.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---   86 (242)
                      |++. +...+.+++++++.+++||+| .+.+++.+++|+++|++||++||+||+|.++...+........ ...+++   
T Consensus       153 d~~~l~~~~~~~~~~i~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~i~~~  230 (382)
T d1b5pa_         153 DPERVRRAITPRTKALVVNSPNNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV-APEHTLTVN  230 (382)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CTTTEEEEE
T ss_pred             CHHHHHHhCCCCCeEEEECCCCCCcc-hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc-CCCCEEEEe
Confidence            4555 445567888888888899999 5667899999999999999999999999987555543221111 112233   


Q ss_pred             Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-h----ccHHHHHHHHHHHHHHHHHh
Q psy6548          87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E----ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~----~~~~~~~~~~~~~l~~~l~~  160 (242)
                      ++||.|+ +| +|+||+++++++++.+.........+.+.+.+.++.+++.... .    +...+.++++++.+.+.+ +
T Consensus       231 s~SK~~~~~G-lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  308 (382)
T d1b5pa_         231 GAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGL-T  308 (382)
T ss_dssp             ESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cchhhccCcH-hheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHH-h
Confidence            3889999 89 9999999999888776543333444555555544444433211 1    223445555666666666 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ..+  +....+..|+++|+++.....+...+.+.|.++||.+.|+    ..+++|++  +..++|++++++++|+++
T Consensus       309 ~~g--~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         309 ALG--LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARV  381 (382)
T ss_dssp             HHT--CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGG
T ss_pred             hcC--CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHh
Confidence            544  2233345688999998664356788999999999999986    56899999  456889999999998775

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=8.8e-25  Score=182.78  Aligned_cols=220  Identities=15%  Similarity=0.122  Sum_probs=154.5

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccC-CCCCCEE-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYE-DVRPDIV-   86 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~-~~~~~~~-   86 (242)
                      |+++ +...+++++++++.+++||+| .+.+++.+++|+++|++|+++||+||+|.++...+... ..... +....++ 
T Consensus       148 d~~~l~~~~~~~~~~i~~~~P~NPtG-~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~  226 (388)
T d1gdea_         148 NVDELKKYVTDKTRALIINSPCNPTG-AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTIT  226 (388)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEE
T ss_pred             CHHHHHHhCccCCeEEEECCCcCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEE
Confidence            3455 444466789999999999999 55678899999999999999999999998874443321 11122 2222333 


Q ss_pred             --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy6548          87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~  159 (242)
                        +|||.|+ +| +|+||+++++++++.+...........+.+.+.++.++++..+.    ......+++....+.+.| 
T Consensus       227 ~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-  304 (388)
T d1gdea_         227 VNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRL-  304 (388)
T ss_dssp             EEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EeCChhhccCcc-ccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhh-
Confidence              3899998 89 99999999998887776644455556666666665555542211    223444555566666666 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      ....  .....+..|+++|++++....+..++++.|+ +.||.+.|+      +++++|++  +..++|++++++++|++
T Consensus       305 ~~~~--~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~  380 (388)
T d1gdea_         305 NEMG--LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMER  380 (388)
T ss_dssp             HHTT--CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHH
T ss_pred             hhcc--ccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence            4433  2233355678999998764356788888876 569999875      46889999  45688999999999999


Q ss_pred             HHHHH
Q psy6548         233 TINTM  237 (242)
Q Consensus       233 ~l~~~  237 (242)
                      ++++.
T Consensus       381 ~l~e~  385 (388)
T d1gdea_         381 VLKER  385 (388)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98874

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.91  E-value=2.2e-24  Score=180.44  Aligned_cols=221  Identities=11%  Similarity=0.111  Sum_probs=155.7

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCC-----CCC
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYED-----VRP   83 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~-----~~~   83 (242)
                      |+++ +...+++++++++..++||+| .+.+.+.+++|+++|++||+++|+||+|.++...+... ......     ...
T Consensus       152 d~~~l~~~~~~~~~~~~~~~P~NPTG-~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i  230 (388)
T d1j32a_         152 SPEQIRQAITPKTKLLVFNTPSNPTG-MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSV  230 (388)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEE
T ss_pred             CHHHHHHhCCCCCeEEEECCCCCCCC-cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccccccee
Confidence            3444 434456788888888899999 55677899999999999999999999997764433221 111110     011


Q ss_pred             CEEEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh
Q psy6548          84 DIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        84 ~~~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~  160 (242)
                      -+.++||.|+ +| +|+||+++++++++.+...........+..++.++...++..++  ++..+.++++++.+.+.| +
T Consensus       231 ~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  308 (388)
T d1j32a_         231 VCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDAL-N  308 (388)
T ss_dssp             EEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EecCChhhhhcch-hHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            1233899999 89 99999999999888776543334455667777666555542211  234566777777788888 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      .++ +.....+..|+++|++++....+..++++.|+ ++||.+.|+    .++++|+++  ..++|++++++++|+++++
T Consensus       309 ~~~-g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~l~  385 (388)
T d1j32a_         309 AMP-GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY--ATDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             TCT-TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC--CSCHHHHHHHHHHHHHHHH
T ss_pred             hCC-CCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--eCCHHHHHHHHHHHHHHHH
Confidence            553 23333455688899888764356677887776 569999886    578999994  5689999999999999998


Q ss_pred             HH
Q psy6548         236 TM  237 (242)
Q Consensus       236 ~~  237 (242)
                      ++
T Consensus       386 ~l  387 (388)
T d1j32a_         386 GI  387 (388)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.3e-23  Score=169.87  Aligned_cols=222  Identities=12%  Similarity=0.116  Sum_probs=146.3

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~   87 (242)
                      |++.  +.+.+++++++++.+++|++|. ..+.+.+++++++|++||+++|+||+|.++...+... ...... ..+.++
T Consensus       121 d~~~~~~~~~~~~~~~i~l~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~  198 (361)
T d1d2fa_         121 DMGKLEAVLAKPECKIMLLCSPQNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWAL  198 (361)
T ss_dssp             CHHHHHHHHTSTTEEEEEEESSCTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEE
T ss_pred             ccccchhhcccCCceeEEeccccccccc-ccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-cccccc
Confidence            4555  5566789999999999999995 5556789999999999999999999998764333221 111111 223333


Q ss_pred             ---eecccc-CCccchheeEeC-hhhhhccCCC-C-CCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          88 ---LGKALS-GGLYPISAVLAD-DEVMGTLVPG-T-HGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ---~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~-~-~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                         +||.++ +| +|+||+..+ +...+..... . .....+.+..++.++..+++....  +.....++++++.+.+.+
T Consensus       199 ~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  277 (361)
T d1d2fa_         199 LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKM  277 (361)
T ss_dssp             EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccc-ccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHh
Confidence               789998 78 999998655 3222222111 1 111222334455444444442221  234566666677777777


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      .+.+. ......+..|+++|++++....+..+++++|+++ ||.+.|+      +.+++|++  +..++|++++++++|+
T Consensus       278 ~~~~~-~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~  354 (361)
T d1d2fa_         278 NAAFP-ELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLI  354 (361)
T ss_dssp             HHHCS-SCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHH
T ss_pred             hhhcc-cccccccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHH
Confidence            33333 2323334557888998864336788999998765 9999765      46789999  4568899999999999


Q ss_pred             HHHHHHh
Q psy6548         232 NTINTMA  238 (242)
Q Consensus       232 ~~l~~~~  238 (242)
                      +++++++
T Consensus       355 ~~l~~lr  361 (361)
T d1d2fa_         355 NAIRAVR  361 (361)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998863

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.90  E-value=1.5e-23  Score=173.36  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=147.5

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeeccc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKAL   92 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~   92 (242)
                      .....+++++++++++|++|. ..+.+.+++|+++|++|++++|+||+|.+|...+.... ......++++   ++||++
T Consensus       139 ~~~~~~~~~v~l~nP~NPtG~-~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~  216 (355)
T d1lc5a_         139 EALTPDLDCLFLCTPNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI-PALKDNPHIWVLRSLTKFY  216 (355)
T ss_dssp             HHCCTTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG-GGCTTCTTEEEEEESTTTT
T ss_pred             eccccccceeeeecccCcccc-cchhhhhhhhhhhccccccccccccceeeeeeeccccc-ccccccccceeeccccccc
Confidence            344667889999999999996 55778999999999999999999999987754443222 1122223333   389999


Q ss_pred             c-CCccchheeEeChh-hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          93 S-GGLYPISAVLADDE-VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      + +| +|+||++++++ +.+.++.  ...+++.+.+++.++.++++.... .+..+.+++.++++.+.| +++..  ...
T Consensus       217 ~l~G-lR~G~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~--~~~  290 (355)
T d1lc5a_         217 AIPG-LRLGYLVNSDDAAMARMRR--QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL-CQLPL--LTV  290 (355)
T ss_dssp             TCTT-TCCEEEECCCHHHHHHHHH--HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH-HTSTT--EEE
T ss_pred             cccc-ccccceeccchhhhHHHHh--hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHH-hhcCC--cEE
Confidence            9 99 99999998754 4454443  334567788888887777653221 234566667777777777 55542  222


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .++.++++|+.++.+   ..+++++|.++||.++++      +++++|+++   .+++++++++++|++++
T Consensus       291 ~p~~~~f~~~~~~~~---~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         291 YPGRANYLLLRCERE---DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVL  355 (355)
T ss_dssp             CCCSSSEEEEEESCT---TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEEECCCC---HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CCHHHHHHHHHHHHHhC
Confidence            345678899988764   467889999999999764      358999993   38999999999998864

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.90  E-value=3.8e-23  Score=173.21  Aligned_cols=219  Identities=13%  Similarity=0.137  Sum_probs=146.3

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccC--CCCCCEE---Ee
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYE--DVRPDIV---IL   88 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~--~~~~~~~---~~   88 (242)
                      ....+++++++++.+++||+| .+.+++.+++|+++|++|+++||+||+|.++...+.... ....  +.....+   ++
T Consensus       158 ~~~~~~~~~~i~l~~P~NPTG-~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  236 (394)
T d1c7na_         158 KLSKDKNNKALLFCSPHNPVG-RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAP  236 (394)
T ss_dssp             HHHTCTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECS
T ss_pred             hhhccccceEEEecccccccc-eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccc
Confidence            334567899999999999999 466778899999999999999999999988643332211 1111  1111222   38


Q ss_pred             ecccc-CCccchheeEeCh-hhhhccCCCCCCCCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548          89 GKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYG-GNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS  163 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~-~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~  163 (242)
                      ||.++ +| +|+||+++++ .+.+.+.......... .+...++++....+....  ++..+..+++++.+++.+ +...
T Consensus       237 SK~~~~~G-~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~  314 (394)
T d1c7na_         237 SKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFF-EVNH  314 (394)
T ss_dssp             HHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHC
T ss_pred             cccccccc-cccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhh-hccc
Confidence            89998 88 9999988764 4555544321222212 222233333222222111  345566667777777777 4433


Q ss_pred             CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ..+....+..++++|++++..+.+..+++++|+++ ||.+.|+      +++++|++  +..++|++++++++|++++++
T Consensus       315 ~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~~  392 (394)
T d1c7na_         315 PEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALKD  392 (394)
T ss_dssp             TTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             cceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHHh
Confidence            33333344567889999876435788999998866 9999874      46799999  456889999999999999998


Q ss_pred             Hh
Q psy6548         237 MA  238 (242)
Q Consensus       237 ~~  238 (242)
                      ++
T Consensus       393 Lk  394 (394)
T d1c7na_         393 LK  394 (394)
T ss_dssp             HC
T ss_pred             cC
Confidence            64

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.90  E-value=3.7e-23  Score=173.67  Aligned_cols=217  Identities=18%  Similarity=0.209  Sum_probs=153.5

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC---EEEeeccccC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD---IVILGKALSG   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~---~~~~sK~~~~   94 (242)
                      +..+.++++.+++|++| .+.+.+.+++|+++|++||++||+||+|.++...+... .....+-...   +.++||.+++
T Consensus       169 ~~~~~~~~~~~p~NPtG-~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  247 (403)
T d1wsta1         169 KRVKIVYTVSTFQNPAG-VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAP  247 (403)
T ss_dssp             CCCCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCG
T ss_pred             ccccccccccccCCCCC-ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecC
Confidence            55677788888999999 56677889999999999999999999998875554322 1111111112   3338899998


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSPDIVPVV  170 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~  170 (242)
                      | +|+||+++++++++.+...........+...+.+..+.+.....    +...+.+++.++.+.+.|.+.++..+....
T Consensus       248 G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  326 (403)
T d1wsta1         248 G-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTK  326 (403)
T ss_dssp             G-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred             c-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeC
Confidence            9 99999999999888776533333344555555443333332211    234566667777777878444443344444


Q ss_pred             eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      +..|+++|++++.. .+.+.+.+.|.++||.+.|+        +++++|++++. .+++++++++++|++++++..+
T Consensus       327 p~gg~~~~~~~~~~-~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k  401 (403)
T d1wsta1         327 PEGGMFVRVTLPEG-IDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEEMK  401 (403)
T ss_dssp             CSBSSEEEEECCTT-CCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEECCCC-CCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            56789999999886 67788999999999999775        35799999543 4889999999999999987443

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.89  E-value=1.4e-22  Score=170.94  Aligned_cols=213  Identities=17%  Similarity=0.208  Sum_probs=152.2

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCCEE---Eeec
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPDIV---ILGK   90 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~---~~sK   90 (242)
                      .....+++++++.+++||+|. +.+.+.+++|+++|++||+++|.||+|.++...+...  .....+....++   ++||
T Consensus       166 ~~~~~~~~~~~i~~p~NPtG~-~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK  244 (418)
T d2r5ea1         166 ALFNEKTKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGK  244 (418)
T ss_dssp             HHCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred             hhhhccccceecCCcCccccc-cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCc
Confidence            345678999999999999995 5577889999999999999999999998764333211  112222223333   3889


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----c----cHHHHHHHHHHHHHHHHHh
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----E----NMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~----~~~~~~~~~~~~l~~~l~~  160 (242)
                      .++ +| +|+||+++++++++.+.......+++.+.+.+.++.+.+.....     +    ...+.++++++.+.+.| +
T Consensus       245 ~~~~pG-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~  322 (418)
T d2r5ea1         245 TFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL-A  322 (418)
T ss_dssp             HTTCGG-GCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccCCC-cccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhH-h
Confidence            998 89 99999999999888876544445566676766655544432211     1    23455666777777778 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCC-----------chhHHHHHHHHHHC-CceeccC-----------CCCEEEEeccCc
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKS-----------ILEVYDVCIKMKDA-GLVTKPI-----------SNNIIRLSPALN  217 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~-gi~~~~~-----------~~~~lR~~~~~~  217 (242)
                      +++  +....+..|+++|++++..           ..+..+++++|.++ ||.+.|+           +.+++|++  +.
T Consensus       323 ~~g--~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis--~~  398 (418)
T d2r5ea1         323 EVG--MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC--FF  398 (418)
T ss_dssp             HTT--CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEE--CC
T ss_pred             hcC--CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEE--ec
Confidence            554  3334466789999987631           14677888888764 9999885           24789999  45


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy6548         218 ITEQELREGLDIIINTIN  235 (242)
Q Consensus       218 ~t~e~i~~~~~~l~~~l~  235 (242)
                      .++|++++++++|++.+.
T Consensus       399 ~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         399 KKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHc
Confidence            689999999999998764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.9e-22  Score=168.59  Aligned_cols=216  Identities=12%  Similarity=0.114  Sum_probs=150.0

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      .....++++++++.+++|++|. ..+.+.+++|+++|++|+++||.||+|.++...+.............+++  +||.+
T Consensus       153 ~~~~~~~~~~~~l~nP~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~  231 (389)
T d2gb3a1         153 ESFINERTKGIVLSNPCNPTGV-VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF  231 (389)
T ss_dssp             GGGCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT
T ss_pred             hhhcccCccEEEeCCCCccccc-cchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccc
Confidence            3445678999999999999995 55788999999999999999999999987755544322111111222333  67988


Q ss_pred             c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPV  169 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  169 (242)
                      + +| +|+||++++++.+...........++.+++.+.++.+.+...+.  +...+.++++++.+.+.| ++++.. ...
T Consensus       232 ~~~G-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~~~-~~~  308 (389)
T d2gb3a1         232 SACG-ARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKL-EEHGLK-RFT  308 (389)
T ss_dssp             TCGG-GCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HHTTCC-CBC
T ss_pred             cCcc-cceeeeeccchhHHHHHhhhhhccccccccccccccccccccchhcccccccccccchhhhhhh-hhhccc-ccc
Confidence            8 88 99999998765433222211223445566666655554432111  345677778888888888 666521 223


Q ss_pred             EeeeceeEEEEecCCchhHHHHHHHHHHC------CceeccC---------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         170 VRGKGLLNAIVLDKSILEVYDVCIKMKDA------GLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      .+..|+++|++++..  +..++++.|+++      |+.+.|+         +.+++|++  +..+++++++++++|++++
T Consensus       309 ~p~~g~~~~~~lp~~--~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~l  384 (389)
T d2gb3a1         309 KPSGAFYITAELPVE--DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEGL  384 (389)
T ss_dssp             CCSBSSEEEEECSSS--CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCCCC--CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHH
Confidence            456789999999874  678899988765      6666553         25789999  4578999999999999999


Q ss_pred             HHHh
Q psy6548         235 NTMA  238 (242)
Q Consensus       235 ~~~~  238 (242)
                      ++.+
T Consensus       385 k~f~  388 (389)
T d2gb3a1         385 KMFC  388 (389)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9865

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.3e-23  Score=175.96  Aligned_cols=219  Identities=17%  Similarity=0.232  Sum_probs=153.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEE---EeeccccC
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIV---ILGKALSG   94 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~---~~sK~~~~   94 (242)
                      ++.+.++++.+++|++| ...+.+.+++++++|++|++++|+||+|.++...+.... .........++   +++|.+++
T Consensus       181 ~~~~~~~~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~  259 (420)
T d1vp4a_         181 KQVKFIYVVSNFHNPAG-VTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAP  259 (420)
T ss_dssp             GGEEEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCG
T ss_pred             cccceeeEecCCCCccc-hhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccccc
Confidence            34455666777899999 556788999999999999999999999988754443211 11111111222   26677778


Q ss_pred             CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhcCC--CCCC
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSP--DIVP  168 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l~~--~~~~  168 (242)
                      | +|+||+++++++++.+.+.....+.+.+.+.++++...++....    .+..+.+++.++.+.+.|++.+..  ++..
T Consensus       260 G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~  338 (420)
T d1vp4a_         260 G-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW  338 (420)
T ss_dssp             G-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEE
T ss_pred             c-cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEE
Confidence            9 99999999999998887643444445566666555444442111    234566777778888888444432  2222


Q ss_pred             eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                      ..+..|+++|+++++. .+..++.+.|.++||.+.|+        +.+++|+++.. .++|++++++++|++++++..++
T Consensus       339 ~~p~gg~f~~~~~~~~-~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~-~~~e~l~~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         339 VKSEGGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKE  416 (420)
T ss_dssp             CCCSBSSEEEEECCTT-CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCceEEEEEECCCC-CCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHhhHh
Confidence            3355678999999875 57778899999999999875        25689999542 47899999999999999998776


Q ss_pred             c
Q psy6548         241 K  241 (242)
Q Consensus       241 ~  241 (242)
                      +
T Consensus       417 ~  417 (420)
T d1vp4a_         417 K  417 (420)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.4e-22  Score=168.65  Aligned_cols=208  Identities=17%  Similarity=0.206  Sum_probs=146.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEE---Eeec
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIV---ILGK   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~---~~sK   90 (242)
                      +.....+++++++.+++|++|. +.+.+.+++|+++|++|+++||+||+|.++...+... .....+....++   ++||
T Consensus       155 ~~~~~~~~~~~~l~nP~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  233 (375)
T d1o4sa_         155 EGLLVGKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSK  233 (375)
T ss_dssp             HHTCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTT
T ss_pred             HHhhccCccEEEEeCCCCCccC-CCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechh
Confidence            5566778999999999999995 5577899999999999999999999997654333221 111122222333   3899


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      .++ +| +|+||++++++.++.+.......+...+...+..+..   ..+.  ....+.++++++.+.+.| +.++  +.
T Consensus       234 ~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~l-~~~g--~~  306 (375)
T d1o4sa_         234 SHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALK---ALEVDNSYMVQTFKERKNFVVERL-KKMG--VK  306 (375)
T ss_dssp             TTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHH---HTTCCCHHHHHHHHHHHHHHHHHH-HHTT--CC
T ss_pred             hccCCc-cccccccccccchhhhhhhhccccccccccchhhhhh---hcccchhhhHHHHHHHHHHHHHHH-HhcC--ce
Confidence            999 89 9999999999888777653333333444444433322   2222  235667778888888888 6665  22


Q ss_pred             CeEeeeceeEEEEecCCchhHHHHHHH-HHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSILEVYDVCIK-MKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ...+..|+++|++++.+  + .+++.. |.++||.+.|+    .++++|++  +..++|++++++++|+++++
T Consensus       307 ~~~p~gg~f~~~~~~~~--~-~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         307 FVEPEGAFYLFFKVRGD--D-VKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             CCCCSBSSEEEEECSSC--H-HHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred             EecCCccEEEEEECCCC--H-HHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence            23345688999998774  3 444555 55679999885    47899999  45689999999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.88  E-value=1.4e-22  Score=169.85  Aligned_cols=214  Identities=12%  Similarity=0.095  Sum_probs=142.0

Q ss_pred             CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc
Q psy6548          17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS   93 (242)
Q Consensus        17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~   93 (242)
                      ...++++++++.+++||+| .+.+++.+++|+++|++|++++|.||+|.++...+.............++   +|||.++
T Consensus       162 ~~~~~~~~v~l~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         162 KITDRTKAIAVINPNNPTG-ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF  240 (395)
T ss_dssp             HCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             hhcccccEEEecCCCCCcc-chhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcc
Confidence            3456788888888899999 56677889999999999999999999998754333222111111122333   3899999


Q ss_pred             -CCccchheeEeC--hhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548          94 -GGLYPISAVLAD--DEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPD  165 (242)
Q Consensus        94 -~g~~~~g~~~~~--~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~  165 (242)
                       +| +|+||++..  ...+..+...   .....+..+.+++.++..+++...+  ++..+.++++++.+.+.| +.++. 
T Consensus       241 ~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~-  317 (395)
T d1xi9a_         241 ATG-WRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRL-NEIPG-  317 (395)
T ss_dssp             CGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH-HTSTT-
T ss_pred             cch-hhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-
Confidence             89 999997643  2222222211   1122334566677666655542211  234566777888888888 66542 


Q ss_pred             CCCeEeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         166 IVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      .....+..|+++|++++... .+..+++..|+ ++||.+.|+      +.+++|++  +..++|++++++++|++++++
T Consensus       318 ~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         318 ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             ceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence            11223445888998886531 34556666655 569999875      36789999  557899999999999998875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=5.4e-22  Score=164.60  Aligned_cols=212  Identities=17%  Similarity=0.207  Sum_probs=148.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC--EEE
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD--IVI   87 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~~   87 (242)
                      |++. +...++.++++++.+++|++| ...+.+.+++|+++|++||+++|+||+|..+.................  +.+
T Consensus       141 d~~~l~~~~~~~~~~i~~~~p~NPtG-~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (368)
T d1v2da_         141 DLSALEKALTPRTRALLLNTPMNPTG-LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGS  219 (368)
T ss_dssp             CHHHHHTTCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEE
T ss_pred             CHHHHHHhhccCceEEEEcCCCCccc-ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeec
Confidence            3444 444456788888888899999 566778899999999999999999999975422222111111111112  334


Q ss_pred             eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhhc
Q psy6548          88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELRSRL  162 (242)
Q Consensus        88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~~~l  162 (242)
                      +||.++ +| +|+||+.+++++++.+.........+.+.+.+.++.+++......    ...+.++++++++.+.| +++
T Consensus       220 ~sk~~~~~G-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~  297 (368)
T d1v2da_         220 AGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL-RAM  297 (368)
T ss_dssp             HHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred             ccccccccc-cccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhH-Hhc
Confidence            778777 78 999999999988887776555556677777777766666655443    23455667777788888 655


Q ss_pred             CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +  +....+..++++|++++..  +..   +.|.++||.+.|+        +++++|++  +..++|++++++++|++++
T Consensus       298 g--~~~~~p~g~~~~~~~l~~~--~~~---~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         298 G--LRVYVPEGTYFLMAELPGW--DAF---RLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             T--CCEECCSBSSEEEEECTTC--CHH---HHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             C--cEEecCCceeEEEEeCCcc--HHH---HHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            4  2223344578999999864  443   3467899999864        36789999  4578999999999998864

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=164.87  Aligned_cols=212  Identities=17%  Similarity=0.174  Sum_probs=149.7

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCCCCEEE---eec
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVRPDIVI---LGK   90 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~~~~~~---~sK   90 (242)
                      ....++++++++.+++|++| ...+++.+++|+++|++|++++|+||+|.++.+.+... .. ...+..+.+++   +||
T Consensus       166 ~~~~~~~~~i~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK  244 (418)
T d1w7la_         166 GKFTSRTKALVLNTPNNPLG-KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGK  244 (418)
T ss_dssp             HHCCTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred             ccccccccceeccCcCCccc-ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCc
Confidence            34467889999999999999 56677889999999999999999999998875444321 11 11122233333   889


Q ss_pred             ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----c----cHHHHHHHHHHHHHHHHHh
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----E----NMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~----~~~~~~~~~~~~l~~~l~~  160 (242)
                      .++ +| +|+||+++++++++.+.......+++.+.+++.++.+++.....     .    ...+.++++++.+.+.| +
T Consensus       245 ~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~  322 (418)
T d1w7la_         245 TFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL-Q  322 (418)
T ss_dssp             HTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh-h
Confidence            988 89 99999999999888877654445566777777776666553321     1    23455666666677777 5


Q ss_pred             hcCCCCCCeEeeeceeEEEEecCC------------chhHHHHHHHHH-HCCceeccC-----------CCCEEEEeccC
Q psy6548         161 RLSPDIVPVVRGKGLLNAIVLDKS------------ILEVYDVCIKMK-DAGLVTKPI-----------SNNIIRLSPAL  216 (242)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~-~~gi~~~~~-----------~~~~lR~~~~~  216 (242)
                      .++  +....+..|+++|++++..            ..+..+++++|+ ++||.+.|+           +.+++|++  +
T Consensus       323 ~~g--~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~  398 (418)
T d1w7la_         323 SVG--LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--F  398 (418)
T ss_dssp             TTT--CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--C
T ss_pred             hcC--CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--E
Confidence            543  3333455688999987531            134567777765 569999765           25789999  5


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy6548         217 NITEQELREGLDIIINTI  234 (242)
Q Consensus       217 ~~t~e~i~~~~~~l~~~l  234 (242)
                      ..+++++++++++|++..
T Consensus       399 ~~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         399 VKDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            578999999999998764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=8.1e-21  Score=155.54  Aligned_cols=208  Identities=12%  Similarity=0.071  Sum_probs=144.5

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      ++.+|.++-.. ......+++++++.+++|++|.+.+ ++.   +.++ .++++++|+||+|.++..........   ..
T Consensus       120 ~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s-~~~---l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~---~~  191 (334)
T d2f8ja1         120 FLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFE-REE---IERI-LKTGAFVALDEAYYEFHGESYVDFLK---KY  191 (334)
T ss_dssp             EEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCC-HHH---HHHH-HTTTCEEEEECTTGGGTCCCCGGGGG---TC
T ss_pred             cccccccccccccccccccceEEEecccccccceeec-HHH---hhcc-ccceeEEeecccchhhcccccccccc---cC
Confidence            45566653222 3344567788888888999997665 333   4443 56899999999996553322221111   12


Q ss_pred             CCEE---Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Q psy6548          83 PDIV---ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~---~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~  157 (242)
                      +.++   ++||.++ +| +|+||+++++++++.+...  ..++..+..++.++.+.++..+. +...+.+++.++.+.+.
T Consensus       192 ~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~i~~l~~~--~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~  268 (334)
T d2f8ja1         192 ENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSA  268 (334)
T ss_dssp             SSEEEEEESTTTSSCTT-TCEEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCccccchhh-hhhhhcccchHHHHHHHHh--hcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHH
Confidence            2332   3889999 89 9999999999999888763  23455677777777666654322 34567778888888888


Q ss_pred             HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      | ++++-   ...++.|.++|+.++.  .+.+++.+.|.++||.+++. ++++|++.   .+.||+++++++|++
T Consensus       269 L-~~~g~---~~~~~~g~f~~~~~~~--~~~~~~~~~L~~~GI~vr~~-~~~vRis~---g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         269 L-REMGY---RITDSRGNFVFVFMEK--EEKERLLEHLRTKNVAVRSF-REGVRITI---GKREENDMILRELEV  333 (334)
T ss_dssp             H-HHHTC---EECCCCSSEEEEECCH--HHHHHHHHHHHHTTEECEEE-TTEEEEEC---CCHHHHHHHHHHHHH
T ss_pred             H-HHCCC---eECCCCceEEEEECCC--CCHHHHHHHHHHCCCEECCC-CCeEEEEc---CCHHHHHHHHHHHhc
Confidence            8 66652   1224456678887766  47889999999999999876 78999993   488899999988875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.85  E-value=4.4e-21  Score=161.40  Aligned_cols=217  Identities=14%  Similarity=0.099  Sum_probs=140.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-ccc-c---cCCCCCCEEE--
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAI-H---YEDVRPDIVI--   87 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~-~---~~~~~~~~~~--   87 (242)
                      +.....+++++++.+++|++|. +.+.+.+++|+++|++|+++||+||+|.++...+.. ... .   ........++  
T Consensus       168 ~~~~~~~~~~~~l~np~NPtG~-~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
T d1bw0a_         168 RRLKDDKTKLLIVTNPSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILG  246 (412)
T ss_dssp             HHHCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEE
T ss_pred             Hhhhhccccccccccccccccc-cchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccccc
Confidence            4455778999999999999995 557889999999999999999999999887555432 111 1   1111222332  


Q ss_pred             -eecccc-CCccchheeEeChhhhhc------cCCCCCCCCCCCCHHHHHHHHHHHH-HHHh--ccHHHHHHHHHHHHHH
Q psy6548          88 -LGKALS-GGLYPISAVLADDEVMGT------LVPGTHGSTYGGNPLACKLAMTALD-VILE--ENMIENAYKMGEIFRS  156 (242)
Q Consensus        88 -~sK~~~-~g~~~~g~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~a~a~l~-~~~~--~~~~~~~~~~~~~l~~  156 (242)
                       +||.++ +| +|+||+++++.....      .... ...+.+.++..++.+.+.+. ..++  .+..+.++++++.+.+
T Consensus       247 s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  324 (412)
T d1bw0a_         247 GTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRV-GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYN  324 (412)
T ss_dssp             ESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHH-HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCccCccCC-CCcccccccchhhcchhhhhhhccc-cccccCCchhhhhhcccccccccccccccccchhHHHHHHHHH
Confidence             789999 89 999999886543221      1110 11122233444433332221 1111  2344556666666666


Q ss_pred             HHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHHHH-CCceeccC----CCCEEEEeccCcCCHHHHHHHH
Q psy6548         157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKMKD-AGLVTKPI----SNNIIRLSPALNITEQELREGL  227 (242)
Q Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~-~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~  227 (242)
                      .| .+.. ++....+..|+++|+.++...    .+..+++++|++ .||.+.|+    .++++|++  +..+++++++++
T Consensus       325 ~l-~~~~-g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal  400 (412)
T d1bw0a_         325 HI-GECI-GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYREAV  400 (412)
T ss_dssp             HH-TTST-TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHH
T ss_pred             HH-HHhc-CceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHHHHH
Confidence            66 3322 122223456788888876321    356788888876 59999886    46899999  567899999999


Q ss_pred             HHHHHHHHHHh
Q psy6548         228 DIIINTINTMA  238 (242)
Q Consensus       228 ~~l~~~l~~~~  238 (242)
                      ++|++.+++.+
T Consensus       401 ~Rl~~~l~~~~  411 (412)
T d1bw0a_         401 ERIKAFCQRHA  411 (412)
T ss_dssp             HHHHHHHHHHB
T ss_pred             HHHHHHHHhcC
Confidence            99999887753

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.85  E-value=2.9e-20  Score=157.13  Aligned_cols=211  Identities=15%  Similarity=0.126  Sum_probs=138.8

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc----c---cCCCCC-CE---
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI----H---YEDVRP-DI---   85 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~----~---~~~~~~-~~---   85 (242)
                      ...+++++++.+++|++| .+.+.+.+++|+++|++||++||+||+|.++...+..+ ++    .   ...... .+   
T Consensus       185 ~~~~~~~~~l~nP~NPtG-~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~  263 (428)
T d1iaya_         185 SNIKVKGLILTNPSNPLG-TTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV  263 (428)
T ss_dssp             TTCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred             cCCCceEEEEccCCCccc-ccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEE
Confidence            467889999999999999 56677889999999999999999999998764443221 10    0   001111 22   


Q ss_pred             EEeecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHH---HHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          86 VILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALD---VILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        86 ~~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~---~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                      .++||.|+ +| +|+||+++. +.+.+.+.....  ....+...+.++.+.+.   ..+.  ++..+.++++++.+.+.|
T Consensus       264 ~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L  340 (428)
T d1iaya_         264 YSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGL  340 (428)
T ss_dssp             EESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcccCCC-cccccccccccchhhhhhhhhc--ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHH
Confidence            23889998 88 999999875 556555543211  11233343333322221   1111  234555666777787888


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~  226 (242)
                       +..+  +....+..|+++|++++..-     .+..++++.|++ .||.+.|+      +++++|+++. ..++++++++
T Consensus       341 -~~~g--i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~a  416 (428)
T d1iaya_         341 -EVVG--IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIA  416 (428)
T ss_dssp             -HHTT--CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHH
T ss_pred             -HhCC--CEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHH
Confidence             5544  22233456899999987521     234567888875 59999874      4789999953 3467789999


Q ss_pred             HHHHHHHHHH
Q psy6548         227 LDIIINTINT  236 (242)
Q Consensus       227 ~~~l~~~l~~  236 (242)
                      +++|++++..
T Consensus       417 l~Rl~~~l~~  426 (428)
T d1iaya_         417 LARIRRFVGV  426 (428)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999998864

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.5e-21  Score=158.86  Aligned_cols=215  Identities=12%  Similarity=0.124  Sum_probs=148.2

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccC-CCCCCE--
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYE-DVRPDI--   85 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~-~~~~~~--   85 (242)
                      |+++ +...+.+++++++.+++|++|. +.+.+.+++|.++|+++++.++.||.|..+...+... ..... .....+  
T Consensus       148 d~~~l~~~~~~~~~~i~l~~P~NPtG~-v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  226 (382)
T d1u08a_         148 DWQEFAALLSERTRLVILNTPHNPSAT-VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVA  226 (382)
T ss_dssp             CHHHHHHHCCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEE
T ss_pred             CHHHHhhhhccCccEEEECCCCccccc-ccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEE
Confidence            4455 5555678999999999999995 5567889999999999999999999996543232111 10011 111122  


Q ss_pred             -EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548          86 -VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        86 -~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~  161 (242)
                       .++||.++ +| +|+||+++++++++.+........++.+.+.+.++.++++....  ......++++++.+.+.+ +.
T Consensus       227 ~~s~SK~~~~pG-~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~  304 (382)
T d1u08a_         227 VSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL-NE  304 (382)
T ss_dssp             EEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHT-TS
T ss_pred             EeeccccccCCc-ccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhh-cc
Confidence             23789998 89 99999999999888876654455667788888877777663221  234455555555555444 32


Q ss_pred             cCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         162 LSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      .  ++....+..|+++|++++... .+..+++++|+ +.||.+.|+        +.+++|++  +..++|++++++++|+
T Consensus       305 ~--g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~  380 (382)
T d1u08a_         305 S--RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLR  380 (382)
T ss_dssp             S--SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHT
T ss_pred             C--CcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHh
Confidence            2  233334567889999988532 56788888875 569999875        34689999  4568899999999986


Q ss_pred             H
Q psy6548         232 N  232 (242)
Q Consensus       232 ~  232 (242)
                      +
T Consensus       381 ~  381 (382)
T d1u08a_         381 Q  381 (382)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.83  E-value=6.2e-19  Score=146.47  Aligned_cols=207  Identities=16%  Similarity=0.225  Sum_probs=151.1

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh----CCEEEEeccccccCccCcccccccCCCCCCEEEee-
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY----NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG-   89 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~----~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s-   89 (242)
                      +...+.+++++++..++|++|.+.|    +++|.++|++|    ++++++|.+|+ ++..  +..  .....+|++++| 
T Consensus       139 ~~~i~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~--~~~--~~~~~~D~~~~s~  209 (381)
T d1elua_         139 ANHLGPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL--PLD--FSRLEVDYYAFTG  209 (381)
T ss_dssp             HTTCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB--CCC--TTTSCCSEEEEES
T ss_pred             Hhhhcccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc--ccc--ccccccccccccc
Confidence            4556789999999999999998887    88999999985    68999999985 2211  222  223457877754 


Q ss_pred             -ccccCCccchheeEeChhhhhccCCCCCCC----------------------CCCCCHHHHHHHHHHHHHHHhc----c
Q psy6548          90 -KALSGGLYPISAVLADDEVMGTLVPGTHGS----------------------TYGGNPLACKLAMTALDVILEE----N  142 (242)
Q Consensus        90 -K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~a~a~l~~~~~~----~  142 (242)
                       |+++++ .++|++..+++..+.+.+...++                      ..+.+.....+..++++.+...    .
T Consensus       210 ~K~~~~p-~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~  288 (381)
T d1elua_         210 HKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEE  288 (381)
T ss_dssp             SSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             ccccccc-chhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccccc
Confidence             999977 78899999988888776542221                      1123445555666677766542    2


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCH
Q psy6548         143 MIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITE  220 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~  220 (242)
                      ..++.+++.+++.+.| +.++. .+.......+.++.|.+... ...+.+.+.|.++||.++.. .++.+|++++.++|+
T Consensus       289 ~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~vsf~~~~~-~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~  366 (381)
T d1elua_         289 RYQAICQRSEFLWRGL-NQLPHVHCLATSAPQAGLVSFTVDSP-LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDE  366 (381)
T ss_dssp             HHHHHHHHHHHHHHHH-HHSTTEEESCSSCCSSSEEEEEECSS-SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCH
T ss_pred             chhhhhhHHHHHHHHH-hcCCCeEecCCCCccccEEEEEcCCC-CCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCH
Confidence            3567778888999999 77753 12222233456777877665 56788999999999998653 578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINT  233 (242)
Q Consensus       221 e~i~~~~~~l~~~  233 (242)
                      |||+++++.|++.
T Consensus       367 edid~ll~~l~e~  379 (381)
T d1elua_         367 EEINHLLARLADF  379 (381)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998753

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-19  Score=149.32  Aligned_cols=196  Identities=16%  Similarity=0.180  Sum_probs=135.7

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-CC
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-GG   95 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~g   95 (242)
                      .+++++++.+++|++|.+. +++.++.+.+.++ ++.++|+||+|.+|.......  ......++++   +|||+|+ +|
T Consensus       143 ~~~~~v~~~~pnNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~--~~~~~~~~~iv~~S~SK~~~laG  218 (354)
T d1fg7a_         143 DGVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA--GWLAEYPHLAILRTLSKAFALAG  218 (354)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG--GGTTTCTTEEEEEESSSTTCCGG
T ss_pred             cccceeeccCCCccceeEe-eeccccccccccc-ccccccccccchhhccccccc--hhhcccccceEEeCCccccCCCc
Confidence            5799999999999999655 6677888877775 577888888887664332211  1222334443   3999999 99


Q ss_pred             ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRG  172 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  172 (242)
                       +|+||+++++++++.+.+  ....+..+.+++..+.+++..-..   ....+.+++.++.+.+.+ ..++. .....++
T Consensus       219 -lRiGy~i~~~~~i~~l~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l-~~~~~-~~~~~p~  293 (354)
T d1fg7a_         219 -LRCGFTLANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAAL-KEIPC-VEQVFDS  293 (354)
T ss_dssp             -GCCEEEEECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHSTT-EEEECCC
T ss_pred             -cccccccccchhhhhhhh--hcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHH-HhCCC-cceeCCC
Confidence             999999999999888865  333455566665554444332111   223455667777777777 66552 1122345


Q ss_pred             eceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      .++++|+++++    ..++++.|.++||+++++     .++++|++   ..+++|+++++++|+
T Consensus       294 ~~~f~~~~~~~----~~~~~~~L~~~gIlvr~~~~~~~~~~~lRis---igt~ee~~~~l~aLk  350 (354)
T d1fg7a_         294 ETNYILARFKA----SSAVFKSLWDQGIILRDQNKQPSLSGCLRIT---VGTREESQRVIDALR  350 (354)
T ss_dssp             SSSEEEEEETT----HHHHHHHHHHTTEECEECTTSTTCTTEEEEE---CCCHHHHHHHHHHHH
T ss_pred             CceEEEEeCCC----HHHHHHHHHHCCcEEecCCCCCCCCCEEEEE---eCCHHHHHHHHHHHh
Confidence            67889998864    567999999999999765     25799999   348899999888875

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.83  E-value=6.9e-20  Score=154.92  Aligned_cols=212  Identities=15%  Similarity=0.152  Sum_probs=138.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc----ccCC------CCCCEEE
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI----HYED------VRPDIVI   87 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~----~~~~------~~~~~~~   87 (242)
                      ..+++++++.+++|++| .+.+++.+++|+++|++||+++|+||+|.++...+..+ +.    ....      ....+++
T Consensus       187 ~~~~~~i~~~nP~NPtG-~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~  265 (431)
T d1m7ya_         187 NLRVKGVLVTNPSNPLG-TTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHV  265 (431)
T ss_dssp             TCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEE
T ss_pred             cCcceEEEecCcccccc-ccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEE
Confidence            45789999999999999 56677899999999999999999999998764433211 10    0000      1112333


Q ss_pred             ---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHH
Q psy6548          88 ---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI---LE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~---~~--~~~~~~~~~~~~~l~~~l  158 (242)
                         +||.++ +| +|+||++++++++...... .......+...+.++.+.+...   ++  .+..+.++++++.+.+.|
T Consensus       266 ~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  343 (431)
T d1m7ya_         266 VYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGL  343 (431)
T ss_dssp             EEESSSSSCCGG-GCEEEEEESCHHHHHHHHH-HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCcccccCCC-CccceeccchhhhHHHHHH-Hhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhh
Confidence               899999 89 9999999987655433321 1222233444433333332211   11  234455666667777777


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREG  226 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~  226 (242)
                       +..+  +....+..|+++|++++...     .+..+++++|++ .||.+.|+      +++++|+++. ..++++++++
T Consensus       344 -~~~g--i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~a  419 (431)
T d1m7ya_         344 -QKSG--ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLA  419 (431)
T ss_dssp             -HTTT--CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHH
T ss_pred             -hcCC--cEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHH
Confidence             5433  22222445889999986521     345567888775 59999875      4688999943 2467889999


Q ss_pred             HHHHHHHHHHH
Q psy6548         227 LDIIINTINTM  237 (242)
Q Consensus       227 ~~~l~~~l~~~  237 (242)
                      +++|++.+++.
T Consensus       420 l~rL~~~l~~~  430 (431)
T d1m7ya_         420 MQRLKAFVGEY  430 (431)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.4e-19  Score=147.03  Aligned_cols=211  Identities=15%  Similarity=0.121  Sum_probs=151.9

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG-   89 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s-   89 (242)
                      ++. +...+++|+++.++.+.+.+|.+.|    +++|.++|+++|+++++|.+|+ .|..  +..++  ...+|++++| 
T Consensus       153 ~~~~~~~i~~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~--~id~~--~~~~D~~~~s~  223 (405)
T d1jf9a_         153 LETLPTLFDEKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSG  223 (405)
T ss_dssp             GGGHHHHCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEG
T ss_pred             HHHHHHhccCCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc--ccchh--hcCCceeeccc
Confidence            444 5556789999999999999998888    9999999999999999999995 2111  12222  2357888865 


Q ss_pred             -ccccCCccchheeEeChhhhhccCCCCCCC----------------------CCCCCHHHHHHHHHHHHHHHh---ccH
Q psy6548          90 -KALSGGLYPISAVLADDEVMGTLVPGTHGS----------------------TYGGNPLACKLAMTALDVILE---ENM  143 (242)
Q Consensus        90 -K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~a~a~l~~~~~---~~~  143 (242)
                       |++| + .++|++..+++..+.+.+...+.                      ..+.+..+..++.++++.+.+   +.+
T Consensus       224 hK~~G-p-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i  301 (405)
T d1jf9a_         224 HKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNI  301 (405)
T ss_dssp             GGTTS-C-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ccccc-C-CCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHH
Confidence             9975 4 56899999998877766531111                      113456677777778887655   345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------------CCCEEE
Q psy6548         144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------------SNNIIR  211 (242)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------~~~~lR  211 (242)
                      .++.+.+.+.+.+.+ +.++......+...+.++.+.++..  +..++...|.++||.++.+            .++.+|
T Consensus       302 ~~~~~~L~~~~~~~l-~~~~~~~~~~~~~r~~ivsf~~~~~--~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iR  378 (405)
T d1jf9a_         302 AEYEQNLMHYALSQL-ESVPDLTLYGPQNRLGVIAFNLGKH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCR  378 (405)
T ss_dssp             HHHHHHHHHHHHHHH-TTSTTEEEESCTTCCSEEEEEETTC--CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEE
T ss_pred             HHHHHHHHHHHHhhh-hcCCcccccCCcCcCcEEEEEcCCC--CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEE
Confidence            566666677777777 5554321122233456777888763  6788889999999998642            257899


Q ss_pred             EeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         212 LSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       212 ~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ++++.++|.+|++++++.|+++++-
T Consensus       379 iS~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         379 ASLAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999888764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=9.3e-20  Score=148.11  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=143.5

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYP   98 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~   98 (242)
                      .++..++++...++.|..+++.+.+++|+++|++||+++++|+++.++................+..+++|..+ +| .+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~  205 (343)
T d1m6sa_         127 PRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA-PV  205 (343)
T ss_dssp             CCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC-SS
T ss_pred             ccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccc-cc
Confidence            45777777777666777888889999999999999999999999975422221111111112344566666555 44 56


Q ss_pred             hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEE
Q psy6548          99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA  178 (242)
Q Consensus        99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~  178 (242)
                      .+++.+..+.+............+.+.....++.................++...+.+.+ ..+....... +..+++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~v~  283 (343)
T d1m6sa_         206 GSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKL-KEIGYSVNPE-DVKTNMVI  283 (343)
T ss_dssp             CEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHH-HHHTCBCCGG-GCCSSEEE
T ss_pred             cccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHhccCccCC-CCCceEEE
Confidence            777778777665544321111222222222222222222233344556666677777777 5555322221 23457888


Q ss_pred             EEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         179 IVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.++.......++++.|.++||++++.+.+.+|++++..+|+||||+++++|+++++++
T Consensus       284 ~~~~~~~~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         284 LRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             EECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCcccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            88876546788999999999999999889999999999999999999999999999886

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.80  E-value=1e-17  Score=140.44  Aligned_cols=208  Identities=17%  Similarity=0.168  Sum_probs=151.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      ....+++|++|.+..+++.+|.+.|    ++++.++|+++|+++++|.+|+ +|..  +..+.  ...+|++++|  |++
T Consensus       157 ~~~~~~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~--~id~~--~~~~D~~~~s~hK~~  227 (408)
T d1t3ia_         157 KTLLSEKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY--PLDVQ--LIDCDWLVASGHKMC  227 (408)
T ss_dssp             HHHCCTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTT
T ss_pred             hhccCCCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cccc--ccccc--ccCCceEEecccccc
Confidence            4456789999999999999998888    8999999999999999999995 2211  12222  2356888866  985


Q ss_pred             cCCccchheeEeChhhhhccCCCCCCC---------------------CCCCCHHHHHHHHHHHHHHHh---ccHHHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGTHGS---------------------TYGGNPLACKLAMTALDVILE---ENMIENAY  148 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~  148 (242)
                      | + .++|++..+++......+...++                     ..+.+..+++++.++++.+.+   +.+.++..
T Consensus       228 g-p-~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~  305 (408)
T d1t3ia_         228 A-P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEV  305 (408)
T ss_dssp             S-C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             C-C-CCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4 4 56899999988877666543221                     113355666666677887665   44567777


Q ss_pred             HHHHHHHHHHHhhcCCCCC----CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------------CCCEEEE
Q psy6548         149 KMGEIFRSELRSRLSPDIV----PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------------SNNIIRL  212 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------~~~~lR~  212 (242)
                      ++.+++.+.+ +..+....    ......+.++.+.++.  .+..++...|.++||.++.+            .++.+|+
T Consensus       306 ~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~iv~f~~~~--~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRi  382 (408)
T d1t3ia_         306 ELTHYLWQGL-GQIPQLRLYGPNPKHGDRAALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARA  382 (408)
T ss_dssp             HHHHHHHHHH-HTCTTEEEESCCGGGSCBCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred             HHHhHHhhhh-ccCccccccCCCccccCcceEEEEEeCC--CCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEE
Confidence            8888888888 65543111    1112235567777766  46888999999999998643            2567999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         213 SPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++.++|++|+|++++.|+++++.
T Consensus       383 S~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         383 SLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998875

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.76  E-value=1.6e-18  Score=145.61  Aligned_cols=206  Identities=10%  Similarity=0.078  Sum_probs=132.2

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc---ccc-ccCCCCCC-E--EEeec
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL---LAI-HYEDVRPD-I--VILGK   90 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~---~~~-~~~~~~~~-~--~~~sK   90 (242)
                      ..+++.++++.+++|++| .+++++.+++|+++|++||+++|+||+|.++...+..   ... ........ +  .++||
T Consensus       180 ~~~~~~~il~~~P~NPTG-~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk  258 (412)
T d1ajsa_         180 APEFSIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK  258 (412)
T ss_dssp             SCTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred             ccCCcEEEEecCCCCCcC-CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccc
Confidence            367888999999999999 6778899999999999999999999999887544321   110 11111122 2  23789


Q ss_pred             ccc-CCccchheeEeChhhhhccCCC-------CCCCCCCCCHHHHHHHHHHHHH------HHh--ccHHHHHHHHHHHH
Q psy6548          91 ALS-GGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDV------ILE--ENMIENAYKMGEIF  154 (242)
Q Consensus        91 ~~~-~g~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~a~l~~------~~~--~~~~~~~~~~~~~l  154 (242)
                      .++ .| +|+||+.+.....+.+...       ........+.+.+.++...+..      +..  +...+.++++++.+
T Consensus       259 ~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l  337 (412)
T d1ajsa_         259 NFGLYN-ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL  337 (412)
T ss_dssp             TSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCC-CCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988 78 9999998875544333211       1112223444555444433321      111  23456677778888


Q ss_pred             HHHHHhhcCCCCC--CeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548         155 RSELRSRLSPDIV--PVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDIII  231 (242)
Q Consensus       155 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~  231 (242)
                      .+.| +.++....  ...+..|+|.|+.+.     . +++++| .++||++.|++    ||++.. .++++++++.++|+
T Consensus       338 ~~~L-~~~~~~~~~~~i~~~~G~F~~~~ls-----~-~~v~~L~~e~gV~~vpg~----Ri~~ag-~~~~~i~~~a~aI~  405 (412)
T d1ajsa_         338 RARL-EALKTPGTWNHITDQIGMFSFTGLN-----P-KQVEYLINQKHIYLLPSG----RINMCG-LTTKNLDYVATSIH  405 (412)
T ss_dssp             HHHH-HHTTCSSCCHHHHHCCSSEEECCCC-----H-HHHHHHHHTTCEECCTTS----EEEGGG-CCTTTHHHHHHHHH
T ss_pred             HHHH-HHhCCCCCeeeecCCCeEEEecCCC-----H-HHHHHHHHhCCEEEeCCC----eEEecc-CCHHHHHHHHHHHH
Confidence            8888 56543211  123445677665432     2 334455 56799998874    888443 47789999999999


Q ss_pred             HHHHHH
Q psy6548         232 NTINTM  237 (242)
Q Consensus       232 ~~l~~~  237 (242)
                      ++++++
T Consensus       406 ~av~~~  411 (412)
T d1ajsa_         406 EAVTKI  411 (412)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            999876

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-17  Score=138.26  Aligned_cols=215  Identities=17%  Similarity=0.193  Sum_probs=151.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      ..+.++++.++++..+.+.+|.+.|    ++++.++|++||+++++|.+++ +|..  +..++  ....|++++|  |++
T Consensus       138 ~~~~~~~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~--~~d~~--~~~~D~~~~s~~K~~  208 (388)
T d1h0ca_         138 EGLAQHKPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT--PLYMD--RQGIDILYSGSQKAL  208 (388)
T ss_dssp             HHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTT
T ss_pred             HHhccCCcceEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc-cccc--ccccc--ccccceecccccccc
Confidence            3344667889999999999998877    8899999999999999999996 2111  22223  3456887765  999


Q ss_pred             cCCccchheeEeChhhhhccCCCCC-----------------------CCCCCCCHHHHHHHHHHHHHHHh---ccHHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILE---ENMIEN  146 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~  146 (242)
                      ++. .++|+++.+++.++.+.....                       ....+.+.....+..++++.+.+   +...++
T Consensus       209 ~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~  287 (388)
T d1h0ca_         209 NAP-PGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQ  287 (388)
T ss_dssp             CCC-TTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cCC-CceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhcccccccc
Confidence            866 567888888877766543210                       01112344556666667776655   345567


Q ss_pred             HHHHHHHHHHHHHhhcCCCC-CCeEe-eeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEe-ccCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPDI-VPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLS-PALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~-~~~~~  218 (242)
                      .+++.+++++.+ +..+... ..... ....++.+.+++. .+..++.+.|.++ ||.++.+    .++.+|++ +++++
T Consensus       288 ~~~l~~~l~~~~-~~~g~~~~~~~~~~rs~~i~~~~~p~~-~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~  365 (388)
T d1h0ca_         288 HREAAAYLHGRL-QALGLQLFVKDPALRLPTVTTVAVPAG-YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNA  365 (388)
T ss_dssp             HHHHHHHHHHHH-HHHTCCBSSCSGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGC
T ss_pred             ccchhHHHHHHH-hhcCcccccCCHHHcCCeEEEEECCCC-CCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCC
Confidence            777888888888 6665321 11211 2334667777765 6788999998765 9988754    45789998 67888


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhc
Q psy6548         219 TEQELREGLDIIINTINTMAAKK  241 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~~~~~  241 (242)
                      |.|||++++++|+++++++.+|+
T Consensus       366 t~edid~li~aL~~~L~~l~k~~  388 (388)
T d1h0ca_         366 TRENVDRVTEALRAALQHCPKKK  388 (388)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCCC-
T ss_pred             CHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999988764

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.74  E-value=4.1e-18  Score=143.07  Aligned_cols=204  Identities=11%  Similarity=0.067  Sum_probs=134.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c------cccCCCCCCEEE---e
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A------IHYEDVRPDIVI---L   88 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~------~~~~~~~~~~~~---~   88 (242)
                      +..+.++++.+++||+| ..++++.+++|+++|++|++++|+||+|.+|...+... .      .......+.+++   +
T Consensus       174 ~~~~~~i~i~~P~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  252 (412)
T d1yaaa_         174 PEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF  252 (412)
T ss_dssp             CTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred             CCceEEEEecCCCCCcc-ccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEec
Confidence            56788899999999999 56678999999999999999999999999875544211 0      111222333333   8


Q ss_pred             ecccc-CCccchheeEeChhhhhccCCC-----------CCCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHH
Q psy6548          89 GKALS-GGLYPISAVLADDEVMGTLVPG-----------THGSTYGGNPLACKLAMTALDVI------LE--ENMIENAY  148 (242)
Q Consensus        89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~a~a~l~~~------~~--~~~~~~~~  148 (242)
                      ||.++ +| +|+||++++++.++.+...           ......+.+.+.+.++...++..      ..  +.+.+.++
T Consensus       253 SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  331 (412)
T d1yaaa_         253 AKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRIT  331 (412)
T ss_dssp             TTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCc-CceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            89999 89 9999999886554332211           11223345566666555444421      11  23456677


Q ss_pred             HHHHHHHHHHHhhcCC-C-CCCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccCCCCEEEEeccCcCCHHHHHH
Q psy6548         149 KMGEIFRSELRSRLSP-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELRE  225 (242)
Q Consensus       149 ~~~~~l~~~l~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~  225 (242)
                      ++++.+.+.| +.++. . +....+..|++.|+.++      .+++++| .+.||.+.+++    ||+++. .+++.++.
T Consensus       332 ~~r~~l~~~L-~~~g~~~~~~~~~~~gG~F~~~~ls------~e~~~~L~~e~~V~~~~g~----Ris~~g-~~~~~i~~  399 (412)
T d1yaaa_         332 KMRHALRDHL-VKLGTPGNWDHIVNQCGMFSFTGLT------PQMVKRLEETHAVYLVASG----RASIAG-LNQGNVEY  399 (412)
T ss_dssp             HHHHHHHHHH-HHHTCSSCCTHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTTS----EEEGGG-CCTTTHHH
T ss_pred             HHHHHHHHHH-HHhCCCCCCceeCCCceEEEecCcC------HHHHHHHHHhCCEEECCCC----EEEecc-CCHHHHHH
Confidence            7788888888 55542 2 22223456777775442      2345566 46799888763    888543 47778999


Q ss_pred             HHHHHHHHHHH
Q psy6548         226 GLDIIINTINT  236 (242)
Q Consensus       226 ~~~~l~~~l~~  236 (242)
                      +.++|.++++.
T Consensus       400 l~~ai~~v~k~  410 (412)
T d1yaaa_         400 VAKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999888764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=7e-18  Score=139.52  Aligned_cols=223  Identities=13%  Similarity=0.072  Sum_probs=131.4

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDV   81 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~   81 (242)
                      ..++++|+++ +...++++++|++++++|+++   .+.+.+++|+++|++||+++++||+|...  ...+.+.. ..+  
T Consensus       116 ~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~---~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~-~~~--  189 (366)
T d2aeua1         116 KYFESDKVGEILNKIDKDTLVIITGSTMDLKV---IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA-LKL--  189 (366)
T ss_dssp             EEEEESCHHHHHTTCCTTEEEEEECBCTTSCB---CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH-HHH--
T ss_pred             eEECCCCHHHHHHhcCCCceEEEEEecCCCCc---CCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCH-hhc--
Confidence            3467889999 777778999999998877643   23356999999999999999999999531  11111111 112  


Q ss_pred             CCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHH
Q psy6548          82 RPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI---ENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~---~~~~~~~~~l~~  156 (242)
                      ..|++++|  |++ +| +++||+++++++++.++.......++.+++.+.++.++++.+....+.   ++.++....+.+
T Consensus       190 ~~di~~~S~sK~~-~g-~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~  267 (366)
T d2aeua1         190 GADLVVTSTDKLM-EG-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIE  267 (366)
T ss_dssp             TCSEEEEETTSSS-SS-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHH
T ss_pred             CceEEEecccccc-cc-cceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            35677755  555 46 899999999999998876444445566777777777777643221222   222222222333


Q ss_pred             HHHhhcCC--CCCC-eEe-eeceeEEEEecCCc----hhHHHHHHHHHHC-CceeccC-----CCCEEEEeccCcCCHH-
Q psy6548         157 ELRSRLSP--DIVP-VVR-GKGLLNAIVLDKSI----LEVYDVCIKMKDA-GLVTKPI-----SNNIIRLSPALNITEQ-  221 (242)
Q Consensus       157 ~l~~~l~~--~~~~-~~~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~~~~~-----~~~~lR~~~~~~~t~e-  221 (242)
                      .+......  .... ... ..+.+++.......    .+..+++..|.++ ||.+.|+     +.+++||++....+++ 
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i  347 (366)
T d2aeua1         268 KLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERI  347 (366)
T ss_dssp             HHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGS
T ss_pred             hhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhC
Confidence            33121111  1111 111 12233343333321    2355677777754 9988653     5678999965443222 


Q ss_pred             HHHHHHHHHHHHHH
Q psy6548         222 ELREGLDIIINTIN  235 (242)
Q Consensus       222 ~i~~~~~~l~~~l~  235 (242)
                      +.+++++.+.+.++
T Consensus       348 ~~d~l~~ai~~~lK  361 (366)
T d2aeua1         348 DDNYIIKAIVESIK  361 (366)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            24555555555444

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.74  E-value=1.7e-18  Score=144.89  Aligned_cols=202  Identities=13%  Similarity=0.063  Sum_probs=130.6

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc----ccccCCCCCCE---EEeecc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL----AIHYEDVRPDI---VILGKA   91 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~----~~~~~~~~~~~---~~~sK~   91 (242)
                      +++++++++.+++||+| .+.+++.+++|+++|++|++++|+||+|.++...+...    .........++   ..+||.
T Consensus       173 ~~~~~~iii~~p~NPTG-~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  251 (401)
T d7aata_         173 PEKSIILLHACAHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN  251 (401)
T ss_dssp             CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred             CCceEEEEecCCCCCcc-ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence            56889999999999999 56678999999999999999999999999875443211    00111122222   237899


Q ss_pred             cc-CCccchheeEeChhhhhccCCCC-------CCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~a~a~l~~~------~~--~~~~~~~~~~~~~l~  155 (242)
                      ++ .| +|+||+.++.+..+......       .......+.+.+.++...++.-      ..  +...+.++++++.+.
T Consensus       252 ~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~  330 (401)
T d7aata_         252 MGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV  330 (401)
T ss_dssp             SCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeec-cccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 88 99999998876655443210       1111233444444433333311      11  234566677788888


Q ss_pred             HHHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         156 SELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       156 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.| +.++..  +....+..|++.|+.++      .+++++| .++||.+.|+    +||++.. .++++|+++.++|.+
T Consensus       331 ~~L-~~~~~~~~~~~~~~~~G~F~~~~ls------~e~~~~L~~e~gV~~~pg----~Ris~a~-~~~~~i~~la~ai~~  398 (401)
T d7aata_         331 SNL-KKEGSSHNWQHITDQIGMFCFTGLK------PEQVERLTKEFSIYMTKD----GRISVAG-VASSNVGYLAHAIHQ  398 (401)
T ss_dssp             HHH-HHTTCCSCCHHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTT----CEEEGGG-CCTTTHHHHHHHHHH
T ss_pred             HHH-HHhCCCCCcceECCCCeEEEecCCC------HHHHHHHHHhCCEEECCC----cEEEecc-CCHHHHHHHHHHHHH
Confidence            888 555422  11223556788887543      2355666 4679999887    4998543 477789998888887


Q ss_pred             HH
Q psy6548         233 TI  234 (242)
Q Consensus       233 ~l  234 (242)
                      ++
T Consensus       399 v~  400 (401)
T d7aata_         399 VT  400 (401)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.2e-16  Score=132.99  Aligned_cols=213  Identities=13%  Similarity=0.173  Sum_probs=135.3

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG   89 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s   89 (242)
                      |+++ +...+++|++|+++.++|++|.+.|    +++|.++|++||+++++|.+|+ ++..  +..  .....+|+++++
T Consensus       132 d~~~~~~~i~~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~--~~d--~~~~~~D~~~~s  202 (391)
T d1p3wa_         132 DLKELEAAMRDDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL--PID--LSQLKVDLMSFS  202 (391)
T ss_dssp             CHHHHHHHCCTTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB--CCC--TTTSCCSEEEEE
T ss_pred             cHHHHHHhCCCCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc--ccc--chhccccccccc
Confidence            3555 5556889999999999999998887    8999999999999999999995 2211  122  223456777644


Q ss_pred             --ccccCCccchheeEeChhhhhccCCCCCCCCC-------CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548          90 --KALSGGLYPISAVLADDEVMGTLVPGTHGSTY-------GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l  158 (242)
                        |++| + .++|++..+++......+...++..       ..+.....+...+++....  ....++++++...+.+.|
T Consensus       203 ~~k~~g-~-~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  280 (391)
T d1p3wa_         203 GHKIYG-P-KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI  280 (391)
T ss_dssp             STTTTS-C-SSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccC-C-CceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence              7765 3 4578888888777777665443221       2222222222223332222  233456666777777777


Q ss_pred             HhhcCCCC--CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEEEe
Q psy6548         159 RSRLSPDI--VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR~~  213 (242)
                       ..+....  ............+..+..  ..+.+...|.  ++.++.+                       ..+.+|++
T Consensus       281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS  355 (391)
T d1p3wa_         281 -KDIEEVYLNGDLEHGAPNILNVSFNYV--EGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS  355 (391)
T ss_dssp             -TTSTTEEECSCTTTSCTTEEEEEETTS--CHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEE
T ss_pred             -HhhcCeeecccccccCceEEEEEeCCC--ChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEe
Confidence             5544211  111112233445555553  5666666663  4443211                       12579999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         214 PALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                      ++.++|++|++++++.|+++++++++
T Consensus       356 ~~~~nt~edid~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         356 LGRFTTEEEIDYTIELVRKSIGRLRD  381 (391)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.4e-19  Score=146.90  Aligned_cols=203  Identities=12%  Similarity=0.152  Sum_probs=130.1

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--cccc-CCCCCCE---EEeecc
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHY-EDVRPDI---VILGKA   91 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~-~~~~~~~---~~~sK~   91 (242)
                      ..+++.++++.+++||+| .+.+++.+++|+++|++|++++|+||+|.++...+...  .... .+...+.   ..+||.
T Consensus       169 ~~~~~~~i~~~~P~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  247 (396)
T d2q7wa1         169 AQAGDVVLFHGCCHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKN  247 (396)
T ss_dssp             CCTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred             hccCcEEEEecCCcCCcC-eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccc
Confidence            356788999999999999 56678999999999999999999999999875443211  1100 0111222   337899


Q ss_pred             cc-CCccchheeEeChhhhhccCCCC------CCCCC-CCCHHHHHHHHHHHHH------HHh--ccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPGT------HGSTY-GGNPLACKLAMTALDV------ILE--ENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~~------~~~~~-~~~~~~~~~a~a~l~~------~~~--~~~~~~~~~~~~~l~  155 (242)
                      ++ .| +|+||+.+++..++......      ....+ +.+...+.++.+.+..      +++  +.+.+.++++++.+.
T Consensus       248 ~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~  326 (396)
T d2q7wa1         248 FGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV  326 (396)
T ss_dssp             TTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred             ccccC-CCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88 88 99999998866555443210      11222 2344444443333221      111  234566777888888


Q ss_pred             HHHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         156 SELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       156 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.| +.++..  +....+..|+|.|+.++.      +++++|+ +.||++.+++    ||++.. .++++|+++.++|.+
T Consensus       327 ~~L-~~~~~~~~~~~~~~~~G~F~~~~l~~------e~~~~L~~e~gV~~~~g~----Ri~~a~-l~~~~i~~~~~ai~~  394 (396)
T d2q7wa1         327 NTL-QEKGANRDFSFIIKQNGMFSFSGLTK------EQVLRLREEFGVYAVASG----RVNVAG-MTPDNMAPLCEAIVA  394 (396)
T ss_dssp             HHH-HHTTCCSCCTHHHHCCSSEEECCCCH------HHHHHHHHHHCEECCTTC----EEEGGG-CCTTTHHHHHHHHHH
T ss_pred             HHH-HHhCCCCCcceecCCCeEEEeeCCCH------HHHHHHHHhCCEEECCCC----EEEecC-CCHHHHHHHHHHHHH
Confidence            888 665432  222234567788765432      3456665 5799988865    888543 367789999988877


Q ss_pred             HH
Q psy6548         233 TI  234 (242)
Q Consensus       233 ~l  234 (242)
                      ++
T Consensus       395 v~  396 (396)
T d2q7wa1         395 VL  396 (396)
T ss_dssp             HC
T ss_pred             hC
Confidence            53

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=8.7e-16  Score=126.15  Aligned_cols=206  Identities=15%  Similarity=0.210  Sum_probs=145.4

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCC
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGG   95 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g   95 (242)
                      .+.+++.+.+..+.+.+|.+.|    ++++.++|++||+++++|.+|+ +|..  ++.++  ....|++++|  |+++|+
T Consensus       124 ~~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~--~~d~~--~~~~D~~~~s~~K~l~gp  194 (361)
T d1m32a_         124 ADPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI--PMDIA--ALHIDYLISSANKCIQGV  194 (361)
T ss_dssp             HCTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC
T ss_pred             hccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCcc--ccccc--ccccceEEeeecccccCC
Confidence            4678999999999999998887    9999999999999999999996 2211  22223  3456888876  999876


Q ss_pred             ccchheeEeChhhhhccCCCCCC------------------CCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHH
Q psy6548          96 LYPISAVLADDEVMGTLVPGTHG------------------STYGGNPLACKLAMTALDVILEE----NMIENAYKMGEI  153 (242)
Q Consensus        96 ~~~~g~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~  153 (242)
                       .++|++..+++..+...+...+                  ...+.+.....+...+++....+    ....+.+...+.
T Consensus       195 -~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (361)
T d1m32a_         195 -PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRS  273 (361)
T ss_dssp             -SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             -CCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence             6789999999988887764322                  12234555565556666654443    234556667777


Q ss_pred             HHHHHHhhcCCCCCCeEee-eceeEEEEecCC-chhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHH
Q psy6548         154 FRSELRSRLSPDIVPVVRG-KGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLD  228 (242)
Q Consensus       154 l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~  228 (242)
                      +++.+ +..+......... ...++.+..++. ..+..++.+.|.++|+++.++   .++.+|++...+++++||+++++
T Consensus       274 l~~~~-~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~  352 (361)
T d1m32a_         274 LVAGM-RALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLT  352 (361)
T ss_dssp             HHHHH-HHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHH
T ss_pred             HHHHH-hhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHH
Confidence            77777 6655332222221 223456666543 246788999999999998754   46789998544679999999999


Q ss_pred             HHHHHH
Q psy6548         229 IIINTI  234 (242)
Q Consensus       229 ~l~~~l  234 (242)
                      .|+++|
T Consensus       353 al~~~L  358 (361)
T d1m32a_         353 AIRTAM  358 (361)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            998874

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.70  E-value=5.8e-16  Score=129.14  Aligned_cols=211  Identities=15%  Similarity=0.182  Sum_probs=139.4

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG-   89 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s-   89 (242)
                      ++. ..+.+++|++|.+..+++.+|.+.|    +++|+++|+++|+++++|.+|+ +|..  +...+  ...+|+++++ 
T Consensus       154 ~~~~~~~i~~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~--~~~~~--~~~~d~~~~s~  224 (404)
T d1qz9a_         154 PEELPQAIDQDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAV--PVDLH--QAGADYAIGCT  224 (404)
T ss_dssp             GGGHHHHCSTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEECS
T ss_pred             chhHHHhcCCCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-cccc--ccccc--cccceEEEEec
Confidence            444 5566889999999999999999988    9999999999999999999995 2211  11222  2345766654 


Q ss_pred             -ccccCCccchheeEeChhhhhccCCCCCC-----------------------CCCCCCHHHHHHHHHHHHHHHh---cc
Q psy6548          90 -KALSGGLYPISAVLADDEVMGTLVPGTHG-----------------------STYGGNPLACKLAMTALDVILE---EN  142 (242)
Q Consensus        90 -K~~~~g~~~~g~~~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~~a~a~l~~~~~---~~  142 (242)
                       |++.+|--.+|++..+++..+.+.+...+                       .....+........++++.+..   +.
T Consensus       225 ~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (404)
T d1qz9a_         225 YKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMAS  304 (404)
T ss_dssp             SSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHH
Confidence             88764313367777777776655432111                       0112344555555555665544   23


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC--CC--C--CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec-c
Q psy6548         143 MIENAYKMGEIFRSELRSRLS--PD--I--VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP-A  215 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~-~  215 (242)
                      +.++...+...+...+ ..+.  ..  +  +......+.++.+..++    ..++.+.|.++||++..+.++.||+++ |
T Consensus       305 i~~~~~~~~~~~~~l~-~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~----~~~v~~~L~~~gi~~~~r~~~~lRiS~~h  379 (404)
T d1qz9a_         305 LRRKSLALTDLFIELV-EQRCAAHELTLVTPREHAKRGSHVSFEHPE----GYAVIQALIDRGVIGDYREPRIMRFGFTP  379 (404)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHTTSCCEECSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTEECEEETTTEEEEECCT
T ss_pred             HHHHHHHhHHHHHHHH-HhhccCCCEEEECCCCccceeeEEEEecCC----HHHHHHHHHHCCCEEeecCCCeEEEECCC
Confidence            3444455555544444 2221  11  1  11222335566676553    578899999999988766678999998 6


Q ss_pred             CcCCHHHHHHHHHHHHHHHHH
Q psy6548         216 LNITEQELREGLDIIINTINT  236 (242)
Q Consensus       216 ~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      +++|++||+++++.|++++++
T Consensus       380 ~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         380 LYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            789999999999999999876

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.70  E-value=4.1e-17  Score=136.84  Aligned_cols=199  Identities=15%  Similarity=0.062  Sum_probs=132.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      ....+++++++++++++||+|.+..           +..+++.+|.||+|.+...+.  .. ...  ..++++  +||.+
T Consensus       190 ~~~~~~~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~--~~-~~~--~~~Ivl~S~SK~f  253 (425)
T d2hoxa1         190 VNVSNPEQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTP--IK-YKA--DEDILLFTMSKFT  253 (425)
T ss_dssp             TTCSCGGGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCSTTTSC--CC-SCB--CCSEEEEEHHHHT
T ss_pred             HhhCCCCceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccCccccc--hh-hhc--CCeEEEEeCHHhc
Confidence            4445678999999999999997532           224689999999995421111  11 111  123433  88999


Q ss_pred             c-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---------cc----HHHHHHHHHHHHHHH
Q psy6548          93 S-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---------EN----MIENAYKMGEIFRSE  157 (242)
Q Consensus        93 ~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---------~~----~~~~~~~~~~~l~~~  157 (242)
                      + +| +|+||++++ +.+++.+.......+++.+.+++.++.++++....         .+    ..+.++++++.+++.
T Consensus       254 glaG-lRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~  332 (425)
T d2hoxa1         254 GHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL  332 (425)
T ss_dssp             SCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcc-hheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 99 999997665 66766666543445667788888888887765311         11    245556666677777


Q ss_pred             HHhhcCCCC-------------CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCC
Q psy6548         158 LRSRLSPDI-------------VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNIT  219 (242)
Q Consensus       158 l~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t  219 (242)
                      | +..+...             ....+..+.+.|+....+  +.+...+.|.++||.+.|+     +++++|++  +..+
T Consensus       333 L-~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~  407 (425)
T d2hoxa1         333 L-DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKT  407 (425)
T ss_dssp             H-TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSC
T ss_pred             H-HhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--hHHHHHHHHHhCCEEEEechhcCCCCCEEEEE--ecCC
Confidence            7 5443200             112233455778877654  3334556778999999875     46899999  6778


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTIN  235 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~  235 (242)
                      +|++++++++|++.++
T Consensus       408 ~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         408 QDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998875

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.6e-18  Score=143.62  Aligned_cols=201  Identities=11%  Similarity=0.065  Sum_probs=123.4

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--cc-ccCCCCCCEEE---eeccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AI-HYEDVRPDIVI---LGKAL   92 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~-~~~~~~~~~~~---~sK~~   92 (242)
                      ++++.++++.+++||+| .+++++.+++|+++|++|++++|+||+|.++...+...  .. ...+...++++   +||.+
T Consensus       171 ~~~~~~~~~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  249 (397)
T d3tata_         171 PARSIVLLHPCCHNPTG-ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF  249 (397)
T ss_dssp             CSSCCCEECSSSCSSSC-CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH
T ss_pred             ccccEEEEecCCCCCCC-eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc
Confidence            56788899999999999 67788999999999999999999999999874433211  11 11122223333   88999


Q ss_pred             c-CCccchheeEeChhhhhccCCC-------CCCCCCCCCHHHHHHHHHHHHHHH-h-------ccHHHHHHHHHHHHHH
Q psy6548          93 S-GGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVIL-E-------ENMIENAYKMGEIFRS  156 (242)
Q Consensus        93 ~-~g~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~a~l~~~~-~-------~~~~~~~~~~~~~l~~  156 (242)
                      + +| +|+||+.++...++.....       ......+.+...+.++...+.... .       +.+.++++++++.+.+
T Consensus       250 ~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  328 (397)
T d3tata_         250 SLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK  328 (397)
T ss_dssp             TBTT-TCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccC-ccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 78 9999998876554433221       122222334444444433332111 0       1122333344444444


Q ss_pred             HHHhhcC-CC-CCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         157 ELRSRLS-PD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       157 ~l~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      .| +... .. +....+..|++.|+.++.      +++++|++ .||.+.|++    ||+++. .++++|+++.++|+++
T Consensus       329 ~L-~~~~~~~~~~~~~~~~G~F~~~~ls~------e~~~~L~~e~~V~l~~g~----Ri~~a~-~~~~~i~~~~~ai~~v  396 (397)
T d3tata_         329 VL-STEMPERNFDYLLNQRGMFSYTGLSA------AQVDRLREEFGVYLIASG----RMCVAG-LNTANVQRVAKAFAAV  396 (397)
T ss_dssp             TT-TTTCTTSCTTHHHHCCSSBCCCCCCH------HHHHHHTTTTCEECCSSS----CCBTTS-CCTTTHHHHHHHHHHH
T ss_pred             HH-HHhCCCCceEEEcCCCceEEecCcCH------HHHHHHHHhCCEEeCCCC----EEEecc-CCHHHHHHHHHHHHHh
Confidence            44 2222 21 222345677888875533      35666765 599988864    888543 4778899999888775

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.3e-14  Score=118.75  Aligned_cols=221  Identities=14%  Similarity=0.080  Sum_probs=149.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      ++.++|.+... ....+.++..+++....+.+|.+.|    ++++.++|++|+  +++++|.+++ +|..  +..++.++
T Consensus       102 ~~~~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~  174 (348)
T d1iuga_         102 RLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG  174 (348)
T ss_dssp             EEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT
T ss_pred             cccccCCCccccccccccCCCeeEEEecchhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--cccccccc
Confidence            34556665555 5556778888898888888897777    899999999985  7889999886 3222  23344444


Q ss_pred             CCCCEEEee--ccccCCccchheeEeChhhhhccCCCC-------------CCC-CCCCCHHHHHHHHHHHHHHHhc--c
Q psy6548          81 VRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGT-------------HGS-TYGGNPLACKLAMTALDVILEE--N  142 (242)
Q Consensus        81 ~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~-------------~~~-~~~~~~~~~~~a~a~l~~~~~~--~  142 (242)
                        .|++++|  |+++|. -++|+++.+++.++++++..             .+. .++.+...+.+..++++.+..+  +
T Consensus       175 --iD~~~~~sqK~l~gp-pG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~  251 (348)
T d1iuga_         175 --VDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEE  251 (348)
T ss_dssp             --CSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHH
T ss_pred             --CCEEEeccccceecC-CceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhH
Confidence              5888765  999766 66899999999998887631             122 2344445666667788876543  1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcC
Q psy6548         143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNI  218 (242)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~  218 (242)
                      ..+..+.....++..+ +..+-....... ...+..+.+|+. .+..++.+.|.++|+.+.++    .+..+|++.-...
T Consensus       252 ~~~~~~~~~~~~~~~~-~~~gl~~~~~~~-s~~v~~~~~P~g-~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~  328 (348)
T d1iuga_         252 HLALKAWQNALLYGVG-EEGGLRPVPKRF-SPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAY  328 (348)
T ss_dssp             HHHHHHHHHHHHHHHH-HHTTCEESCSSB-CTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSC
T ss_pred             HHHHHHHHHHHHhhhh-hhhhhccChhhc-CCeEEEEECCCC-CCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCC
Confidence            2222222333333333 343321111111 223567888775 67889999999999999776    3468999855578


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy6548         219 TEQELREGLDIIINTINTM  237 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~  237 (242)
                      +.+|++++++.|+++++++
T Consensus       329 ~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         329 DRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999986

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=2.8e-15  Score=123.03  Aligned_cols=205  Identities=14%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGL   96 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~   96 (242)
                      ..++++|+++.++|++|.+.+    +++|+++|++||+++++|++|+ ++..+.  ....  ...|++++|  |+++++ 
T Consensus       138 ~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~--~~~~--~g~D~~~~S~~K~~~~~-  207 (364)
T d2e7ja1         138 RGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV--SLKE--IGADFIVGSGHKSMAAS-  207 (364)
T ss_dssp             TSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC--CHHH--HTCSEEEEEHHHHSSCC-
T ss_pred             cCCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhhh--cccc--cccceeeeccccccCCC-
Confidence            467889999999999998776    9999999999999999999995 322221  1122  235777755  999965 


Q ss_pred             cchheeEeChhhhhccCCCCCCC-----C---CCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548          97 YPISAVLADDEVMGTLVPGTHGS-----T---YGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDI  166 (242)
Q Consensus        97 ~~~g~~~~~~~~~~~l~~~~~~~-----~---~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~  166 (242)
                      -++|++.+++++++.+.......     .   .........+..++++...+  +.+.+ ..++.+++++.| +.++...
T Consensus       208 g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l-~~~g~~~  285 (364)
T d2e7ja1         208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDE-EVEKARRFAAEM-EKLGIKQ  285 (364)
T ss_dssp             SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHH-HHHHHHHHHHHH-HHTTCEE
T ss_pred             CCEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHcCCee
Confidence            56899999988777665421110     0   01122233334445554432  22333 335666777888 5554211


Q ss_pred             CCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceec-cCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         167 VPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTK-PISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~-~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ....+.......+..+...       .....+...+..+|+... ++....+|++ ++..|+|++++++++|++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         286 LGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             ESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence            1111111222333322110       112235566777787654 3445566765 3556999999999999999876

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.66  E-value=2.1e-16  Score=133.29  Aligned_cols=211  Identities=11%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             CChhh--hcCC----CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548          10 KQVPA--KLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus        10 ~d~~~--~~~~----~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      .|+++  +.+.    .+++.+|+++.+.+++|.+.+    +++|+++|++||+++++|++|.+.................
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~  269 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  269 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc
Confidence            45666  3333    357888888888888886655    9999999999999999999996421111111111112356


Q ss_pred             CEEEee--ccccCCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Q psy6548          84 DIVILG--KALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        84 ~~~~~s--K~~~~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~  157 (242)
                      |+++++  |.++++ .+.|++.. .+..++++.+...+.+...+   ...+++++..+..   .++.++..++.++++++
T Consensus       270 D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~  345 (434)
T d2z67a1         270 DAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRASATP---VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  345 (434)
T ss_dssp             SEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBCSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccC-CCccccccCcHHHHHHHHhhcccccccch---HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            888865  999976 56666654 46677777654333332222   2222333333322   34567777888888888


Q ss_pred             HHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---------------CCCCEEEEeccCcCCH
Q psy6548         158 LRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---------------ISNNIIRLSPALNITE  220 (242)
Q Consensus       158 l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---------------~~~~~lR~~~~~~~t~  220 (242)
                      | +++..  ..............+...   .+..++...|.++||....               ...+++|++++..+|+
T Consensus       346 L-~~l~~~~g~~ll~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~  421 (434)
T d2z67a1         346 L-NDLSKKTGGKFLDVESPIASCISVN---SDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRT  421 (434)
T ss_dssp             H-HHHHHHSSCCBCCCCCSSEEEEECS---SCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCH
T ss_pred             H-HHhhhhcCceecCCCCCceeeeecC---CCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCH
Confidence            8 55421  111111112222333332   3577899999999986521               1357899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         221 QELREGLDIIIN  232 (242)
Q Consensus       221 e~i~~~~~~l~~  232 (242)
                      ||||+++++|++
T Consensus       422 edID~~i~~L~k  433 (434)
T d2z67a1         422 EDIVNSVSKLEK  433 (434)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999976

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=1.4e-16  Score=132.82  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=126.0

Q ss_pred             CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--cccc-CCCCCCE---EEeecc
Q psy6548          18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHY-EDVRPDI---VILGKA   91 (242)
Q Consensus        18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~-~~~~~~~---~~~sK~   91 (242)
                      .++++.++++.+++||+| ..++++.+++|+++|++|++++|+||+|.++...+...  .... .......   .++||.
T Consensus       166 ~~~~~~i~~~~~p~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  244 (394)
T d2ay1a_         166 AKKGDMVLLHGCCHNPTG-ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKN  244 (394)
T ss_dssp             CCTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred             cccCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccc
Confidence            466788999999999999 66788999999999999999999999999875443211  1000 0011222   237898


Q ss_pred             cc-CCccchheeEeChhhhhccCCC------CCCCCC-CCCHHHHHHHHHHHHH------HHh--ccHHHHHHHHHHHHH
Q psy6548          92 LS-GGLYPISAVLADDEVMGTLVPG------THGSTY-GGNPLACKLAMTALDV------ILE--ENMIENAYKMGEIFR  155 (242)
Q Consensus        92 ~~-~g~~~~g~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~~~a~a~l~~------~~~--~~~~~~~~~~~~~l~  155 (242)
                      ++ .| +|+||+.+.....+.....      .....+ ..+...+..+...+..      +..  +.+.++++++++.+.
T Consensus       245 ~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~  323 (394)
T d2ay1a_         245 FGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA  323 (394)
T ss_dssp             TTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc-ccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88 78 9999998876554433211      011111 2222333322222211      111  234566677777788


Q ss_pred             HHHHhhcC-CC-CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         156 SELRSRLS-PD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       156 ~~l~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      +.| +.++ .. +....+..|+|.|+.+.      .+++++|+ ++||.+.|++    ||+++. .++++|+++.++|.+
T Consensus       324 ~~L-~~~~~~~~~~~~~~~~G~F~~~~ls------~~~~~~L~~~~~V~~~~g~----Ri~~a~-l~~~~i~~l~~ai~~  391 (394)
T d2ay1a_         324 GEL-RDLSGSDRFGFVAEHRGMFSRLGAT------PEQVKRIKEEFGIYMVGDS----RINIAG-LNDNTIPILARAIIE  391 (394)
T ss_dssp             HHH-HHHHTSSTTTHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTTC----EEEGGG-CCTTTHHHHHHHHHH
T ss_pred             HHH-HHhCCCCceeeECCCceeEEecCcC------HHHHHHHHHhCCEEecCCC----EEEecC-CCHHHHHHHHHHHHH
Confidence            888 4443 22 22234556788887543      24566675 6799998863    888543 477889988888876


Q ss_pred             H
Q psy6548         233 T  233 (242)
Q Consensus       233 ~  233 (242)
                      +
T Consensus       392 v  392 (394)
T d2ay1a_         392 V  392 (394)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.63  E-value=5.5e-15  Score=121.90  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccC
Q psy6548          17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG   94 (242)
Q Consensus        17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~   94 (242)
                      ..++++..+.+..+.+.+|.+.|    ++++.++|+++|+++++|.+|+ +|..  ...++  ....|++++|  |+++|
T Consensus       139 ~~~~~~~~v~~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~g  209 (377)
T d1vjoa_         139 LETHRPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PIFLD--AWGVDLAYSCSQKGLGC  209 (377)
T ss_dssp             HHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCS
T ss_pred             hhcCcceeeeeeeeeccceeeec----hhhhhhhhhhccceEEEecchh-hhhh--hhccc--ccccceeeecccccccC
Confidence            34567888889999999998877    8899999999999999999996 2212  22223  4456887755  78876


Q ss_pred             CccchheeEeChhhhhccCCCCCC-------------------CCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHH
Q psy6548          95 GLYPISAVLADDEVMGTLVPGTHG-------------------STY-GGNPLACKLAMTALDVILE---ENMIENAYKMG  151 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~~~-------------------~~~-~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~  151 (242)
                      + ..+|++..++..++...+....                   .+. ..+........++.+....   +...++.+++.
T Consensus       210 p-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  288 (377)
T d1vjoa_         210 S-PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNV  288 (377)
T ss_dssp             C-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             C-CEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHh
Confidence            6 5678888888777655432111                   111 1222233333344443333   34566677777


Q ss_pred             HHHHHHHHhhcCCCCCCeE-eeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC----CCCEEEEec-cCcCCHHHHH
Q psy6548         152 EIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI----SNNIIRLSP-ALNITEQELR  224 (242)
Q Consensus       152 ~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~----~~~~lR~~~-~~~~t~e~i~  224 (242)
                      .++++.+ ...+....... ......+.+.+++. .+.+++.+.|.+ .||.+..+    .++.+|+++ ++..++|||+
T Consensus       289 ~~l~~~l-~~~~~~~~~~~~~rs~~v~~~~~p~~-~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~  366 (377)
T d1vjoa_         289 EYLWERL-EDIGLSLHVEKEYRLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVD  366 (377)
T ss_dssp             HHHHHHH-HHTTCCBSSCGGGBCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred             hhhhhhh-hccCceeecChHhcCCeEEEEECCCC-CCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHH
Confidence            8888888 55443222221 12334556677665 678999988865 59998653    457899984 6777899999


Q ss_pred             HHHHHHHHHHH
Q psy6548         225 EGLDIIINTIN  235 (242)
Q Consensus       225 ~~~~~l~~~l~  235 (242)
                      ++++.|+++++
T Consensus       367 ~lv~al~~~l~  377 (377)
T d1vjoa_         367 QLIPALEQVLR  377 (377)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998873

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=8.5e-15  Score=121.17  Aligned_cols=212  Identities=17%  Similarity=0.142  Sum_probs=143.8

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCCCCCCEEEee--c
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--K   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K   90 (242)
                      +.+.+++++.+++..+.+++|...+    ++++.++|++|+  +++++|.+++ +|.  .+..++.+  ..|++++|  |
T Consensus       129 ~~~~~~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~--~pid~~~~--giD~~~~s~~K  199 (382)
T d2bkwa1         129 EKLSQNSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGC--EEFEFDEW--GVDFALTASQK  199 (382)
T ss_dssp             HHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTT--SCCCTTTT--TCSEEEEESSS
T ss_pred             HHhhhccchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-ccc--cccccccc--CeeEEeecccc
Confidence            3444678899999999999998887    888888888775  9999999996 221  22333333  46888866  9


Q ss_pred             cccCCccchheeEeChhhhhccCCCC-------------------------C-CCCCCCCHHHHHHHHHHHHHHHhcc--
Q psy6548          91 ALSGGLYPISAVLADDEVMGTLVPGT-------------------------H-GSTYGGNPLACKLAMTALDVILEEN--  142 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~~~~~~~l~~~~-------------------------~-~~~~~~~~~~~~~a~a~l~~~~~~~--  142 (242)
                      +++|+ .++|+++.+++.++.+.+..                         . ...++.+.....+..++++.+..++  
T Consensus       200 ~l~gP-~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~  278 (382)
T d2bkwa1         200 AIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLH  278 (382)
T ss_dssp             TTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             cCcCC-CchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhh
Confidence            99877 77999999998877665420                         0 1122445556777778888876643  


Q ss_pred             -HHHHHHHHHHHHHHHHHhhcCCC-CCCeEe--eeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEe
Q psy6548         143 -MIENAYKMGEIFRSELRSRLSPD-IVPVVR--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLS  213 (242)
Q Consensus       143 -~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~  213 (242)
                       ..++.+++.+++++.+.+.++.. ......  ....++.+..++    ..++.+.|.++||.++.+     +++.+|++
T Consensus       279 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~----~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~  354 (382)
T d2bkwa1         279 KRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIG  354 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCTTTGGGEEEEC
T ss_pred             hhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC----HHHHHHHHHHCCeEEECCCChhhcCCEEEEe
Confidence             34556677788888883333211 111111  122344555554    467888999999999865     24679998


Q ss_pred             -ccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548         214 -PALNITEQELREGLDIIINTINTMAAK  240 (242)
Q Consensus       214 -~~~~~t~e~i~~~~~~l~~~l~~~~~~  240 (242)
                       +.+..++|+++++++.|+.+...+++|
T Consensus       355 ~~G~~~~~e~i~~l~~~l~~i~~~L~~~  382 (382)
T d2bkwa1         355 HMGVTACNKNLPYMKNCFDLIKLALQRK  382 (382)
T ss_dssp             CCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHCcC
Confidence             556667888999999998777766553

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.62  E-value=1.3e-15  Score=129.59  Aligned_cols=217  Identities=16%  Similarity=0.097  Sum_probs=128.7

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc------CccCcccccccCC------CCCCEE
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL------GRTGKLLAIHYED------VRPDIV   86 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~------~~~g~~~~~~~~~------~~~~~~   86 (242)
                      ++.++++++++.++.+|..+++.+++++++++|++||+++|+||+|...      ++.+..+.....+      -..|++
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~  259 (465)
T d1ax4a_         180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL  259 (465)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEE
T ss_pred             cccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhcccccccccee
Confidence            4578999999999999989999999999999999999999999998521      1111111111111      124788


Q ss_pred             EeeccccCCccchheeEeChh--hhhccCC----CCCCCCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          87 ILGKALSGGLYPISAVLADDE--VMGTLVP----GTHGSTYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        87 ~~sK~~~~g~~~~g~~~~~~~--~~~~l~~----~~~~~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      ++||..+++..+.|++..+++  .......    .....++.. ...++.++...+.....+++.++..++.+++++.| 
T Consensus       260 s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L-  338 (465)
T d1ax4a_         260 TMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL-  338 (465)
T ss_dssp             EEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred             EeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHH-
Confidence            888877733266677776543  2221111    112222222 22333322222332223456677777889999999 


Q ss_pred             hhcCCCCCCeEeeeceeEEEEecC-------CchhHHH-HHHHHHHCCceecc-----------------CCCCEEEEe-
Q psy6548         160 SRLSPDIVPVVRGKGLLNAIVLDK-------SILEVYD-VCIKMKDAGLVTKP-----------------ISNNIIRLS-  213 (242)
Q Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~l~~~gi~~~~-----------------~~~~~lR~~-  213 (242)
                      ++.+......  ..+....+....       ....... ..+.+.+.||-...                 ...+.+|++ 
T Consensus       339 ~~~g~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlal  416 (465)
T d1ax4a_         339 REAGIPIQYP--TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTI  416 (465)
T ss_dssp             HHTTCCBCSS--CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred             HhhcCccccC--CCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeC
Confidence            6665333222  222333332211       1122333 44445567876531                 124589997 


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         214 PALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |....|+||+|++++.|++++++..
T Consensus       417 P~~~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         417 ARRVYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             CTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567799999999999999887643

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=2.1e-15  Score=121.77  Aligned_cols=204  Identities=10%  Similarity=0.019  Sum_probs=118.0

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEeeccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~sK~~~~g~~   97 (242)
                      ..+..++++..+++.+...++.++++++.++|++||+++++|++|.+....+..........  ..+..+++|..+++ .
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  211 (345)
T d1v72a1         133 HTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-L  211 (345)
T ss_dssp             TSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-S
T ss_pred             ccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc-c
Confidence            34566667776666666777888999999999999999999999975433322222222222  33455566666544 3


Q ss_pred             chheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548          98 PISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK  173 (242)
Q Consensus        98 ~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  173 (242)
                      ..+..... ................+.+... .++.++......   ........++...+.+.+ ..++. +....+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g-~~~~~p~~  288 (345)
T d1v72a1         212 AAEAIVLFNTSLATEMSYRRKRAGHLSSKMR-FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGL-EGLGG-VEVLGGTE  288 (345)
T ss_dssp             SCEEEEESSGGGHHHHHHHHHHTTCCCSSTH-HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-TTCTT-EEEESCCC
T ss_pred             cccccccchhhhhhhccccccccccccchhh-HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHH-HhcCC-cEeccCCC
Confidence            33333333 2222111111011111112122 122222232222   223344445555566666 55442 11111334


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceecc--CCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINT  233 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~--~~~~~lR~~~~~~~t~e~i~~~~~~l~~~  233 (242)
                      ++++++.++.      +++++|+++|+.+.+  .+++.+||+++..+|+||||++++.|+++
T Consensus       289 ~niv~~~~~~------~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         289 ANILFCRLDS------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             SSEEEEEECH------HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ccEEEEEcCH------HHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5677777643      467889999998854  36789999999999999999999999874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.59  E-value=3.2e-14  Score=117.82  Aligned_cols=212  Identities=17%  Similarity=0.155  Sum_probs=138.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~   92 (242)
                      ....++++.++++..+.+.+|...+    ++++.++|+++|+++++|.+++ ++  +.+..++  ....|++++|  |++
T Consensus       136 ~~~~~~~~~~v~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g--~~pid~~--~~~~d~~~~s~~K~~  206 (388)
T d2ch1a1         136 RAIELHQPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMD--KWEIDAVYTGAQKVL  206 (388)
T ss_dssp             HHHHHHCCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTT--TTTCCEEECCCC-CC
T ss_pred             hhhccCCcceeeeeecccccccccc----hhhhcchhccccceeeeeeeec-cc--ccccchh--ccCceEEEEcccccc
Confidence            3334567889999999999997777    7788899999999999999996 22  1222233  3456888866  788


Q ss_pred             cCCccchheeEeChhhhhccCCCC----------------------CCC-CCCCCHHHHHHHHHHHHHHHhcc---HHHH
Q psy6548          93 SGGLYPISAVLADDEVMGTLVPGT----------------------HGS-TYGGNPLACKLAMTALDVILEEN---MIEN  146 (242)
Q Consensus        93 ~~g~~~~g~~~~~~~~~~~l~~~~----------------------~~~-~~~~~~~~~~~a~a~l~~~~~~~---~~~~  146 (242)
                      ++. .++|++..+++..+......                      ... ..+.+...+.++.++++.+....   ..++
T Consensus       207 ~gp-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~  285 (388)
T d2ch1a1         207 GAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKR  285 (388)
T ss_dssp             CCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCC-CeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            866 66888888877666443211                      111 12333445555556666554432   2333


Q ss_pred             HHHHHHHHHHHHHhhcCCC-CCCe-EeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEe-ccCcC
Q psy6548         147 AYKMGEIFRSELRSRLSPD-IVPV-VRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLS-PALNI  218 (242)
Q Consensus       147 ~~~~~~~l~~~l~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~-~~~~~  218 (242)
                      .++.....+..+ ...... .... ......++.+.+++. .+..++.+.|.++ ||.++++    .++.+|++ +...+
T Consensus       286 ~~~~~~~~~~~~-~~~~~~~~~~~~~~rs~~v~~~~~p~g-~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~  363 (388)
T d2ch1a1         286 RIECAQILYEGL-GKMGLDIFVKDPRHRLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS  363 (388)
T ss_dssp             HHHHHHHHHHHH-HHHTCCBSSCSGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGC
T ss_pred             HHHHHHHHHhhh-hhcccccccCCHHHhCCeEEEEECCCC-CCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCC
Confidence            333444444444 333321 1111 122334667888765 6788999998765 9998865    35689999 56777


Q ss_pred             CHHHHHHHHHHHHHHHHHHh
Q psy6548         219 TEQELREGLDIIINTINTMA  238 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~~  238 (242)
                      |+|+|+++++.|+++++++.
T Consensus       364 t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         364 TVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999864

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4.3e-15  Score=125.48  Aligned_cols=213  Identities=9%  Similarity=0.057  Sum_probs=132.0

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC-ccCcc--cccccCCCCCCEEEee--cccc
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKL--LAIHYEDVRPDIVILG--KALS   93 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~-~~g~~--~~~~~~~~~~~~~~~s--K~~~   93 (242)
                      +.++++|++..+.+++|.+.+    +++|+++|++||+++++|++|.+.. .....  +....  -..|+++++  |.++
T Consensus       192 ~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~vd~~~~s~hK~~~  265 (445)
T d3bc8a1         192 PEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV--GRIDAFVQSLDKNFM  265 (445)
T ss_dssp             GGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH--SCCCEEEEEHHHHHS
T ss_pred             ccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc--CCcceEEecCccccc
Confidence            457999999999888887665    9999999999999999999996421 11111  11111  135777755  9998


Q ss_pred             CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcC---CCC
Q psy6548          94 GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLS---PDI  166 (242)
Q Consensus        94 ~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~---~~~  166 (242)
                      ++ .+.|+++.. +...+.+.....+.   .+......+++.+..+..   ........++.+++++.| +.+.   ...
T Consensus       266 ~p-~g~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L-~~l~~~~~~~  340 (445)
T d3bc8a1         266 VP-VGGAIIAGFNEPFIQDISKMYPGR---ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL-KKLAEAHNER  340 (445)
T ss_dssp             CC-SSCEEEEESCHHHHHHHHHHSCSC---BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCC
T ss_pred             cC-CCCceeeeCChHHHHHHHHHHhhc---ccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH-HHHHhhcCce
Confidence            76 566777665 45555544322222   222222233444433322   234455666677777777 4332   111


Q ss_pred             CCeEeeeceeEEEEecCC----chhHHHHHHHHHHCCceecc----C--------------------CCCEEEEeccCcC
Q psy6548         167 VPVVRGKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKP----I--------------------SNNIIRLSPALNI  218 (242)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~----~--------------------~~~~lR~~~~~~~  218 (242)
                      ....+......++.+...    ..+..++...|.+.||....    .                    ...++|++++...
T Consensus       341 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~  420 (445)
T d3bc8a1         341 LLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGM  420 (445)
T ss_dssp             BCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTC
T ss_pred             eecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCC
Confidence            122222333344433221    15677788899998874321    0                    1356999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhcC
Q psy6548         219 TEQELREGLDIIINTINTMAAKKT  242 (242)
Q Consensus       219 t~e~i~~~~~~l~~~l~~~~~~~~  242 (242)
                      |+||||++++.|++++++++++++
T Consensus       421 T~eDID~~v~~L~kilk~~rk~~~  444 (445)
T d3bc8a1         421 KMQDVDLFIKRLDKCLNIVRKEQT  444 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999987653

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=3.1e-13  Score=111.43  Aligned_cols=208  Identities=18%  Similarity=0.183  Sum_probs=130.9

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-   87 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-   87 (242)
                      +++ ....+++|+++++..+++++|.+.+    ++++.++++.+  ++++++|.+|. ++..  +.  +.....+|+++ 
T Consensus       129 ~~~l~~~i~~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~--~~--d~~~~~~D~~~~  199 (376)
T d1eg5a_         129 LEELEKLVDEDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PF--SLEKLEVDYASF  199 (376)
T ss_dssp             HHHHHHHCCTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CC--CCTTTCCSEEEE
T ss_pred             HHHHHHhcCCCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc--cc--cccccCccceec
Confidence            444 5556789999999999999998877    88889988665  89999999995 2211  12  22234567777 


Q ss_pred             -eeccccCCccchheeEeChhhhhccCCCCCCCC-------CCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Q psy6548          88 -LGKALSGGLYPISAVLADDEVMGTLVPGTHGST-------YGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSE  157 (242)
Q Consensus        88 -~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~  157 (242)
                       +.|++| + .+.|++...++.  .+++...+++       ...+......+.++......  ............++.+.
T Consensus       200 s~~K~~g-p-~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (376)
T d1eg5a_         200 SAHKFHG-P-KGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSG  275 (376)
T ss_dssp             EGGGGTS-C-TTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeec-C-CCceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccc
Confidence             459976 3 445666665542  3444322211       12233333333333333222  23445555666777777


Q ss_pred             HHhhcCCC-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548         158 LRSRLSPD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS  213 (242)
Q Consensus       158 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~  213 (242)
                      | +..... .............+.++.  .+...+...|.++||.++.+.                       ++.+|++
T Consensus       276 l-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS  352 (376)
T d1eg5a_         276 L-MNLGAHIITPLEISLPNTLSVSFPN--IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRIS  352 (376)
T ss_dssp             H-HTTTCEECSCTTSBCTTEEEEECTT--CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEE
T ss_pred             c-ccccccccccccccccceeeeccCC--CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEe
Confidence            7 444321 111112223344555555  467888999999999886431                       2469999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHH
Q psy6548         214 PALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       214 ~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ++.++|+||||++++.|+++++
T Consensus       353 ~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         353 LCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999876

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.2e-13  Score=117.33  Aligned_cols=224  Identities=12%  Similarity=0.064  Sum_probs=129.7

Q ss_pred             CCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-c--CccCcccccccC-
Q psy6548           9 SKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L--GRTGKLLAIHYE-   79 (242)
Q Consensus         9 ~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~--~~~g~~~~~~~~-   79 (242)
                      +.|+++  +.+.   ...++++++|++++.+|..+++.+++++++++|++||+++++|+++.. .  ...+........ 
T Consensus       166 ~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~  245 (467)
T d2v1pa1         166 NFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT  245 (467)
T ss_dssp             CBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSC
T ss_pred             CCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCc
Confidence            455666  2222   356899999999999999999999999999999999999999999842 1  011111111111 


Q ss_pred             --------CCCCCEEEee--ccccCCccchheeEeChhhhh-ccC-------CCCCCCCCCCCHH-HHHHHHHHHHHHHh
Q psy6548          80 --------DVRPDIVILG--KALSGGLYPISAVLADDEVMG-TLV-------PGTHGSTYGGNPL-ACKLAMTALDVILE  140 (242)
Q Consensus        80 --------~~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~-~l~-------~~~~~~~~~~~~~-~~~~a~a~l~~~~~  140 (242)
                              .-..|+++++  |.++++  ..|++..+++... ...       ......++..... .+.+....+.....
T Consensus       246 ~~~i~~~~~~~~d~~s~s~~K~~~~~--~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  323 (467)
T d2v1pa1         246 IEQITRETYKYADMLAMSAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN  323 (467)
T ss_dssp             HHHHHHHHGGGCSEEEEESSSTTCCS--SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccchhhcccCCEEEecCCCCCCCC--CceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh
Confidence                    1235788876  455533  2445555543322 111       0112233333333 33333333443334


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEe----cC---CchhHHH-HHHHHHHCCceec---------
Q psy6548         141 ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL----DK---SILEVYD-VCIKMKDAGLVTK---------  203 (242)
Q Consensus       141 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~-~~~~l~~~gi~~~---------  203 (242)
                      +++.++..++.+++++.| ++.+..   ..+..+....+..    +.   ....... ..+.+.+.||-..         
T Consensus       324 ~~~~~~~~~~~~~l~~~L-~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~  399 (467)
T d2v1pa1         324 LDWLAYRIAQVQYLVDGL-EEIGVV---CQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR  399 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTCC---EEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCCc---ccCCCccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeeccccccccc
Confidence            567788888999999999 665421   1122222222211    11   1022333 3344456676432         


Q ss_pred             --------cCCCCEEEEecc-CcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         204 --------PISNNIIRLSPA-LNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       204 --------~~~~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                              +.....+|++++ ..+|+||||++++.|+++.++..
T Consensus       400 ~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~  443 (467)
T d2v1pa1         400 DPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             CTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             ccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                    224568999854 56799999999999999987543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.49  E-value=4.8e-13  Score=113.33  Aligned_cols=215  Identities=10%  Similarity=-0.058  Sum_probs=130.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCc-ccccccCC------CCCCEEEe--
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGK-LLAIHYED------VRPDIVIL--   88 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~-~~~~~~~~------~~~~~~~~--   88 (242)
                      ..++..+++..+++..|.+.+    +++|+++|++||+++++|++|.. +...+. .......+      ...|++++  
T Consensus       171 ~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~  246 (462)
T d1c4ka2         171 WKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSV  246 (462)
T ss_dssp             CSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECH
T ss_pred             ccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEec
Confidence            456677777888888897777    99999999999999999999953 221211 10111111      12367775  


Q ss_pred             eccccCCccchheeEeChhhhhccCCC----------CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Q psy6548          89 GKALSGGLYPISAVLADDEVMGTLVPG----------THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFR  155 (242)
Q Consensus        89 sK~~~~g~~~~g~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~  155 (242)
                      .|.+++. -..+++..+..........          ....+.+.+...++...++...+..   +++.++..++..+++
T Consensus       247 HK~lg~~-~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r  325 (462)
T d1c4ka2         247 HKQQAGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEAR  325 (462)
T ss_dssp             HHHSSCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccccccc-cceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4999853 2233343443333221111          0112334455555554455555433   345667777888888


Q ss_pred             HHHHhhcCCCCC----CeEe----------------------------------eec-----eeEEEEecC---------
Q psy6548         156 SELRSRLSPDIV----PVVR----------------------------------GKG-----LLNAIVLDK---------  183 (242)
Q Consensus       156 ~~l~~~l~~~~~----~~~~----------------------------------~~~-----~~~~~~~~~---------  183 (242)
                      +++ +.+.....    ....                                  ...     .-+.+..+.         
T Consensus       326 ~~l-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~  404 (462)
T d1c4ka2         326 KKL-IKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYE  404 (462)
T ss_dssp             HHH-HHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEEC
T ss_pred             HHH-HHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchh
Confidence            888 55432100    0000                                  000     001222111         


Q ss_pred             -CchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548         184 -SILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA  239 (242)
Q Consensus       184 -~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~  239 (242)
                       .+....++.+.|.++||.+...+.+.+|++++..+|+++++++++.|.++.+.+.+
T Consensus       405 ~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~  461 (462)
T d1c4ka2         405 DFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE  461 (462)
T ss_dssp             SSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence             11246788899999999887778899999999999999999999999998776543

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.40  E-value=1.8e-13  Score=109.21  Aligned_cols=207  Identities=13%  Similarity=0.108  Sum_probs=113.3

Q ss_pred             CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548          20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRPDIVILGKALSGGLY   97 (242)
Q Consensus        20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~   97 (242)
                      .....+++....+++|.+. ..+.+..+.+.|+++|.++++|+++.+.  ...+.............+...++..+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (340)
T d1svva_         129 MVIPKLVYISNTTEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF  207 (340)
T ss_dssp             SCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS
T ss_pred             CCcceeeeecccccccccc-cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc
Confidence            3455555555555666444 4567899999999999999999999642  111111111111112334555555553212


Q ss_pred             chheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeece
Q psy6548          98 PISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGL  175 (242)
Q Consensus        98 ~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~  175 (242)
                      ..++..............  ....+........+++.+.++........++..+++.+++..+ +.++-.+.  .+..++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~--~p~~~~  284 (340)
T d1svva_         208 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLA--WPSASN  284 (340)
T ss_dssp             CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBS--SCCSSS
T ss_pred             cccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHH-hcCCCeee--cCCCce
Confidence            233333333332222211  1112222222232222222221112345677777888888888 66653222  234456


Q ss_pred             eEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548         176 LNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN  232 (242)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~  232 (242)
                      ++++.++.+  ....+.+.+...++.+.+.+++++|++++..+|+||||++++.|++
T Consensus       285 ~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         285 QLFPILENT--MIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             EECBEEEHH--HHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCHH--HHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            666666542  3333333333335556677889999999999999999999999976

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.4e-11  Score=103.77  Aligned_cols=225  Identities=8%  Similarity=-0.024  Sum_probs=141.4

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHH------HHhhCCEEEEeccccccCc-cCcccccccCCC-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL------CSQYNVLFIADEVQTGLGR-TGKLLAIHYEDV-   81 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l------~~~~~~~li~De~~~~~~~-~g~~~~~~~~~~-   81 (242)
                      |+++ +...+.++++|++.-..+.+|.+-|    ++++.++      |++||+++.+|.++.|+.. .......-.+++ 
T Consensus       188 d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~  263 (450)
T d1pmma_         188 DPKRMIEACDENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP  263 (450)
T ss_dssp             CHHHHHHHCCTTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST
T ss_pred             cHHHHHHHhhhCceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhccc
Confidence            3445 5556778999888888888887666    5555444      5778999999999976421 110000001122 


Q ss_pred             CCCEEEee--ccccCCccchheeEeChhh-hhccCCC---C-------CCCCCCCCHHHHHHHHHHHHHHHh---ccHHH
Q psy6548          82 RPDIVILG--KALSGGLYPISAVLADDEV-MGTLVPG---T-------HGSTYGGNPLACKLAMTALDVILE---ENMIE  145 (242)
Q Consensus        82 ~~~~~~~s--K~~~~g~~~~g~~~~~~~~-~~~l~~~---~-------~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~  145 (242)
                      ..|.++++  |.++++ +++|+++..++. .......   .       ....++.+.....+.++.++.+..   +++.+
T Consensus       264 ~aDSi~~s~HK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~  342 (450)
T d1pmma_         264 RVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQN  342 (450)
T ss_dssp             TEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEeecChhhccCCC-CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHH
Confidence            35666655  988877 789999876432 2111110   0       011122223344445555554433   34667


Q ss_pred             HHHHHHHHHHHHHHhhcCCC-CCCe--EeeeceeEEEEecCCc---hhHHHHHHHHHHCCceec----cC---CCCEEEE
Q psy6548         146 NAYKMGEIFRSELRSRLSPD-IVPV--VRGKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTK----PI---SNNIIRL  212 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~~-~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~----~~---~~~~lR~  212 (242)
                      +..++++++.++| ++.+.. +...  +...-+.+.|.+.+..   .+..++.+.|.++|..+.    |.   +...+|+
T Consensus       343 ~~~~la~~l~~~L-~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRv  421 (450)
T d1pmma_         343 ASYQVAAYLADEI-AKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRI  421 (450)
T ss_dssp             HHHHHHHHHHHHH-HTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEE
T ss_pred             HHHHHHHHHHHHH-HhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEE
Confidence            7788999999999 666531 1111  1122345677765432   457789999999997763    22   3457999


Q ss_pred             eccCcCCHHHHHHHHHHHHHHHHHHhhhc
Q psy6548         213 SPALNITEQELREGLDIIINTINTMAAKK  241 (242)
Q Consensus       213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~~  241 (242)
                      .+....|.++++++++.|+++++.+.++|
T Consensus       422 vv~~~~t~e~~d~lv~dl~~~v~~l~~~p  450 (450)
T d1pmma_         422 MCRRGFEMDFAELLLEDYKASLKYLSDHP  450 (450)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            98888899999999999999999988764

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=1.7e-12  Score=106.47  Aligned_cols=214  Identities=12%  Similarity=0.166  Sum_probs=132.3

Q ss_pred             ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      .++.+|++. +...++++++|++|.+.|++..++.    +++++++|++||+++|+|.+...      +..++-.....|
T Consensus       117 ~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at------P~~~~Pl~~GaD  186 (380)
T d1ibja_         117 RVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS------PVLSRPLELGAD  186 (380)
T ss_dssp             EECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC------TTTCCGGGTTCS
T ss_pred             ccCcchHHHHHHHhccCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccc------cccccccccCCC
Confidence            456677777 6666889999999999999997775    99999999999999999998742      122222234568


Q ss_pred             EEE--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548          85 IVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS  160 (242)
Q Consensus        85 ~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~  160 (242)
                      +++  .+|.++|.- .-.|.++.+ +.+.+.+...........+|..+......++.+.  -..++..+++..+.+.| +
T Consensus       187 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--lRm~~~~~nA~~lA~~L-~  263 (380)
T d1ibja_         187 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYL-S  263 (380)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH-H
T ss_pred             EEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHH-H
Confidence            777  669998420 224555544 5565555432111112345555544444444332  24566778888888889 6


Q ss_pred             hcCCC-------CC---------CeEeeeceeEEEEecCCchhHHHHHHHHH--HCCcee--------ccC---------
Q psy6548         161 RLSPD-------IV---------PVVRGKGLLNAIVLDKSILEVYDVCIKMK--DAGLVT--------KPI---------  205 (242)
Q Consensus       161 ~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~--------~~~---------  205 (242)
                      +.+..       ..         ....+.|.++.+.+.+. ..+..|.+.|.  ..+.-+        .|.         
T Consensus       264 ~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~-~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~  342 (380)
T d1ibja_         264 SHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV-ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPA  342 (380)
T ss_dssp             TCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH-HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCS
T ss_pred             hCCCeeEEeccccccCccccccccccccccccccccccHH-HHHHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCH
Confidence            54431       10         01123456667766654 55666766663  112111        110         


Q ss_pred             --------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         206 --------SNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       206 --------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                              .++.+|++.    ..|+.+.+++.|+++++++
T Consensus       343 e~r~~~Gi~~~lvRlSv----GlE~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         343 EVREARGLTEDLVRISA----GIEDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             SSSSSSSCCTTCEEEEC----CSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCcCeEEEEe----ccCCHHHHHHHHHHHHHhc
Confidence                    246899993    3467777888888888754

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=4.4e-12  Score=104.16  Aligned_cols=215  Identities=14%  Similarity=0.132  Sum_probs=133.4

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++..|++. +...+++|++|++|.+.|++..++.    +++++++|+++|+++++|.+++.      +..++-+....
T Consensus       127 ~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at------P~~~~Pl~~Ga  196 (392)
T d1gc0a_         127 RHVDMADLQALEAAMTPATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT------PYLQRPLELGA  196 (392)
T ss_dssp             EEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH------HHHCCGGGGTC
T ss_pred             ccCCccCHHHHHHhCCCCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC------ccccChHHhCC
Confidence            4466677777 6667789999999999999997776    99999999999999999998741      12222234456


Q ss_pred             CEEE--eeccccC-CccchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSG-GLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        84 ~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      |+++  .+|.++| +-.-.|.+.++++.+.+++..  ........+|..+...+..++.+.  -..++..+++..+.+.|
T Consensus       197 DivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~--lRm~~~~~nA~~lA~~L  274 (392)
T d1gc0a_         197 DLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFL  274 (392)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH--HHHHHHHHHHHHHHHHH
Confidence            8877  6699984 213356677887776554311  111112345665555444454433  24566777888888888


Q ss_pred             HhhcCCC----------------CCCeEeeeceeEEEEecCCchhHHHHHHHHHH--CCceec--------c--------
Q psy6548         159 RSRLSPD----------------IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVTK--------P--------  204 (242)
Q Consensus       159 ~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~~--------~--------  204 (242)
                       +..+..                ......+.|.++.|.+......+..|.+.|.-  .+.-+.        |        
T Consensus       275 -~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~  353 (392)
T d1gc0a_         275 -ARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSY  353 (392)
T ss_dssp             -HTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSS
T ss_pred             -HhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccccccccC
Confidence             554420                01112233667888886542334566666642  121111        1        


Q ss_pred             ---------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         205 ---------ISNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       205 ---------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                               ..++.+|+++.    .|+.+.+++.|+++++.
T Consensus       354 ~~e~r~~~Gi~~~liRlSVG----lEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         354 TPEERAHYGISEGLVRLSVG----LEDIDDLLADVQQALKA  390 (392)
T ss_dssp             CHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCcCeEEEEee----eCCHHHHHHHHHHHHHh
Confidence                     03578999944    46677777777777764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.35  E-value=2.5e-12  Score=105.86  Aligned_cols=214  Identities=15%  Similarity=0.152  Sum_probs=134.5

Q ss_pred             cCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           7 VKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         7 ~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      ++-.|.+.  +.+.++++++|++|.+-|++-.++.    +++++++|++||+++|+|.+...      +..++-+....|
T Consensus       137 ~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at------P~~~~Pl~~GaD  206 (398)
T d1qgna_         137 IDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT------PLNQKALALGAD  206 (398)
T ss_dssp             ECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCTTTTTCS
T ss_pred             ccccchhhhhhhhccccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeec------cccCCchhhCCC
Confidence            33344443  4556789999999999999987665    99999999999999999988641      223333455678


Q ss_pred             EEE--eeccccCC-ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          85 IVI--LGKALSGG-LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        85 ~~~--~sK~~~~g-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +++  .+|.++|. =.-.|.+..+++++..++..........+|..+...+..++.+.  -..++..+++..+.+.| +.
T Consensus       207 iVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~--lRm~~~~~nA~~lA~~L-~~  283 (398)
T d1qgna_         207 LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEIL-EA  283 (398)
T ss_dssp             EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHH-HT
T ss_pred             EEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHH-Hh
Confidence            888  66998842 02355667777777666542221112345555544444444332  23566777888888888 55


Q ss_pred             cCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHH--HCCceec--------c-----------
Q psy6548         162 LSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMK--DAGLVTK--------P-----------  204 (242)
Q Consensus       162 l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~~--------~-----------  204 (242)
                      .+.       +...         ...+.|.++.|.+..+...+..|.+.|.  ..+.-+.        |           
T Consensus       284 hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~  363 (398)
T d1qgna_         284 HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS  363 (398)
T ss_dssp             CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHH
T ss_pred             CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHH
Confidence            443       1111         1123467788887665345666777763  2222211        1           


Q ss_pred             ------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 ------ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 ------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                            ..++.||++    ...|+.+.+++.|+++++++
T Consensus       364 ~~~~~Gi~~~liRlS----vGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         364 DRAKYGIMDNLVRFS----FGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHTTTCCSSEEEEE----CCSSCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCCcCEEEEE----eccCCHHHHHHHHHHHHhcC
Confidence                  035789999    34567777888888887753

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.35  E-value=4.8e-12  Score=104.02  Aligned_cols=216  Identities=12%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      +..++.+|++. +...+++|++|++|.+-|++..++.    +++++++|+++|+++++|.+...      +..++-....
T Consensus       130 ~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at------P~~~~Pl~~G  199 (397)
T d1y4ia1         130 VRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS------PYCQQPLQLG  199 (397)
T ss_dssp             EEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGGGGT
T ss_pred             eeccCCCCHHHHHHhcCCCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC------cccCcchhcC
Confidence            34567788888 6666789999999999999987665    99999999999999999988642      2222223345


Q ss_pred             CCEEE--eeccccCCc-cchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          83 PDIVI--LGKALSGGL-YPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        83 ~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      .|+++  .+|.++|.- .=.|.++++++.+.+.+  ..........+|..+..++..++.+.-  ..++..+++..+.+.
T Consensus       200 aDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~l--Rm~~~~~nA~~lA~~  277 (397)
T d1y4ia1         200 ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGI--RMERHCENALKIARF  277 (397)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHH--HHHHHHHHHHHHHHH
Confidence            68777  669988421 23566778877665432  111111123456655555555554432  346667788888888


Q ss_pred             HHhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCcee----------ccC------
Q psy6548         158 LRSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT----------KPI------  205 (242)
Q Consensus       158 l~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~------  205 (242)
                      | +..+.       +...         ...+.|.++.|.+......+..|.+.|.--++.+          .|.      
T Consensus       278 L-~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~  356 (397)
T d1y4ia1         278 L-EGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSP  356 (397)
T ss_dssp             H-HTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSS
T ss_pred             H-HhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCcccccccc
Confidence            8 65542       1111         1122467888887764233455655553111111          111      


Q ss_pred             -----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 -----------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 -----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                 .++.+|+++    ..|+.+.+++.|++++++
T Consensus       357 ~~~e~r~~~Gi~~~liRlsv----GlEd~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         357 VAPEERLKAGITDGLIRLSV----GLEDPEDIINDLEHAIRK  394 (397)
T ss_dssp             SCHHHHHHTTCCTTEEEEEC----CSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCcCEEEEEe----ccCCHHHHHHHHHHHHHH
Confidence                       357899994    345667777777777664

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.33  E-value=1.6e-11  Score=103.60  Aligned_cols=213  Identities=15%  Similarity=0.075  Sum_probs=124.1

Q ss_pred             CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccC---cccc---c----ccCCCCCCEE
Q psy6548          19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTG---KLLA---I----HYEDVRPDIV   86 (242)
Q Consensus        19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g---~~~~---~----~~~~~~~~~~   86 (242)
                      .+.+++++++..+|++|+.+++.+.++++.++|++||+.++.|+++..  .+..+   ..+.   .    ....-..|++
T Consensus       172 ~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~  251 (456)
T d1c7ga_         172 AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGC  251 (456)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEE
T ss_pred             CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccE
Confidence            357889999999999998999999999999999999999999999841  00000   0000   0    0000124677


Q ss_pred             Eee--ccccCCccchheeEeC-hhhhhccCCC----CCCCCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548          87 ILG--KALSGGLYPISAVLAD-DEVMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        87 ~~s--K~~~~g~~~~g~~~~~-~~~~~~l~~~----~~~~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l  158 (242)
                      ++|  |.++++  ..|+++.+ +.+++.++..    ....+.++ +...+.++...+......++.++..++.+++.+.|
T Consensus       252 s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L  329 (456)
T d1c7ga_         252 TMSGKKDCLVN--IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKL  329 (456)
T ss_dssp             EEETTTTTCCS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccc--ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            654  777744  13555554 5565555421    01112222 22222222222333333445566677778999999


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEec-------CCchhHHHHHHHH-HHCCceeccC-----------------CCCEEEEe
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLD-------KSILEVYDVCIKM-KDAGLVTKPI-----------------SNNIIRLS  213 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lR~~  213 (242)
                       ++.+....  .+..++.+.++..       ........+...+ .+.||-..+.                 ....+|++
T Consensus       330 -~~~g~~vv--~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLa  406 (456)
T d1c7ga_         330 -REAGVPIV--EPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLT  406 (456)
T ss_dssp             -HHTTCCBC--SSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEE
T ss_pred             -HhccCCcc--cCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEe
Confidence             66553222  1333444444321       1112344444444 4667765321                 23469998


Q ss_pred             cc-CcCCHHHHHHHHHHHHHHHHH
Q psy6548         214 PA-LNITEQELREGLDIIINTINT  236 (242)
Q Consensus       214 ~~-~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ++ ...|+++||.+++.|+++.++
T Consensus       407 ip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         407 IPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             cCcccCCHHHHHHHHHHHHHHHhh
Confidence            65 445999999999999988764

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.2e-12  Score=105.80  Aligned_cols=217  Identities=16%  Similarity=0.122  Sum_probs=133.4

Q ss_pred             cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548           5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP   83 (242)
Q Consensus         5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~   83 (242)
                      ..++..|.+. +....+++++|++|.+-|++-.++.    +++++++|+++|+++|+|.+...      +..++-.....
T Consensus       118 ~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~at------P~~~~Pl~~Ga  187 (384)
T d1cs1a_         118 LFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLS------PALQNPLALGA  187 (384)
T ss_dssp             EEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGGGGTC
T ss_pred             ccccCCCHHHHHhhccccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccC------cccccccccCC
Confidence            4456677777 6666789999999999999987665    99999999999999999998741      12222233456


Q ss_pred             CEEE--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548          84 DIVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        84 ~~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~  159 (242)
                      |+++  .+|.++|.- .=.|.++++ +.+.+.+...........+|..+......++.+.-  ..++..+++..+.+.| 
T Consensus       188 DiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~l--Rm~~~~~nA~~lA~~L-  264 (384)
T d1cs1a_         188 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIVKYL-  264 (384)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHH-
T ss_pred             CEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhHH--HHHHHHHHHHHHHHhc-
Confidence            8877  669998420 224556664 45544443211111123456555444444443322  3466677888888888 


Q ss_pred             hhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------c---------
Q psy6548         160 SRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------P---------  204 (242)
Q Consensus       160 ~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~---------  204 (242)
                      +..+.       +...         ...+.|.++.+.+......+..|.+.|.--.+.++          |         
T Consensus       265 ~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~  344 (384)
T d1cs1a_         265 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMA  344 (384)
T ss_dssp             TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSC
T ss_pred             ccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceeccccccccccCC
Confidence            65543       1111         12234778888887653344556655531111111          1         


Q ss_pred             --------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         205 --------ISNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       205 --------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                              ..++.+|++    ...|+.+.+++.|+++++...
T Consensus       345 ~e~r~~~Gi~~~lvRlS----vGlEd~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         345 PEARAAAGISETLLRIS----TGIEDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             HHHHHHHTCCTTEEEEE----CCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCcCeEEEE----eccCCHHHHHHHHHHHHHHhc
Confidence                    035789999    445677888888888887653

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.24  E-value=7.7e-10  Score=93.46  Aligned_cols=211  Identities=11%  Similarity=0.016  Sum_probs=129.0

Q ss_pred             CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCcc
Q psy6548          21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLY   97 (242)
Q Consensus        21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~   97 (242)
                      .+.+|+..-....+|.+=|    +++|+++|++||+++.+|.+|.|+............++ ..|.++  ..|+++.+ +
T Consensus       235 ~p~~VvataGtt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P-~  309 (476)
T d1js3a_         235 IPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-F  309 (476)
T ss_dssp             EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-S
T ss_pred             CcEEEeecCCCccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC-C
Confidence            3555666666777786666    99999999999999999999977532221111111233 357777  45999977 7


Q ss_pred             chheeEeChh-hh-hccCCC-------CC---------CCCCC-CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH
Q psy6548          98 PISAVLADDE-VM-GTLVPG-------TH---------GSTYG-GNPLACKLAMTALDVILEE---NMIENAYKMGEIFR  155 (242)
Q Consensus        98 ~~g~~~~~~~-~~-~~l~~~-------~~---------~~~~~-~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~  155 (242)
                      .+|.++..+. .. ..+...       ..         ..+.. +-.......+.+++.+-.+   ++.++..++++++.
T Consensus       310 ~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~  389 (476)
T d1js3a_         310 DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFE  389 (476)
T ss_dssp             SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence            8888877642 22 111110       00         01111 1112222345566655443   45566667888888


Q ss_pred             HHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCc-eeccC---CCCEEEEecc-CcCCHHHHHHHHHHH
Q psy6548         156 SELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL-VTKPI---SNNIIRLSPA-LNITEQELREGLDII  230 (242)
Q Consensus       156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~~~~~---~~~~lR~~~~-~~~t~e~i~~~~~~l  230 (242)
                      +.| ++.+. +....+....++.|.+.......+++.++|.+.|. ++++.   +...+|+++. ...++++++.+++.|
T Consensus       390 ~~l-~~~~~-fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i  467 (476)
T d1js3a_         390 AFV-LQDPR-FEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI  467 (476)
T ss_dssp             HHH-HHCTT-EEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHH-hcCCC-eEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            888 55543 11112233456777776542345678888888874 34432   5568999864 556889999999999


Q ss_pred             HHHHHHHh
Q psy6548         231 INTINTMA  238 (242)
Q Consensus       231 ~~~l~~~~  238 (242)
                      ++..+++.
T Consensus       468 ~~~a~~ll  475 (476)
T d1js3a_         468 RGLAAELL  475 (476)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988864

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=1.8e-09  Score=89.67  Aligned_cols=216  Identities=14%  Similarity=0.097  Sum_probs=131.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR   82 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~   82 (242)
                      ++.+|.++... ..-.+++++++++..++.. | ...   .++++.+++++.|.++++|--...++-.-.+   ..  +.
T Consensus       178 vv~v~~~~~~~~~~~~~~~~Aavmi~~Pnt~-G-~~e---d~~~i~~~~h~~G~l~~~~ad~~al~~l~~P---g~--~G  247 (437)
T d1wyua1         178 LLTLPLEGGRTPLPEVGEEVGAVVVQNPNFL-G-ALE---DLGPFAEAAHGAGALFVAVADPLSLGVLKPP---GA--YG  247 (437)
T ss_dssp             EEEECCBTTBCCCCCCCTTEEEEEEESSCTT-S-BCC---CHHHHHHHHHHTTCEEEEECCTTGGGTBCCH---HH--HT
T ss_pred             EEeeecccccchhhhhccceeEEEEcccccc-c-ccc---chHHHHHHhhhccceEEeeechhhhhccccc---cc--cc
Confidence            45666665554 3334679999999888554 5 333   2899999999999988877433222111111   11  24


Q ss_pred             CCEEEe-ecccc-----CCccchheeEeChhhhhccCCCCCC----------------------------CCCC-CCHHH
Q psy6548          83 PDIVIL-GKALS-----GGLYPISAVLADDEVMGTLVPGTHG----------------------------STYG-GNPLA  127 (242)
Q Consensus        83 ~~~~~~-sK~~~-----~g~~~~g~~~~~~~~~~~l~~~~~~----------------------------~~~~-~~~~~  127 (242)
                      .|+++. +|.|+     || -..|++.+++++...+.....+                            ++.. .+.+.
T Consensus       248 aDi~~g~~q~fg~p~g~GG-P~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~  326 (437)
T d1wyua1         248 ADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLT  326 (437)
T ss_dssp             CSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHH
T ss_pred             cceEeeccceeccccCCCc-CccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHH
Confidence            588774 36555     44 4578888888887666532111                            1112 22332


Q ss_pred             HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec-
Q psy6548         128 CKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-  203 (242)
Q Consensus       128 ~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-  203 (242)
                      +..+..-+..+-.+   ++.++...+++++++.| .+++.....  ....++--|.+..+ .++.++.++|.++|+... 
T Consensus       327 a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L-~~~~g~~~~--~~~~~f~ef~v~~~-~~~~~i~k~L~d~G~~~~~  402 (437)
T d1wyua1         327 ALMGAMYLAALGPEGLREVALKSVEMAHKLHALL-LEVPGVRPF--TPKPFFNEFALALP-KDPEAVRRALAERGFHGAT  402 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSTTCEEC--SCSSBCSEEEEECS-SCHHHHHHHHHHTTCCCCE
T ss_pred             HHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHh-hhcCCeecc--CCCCeeeEEEEECC-CCHHHHHHHHHhCCCCCCc
Confidence            22222233333333   34566777889999999 665421111  11112222333222 358899999999999742 


Q ss_pred             ----cCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         204 ----PISNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       204 ----~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                          ....+.+.++++-..|+++||++++.|++++
T Consensus       403 ~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         403 PVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             ECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence                2356889999999999999999999998864

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.22  E-value=1.6e-10  Score=92.93  Aligned_cols=216  Identities=14%  Similarity=0.091  Sum_probs=132.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHH-HhhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC-SQYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~-~~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +-.++.+|++. +...+++++.|++|.+.|++-.++.    ++++++++ +++|+++|+|.+...      +..++-...
T Consensus        65 ~~~~d~~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at------p~~~~pl~~  134 (331)
T d1pffa_          65 VDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS------PILTNPLDL  134 (331)
T ss_dssp             EEEECTTSTTHHHHTCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH------HHHCCGGGG
T ss_pred             EEEecccchhhHhhhcccccceeeeeccccccccccc----chhhhhhhhcccCceEEeeccccc------ccccccccc
Confidence            34466778888 7777889999999999999886665    77788875 678999999988742      122222334


Q ss_pred             CCCEEE--eeccccC-CccchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSG-GLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|+++  .+|.++| +=.-.|.++.+++......  ..........+|..+......++.+..  ..++..+++..+.+
T Consensus       135 GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA~~lA~  212 (331)
T d1pffa_         135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQKVAE  212 (331)
T ss_dssp             TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            568887  6699984 2133566777765544432  111111123456655555555555433  35667778888888


Q ss_pred             HHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHH--HCCceec--------c------
Q psy6548         157 ELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMK--DAGLVTK--------P------  204 (242)
Q Consensus       157 ~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~~--------~------  204 (242)
                      .| +..+..       ...         ...+.|.++.+.+... ..+..|.+.|.  ..+.-..        |      
T Consensus       213 ~L-~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~-~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~  290 (331)
T d1pffa_         213 FL-HEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGL-EKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHA  290 (331)
T ss_dssp             HH-HHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH-HHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTST
T ss_pred             hh-hhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccH-HHHHHHHHhCCcceecccCCCCceeEeCccccccc
Confidence            88 655531       111         1123477888888754 55666666653  1121111        0      


Q ss_pred             -----------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 -----------ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 -----------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                 ..++.+|+++.    .|+.+.+++.|+++++.+
T Consensus       291 ~~~~e~~~~~Gi~~~liRlsvG----lE~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         291 GVPKEEREAAGLTDNLIRLSVG----CENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             TSCHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHhcCCCcCeEEEEee----eCCHHHHHHHHHHHHHHh
Confidence                       03578999944    456677777777777653

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.2e-10  Score=95.16  Aligned_cols=213  Identities=16%  Similarity=0.150  Sum_probs=137.4

Q ss_pred             Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548          11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI   87 (242)
Q Consensus        11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~   87 (242)
                      |.+.  +.++..++++|++-.  +...-..+    +++++++|++.|+++++|.+| +|+...|.. . .-++ ..|+++
T Consensus       153 Dyd~l~~~a~~~kPklIi~G~--S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~~-~-sP~~-~aDvvt  223 (416)
T d1dfoa_         153 DYADLEKQAKEHKPKMIIGGF--SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGVY-P-NPVP-HAHVVT  223 (416)
T ss_dssp             CHHHHHHHHHHHCCSEEEEEC--SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS-C-CCTT-TSSEEE
T ss_pred             cHHHHHHHHHHhccceEEecc--cccccccC----HHHHHHHHHhcCceEEcchhhhhcceecccc-C-Cccc-ccceee
Confidence            4444  455567788887764  33332333    999999999999999999999 676433321 1 1112 248887


Q ss_pred             e--eccccCCccchheeEeC---hhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHHHHh---ccHHHHHHHHHHHHHHHH
Q psy6548          88 L--GKALSGGLYPISAVLAD---DEVMGTLVPGTHGSTYGGNPLACKLAMT-ALDVILE---ENMIENAYKMGEIFRSEL  158 (242)
Q Consensus        88 ~--sK~~~~g~~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~~~~---~~~~~~~~~~~~~l~~~l  158 (242)
                      .  .|+|.|+  |.|.++.+   +++.+.+......+..+++-....++.+ +++...+   .++.+++.++++.|.+.|
T Consensus       224 ~tThKtlrGP--rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L  301 (416)
T d1dfoa_         224 TTTHKTLAGP--RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVF  301 (416)
T ss_dssp             EESSSTTCCC--SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhcccCC--CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4  4999974  67878775   4666655543333333333232323322 3443322   357788889999999999


Q ss_pred             HhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC------CCCEEEEecc----CcCCHHHHH
Q psy6548         159 RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPA----LNITEQELR  224 (242)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~lR~~~~----~~~t~e~i~  224 (242)
                       .+.+-.+.... ...+++++++...+.+..+..+.|.+.||.+.    |.      .++.||+..+    ..+.++|++
T Consensus       302 -~~~G~~iv~gg-TdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~  379 (416)
T d1dfoa_         302 -LERGYKVVSGG-TDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAK  379 (416)
T ss_dssp             -HHTTCEEGGGS-CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHH
T ss_pred             -HhCCcccccCC-CCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHH
Confidence             66663332211 23467888886653466788888888899984    22      3568999743    467889999


Q ss_pred             HHHHHHHHHHHH
Q psy6548         225 EGLDIIINTINT  236 (242)
Q Consensus       225 ~~~~~l~~~l~~  236 (242)
                      ++.+.|.++++.
T Consensus       380 ~iA~~I~~~l~~  391 (416)
T d1dfoa_         380 ELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999888865

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.21  E-value=1.7e-10  Score=94.77  Aligned_cols=218  Identities=14%  Similarity=0.099  Sum_probs=131.6

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHH-hhCCEEEEeccccccCccCcccccccCCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QYNVLFIADEVQTGLGRTGKLLAIHYEDV   81 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~-~~~~~li~De~~~~~~~~g~~~~~~~~~~   81 (242)
                      +..++.+|++. +...++++++|++|.+-|++..++.    ++++.+.++ ++|+++|+|.+.+.      +..++-+..
T Consensus       126 ~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~at------P~~~~Pl~~  195 (394)
T d1e5ea_         126 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCS------PMITNPVDF  195 (394)
T ss_dssp             EEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTC------TTTCCGGGG
T ss_pred             eeccCCCCHHHHHHhhcccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccC------cccCCchhc
Confidence            45677788888 7777889999999999999986665    887777665 57899999988742      122222344


Q ss_pred             CCCEEE--eeccccCCc-cchheeEeChhhhhccCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          82 RPDIVI--LGKALSGGL-YPISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        82 ~~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      ..|+++  .+|.++|.. .-.|.++++++.+...+.  .........+|..+......++.+.  -..++..+++..+.+
T Consensus       196 GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~--lRm~r~~~nA~~lA~  273 (394)
T d1e5ea_         196 GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRMKAESENAMKVAE  273 (394)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH--HHHHHHHHHHHHHHH
Confidence            568887  669998421 335567777776654321  1111111345555544444444332  245667788888889


Q ss_pred             HHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHH--HCCcee--------ccC-----
Q psy6548         157 ELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMK--DAGLVT--------KPI-----  205 (242)
Q Consensus       157 ~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~--------~~~-----  205 (242)
                      .| +..+..       ...         ...+.|.++.|.+......+..|.+.|.  ..+.-+        .|.     
T Consensus       274 ~L-~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~  352 (394)
T d1e5ea_         274 YL-KSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHA  352 (394)
T ss_dssp             HH-HTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTT
T ss_pred             HH-hhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECccccccc
Confidence            99 655431       111         1113366777777664223444555442  111111        110     


Q ss_pred             ------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548         206 ------------SNNIIRLSPALNITEQELREGLDIIINTINTMA  238 (242)
Q Consensus       206 ------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~  238 (242)
                                  .++.||+++    ..|+.+.+++.|+++++++.
T Consensus       353 ~~~~~~r~~~Gi~~~liRlSV----GlEd~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         353 VVPKEEREAAGITDGMIRLSV----GIEDADELIADFKQGLDALL  393 (394)
T ss_dssp             TSCHHHHHHTTCCTTEEEEEC----CSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHhcCCCcCEEEEEe----ccCCHHHHHHHHHHHHHHhh
Confidence                        246899993    34677778888888887764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.21  E-value=1e-10  Score=95.18  Aligned_cols=209  Identities=15%  Similarity=0.123  Sum_probs=139.2

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEEee--cc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVILG--KA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~s--K~   91 (242)
                      +.++..++++|++-....+   ...+   +++++++|++.|++++.|-+| +|+...|. +.-+ ++ ..|+++.+  |+
T Consensus       157 ~~a~~~kPklIi~G~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~~P-~~-~aDvvt~tThKt  227 (405)
T d1kl1a_         157 EKARLHRPKLIVAAASAYP---RIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HPNP-VP-YAHFVTTTTHKT  227 (405)
T ss_dssp             HHHHHHCCSEEEECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCS-TT-TCSEEEEESSST
T ss_pred             HHHHhhCcceEEecccccc---cccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cCCh-hh-hhhheecccccc
Confidence            4455677888887664322   2222   999999999999999999999 67633332 1111 12 35888855  99


Q ss_pred             ccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHH-HHh--ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548          92 LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT-ALDV-ILE--ENMIENAYKMGEIFRSELRSRLSPDIV  167 (242)
Q Consensus        92 ~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~-~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~  167 (242)
                      |.|+  |.|.++.+++..+.+....+.+..+++-....++.+ ++.. +..  +++.+++.++++.|.+.| .+.+-.+.
T Consensus       228 lrGP--rgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L-~~~G~~vv  304 (405)
T d1kl1a_         228 LRGP--RGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL-QNEGFTLV  304 (405)
T ss_dssp             TCCC--SCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH-HHTTCEEG
T ss_pred             ccCC--CCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hcCCceee
Confidence            9985  788888998888777654333333333333333332 3333 322  457788889999999999 66663332


Q ss_pred             CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC------CCCEEEEecc----CcCCHHHHHHHHHHHHHH
Q psy6548         168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI------SNNIIRLSPA----LNITEQELREGLDIIINT  233 (242)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------~~~~lR~~~~----~~~t~e~i~~~~~~l~~~  233 (242)
                      +.. ...+++++++...+.+..+..+.|.+.||.+.    |.      .++.||+..+    ....++|+.++.+.|.++
T Consensus       305 ~gg-Td~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~  383 (405)
T d1kl1a_         305 SGG-TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV  383 (405)
T ss_dssp             GGS-CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cCC-CccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHH
Confidence            221 23568888886654566777777888899886    22      2468999743    467889999999999988


Q ss_pred             HHH
Q psy6548         234 INT  236 (242)
Q Consensus       234 l~~  236 (242)
                      ++.
T Consensus       384 l~~  386 (405)
T d1kl1a_         384 LKN  386 (405)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            854

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.8e-10  Score=94.54  Aligned_cols=216  Identities=13%  Similarity=0.031  Sum_probs=129.3

Q ss_pred             ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCC
Q psy6548           4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYED   80 (242)
Q Consensus         4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~   80 (242)
                      +..++.+|+++ +...++++++|++|.+.|++..++.    +++++++|+++  |+++++|.+...      +..++-..
T Consensus       125 ~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~at------P~~~~Pl~  194 (391)
T d1cl1a_         125 TSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAA------GVLFKALD  194 (391)
T ss_dssp             EEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTT------TTSSCGGG
T ss_pred             cccccCccccccccccccccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccc------hhhhcccc
Confidence            34566677887 7777789999999999999987665    89999999775  999999998742      12222233


Q ss_pred             CCCCEEE--eeccccCCc-cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548          81 VRPDIVI--LGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE  157 (242)
Q Consensus        81 ~~~~~~~--~sK~~~~g~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~  157 (242)
                      ...|+++  .+|.++|.- .-.|.++.+++..+.+...........+|..+......++.+.  -..++..+++..+.+.
T Consensus       195 ~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~--lR~~~~~~nA~~vA~~  272 (391)
T d1cl1a_         195 FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEW  272 (391)
T ss_dssp             GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH
T ss_pred             cccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH--HHHHHHHHHHHHHHHH
Confidence            4568777  669998420 2255566776666555432111112334554444333344332  2356677788888888


Q ss_pred             HHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHH---HHHHHHH--HCCceec--------c----
Q psy6548         158 LRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVY---DVCIKMK--DAGLVTK--------P----  204 (242)
Q Consensus       158 l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~---~~~~~l~--~~gi~~~--------~----  204 (242)
                      | +..+..       ...         ...+.+.++.|.+... .+.+   .|.+.|.  ..+.-+.        |    
T Consensus       273 L-~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~-~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~  350 (391)
T d1cl1a_         273 L-AEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK-LNNEELANYLDNFSLFSMAYSWGGYESLILANQPEH  350 (391)
T ss_dssp             H-HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-CCHHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHH
T ss_pred             H-HhcccccccccccccchhhHHHHhhccCCCCcceeeeecCC-CCHHHHHHHHHcCCcceEeeCCCCCccceeCCcccc
Confidence            8 655431       110         1123345666777654 2333   3444332  2222221        0    


Q ss_pred             -----------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548         205 -----------ISNNIIRLSPALNITEQELREGLDIIINTINTM  237 (242)
Q Consensus       205 -----------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~  237 (242)
                                 ..++.||++    ...|+++.+++.|+++++++
T Consensus       351 ~~~~~~~~~~gi~~~liRlS----VGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         351 IAAIRPQGEIDFSGTLIRLH----IGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHTSTTCCCCCCSCEEEEE----CCSSCHHHHHHHHHHHHHHT
T ss_pred             cccCCchHhcCCCcCEEEEE----eccCCHHHHHHHHHHHHHhh
Confidence                       034679999    34467788888888888764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.19  E-value=6.1e-11  Score=96.85  Aligned_cols=193  Identities=9%  Similarity=-0.021  Sum_probs=107.6

Q ss_pred             cCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhc
Q psy6548          32 GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT  111 (242)
Q Consensus        32 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~  111 (242)
                      +.+|...+    ++++.++|++||+++++|.+++ ++  +.+...+.  .+.++.+.+|.++.+ -.++++...+.+.+.
T Consensus       147 ~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g--~~~id~~~--~di~~~s~~k~~~~~-~~~~~~~~~~~~~~~  216 (361)
T d2c0ra1         147 LTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-IL--SRPFDLNQ--FGLVYAGAQKNLGPS-GVTVVIVREDLVAES  216 (361)
T ss_dssp             EESEETTT----TEECSSCCCCTTSCEEEECTTT-TT--SSCCCGGG--CSEEEEETTTTTCCS-SCEEEEEEGGGSSSC
T ss_pred             Eeccccee----cceEEEeeccCCceEEEEeecc-cc--cccccccc--ceeEEEecccccccc-cCcEEEEEhHHhhhC
Confidence            34555555    4566789999999999999996 22  22333333  345666677888832 123334344433332


Q ss_pred             cCCCC-----------CCCCCCCCHHHHHHHHHHHHHHHh-c---cHHHHHHHHHHHHHHHHHhhcCC-C-CCCeEee-e
Q psy6548         112 LVPGT-----------HGSTYGGNPLACKLAMTALDVILE-E---NMIENAYKMGEIFRSELRSRLSP-D-IVPVVRG-K  173 (242)
Q Consensus       112 l~~~~-----------~~~~~~~~~~~~~~a~a~l~~~~~-~---~~~~~~~~~~~~l~~~l~~~l~~-~-~~~~~~~-~  173 (242)
                      -....           .......++........+...... .   ....+.++.+..+.... ..... . ....... +
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~rS  295 (361)
T d2c0ra1         217 PKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAI-DQSGGFYRGCVDVDSRS  295 (361)
T ss_dssp             CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HTSTTSSEESSCGGGBC
T ss_pred             ccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhh-hhcccccccCCChhhcc
Confidence            22110           111112233322222222222222 1   23344444444444444 32221 1 1111111 2


Q ss_pred             ceeEEEEecCCchhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                      ...+.+.+++. .+.+++.+.|.++||.+..+.+  +.+|++...+++.||++++++.|++..++
T Consensus       296 ~~~~~~~~~~~-~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         296 DMNITFRLASE-ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             SSEEEEECSCH-HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCc-ccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            24466667665 6788999999999999987622  34999988888999999999999876553

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=5.2e-10  Score=90.68  Aligned_cols=208  Identities=11%  Similarity=-0.092  Sum_probs=118.4

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccC
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG   94 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~   94 (242)
                      ......++.++++...++.+|...+.++      ..++.+++++++|.+.+ ++  +  ..++.++.+.++.+.+|.+++
T Consensus       132 ~~~~~~~~~~v~v~~~~~~t~~~~~~~~------i~~~~~~~~v~vDa~~~-~~--~--~~vd~~~~dv~~~ss~k~~~~  200 (360)
T d1bjna_         132 MREWQLSDNAAYMHYCPNETIDGIAIDE------TPDFGADVVVAADFSST-IL--S--RPIDVSRYGVIYAGAQKNIGP  200 (360)
T ss_dssp             GGGCCCCSSCSCEEECSEETTTTEECCC------CCCCCTTCCEEEECTTT-TT--S--SCCCGGGCSEEEEETTTTTSS
T ss_pred             hhhhccCCceeEEEecccccccCccccc------eecccccceeeeeeecc-cc--c--eeeeeccceeEEEEccccccc
Confidence            3334555566566666677776666432      24577899999998775 22  1  122333444455557799985


Q ss_pred             CccchheeEeChhhhhccCCCC-----------CCCCCCCCHHHHHHHHHH-HHHHHh---ccHHHHHHHHHHHHHHHHH
Q psy6548          95 GLYPISAVLADDEVMGTLVPGT-----------HGSTYGGNPLACKLAMTA-LDVILE---ENMIENAYKMGEIFRSELR  159 (242)
Q Consensus        95 g~~~~g~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~a~a~-l~~~~~---~~~~~~~~~~~~~l~~~l~  159 (242)
                      + .+.+.++.++...+......           ........+.....+... +.....   +...++.++........+ 
T Consensus       201 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  278 (360)
T d1bjna_         201 A-GLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVI-  278 (360)
T ss_dssp             T-TCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             C-CCceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-
Confidence            5 45666666655443333211           011112233333232222 222222   123344444444444444 


Q ss_pred             hhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         160 SRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       160 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ......  ...........+.|.+++. .+.+++.+.|.++||.+..+.+  +.+|++...++|+|||+++++.|++..+
T Consensus       279 ~~~~~~~~~~~~~~rs~~v~~f~~~~~-~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~  357 (360)
T d1bjna_         279 DNSDFYRNDVAKRNRSRMNVPFQLADS-ALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER  357 (360)
T ss_dssp             HHCSSEECCBCGGGBCSSEEEEEESSG-GGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             hccccccccCCcccccceEEEEEcCCc-ccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            443321  1111112234566788765 6888999999999999977632  3499998888999999999999988654


Q ss_pred             H
Q psy6548         236 T  236 (242)
Q Consensus       236 ~  236 (242)
                      +
T Consensus       358 ~  358 (360)
T d1bjna_         358 R  358 (360)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.09  E-value=3.3e-10  Score=92.14  Aligned_cols=191  Identities=10%  Similarity=-0.026  Sum_probs=107.2

Q ss_pred             CCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhcc
Q psy6548          33 EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL  112 (242)
Q Consensus        33 ~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l  112 (242)
                      .+|...+    ++++.++|++||+++|+|.+++ +  .+....++.+  ..|+.+++|.++++ -+.|+++.++...+..
T Consensus       148 ~tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~--g~~~id~~~~--~vd~~~~~~~k~~~-~~~~~~~~~~~~~~~~  217 (360)
T d1w23a_         148 TSNNTIY----GTQYQNFPEINHAPLIADMSSD-I--LSRPLKVNQF--GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKV  217 (360)
T ss_dssp             ESEETTT----TEECSSCCCCCSSCEEEECTTT-T--TSSCCCGGGC--SEEEEETTTTTSCT-TCEEEEEEHHHHCSCC
T ss_pred             cCCcccc----ceeeeeccccceeeEEeecccc-c--cccccccccc--cceEEeeccccccC-CcceeeEechhhhccc
Confidence            3455555    6678899999999999999996 3  2223333444  45778888777633 3345555554443333


Q ss_pred             CCCC-----------CCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhcCCC--CCCeEeee-c
Q psy6548         113 VPGT-----------HGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSPD--IVPVVRGK-G  174 (242)
Q Consensus       113 ~~~~-----------~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~-~  174 (242)
                      ....           .............+....+.....    .....+.+.......... ......  ........ .
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~rS~  296 (360)
T d1w23a_         218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI-DESNGFYVGHAEKGSRSL  296 (360)
T ss_dssp             TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HTTTTSSEESSCGGGBCS
T ss_pred             ccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhcccccccCCChhhcce
Confidence            3210           111112222222222222222222    122333333333333333 222211  11111112 2


Q ss_pred             eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                      ..+.|.+++. .+.+++.+.|.++||.+..+.  -+.+|++...++|.|+++++++.+++..+
T Consensus       297 ~vvsf~i~~~-~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         297 MNVTFNLRNE-ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             SEEEEECSSH-HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCC-ccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence            3567777765 678899999999999987652  23599997667799999999999987665

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.08  E-value=2.4e-09  Score=88.11  Aligned_cols=210  Identities=15%  Similarity=0.124  Sum_probs=127.0

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL-   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~-   88 (242)
                      |++. +...++++++|++.+.++...       .++++.++|++|++++|.|.+|+ +|..-.+   ...|-..|+.++ 
T Consensus       111 d~~~~~~~i~~~tk~i~~~~~~g~~~-------d~~~i~~~~~~~~i~lieD~a~a-~ga~~~g---~~~g~~g~~~~~S  179 (384)
T d1b9ha_         111 DPEAVAAAVTPRTKVIMPVHMAGLMA-------DMDALAKISADTGVPLLQDAAHA-HGARWQG---KRVGELDSIATFS  179 (384)
T ss_dssp             CHHHHHHHCCTTEEEECCBCGGGCCC-------CHHHHHHHHHHHTCCBCEECTTC-TTCEETT---EEGGGSSSCEEEE
T ss_pred             chhhhccccccccccccccccccccc-------ccccchhhhhhhhhhhhhhhcee-cccccCC---EecCcccccceec
Confidence            3444 555688999998877766432       28899999999999999999996 2221111   111223455553 


Q ss_pred             ---eccccCCccchheeEe-ChhhhhccCCC-----------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548          89 ---GKALSGGLYPISAVLA-DDEVMGTLVPG-----------------THGSTYGGNPLACKLAMTALDVILEENMIENA  147 (242)
Q Consensus        89 ---sK~~~~g~~~~g~~~~-~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~  147 (242)
                         +|.+++| - .|.++. ++++.+.++..                 ..++.+..+.+.++.++..|+.+  ++..+..
T Consensus       180 f~~~K~i~~g-~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R  255 (384)
T d1b9ha_         180 FQNGKLMTAG-E-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVR  255 (384)
T ss_dssp             CCTTSSSCSS-S-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHH
T ss_pred             cccccccccc-c-cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhc--ccchhhh
Confidence               3888855 2 455554 45555544211                 12344555666665555555433  4456777


Q ss_pred             HHHHHHHHHHHHhhcCCC----CCCeEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC----------------
Q psy6548         148 YKMGEIFRSELRSRLSPD----IVPVVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI----------------  205 (242)
Q Consensus       148 ~~~~~~l~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~----------------  205 (242)
                      +++.+++.+.| +.+...    ...... ....+..+.++... ...+++.+.|.++||-+++.                
T Consensus       256 ~~~~~~y~~~L-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~  334 (384)
T d1b9ha_         256 DERWTLLSRLL-GAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAP  334 (384)
T ss_dssp             HHHHHHHHHHH-HTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCC
T ss_pred             hhhhhhhhhhh-hcccccccccccccccccccccccceecccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCC
Confidence            78888888888 665421    111111 12233344444321 34567999999999987421                


Q ss_pred             -----------------CCCEEEEeccCcCC-HHHHHHHHHHHHHHHHH
Q psy6548         206 -----------------SNNIIRLSPALNIT-EQELREGLDIIINTINT  236 (242)
Q Consensus       206 -----------------~~~~lR~~~~~~~t-~e~i~~~~~~l~~~l~~  236 (242)
                                       ....+.+=.+...| ++|+++.++.|++++++
T Consensus       335 ~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         335 DESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             SSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                             01346665566666 67999999999988764

