Psyllid ID: psy6565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTEDRGHC
cEEEEccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccEEcccEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
mvmigedtllrfsgvplgeacTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISneatrtpgkEAVAMEAFARSLAMLpttiadnagydSAQLVSELRAAHasgkstagldmdqgkvgdmsqlgitESYVVKRQVLTSASEAAEMILRVDNIIkaaprkrtedrghc
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGkstagldmdqgkVGDMSQLGITESYVVKRQVLTSASEAAEMILRVdniikaaprkrtedrghc
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTEDRGHC
****GEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEA*******AVAMEAFARSLAMLPTTIADNAGYD*********************************LGITESYVVKRQVLTSASEAAEMILRVDNII**************
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDN****************
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRA*********GLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP**********
MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTEDRGHC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q3ZBH0535 T-complex protein 1 subun yes N/A 0.994 0.343 0.755 3e-78
Q5XIM9535 T-complex protein 1 subun yes N/A 0.994 0.343 0.75 6e-77
Q4R6F8535 T-complex protein 1 subun N/A N/A 0.994 0.343 0.744 6e-77
P78371535 T-complex protein 1 subun yes N/A 0.994 0.343 0.744 6e-77
P80314535 T-complex protein 1 subun yes N/A 0.994 0.343 0.75 7e-77
Q54ES9532 T-complex protein 1 subun yes N/A 0.962 0.334 0.617 5e-62
P47207529 T-complex protein 1 subun yes N/A 0.994 0.347 0.608 2e-61
P39076527 T-complex protein 1 subun yes N/A 0.978 0.343 0.595 2e-59
Q10147527 Probable T-complex protei yes N/A 0.956 0.335 0.576 4e-58
Q8SQP2508 T-complex protein 1 subun yes N/A 0.967 0.352 0.438 6e-41
>sp|Q3ZBH0|TCPB_BOVIN T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=1 SV=3 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/184 (75%), Positives = 162/184 (88%)

Query: 2   VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
           VMIGED L+ FSGV LGEACTIV+RGATQQI+DEA+RSLHDALCVLA TV+++R VYGGG
Sbjct: 352 VMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 411

Query: 62  CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
           CSEMLMA A++  A+RTPGKEAVAME++A++L MLPT IADNAGYDSA LV++LRAAH+ 
Sbjct: 412 CSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE 471

Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
           GK+TAGLDM +G +GDMS LGITES+ VKRQVL SA+EAAE+ILRVDNIIKAAPRKR  D
Sbjct: 472 GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVPD 531

Query: 182 RGHC 185
              C
Sbjct: 532 HHPC 535
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Bos taurus (taxid: 9913)
>sp|Q5XIM9|TCPB_RAT T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3 Back     alignment and function description
>sp|Q4R6F8|TCPB_MACFA T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3 Back     alignment and function description
>sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4 Back     alignment and function description
>sp|P80314|TCPB_MOUSE T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4 Back     alignment and function description
>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1 Back     alignment and function description
>sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=1 SV=2 Back     alignment and function description
>sp|P39076|TCPB_YEAST T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT2 PE=1 SV=1 Back     alignment and function description
>sp|Q10147|TCPB_SCHPO Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct2 PE=3 SV=1 Back     alignment and function description
>sp|Q8SQP2|TCPB_ENCCU T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
340714893 534 PREDICTED: t-complex protein 1 subunit b 0.994 0.344 0.798 3e-83
350398805 534 PREDICTED: T-complex protein 1 subunit b 0.994 0.344 0.782 7e-82
157116575 489 chaperonin [Aedes aegypti] gi|108876406| 0.994 0.376 0.804 1e-81
289740483 535 chaperonin complex component TcP-1 beta 0.994 0.343 0.788 1e-81
91078026 534 PREDICTED: similar to AGAP009694-PA [Tri 0.994 0.344 0.826 2e-81
194769326 533 GF19192 [Drosophila ananassae] gi|190618 0.994 0.345 0.788 3e-81
170046898 300 thermosome subunit alpha [Culex quinquef 0.994 0.613 0.809 4e-81
66533395 534 PREDICTED: t-complex protein 1 subunit b 0.994 0.344 0.777 8e-81
332022680 537 T-complex protein 1 subunit beta [Acromy 0.994 0.342 0.809 1e-80
195438954 533 GK16400 [Drosophila willistoni] gi|19416 0.994 0.345 0.777 5e-80
>gi|340714893|ref|XP_003395957.1| PREDICTED: t-complex protein 1 subunit beta-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 168/184 (91%)

Query: 2   VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
           +M+GEDTLLRFSGVPLGEACT++IRGATQQI+DEA+RSLHDALCVL+ATVRE+R+VYGGG
Sbjct: 351 IMLGEDTLLRFSGVPLGEACTVIIRGATQQILDEAERSLHDALCVLSATVRESRIVYGGG 410

Query: 62  CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
           CSEM+MA A+ N AT TPGKEAVAME+FAR+L  LPT IADNAGYDSAQLVSELRAAH S
Sbjct: 411 CSEMIMACAVMNAATSTPGKEAVAMESFARALQQLPTVIADNAGYDSAQLVSELRAAHNS 470

Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
           G +T GLDM+QGKVG M QLGITES+ VKRQVL SA+EAAEMILRVD+I++AAPRKR +D
Sbjct: 471 GANTMGLDMEQGKVGCMKQLGITESWAVKRQVLVSAAEAAEMILRVDDILRAAPRKRVKD 530

Query: 182 RGHC 185
           RG C
Sbjct: 531 RGRC 534

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350398805|ref|XP_003485309.1| PREDICTED: T-complex protein 1 subunit beta-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|157116575|ref|XP_001658558.1| chaperonin [Aedes aegypti] gi|108876406|gb|EAT40631.1| AAEL007650-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|289740483|gb|ADD18989.1| chaperonin complex component TcP-1 beta subunit CCT2 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|91078026|ref|XP_970646.1| PREDICTED: similar to AGAP009694-PA [Tribolium castaneum] gi|270001410|gb|EEZ97857.1| hypothetical protein TcasGA2_TC000229 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|194769326|ref|XP_001966756.1| GF19192 [Drosophila ananassae] gi|190618277|gb|EDV33801.1| GF19192 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|170046898|ref|XP_001850982.1| thermosome subunit alpha [Culex quinquefasciatus] gi|167869490|gb|EDS32873.1| thermosome subunit alpha [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|66533395|ref|XP_393300.2| PREDICTED: t-complex protein 1 subunit beta-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|332022680|gb|EGI62961.1| T-complex protein 1 subunit beta [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195438954|ref|XP_002067397.1| GK16400 [Drosophila willistoni] gi|194163482|gb|EDW78383.1| GK16400 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
FB|FBgn0030086535 CG7033 [Drosophila melanogaste 0.994 0.343 0.782 3.6e-73
ZFIN|ZDB-GENE-020419-6535 cct2 "chaperonin containing TC 0.994 0.343 0.777 6.1e-71
UNIPROTKB|Q3ZBH0535 CCT2 "T-complex protein 1 subu 0.994 0.343 0.755 7e-70
UNIPROTKB|E2QSH7535 CCT2 "Uncharacterized protein" 0.994 0.343 0.744 4.9e-69
UNIPROTKB|F6V0D8535 CCT2 "Uncharacterized protein" 0.994 0.343 0.744 4.9e-69
UNIPROTKB|D0G0C8535 CCT2 "Chaperonin containing TC 0.994 0.343 0.744 6.3e-69
RGD|1359143535 Cct2 "chaperonin containing TC 0.994 0.343 0.75 6.3e-69
UNIPROTKB|P78371535 CCT2 "T-complex protein 1 subu 0.994 0.343 0.744 1e-68
UNIPROTKB|Q5F424535 CCT2 "Uncharacterized protein" 0.994 0.343 0.733 1.3e-68
UNIPROTKB|B6V9S9535 CCT2 "Uncharacterized protein" 0.994 0.343 0.744 1.3e-68
FB|FBgn0030086 CG7033 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 144/184 (78%), Positives = 162/184 (88%)

Query:     2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
             VMIGEDTLLRFSGV LGEACTIVIRGATQQI+DEADRSLHDALCVLAATV+E+R+++GGG
Sbjct:   352 VMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHDALCVLAATVKESRIIFGGG 411

Query:    62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
             CSE LMA A+  +A  TPGKEA+A+EAFAR+L  LPT IADNAGYDSAQLVSELRA HA 
Sbjct:   412 CSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAIADNAGYDSAQLVSELRAGHAQ 471

Query:   122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
             GK T GLDM+ GKV D+ +LGITES+ VKRQVL SASEAAEMILRVDNII+ APR+R  D
Sbjct:   472 GKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMILRVDNIIRCAPRRRVPD 531

Query:   182 RGHC 185
             RG+C
Sbjct:   532 RGYC 535
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0006457 "protein folding" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0031122 "cytoplasmic microtubule organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
GO:0072686 "mitotic spindle" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
ZFIN|ZDB-GENE-020419-6 cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBH0 CCT2 "T-complex protein 1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH7 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V0D8 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D0G0C8 CCT2 "Chaperonin containing TCP1, subunit 2 (Beta)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1359143 Cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P78371 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F424 CCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S9 CCT2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10147TCPB_SCHPONo assigned EC number0.57620.95670.3358yesN/A
P47207TCPB_CAEELNo assigned EC number0.60860.99450.3478yesN/A
Q54ES9TCPB_DICDINo assigned EC number0.61790.96210.3345yesN/A
Q3ZBH0TCPB_BOVINNo assigned EC number0.75540.99450.3439yesN/A
P78371TCPB_HUMANNo assigned EC number0.74450.99450.3439yesN/A
P80314TCPB_MOUSENo assigned EC number0.750.99450.3439yesN/A
Q5XIM9TCPB_RATNo assigned EC number0.750.99450.3439yesN/A
P39076TCPB_YEASTNo assigned EC number0.59560.97830.3434yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-109
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-103
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-94
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 2e-69
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 2e-56
cd03343517 cd03343, cpn60, cpn60 chaperonin family 7e-52
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 8e-51
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 8e-47
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 9e-44
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 8e-42
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 8e-41
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 8e-41
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 4e-40
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 6e-40
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 6e-40
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 8e-38
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-37
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 4e-37
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-36
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 3e-34
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 1e-24
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-24
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-15
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-08
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 8e-07
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 4e-06
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 9e-06
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 2e-05
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 2e-04
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 4e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.002
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.004
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
 Score =  322 bits (827), Expect = e-109
 Identities = 130/176 (73%), Positives = 155/176 (88%)

Query: 2   VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
           +MIGED L+RFSGV  GEACTIV+RGA+QQI+DEA+RSLHDALCVLA TV++TRVV GGG
Sbjct: 342 IMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGG 401

Query: 62  CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
           CSEMLMA A+   A +TPGK+++A+EAFA++L  LPT IADNAGYDSA+LV++LRAAH +
Sbjct: 402 CSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN 461

Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
           G +TAGLDM +G VGDM +LGITES+ VKRQVL SASEAAEMILRVD+IIK APRK
Sbjct: 462 GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
KOG0361|consensus543 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0363|consensus527 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
KOG0357|consensus400 100.0
KOG0364|consensus527 100.0
KOG0358|consensus534 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359|consensus520 100.0
KOG0360|consensus545 100.0
KOG0362|consensus537 100.0
KOG0356|consensus550 99.92
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 98.95
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information 
Probab=100.00  E-value=2.9e-46  Score=334.69  Aligned_cols=175  Identities=71%  Similarity=1.092  Sum_probs=169.3

Q ss_pred             EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565           2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK   81 (185)
Q Consensus         2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~   81 (185)
                      +.||+++|++|++|++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus       343 ~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~  422 (519)
T TIGR02341       343 IMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGK  422 (519)
T ss_pred             EEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCCh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565          82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA  161 (185)
Q Consensus        82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a  161 (185)
                      +++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|+.+|++.||++.|||||+.+|+++|+.|+++|
T Consensus       423 ~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a  502 (519)
T TIGR02341       423 EALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAA  502 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887778999999999999999999999999999999999999


Q ss_pred             HHHHcHHHHHhcCCC
Q psy6565         162 EMILRVDNIIKAAPR  176 (185)
Q Consensus       162 ~~iL~iD~iI~~~~~  176 (185)
                      ++||+||++|..+|+
T Consensus       503 ~~iL~id~ii~~~~~  517 (519)
T TIGR02341       503 EVILRVDNIIKAAPR  517 (519)
T ss_pred             HHHHhHHHHHhcCCC
Confidence            999999999999873

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-77
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-60
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-29
1a6d_A545 Thermosome From T. Acidophilum Length = 545 2e-29
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-29
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-29
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-29
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-29
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 7e-29
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 7e-29
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 7e-29
3izh_A513 Mm-Cpn D386a With Atp Length = 513 7e-29
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 8e-29
3izi_A513 Mm-Cpn Rls With Atp Length = 513 8e-29
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 8e-29
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-28
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-28
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 8e-28
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-27
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-27
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 5e-27
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 6e-27
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-26
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-26
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-26
1a6d_B543 Thermosome From T. Acidophilum Length = 543 1e-24
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-23
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-22
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-16
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-14
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-08
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  282 bits (722), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 158/175 (90%)
Query: 2   VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
           VMIGED L+ FSGV LGEACTIV+RGATQQI+DEA+RSLHDALCVLA TV+++R VYGGG
Sbjct: 339 VMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 398
Query: 62  CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
           CSEMLMA A++  A+RTPGKEAVAME++A++L MLPT IADNAGYDSA LV++LRAAH+ 
Sbjct: 399 CSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE 458
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPR 176
           GK+TAGLDM +G +GDMS LGITES+ VKRQVL SA+EAAE+ILRVDNIIKAAPR
Sbjct: 459 GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 4e-88
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 2e-87
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 7e-85
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 7e-84
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 6e-83
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 9e-83
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 9e-83
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 2e-82
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 5e-82
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 9e-82
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 2e-81
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 9e-81
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 5e-80
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-79
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 2e-78
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-76
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 7e-69
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 4e-65
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 2e-64
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 9e-64
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 3e-59
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 2e-51
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-06
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 2e-05
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 2e-05
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-05
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
 Score =  266 bits (683), Expect = 4e-88
 Identities = 106/180 (58%), Positives = 141/180 (78%)