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.07  E-value=8.7e-09  Score=84.22  Aligned_cols=206  Identities=13%  Similarity=0.147  Sum_probs=126.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee----c
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG----K   90 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s----K   90 (242)
                      +...+.++.+|++.+.++.   ...    ++++.++|+++|+++|.|.+|+ +|..   ..-...|-..++.++|    |
T Consensus       114 ~~~~~~~t~avi~vh~~G~---~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga~---~~~~~~G~~g~~~~~Sf~~~K  182 (371)
T d2fnua1         114 EKLINERTKAIVSVDYAGK---SVE----VESVQKLCKKHSLSFLSDSSHA-LGSE---YQNKKVGGFALASVFSFHAIK  182 (371)
T ss_dssp             GGGCCTTEEEEEEECGGGC---CCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTS
T ss_pred             hhhccchhhcccccccccc---ccc----cccccccccccchhhccchhhc-cCce---eccccCCcccccccccccccc
Confidence            5556789999988776553   232    8899999999999999999996 3211   1112224455666655    8


Q ss_pred             cccCCccchheeEeC-hhhhhccCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548          91 ALSGGLYPISAVLAD-DEVMGTLVPG----------------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI  153 (242)
Q Consensus        91 ~~~~g~~~~g~~~~~-~~~~~~l~~~----------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~  153 (242)
                      .+++| - .|.++.+ +++.+.++..                ..+..+..+.+.++.++..++.+  +++.++.+++...
T Consensus       183 ~l~~g-~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~  258 (371)
T d2fnua1         183 PITTA-E-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALT  258 (371)
T ss_dssp             SSCCS-S-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHH
T ss_pred             ccccc-c-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhh
Confidence            88854 2 4555554 5666555421                12344555666666555555433  3456666777777


Q ss_pred             HHHHHHhhcCCCCCC----eEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC----------------C------
Q psy6548         154 FRSELRSRLSPDIVP----VVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI----------------S------  206 (242)
Q Consensus       154 l~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~----------------~------  206 (242)
                      +.+.| +..+.....    ........+.+.+.... ...+++.+.|.++||-+++.                +      
T Consensus       259 y~~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae  337 (371)
T d2fnua1         259 YDRIF-KDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAE  337 (371)
T ss_dssp             HHHHH-TTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHH
T ss_pred             hcccc-cccccccccccccccccccccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHH
Confidence            77778 554321110    11112222333343321 34578999999999987632                0      


Q ss_pred             ---CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         207 ---NNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       207 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                         ...+.+=.+...|++|+++.++.|.+.+++
T Consensus       338 ~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         338 DFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence               135666445667999999999999988875

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=4.4e-10  Score=92.25  Aligned_cols=207  Identities=12%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHH----hhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548          12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS----QYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV   86 (242)
Q Consensus        12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~----~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~   86 (242)
                      .++ +.+.++++++|++|.+-|++..++.    +++++++|+    ++|+++|+|.+...      +..++-.....|++
T Consensus       128 ~~~~~~~i~~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiV  197 (393)
T d1n8pa_         128 LNDLPQLIKENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIV  197 (393)
T ss_dssp             HHHHHHHSCSSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEE
T ss_pred             hHHHHHHhhhhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccC------cccCCchhhCCCEE
Confidence            445 6667889999999999999986665    899999998    78899999998742      12222233456888


Q ss_pred             E--eeccccC--CccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548          87 I--LGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR  161 (242)
Q Consensus        87 ~--~sK~~~~--g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~  161 (242)
                      +  .+|.++|  . .-.|.++. ++++.+.++..........+|..+...+..++.+.  -..++..+++..+.+.| +.
T Consensus       198 vhS~TKyi~GhsD-v~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~L-~~  273 (393)
T d1n8pa_         198 VHSATKYINGHSD-VVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFL-AA  273 (393)
T ss_dssp             EEETTTTTTCSSC-CCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH-TS
T ss_pred             EEccccccCCCCc-cccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchh--hHHHHHHHHHHHHHHHH-Hh
Confidence            7  6699984  3 23455554 45566666432111122345655544444444332  23466667777788888 43


Q ss_pred             c-CC-------CCCCe-----------EeeeceeEEEEecCCchhHHHHHHHHH--HCCcee--------ccC-------
Q psy6548         162 L-SP-------DIVPV-----------VRGKGLLNAIVLDKSILEVYDVCIKMK--DAGLVT--------KPI-------  205 (242)
Q Consensus       162 l-~~-------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~--------~~~-------  205 (242)
                      - +.       .....           ..+.|.++.|++......+..|.+.|.  ..+.-+        .|.       
T Consensus       274 ~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~  353 (393)
T d1n8pa_         274 DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGI  353 (393)
T ss_dssp             CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSS
T ss_pred             ccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCceEeCchhhccccC
Confidence            2 21       11110           112367899998765233556666663  211111        110       


Q ss_pred             ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548         206 ----------SNNIIRLSPALNITEQELREGLDIIINTINT  236 (242)
Q Consensus       206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~  236 (242)
                                .++.||+++.    .|+.+.+++.|++++++
T Consensus       354 ~~~~r~~~gi~~~liRlSvG----lE~~~DLi~Dl~~AL~~  390 (393)
T d1n8pa_         354 PKEAREASGVFDDLVRISVG----IEDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             CTTTTTTTSCCTTEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCcCEEEEEec----cCCHHHHHHHHHHHHHH
Confidence                      2468999943    45677777777777765

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=3.4e-09  Score=86.65  Aligned_cols=207  Identities=16%  Similarity=0.157  Sum_probs=121.8

Q ss_pred             Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548          11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL-   88 (242)
Q Consensus        11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~-   88 (242)
                      |++. +...+++|++|++.+++   |...+    +++|.++|++||+++|.|.+|+ +|..-....   .|. .+..++ 
T Consensus       108 d~~~l~~~i~~~tkaIi~~h~~---G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~~---~g~-~g~~~~S  175 (376)
T d1mdoa_         108 TPEHIEAAITPQTKAIIPVHYA---GAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGRH---IGA-RGTAIFS  175 (376)
T ss_dssp             CHHHHHHHCCTTEEEECCBCGG---GCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTEE---TTS-SSEEEEE
T ss_pred             CHHHHHHhcCCCCeEEEEeCCC---CCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCee---ccc-ccCcccc
Confidence            5555 55566789999987654   43343    8999999999999999999996 322111111   121 123333 


Q ss_pred             ---eccccCCccchheeEeC-hhhhhccCCC------------------------CCCCCCCCCHHHHHHHHHHHHHHHh
Q psy6548          89 ---GKALSGGLYPISAVLAD-DEVMGTLVPG------------------------THGSTYGGNPLACKLAMTALDVILE  140 (242)
Q Consensus        89 ---sK~~~~g~~~~g~~~~~-~~~~~~l~~~------------------------~~~~~~~~~~~~~~~a~a~l~~~~~  140 (242)
                         +|.+++| - .|.++.+ +++.+.++..                        ..+.++..+.+.++.+...++.+  
T Consensus       176 f~~~K~l~~g-~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--  251 (376)
T d1mdoa_         176 FHAIKNITCA-E-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--  251 (376)
T ss_dssp             CCTTSSSCSS-S-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--
T ss_pred             CCCcCCCCCC-C-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--
Confidence               3888854 2 3555554 5555544321                        01233344455555444444422  


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCC-C--CCeEeeeceeE-EEEecCC--chhHHHHHHHHHHCCceeccC---------
Q psy6548         141 ENMIENAYKMGEIFRSELRSRLSPD-I--VPVVRGKGLLN-AIVLDKS--ILEVYDVCIKMKDAGLVTKPI---------  205 (242)
Q Consensus       141 ~~~~~~~~~~~~~l~~~l~~~l~~~-~--~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~~gi~~~~~---------  205 (242)
                      +++.++.+++.+++.+.| +.+... .  ........... .+.+...  ..+.+++.+.|.++||-+++.         
T Consensus       252 ~~~~~~r~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~  330 (376)
T d1mdoa_         252 DALNARRAAIAAQYHQAM-ADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKY  330 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHH
T ss_pred             hHHHHHHhhhhhhhhhhc-ccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHH
Confidence            456778888889999999 666531 1  11111111222 2222211  023468999999999987521         


Q ss_pred             ----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         206 ----------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       206 ----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                                      ....+.+=.+...|++|+++.++.|++++
T Consensus       331 ~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         331 YRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                            12457775667779999999999998864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=8.2e-10  Score=91.22  Aligned_cols=212  Identities=14%  Similarity=0.074  Sum_probs=121.8

Q ss_pred             cCCCChh-h-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548           7 VKSKQVP-A-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD   84 (242)
Q Consensus         7 ~~~~d~~-~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~   84 (242)
                      ++-+|.+ . +...+++|++|++|.+-|++..++.    +++|+++|+++|+++|+|.+...   +  +..++-.....|
T Consensus       128 ~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~---t--P~~~~Pl~~GaD  198 (421)
T d2ctza1         128 TSREERPEEFLALTDEKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM---G--GYLLRPLAWGAA  198 (421)
T ss_dssp             CCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG---G--GTSCCGGGGTCS
T ss_pred             cccccCcchhccccCCCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc---c--ceeccccccCCc
Confidence            4434443 3 6667889999999999999987665    99999999999999999998641   1  122222334568


Q ss_pred             EEE--eeccccCCc-cchheeEeChhhh-hccCC--------CCCC-----------------------CCCCCCHHHHH
Q psy6548          85 IVI--LGKALSGGL-YPISAVLADDEVM-GTLVP--------GTHG-----------------------STYGGNPLACK  129 (242)
Q Consensus        85 ~~~--~sK~~~~g~-~~~g~~~~~~~~~-~~l~~--------~~~~-----------------------~~~~~~~~~~~  129 (242)
                      +++  .+|.++|.- .-.|.++.+++.. +..+.        ..++                       .....+|..+.
T Consensus       199 iVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~  278 (421)
T d2ctza1         199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW  278 (421)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred             EEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHH
Confidence            887  669998420 2244555443211 11000        0000                       01123455544


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCC---------eE-eeeceeEEEEecCCchhHHHHH
Q psy6548         130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVP---------VV-RGKGLLNAIVLDKSILEVYDVC  192 (242)
Q Consensus       130 ~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~  192 (242)
                      ..+..++.+.  -..++..+++..+.+.| +..+.       +...         .. .+.|.++.|.+......+..|.
T Consensus       279 l~~rgl~TL~--lRm~~~~~nA~~vA~~L-~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~  355 (421)
T d2ctza1         279 VVLLGMETLS--LRAERHVENTLHLAHWL-LEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFI  355 (421)
T ss_dssp             HHHHHHTTHH--HHHHHHHHHHHHHHHHH-HTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHH
T ss_pred             HHhcCCcchh--hHHHHHHHHHHHHHhhh-ccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHH
Confidence            4444444332  23566777888888888 55542       1111         00 1247788888865423355566


Q ss_pred             HHHHH--CCcee--------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548         193 IKMKD--AGLVT--------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTI  234 (242)
Q Consensus       193 ~~l~~--~gi~~--------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l  234 (242)
                      +.|.-  .+.-.        .|.                 .++.||+++    ..|+.+.+++.|++++
T Consensus       356 ~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSv----GlEd~eDLi~DL~qAL  420 (421)
T d2ctza1         356 SRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSV----GLEHVEDLKAELKEAL  420 (421)
T ss_dssp             HTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEEC----CSSCHHHHHHHHHHHT
T ss_pred             HcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEe----ccCCHHHHHHHHHHhc
Confidence            66541  11111        111                 357899993    3456667777776654

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.01  E-value=4.2e-09  Score=87.04  Aligned_cols=208  Identities=16%  Similarity=0.130  Sum_probs=131.8

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEEee--cc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVILG--KA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~s--K~   91 (242)
                      +.+...++++|++-....+   ...+   +++++++|++.|++|++|-+| +|+...|.. ..+ ++ ..|+++.+  |+
T Consensus       170 ~~a~~~kPklIi~G~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~-~sP-~~-~aDvvt~tTHKT  240 (463)
T d2a7va1         170 LTARLFRPRLIIAGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVI-PSP-FK-HADIVTTTTHKT  240 (463)
T ss_dssp             HHHHHHCCSEEEECCSSCC---SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSS-CCG-GG-TCSEEEEESSGG
T ss_pred             HHHhhcCCceEEecccccc---cccC---HHHHHHHhhcccceEEechhhhhHHhhhhhh-cCh-hh-hhhhhhchhhhh
Confidence            4455677888887663222   2222   999999999999999999999 676444321 111 12 24888855  99


Q ss_pred             ccCCccchheeEeChh---------------hhhccCCCCCCCCCCCCHHHHHHHHH-HHHHHHh---ccHHHHHHHHHH
Q psy6548          92 LSGGLYPISAVLADDE---------------VMGTLVPGTHGSTYGGNPLACKLAMT-ALDVILE---ENMIENAYKMGE  152 (242)
Q Consensus        92 ~~~g~~~~g~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~~~~---~~~~~~~~~~~~  152 (242)
                      |.|+  |.|.++.+++               +.+.+....+.+..+++-....++++ ++....+   +++.+++.++.+
T Consensus       241 lrGP--rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk  318 (463)
T d2a7va1         241 LRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNAR  318 (463)
T ss_dssp             GCSC--SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             hcCC--CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9974  6777777652               23333221122222223232223332 3333322   357788888999


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc---------CCCCEEEEecc----CcCC
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP---------ISNNIIRLSPA----LNIT  219 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---------~~~~~lR~~~~----~~~t  219 (242)
                      .|.+.| .+.+-.+... ....+++++++...+.+..+..+.|.+.||.+..         ..++.||+..+    ....
T Consensus       319 ~La~~L-~~~G~~vv~g-gTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~  396 (463)
T d2a7va1         319 AMADAL-LERGYSLVSG-GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR  396 (463)
T ss_dssp             HHHHHH-HHTTCEEGGG-SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred             HHHHHH-HhCCCeeecC-CCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCC
Confidence            999999 6655333322 1234678888866435678888889999999952         24567999643    4678


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTIN  235 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~  235 (242)
                      ++|+.++.+.|.++++
T Consensus       397 e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         397 EDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999988775

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.95  E-value=7.9e-09  Score=85.59  Aligned_cols=208  Identities=13%  Similarity=0.113  Sum_probs=131.9

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEEee--cc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVILG--KA   91 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~s--K~   91 (242)
                      +.++..++++|++-....+   ...+   +++++++|++.|++|++|-+| +|+...|.. .-+. + ..|+++.+  |+
T Consensus       174 ~~a~~~kPklIi~G~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~-~sPl-~-~aDvvt~tTHKt  244 (470)
T d1rv3a_         174 ENARLFHPKLIIAGTSCYS---RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVV-PSPF-E-HCHVVTTTTHKT  244 (470)
T ss_dssp             HHHHHHCCSEEEECCSSCC---SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS-CCGG-G-TCSEEEEESSGG
T ss_pred             HHHHhhCcceEeechhhcc---ccCC---HHHHHHHHhccCCeEEecchhhhhhcccccc-CChh-h-eeeeeeeehhhh
Confidence            4445667788877664322   2232   999999999999999999999 676444321 1111 2 24888855  99


Q ss_pred             ccCCccchheeEeChh---------------hhhccCCCCCCCCCCCCHHHHHHHHH-HHHHHHh---ccHHHHHHHHHH
Q psy6548          92 LSGGLYPISAVLADDE---------------VMGTLVPGTHGSTYGGNPLACKLAMT-ALDVILE---ENMIENAYKMGE  152 (242)
Q Consensus        92 ~~~g~~~~g~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~~~~---~~~~~~~~~~~~  152 (242)
                      |.|+  |.|.++.+++               +.+.+....+.+..+++-....++.+ +++...+   .++.+++.++.+
T Consensus       245 lrGP--rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk  322 (470)
T d1rv3a_         245 LRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCR  322 (470)
T ss_dssp             GCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             ccCC--cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            9874  6777776543               33334332222222333233333332 3443333   356777888999


Q ss_pred             HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC-----CCCEEEEec----cCcCC
Q psy6548         153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI-----SNNIIRLSP----ALNIT  219 (242)
Q Consensus       153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lR~~~----~~~~t  219 (242)
                      .+.+.| .+.+-.+.... ...+++++++...+.+..++.+.|.+.||.+.    |.     .++.||+.-    +..+.
T Consensus       323 ~La~~L-~~~G~~v~~gg-TdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~  400 (470)
T d1rv3a_         323 ALSAAL-VELGYKIVTGG-SDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL  400 (470)
T ss_dssp             HHHHHH-HHTTCEEGGGS-CSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred             HHHHHH-HhCCceeccCC-CCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCC
Confidence            999999 66553232221 23577888886543567788888889999985    22     356899964    35778


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6548         220 EQELREGLDIIINTIN  235 (242)
Q Consensus       220 ~e~i~~~~~~l~~~l~  235 (242)
                      ++|+.++.+.|.++++
T Consensus       401 e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         401 EKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999988875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=7.7e-08  Score=80.54  Aligned_cols=211  Identities=15%  Similarity=0.093  Sum_probs=128.7

Q ss_pred             hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548          15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL   92 (242)
Q Consensus        15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~   92 (242)
                      ....+++++++++..+++.+....    ..+++.+++++++..+++|-+.... -.+. ....  +...|+++  .++.|
T Consensus       196 ~~~~~~~~a~v~v~~p~~~g~~e~----~~~~~~~~~h~~g~~~~~~~~~~~~-~~~l-~~p~--~~g~div~vg~~q~~  267 (471)
T d1wyub1         196 KRELGPHVAALMLTNPNTLGLFER----RILEISRLCKEAGVQLYYDGANLNA-IMGW-ARPG--DMGFDVVHLNLHKTF  267 (471)
T ss_dssp             HHHCSTTEEEEEECSSCTTSCCCT----THHHHHHHHHHHTCEEEEEGGGGGG-TTTT-CCHH--HHTCSEEECCTTTTT
T ss_pred             hhhhhccccceeeccCCCcccccc----hhhhhHHHHHhccccccccccchhh-hhhc-cccC--ccccccccccccccc
Confidence            444567899999998887765322    3788999999999988887654211 0110 0001  11235554  34555


Q ss_pred             c-----CCccchheeEeChhhhhccCCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHhc---cHHH
Q psy6548          93 S-----GGLYPISAVLADDEVMGTLVPGTH-------------------GSTYGGNPLACKLAMTALDVILEE---NMIE  145 (242)
Q Consensus        93 ~-----~g~~~~g~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~~~~a~a~l~~~~~~---~~~~  145 (242)
                      |     || ..+|++..++++..++.....                   ....+.+.+...++...+.++-.+   ++.+
T Consensus       268 G~P~~~GG-P~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~  346 (471)
T d1wyub1         268 TVPHGGGG-PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAA  346 (471)
T ss_dssp             CCCCTTSC-CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-ccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHH
Confidence            4     45 568899899888766642200                   011122333332333233444333   4567


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----c-CCCCEEEEeccCcCCH
Q psy6548         146 NAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----P-ISNNIIRLSPALNITE  220 (242)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~-~~~~~lR~~~~~~~t~  220 (242)
                      ...++..+++++| +..+-..... ...-.-+.+..+.. .+..++.++|.+.|++-.    | .+++.+-++++-.+|+
T Consensus       347 ~~~~~A~Yla~~L-~~~G~~~~~~-~~ff~EFvv~~~~~-~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tk  423 (471)
T d1wyub1         347 LAVLNARYLKELL-KEKGYRVPYD-GPSMHEFVAQPPEG-FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK  423 (471)
T ss_dssp             HHHHHHHHHHHHH-HHTTCBCSSC-SSCCSCEEEBCSTT-CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCH
T ss_pred             HHHHHHHHHHHHH-hhcCceeccC-cceeeEEeecCCCC-CCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCH
Confidence            7788999999999 6544222111 11112223344433 467889999999998653    1 1467899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6548         221 QELREGLDIIINTINTM  237 (242)
Q Consensus       221 e~i~~~~~~l~~~l~~~  237 (242)
                      +|||++++.|++++++.
T Consensus       424 edID~lv~aL~~i~~e~  440 (471)
T d1wyub1         424 ETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             HHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998854

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.87  E-value=1.1e-07  Score=77.61  Aligned_cols=204  Identities=13%  Similarity=0.207  Sum_probs=122.3

Q ss_pred             cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee----cc
Q psy6548          16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG----KA   91 (242)
Q Consensus        16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s----K~   91 (242)
                      ...+.++.++++...++..    .   .++++.++|+++|++||.|.+|+ +|..-.+   ...|-..|+.++|    |.
T Consensus       106 ~~~~~~~~aii~~~~~G~~----~---d~~~i~~~~~~~~i~vIED~a~a-~g~~~~~---~~~G~~gd~~~fSf~~~K~  174 (374)
T d1o69a_         106 KECEKKPKALILTHLYGNA----A---KMDEIVEICKENDIVLIEDAAEA-LGSFYKN---KALGTFGEFGVYSYNGNKI  174 (374)
T ss_dssp             HHCSSCCCEEEEECGGGCC----C---CHHHHHHHHHHTTCEEEEECTTC-TTCEETT---EETTSSSSEEEEECCTTSS
T ss_pred             hhcccccccccccccccch----h---hhHHHHHHhhccCcchhhhhhhh-hcceECC---eecCCCCceEEEeccCccc
Confidence            3456778888887776543    2   29999999999999999999996 3221111   1224455777765    88


Q ss_pred             ccCCccchheeEe-ChhhhhccCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548          92 LSGGLYPISAVLA-DDEVMGTLVPG--------------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS  156 (242)
Q Consensus        92 ~~~g~~~~g~~~~-~~~~~~~l~~~--------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~  156 (242)
                      +++| - .|.++. +++++++++..              ..+..+..+.+.++.+...++.+  +.+.++.+++.+.+.+
T Consensus       175 l~tg-e-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~  250 (374)
T d1o69a_         175 ITTS-G-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKE  250 (374)
T ss_dssp             SCCS-S-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred             cccc-c-ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHh
Confidence            8844 2 345554 46666555311              12344556667666666555433  3456667777788888


Q ss_pred             HHHhhcCCC--CCCeEeeeceeEEEEecCC--------------------chhHHHHHHHHHHCCceeccCC--------
Q psy6548         157 ELRSRLSPD--IVPVVRGKGLLNAIVLDKS--------------------ILEVYDVCIKMKDAGLVTKPIS--------  206 (242)
Q Consensus       157 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~gi~~~~~~--------  206 (242)
                      .| +.....  ..........+..+.+..+                    ......+.+.|.++||-+++..        
T Consensus       251 ~L-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~  329 (374)
T d1o69a_         251 FL-GEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEV  329 (374)
T ss_dssp             HH-TTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGG
T ss_pred             hc-cccccccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChh
Confidence            88 543211  1111111111111111111                    0356789999999999876421        


Q ss_pred             ----------------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548         207 ----------------NNIIRLSPALNITEQELREGLDIIINTIN  235 (242)
Q Consensus       207 ----------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~  235 (242)
                                      ...+.+=.+...|++|+++.++.|.+.++
T Consensus       330 ~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         330 FKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             GTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence                            12344434566799999999999988763