Query: 2   VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
           +M+GE   L+FSG   GEACTIV+RGAT Q +DEA+RSLHDAL VL+ T +ETR V GGG
Sbjct: 346 IMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGG 405

Query: 62  CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
           C+EM+M+ A+  EA    GK+++A+EAFAR+L  LPT +ADNAG+DS++LVS+LR++  +
Sbjct: 406 CAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYN 465

Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
           G ST+GLD++ G + DM QLGI ESY +KR V++SASEAAE++LRVDNII+A PR     
Sbjct: 466 GISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQ 525
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=1.9e-48  Score=348.27  Aligned_cols=174  Identities=40%  Similarity=0.587  Sum_probs=167.5

Q ss_pred             EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565           2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK   81 (185)
Q Consensus         2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~   81 (185)
                      ++||+++|++|+||+++++|||+|||+|+.+++|++|+++||++++|++++++++|||||++|++++.+|++++.+++++
T Consensus       348 ~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~  427 (529)
T 3iyg_A          348 ERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSR  427 (529)
T ss_pred             EEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCCh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC--------CceeEeCCCCcccccccCCccccHHHHHHH
Q psy6565          82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK--------STAGLDMDQGKVGDMSQLGITESYVVKRQV  153 (185)
Q Consensus        82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~--------~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~  153 (185)
                      +|+++++|++||+.||++|++|||+|+.+++.+|++.|..++        .++|+|+.+|++.||.+.|||||+.+|+++
T Consensus       428 eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~a  507 (529)
T 3iyg_A          428 EQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKS  507 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHH
Confidence            999999999999999999999999999999999999997654        579999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcHHHHHhcCC
Q psy6565         154 LTSASEAAEMILRVDNIIKAAP  175 (185)
Q Consensus       154 l~~a~~~a~~iL~iD~iI~~~~  175 (185)
                      |++|+|+|++|||||++|+..|
T Consensus       508 l~~A~e~a~~iL~iD~ii~~~~  529 (529)
T 3iyg_A          508 LKFATEAAITILRIDDLIKLHP  529 (529)
T ss_pred             HHHHHHHHHHHHhHHhhhcCCC
Confidence            9999999999999999998743
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 1e-31
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-30
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-21
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-14
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-06
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-06
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 0.003
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score =  112 bits (280), Expect = 1e-31
 Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 5   GEDTLLRFSGVPLGEACTIVIRGA-TQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
           G  T +  +G  L +A  ++ +      I +    +  +A  V+     +     GGG +
Sbjct: 75  GTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGAT 134

Query: 64  EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
              +A  + + A +  G++ +A+E FA ++  +P  +A+NAG D   ++ +LRA HA G 
Sbjct: 135 AAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGN 194

Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
            T G+++  G++ DM + G+ E   V +Q + SA+EAA MILR+D++I
Sbjct: 195 KTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.96
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.92
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.91
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.84
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.7
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.44
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 95.13
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 92.0
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=7.7e-33  Score=223.62  Aligned_cols=147  Identities=31%  Similarity=0.500  Sum_probs=136.7

Q ss_pred             cCCChh-hHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhc
Q psy6565          26 RGATQQ-IIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNA  104 (185)
Q Consensus        26 ~G~s~~-~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~Na  104 (185)
                      .|-+.. +.+-.+++++++++.++...++..++||||++|+.++..|.++++++++++|+++++|++||+.||++|++|+
T Consensus        96 ~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNa  175 (243)
T d1a6db1          96 QNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENA  175 (243)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccC
Confidence            344444 4555888888888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHh
Q psy6565         105 GYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIK  172 (185)
Q Consensus       105 G~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~  172 (185)
                      |+|+.+++.+|+..|.+++.++|+|..+|++.||.+.|||||+.+|+++|++|+|+|++|||||+||.
T Consensus       176 G~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         176 GLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             TCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             CCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998888999999999999999999999999999999999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure